segmentation/clitkRelativePositionList.h

   1 /*=========================================================================
   2   Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
   3
   4   Authors belong to:
   5   - University of LYON              http://www.universite-lyon.fr/
   6   - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
   7   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
   8
   9   This software is distributed WITHOUT ANY WARRANTY; without even
  10   the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  11   PURPOSE.  See the copyright notices for more information.
  12
  13   It is distributed under dual licence
  14
  15   - BSD        See included LICENSE.txt file
  16   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  17   ======================================================================-====*/
  18
  19 #ifndef CLITKRELATIVEPOSITIONLIST_H
  20 #define CLITKRELATIVEPOSITIONLIST_H
  21
  22 // clitk
  23 #include "clitkSegmentationUtils.h"
  24 #include "clitkFilterWithAnatomicalFeatureDatabaseManagement.h"
  25 #include "clitkRelativePosition_ggo.h"
  26
  27 namespace clitk {
  28
  29   /*--------------------------------------------------------------------
  30     Manage a list of RelativePosition operations, to be performed on
  31     the same input image, with different objects and parameters.
  32     ------------------------------------------------------------------*/
  33
  34   template <class TImageType>
  35   class ITK_EXPORT RelativePositionList:
  36     public virtual clitk::FilterBase,
  37     public clitk::FilterWithAnatomicalFeatureDatabaseManagement,
  38     public itk::ImageToImageFilter<TImageType, TImageType>
  39   {
  40
  41   public:
  42     /** Standard class typedefs. */
  43     typedef itk::ImageToImageFilter<TImageType, TImageType> Superclass;
  44     typedef RelativePositionList           Self;
  45     typedef itk::SmartPointer<Self>        Pointer;
  46     typedef itk::SmartPointer<const Self>  ConstPointer;
  47
  48     /** Method for creation through the object factory. */
  49     itkNewMacro(Self);
  50
  51     /** Run-time type information (and related methods). */
  52     itkTypeMacro(RelativePositionList, ImageToImageFilter);
  53
  54       /** Some convenient typedefs. */
  55     typedef TImageType                       ImageType;
  56     typedef typename ImageType::ConstPointer ImageConstPointer;
  57     typedef typename ImageType::Pointer      ImagePointer;
  58     typedef typename ImageType::RegionType   ImageRegionType;
  59     typedef typename ImageType::PixelType    ImagePixelType;
  60     typedef typename ImageType::SizeType     ImageSizeType;
  61     typedef typename ImageType::IndexType    ImageIndexType;
  62     typedef typename ImageType::PointType    ImagePointType;
  63     typedef struct args_info_clitkRelativePosition ArgsInfoType;
  64     typedef SliceBySliceRelativePositionFilter<ImageType> SliceRelPosFilterType;
  65     typedef AddRelativePositionConstraintToLabelImageFilter<ImageType> RelPosFilterType;
  66
  67     /** ImageDimension constants */
  68     itkStaticConstMacro(ImageDimension, unsigned int, ImageType::ImageDimension);
  69     FILTERBASE_INIT;
  70
  71     itkGetConstMacro(BackgroundValue, ImagePixelType);
  72     itkGetConstMacro(ForegroundValue, ImagePixelType);
  73     itkSetMacro(BackgroundValue, ImagePixelType);
  74     itkSetMacro(ForegroundValue, ImagePixelType);
  75
  76     itkSetMacro(InputName, std::string);
  77     itkGetConstMacro(InputName, std::string);
  78
  79     itkGetConstMacro(ComputeOverlapFlag, bool);
  80     itkSetMacro(ComputeOverlapFlag, bool);
  81     itkBooleanMacro(ComputeOverlapFlag);
  82
  83     void Read(std::string filename);
  84     void SetFilterOptions(typename RelPosFilterType::Pointer filter, ArgsInfoType & options);
  85     void SetReferenceImageForOverlapMeasure(ImagePointer ref);
  86
  87   protected:
  88     RelativePositionList();
  89     virtual ~RelativePositionList() {}
  90
  91   private:
  92     RelativePositionList(const Self&); //purposely not implemented
  93     void operator=(const Self&); //purposely not implemented
  94
  95     void GenerateInputRequestedRegion();
  96     void GenerateOutputInformation();
  97     void GenerateData();
  98
  99     std::string m_InputName;
 100     ImagePixelType m_BackgroundValue;
 101     ImagePixelType m_ForegroundValue;
 102     typename SliceRelPosFilterType::Pointer mFilter;
 103     std::vector<ArgsInfoType> mArgsInfoList;
 104     ImagePointer m_working_input;
 105     ImagePointer m_reference;
 106     bool m_ComputeOverlapFlag;
 107
 108   }; // end class
 109   //--------------------------------------------------------------------
 110
 111 } // end namespace clitk
 112 //--------------------------------------------------------------------
 113
 114 #include "clitkRelativePositionList.txx"
 115
 116 #endif