1 #include <creaImageIOTreeDescriptor.h>
2 #include <boost/algorithm/string/split.hpp>
3 #include <boost/algorithm/string/replace.hpp>
4 #include <creaImageIOSystem.h>
5 #include <boost/filesystem.hpp>
17 //==================================================================
18 /// The attribute is hidden (not visible to user)
19 const unsigned int AttributeDescriptor::PRIVATE = 1;
20 /// The attribute enters in unique identifier constitution
21 const unsigned int AttributeDescriptor::IDENTIFIER = 2;
22 /// The attribute can be edited
23 const unsigned int AttributeDescriptor::EDITABLE = 3;
24 const unsigned int AttributeDescriptor::LABEL = 4;
25 //==================================================================
27 //==================================================================
28 Descriptor::Descriptor()
30 CreateLevel0Descriptor();
32 //==================================================================
34 //==================================================================
35 Descriptor::~Descriptor()
38 //==================================================================
40 //==================================================================
41 void Descriptor::CreateLevel0Descriptor()
43 Add(LevelDescriptor("Root"));
45 //==================================================================
47 //==================================================================
48 /// Creates the default descriptor
49 void Descriptor::CreateDefault()
51 // clears the existing one
54 // Creates the level 0 descriptor
55 CreateLevel0Descriptor();
56 // Creates the attribute "Name"
57 Add(AttributeDescriptor("Name","Name",
58 AttributeDescriptor::LABEL),0);
61 Add(LevelDescriptor("Patient"));
62 Add(AttributeDescriptor("NumberOfChildren","#Series",0),1); // Number of Series
63 Add(AttributeDescriptor(0x0010,0x0010, // Patient name
64 AttributeDescriptor::LABEL),1);
65 Add(AttributeDescriptor(0x0010,0x0040),1); // Patient sex
66 Add(AttributeDescriptor(0x0010,0x0030),1); // Patient birthday
67 Add(AttributeDescriptor(0x0010,0x0020, // Patient ID
68 AttributeDescriptor::IDENTIFIER),1);
71 Add(LevelDescriptor("Series"));
72 Add(AttributeDescriptor("NumberOfChildren","#Images",0),2); // Number of images
73 Add(AttributeDescriptor(0x0008,0x0060, // Modality
74 AttributeDescriptor::LABEL),2);
75 Add(AttributeDescriptor(0x0008,0x1030),2); // Study Description
76 Add(AttributeDescriptor(0x0008,0x103E),2); // Description
77 Add(AttributeDescriptor(0x0008,0x0080),2); // Institution Name
78 Add(AttributeDescriptor(0x0008,0x0081),2); // Institution Adress
79 Add(AttributeDescriptor(0x0008,0x1010),2); // Station Name
80 Add(AttributeDescriptor(0x0008,0x1048),2); // Physician of Record
81 Add(AttributeDescriptor(0x0008,0x1050),2); // Performing Physician's Name
82 Add(AttributeDescriptor(0x0018,0x1030),2); // Protocol Name
84 Add(AttributeDescriptor(0x0020,0x0010),2); // Study ID
85 Add(AttributeDescriptor(0x0008,0x0020),2); // Study Date
86 Add(AttributeDescriptor(0x0008,0x0030),2); // Study Time
87 Add(AttributeDescriptor(0x0008,0x0050),2); // Study Accession Number
88 Add(AttributeDescriptor(0x0008,0x0005),2); // Specific character set
89 Add(AttributeDescriptor(0x0008,0x0021),2); // Series Date
90 Add(AttributeDescriptor(0x0008,0x0031),2); // Series time
92 Add(AttributeDescriptor(0x0020,0x000D // Study Instance UID
93 ),2);//AttributeDescriptor::IDENTIFIER),2);
94 Add(AttributeDescriptor(0x0020,0x000E, // Series Instance UID
