segmentation/clitkRegionGrowing.ggo

   1 #File clitkRegionGrowing.ggo
   2 package "clitkRegionGrowing"
   3 version "1.0"
   4 purpose "Region growing from a seed point using various types of conditions to control the growing"
   5
   6 option "config"         -       "Config file"                     string        no
   7 option "verbose"        v       "Verbose"                         flag          off
   8
   9 section "I/O"
  10
  11 option "input"          i       "Input image filename"            string        yes
  12 option "output"         o       "Output image filename"           string        yes
  13
  14
  15 section "Parameters"
  16
  17 option "type"           t       "Region growing filter type: 0=threshold , 1=neighborhood-threshold , 2=confidence , 3= locally-adaptive-threshold, 4= explosion-controlled-threshold" int      no      default="0"
  18 option "lower"          l       "1,2,3,4: Lower threshold value"                  double        no      default="310"
  19 option "upper"          u       "1,2,3,4: Upper threshold value"                  double        no      default="4000"
  20 option "maxUpper"       -       "4: Maximum upper threshold value"                double        no      default="2000"
  21 option "minLower"       -       "4: Minimum lower threshold value"                double        no      default="-1000"
  22 option "step"           -       "4: Threshold step size"                          double        no      default="64.0"
  23 option "minStep"        -       "4: Minimum threshold step size"                  double        no      default="1"
  24 option "adaptLower"     -       "3,4: (locally) adapt lower thresholding"         flag          off
  25 option "adaptUpper"     -       "3,4: (locally) adapt upper thresholding"         flag          off
  26 option "multiplier"     m       "2-4: (2-3) accept if within mean+-mutiplier*SD, (4) explosion if size increases multiplier times"      double  no      default="2.0"
  27 option "seed"           s       "Seed index postion (in voxels)"                  int           multiple        no      default="0"
  28 option "seedRadius"     -       "Radius used for seed dilatation(in voxel)"       int           multiple        no      default="0"
  29 option "pad"            p       "The replace padding value"                       double        no              default="1.0"
  30 option "radius"         r       "1-3: The radius of the neighborhood"             int           no              multiple        default="1"
  31 option "maxSD"          -       "3: Limit to SD"                                  double        no
  32 option "full"           -       "4: use full connectivity (not implemented yet)"  flag          off
  33 option "iter"           -       "2: Iterations"                                   int           no      default="5"
  34