1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ======================================================================-====*/
18 #ifndef clitkMotionMaskGenericFilter_h
19 #define clitkMotionMaskGenericFilter_h
21 /* =================================================
22 * @file clitkMotionMaskGenericFilter.h
28 ===================================================*/
33 #include "clitkCommon.h"
34 #include "clitkImageCommon.h"
35 #include "clitkMotionMask_ggo.h"
36 #include "clitkSetBackgroundImageFilter.h"
39 #include "itkLightObject.h"
40 #include "itkBinaryThresholdImageFilter.h"
41 #include "itkConnectedComponentImageFilter.h"
42 #include "itkRelabelComponentImageFilter.h"
43 #include "itkThresholdImageFilter.h"
44 #include "itkMirrorPadImageFilter.h"
45 #include "itkImageMomentsCalculator.h"
46 #include "itkResampleImageFilter.h"
47 #include "itkNearestNeighborInterpolateImageFunction.h"
48 #include "itkGeodesicActiveContourLevelSetImageFilter.h"
49 #include "itkSignedDanielssonDistanceMapImageFilter.h"
50 #include "itkLabelStatisticsImageFilter.h"
51 #include "itkCastImageFilter.h"
52 #include "itkCropImageFilter.h"
53 #include "itkBinaryMorphologicalClosingImageFilter.h"
54 #include "itkBinaryMorphologicalOpeningImageFilter.h"
55 #include "itkBinaryBallStructuringElement.h"
56 #include "itkImageRegionIteratorWithIndex.h"
57 #include "itkApproximateSignedDistanceMapImageFilter.h"
61 class ITK_EXPORT MotionMaskGenericFilter : public itk::LightObject
64 //----------------------------------------
66 //----------------------------------------
67 typedef MotionMaskGenericFilter Self;
68 typedef itk::LightObject Superclass;
69 typedef itk::SmartPointer<Self> Pointer;
70 typedef itk::SmartPointer<const Self> ConstPointer;
72 // Method for creation through the object factory
75 // Run-time type information (and related methods)
76 itkTypeMacro( MotionMaskGenericFilter, LightObject );
78 //----------------------------------------
80 //----------------------------------------
81 typedef int InternalPixelType;
84 //----------------------------------------
86 //----------------------------------------
87 void SetArgsInfo(const args_info_clitkMotionMask & a)
90 m_Verbose=m_ArgsInfo.verbose_flag;
91 m_InputFileName=m_ArgsInfo.input_arg;
95 //----------------------------------------
97 //----------------------------------------
102 //----------------------------------------
103 // Constructor & Destructor
104 //----------------------------------------
105 MotionMaskGenericFilter();
106 ~MotionMaskGenericFilter() {};
109 //----------------------------------------
111 //----------------------------------------
112 template <unsigned int Dimension, class PixelType>
113 typename itk::Image<InternalPixelType, Dimension>::Pointer GetAirImage(typename itk::Image<PixelType, Dimension>::Pointer input );
114 template <unsigned int Dimension, class PixelType>
115 typename itk::Image<InternalPixelType, Dimension>::Pointer GetBonesImage(typename itk::Image<PixelType, Dimension>::Pointer input );
116 template <unsigned int Dimension, class PixelType>
117 typename itk::Image<InternalPixelType, Dimension>::Pointer GetLungsImage(typename itk::Image<PixelType, Dimension>::Pointer input );
118 template <unsigned int Dimension, class PixelType>
119 typename itk::Image<InternalPixelType, Dimension>::Pointer Resample(typename itk::Image<InternalPixelType, Dimension>::Pointer input );
120 template <unsigned int Dimension, class PixelType>
121 typename itk::Image<InternalPixelType, Dimension>::Pointer InitializeEllips( typename itk::Vector<double,Dimension> center, typename itk::Image<InternalPixelType, Dimension>::Pointer bones_low);
124 template <unsigned int Dimension> void UpdateWithDim(std::string PixelType);
125 template <unsigned int Dimension, class PixelType> void UpdateWithDimAndPixelType();
128 //----------------------------------------
130 //----------------------------------------
131 args_info_clitkMotionMask m_ArgsInfo;
133 std::string m_InputFileName;
138 } // end namespace clitk
140 #ifndef ITK_MANUAL_INSTANTIATION
141 #include "clitkMotionMaskGenericFilter.txx"
144 #endif // #define clitkMotionMaskGenericFilter_h