2 # ---------------------------------------------------------------------
4 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
6 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
7 # Previous Authors : Laurent Guigues, Jean-Pierre Roux
8 # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
10 # This software is governed by the CeCILL-B license under French law and
11 # abiding by the rules of distribution of free software. You can use,
12 # modify and/ or redistribute the software under the terms of the CeCILL-B
13 # license as circulated by CEA, CNRS and INRIA at the following URL
14 # http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
15 # or in the file LICENSE.txt.
17 # As a counterpart to the access to the source code and rights to copy,
18 # modify and redistribute granted by the license, users are provided only
19 # with a limited warranty and the software's author, the holder of the
20 # economic rights, and the successive licensors have only limited
23 # The fact that you are presently reading this means that you have had
24 # knowledge of the CeCILL-B license and that you accept its terms.
25 # ------------------------------------------------------------------------
29 #include <creaImageIOImageReader.h>
30 #include <creaImageIOTreeAttributeDescriptor.h>
31 #include <creaImageIOSystem.h>
33 #include <creaImageIOVtkImageReader.h>
34 #if defined (USE_GDCM)
35 #include <creaImageIODicomImageReader.h>
37 #if defined(USE_GDCM2)
38 #include <creaImageIODicomImageReader2.h>
40 #include <creaImageIOUltrasonixImageReader.h>
41 #include <vtkPNGReader.h>
42 #include <vtkTIFFReader.h>
43 #include <vtkJPEGReader.h>
44 #include <vtkBMPReader.h>
45 #include <vtkSLCReader.h>
46 #include <vtkMetaImageReader.h>
47 //#include <vtkGESignalReader.h>
49 #include "boost/filesystem/path.hpp"
54 //=====================================================================
55 ImageReader::ImageReader()
57 mUnreadableImage(NULL),
58 mLastFilename("&&&&&&&&&&&&&&&&&&&&&&&&&&&&&")
60 // std::cout << "#### ImageReader::ImageReader()"<<std::endl;
61 if (mUnreadableImage!=NULL) return;
64 Register( boost::shared_ptr<AbstractImageReader>(new VtkImageReader(vtkPNGReader::New() , "PNG", ".png")));
65 Register(boost::shared_ptr<AbstractImageReader>(new VtkImageReader(vtkTIFFReader::New(), "TIFF", ".tiff")));
66 Register(boost::shared_ptr<AbstractImageReader>(new VtkImageReader(vtkJPEGReader::New(), "JPEG", ".jpeg")));
67 Register(boost::shared_ptr<AbstractImageReader>(new VtkImageReader(vtkBMPReader::New(), "BMP", ".bmp")));
68 Register(boost::shared_ptr<AbstractImageReader>(new VtkImageReader(vtkSLCReader::New())));
69 Register(boost::shared_ptr<AbstractImageReader>(new VtkImageReader(vtkMetaImageReader::New(),"MHD",".mhd")));
70 // Register(new VtkImageReader(vtkGESignalReader::New()));
71 Register(boost::shared_ptr<AbstractImageReader>(new DicomImageReader));
72 Register(boost::shared_ptr<AbstractImageReader>(new UltrasonixImageReader));
76 mUnreadableImage = vtkImageData::New();
78 dim[0] = dim[1] = 128;
80 mUnreadableImage->SetDimensions ( dim );
82 //EED 2017-01-01 Migration VTK7
83 #if VTK_MAJOR_VERSION <= 5
84 mUnreadableImage->SetScalarTypeToUnsignedChar();
85 mUnreadableImage->AllocateScalars();
87 mUnreadableImage->AllocateScalars(VTK_UNSIGNED_CHAR,1);
90 for (int i=0;i<dim[0];i++)
92 for (int j=0;j<dim[1];j++)
94 mUnreadableImage->SetScalarComponentFromFloat(i,j,0,0,0);
98 for (int i=0;i<dim[0];i++)
100 mUnreadableImage->SetScalarComponentFromFloat(i,i,0,0,255);
101 mUnreadableImage->SetScalarComponentFromFloat(dim[0]-1-i,i,0,0,255);
104 //=====================================================================
106 //=====================================================================
107 ImageReader::~ImageReader()
110 // for (i=mReader.begin(); i!=mReader.end(); i++)
115 if (mUnreadableImage!=NULL)
117 mUnreadableImage->Delete();
118 mUnreadableImage = NULL;
121 //=====================================================================
123 //=====================================================================
124 void ImageReader::Register(boost::shared_ptr<AbstractImageReader> r)
126 mReader.push_back(r);
129 void ImageReader::UnRegister(const std::string i_val)
131 mUnReader.push_back(i_val);
134 //=====================================================================
136 //=====================================================================
137 // Returns true iff the file is readable
138 bool ImageReader::ShallNotRead( const std::string& filename )
143 std::vector<std::string >::iterator i ;
144 for (i=mUnReader.begin(); i!=mUnReader.end(); i++)
146 if ( (*i).c_str() == filename)
156 //=====================================================================
157 // Returns true iff the file is readable
158 bool ImageReader::CanRead( const std::string& filename )
160 printf("EED ImageReader::CanRead Start\n");
164 if( !ShallNotRead(filename))
170 std::vector<boost::shared_ptr<AbstractImageReader> >::iterator i;
171 for (i=mReader.begin(); i!=mReader.end(); i++)
173 ok = (*i)->CanRead(filename);
176 mLastFilename = filename;
178 printf("EED ImageReader::CanRead %s\n",mLastReader->GetName().c_str());
183 if (ok==true) printf("EED ImageReader::CanRead true End\n");
184 if (ok==false) printf("EED ImageReader::CanRead false End\n");
187 //=====================================================================
189 //=====================================================================
190 // Reads the file (CanRead must be called before : no test here)
191 vtkImageData* ImageReader::ReadImage( const std::string& filename)
193 printf("EED ImageReader::ReadImage Start\n");
194 if (mLastFilename!=filename)
196 printf("EED ImageReader::ReadImage 1\n");
197 if (!CanRead(filename))
199 printf("EED ImageReader::ReadImage 2\n");
200 vtkImageData* im = vtkImageData::New();
201 im->ShallowCopy(mUnreadableImage);
202 printf("EED ImageReader::ReadImage END2\n");
205 } // for mLastFilename
206 printf("EED ImageReader::ReadImage 3\n");
207 vtkImageData* i = mLastReader->ReadImage(mLastFilename);
208 printf("EED ImageReader::ReadImage 4\n");
211 i = vtkImageData::New();
212 i->ShallowCopy(mUnreadableImage);
214 printf("EED ImageReader::ReadImage END1\n");
218 //=====================================================================
219 // Another function to read attributes for a file
220 void ImageReader::getAttributes(const std::string filename,
221 std::map <std::string , std::string> &infos, std::vector<std::string> i_attr)
223 if (mLastFilename!=filename)
225 if (!CanRead(filename))
230 mLastReader->getAttributes(filename, infos, i_attr);
232 //=====================================================================
233 void ImageReader::ReadAttributes(const std::string& filename,
234 std::map<std::string,std::string>& attr)
236 if (mLastFilename!=filename)
238 if (!CanRead(filename))
243 mLastReader->ReadAttributes(mLastFilename,attr);
245 //=====================================================================
248 //=====================================================================
249 /// Pushes back all kwown extensions (without dot) in the vector given
250 void ImageReader::PushBackExtensions(std::vector<std::string>& v)
252 std::vector<boost::shared_ptr<AbstractImageReader> >::iterator i;
253 for (i=mReader.begin(); i!=mReader.end(); i++)
255 (*i)->PushBackExtensions(v);
258 //=====================================================================
260 } // namespace creaImageIO