95 AttributeDescriptor::IDENTIFIER),2);
97 // AttributeDescriptor::LABEL),2);
101 Add(LevelDescriptor("Image"));
103 Add(AttributeDescriptor(0x0020,0x0013),3); // Image Number
105 Add(AttributeDescriptor(0x0028,0x0010),3); // Rows
106 Add(AttributeDescriptor(0x0028,0x0011),3); // Columns
107 Add(AttributeDescriptor(0x0028,0x0012),3); // Planes
108 Add(AttributeDescriptor(0x0028,0x0002),3); // Sample per pixels
109 Add(AttributeDescriptor(0x0028,0x0008),3); // Number of Frames
110 Add(AttributeDescriptor(0x0028,0x0004),3); // Photometric Interpretation
111 Add(AttributeDescriptor(0x0028,0x0103),3); // Pixel Representation
113 Add(AttributeDescriptor(0x0020,0x0032),3); // Image Position Patient
114 Add(AttributeDescriptor(0x0020,0x0037),3); // Image Orientation Patient
115 Add(AttributeDescriptor(0x0020,0x1041),3); // Slice Location
116 Add(AttributeDescriptor(0x0028,0x0006),3); // Planar Configuration
118 Add(AttributeDescriptor(0x0028,0x0030),3); // Pixel Spacing
119 Add(AttributeDescriptor(0x0028,0x0100),3); // AlocatedBits
120 Add(AttributeDescriptor(0x0028,0x0101),3); // StoredBits
122 Add(AttributeDescriptor(0x0008,0x0008),3); // Image Type
123 Add(AttributeDescriptor(0x0008,0x0023),3); // Content Date
124 Add(AttributeDescriptor(0x0008,0x0033),3); // Content Time
126 Add(AttributeDescriptor(0x0020,0x4000),3); // Image Comments
128 Add(AttributeDescriptor(0x0004,0x1500, // File Name
129 AttributeDescriptor::LABEL),3);
130 Add(AttributeDescriptor(0x0028,0x1052),3); // Rescale Intercept
131 Add(AttributeDescriptor(0x0028,0x1053),3); // Rescale Slope
133 Add(AttributeDescriptor(0x0050,0x0004),3); // Calibration Image
135 Add(AttributeDescriptor(0x0020,0x0052 // Frame Reference UID
137 Add(AttributeDescriptor(0x0008,0x0016),3); // SOP Class UID
138 Add(AttributeDescriptor("FullFileName", // Full file name
140 AttributeDescriptor::IDENTIFIER),3);
145 //////////////////////////////////////////////////////////////
146 // create a descriptor (name, attributes...) from a file) //
147 // @param : file path //
149 //////////////////////////////////////////////////////////////
150 void Descriptor::createDescriptorfromFile(const std::string &i_name)
154 // read file and put in buffer
155 std::ifstream i_file(i_name.c_str());
156 std::stringstream buffer;
157 buffer << i_file.rdbuf();
163 while(std::getline(buffer, line))
166 { //increment levels.
172 // For each level, a name to describe it
173 Add(LevelDescriptor(line));
178 // split line to find all tags
179 std::vector<std::string> descriptors;
180 std::string separator = " ";
181 std::string::size_type last_pos = line.find_first_not_of(separator);
182 //find first separator
183 std::string::size_type pos = line.find_first_of(separator, last_pos);
184 while(std::string::npos != pos || std::string::npos != last_pos)
186 descriptors.push_back(line.substr(last_pos, pos - last_pos));
187 last_pos = line.find_first_not_of(separator, pos);
188 pos = line.find_first_of(separator, last_pos);
191 // By default, the last tag is at zero and not recorded but if take in count
192 unsigned int flag = 0;
193 if(descriptors.size() == 4)
195 std::stringstream val;
196 val << std::dec << descriptors[3];
200 // if Dicom tag, use "group" and "element" descriptor
201 if(descriptors[0] == "D")
202 { std::stringstream val, val2;
203 unsigned short group;
204 unsigned short element;
205 val << std::dec << descriptors[1] ;
206 val >> std::hex >> group;
207 val2 << std::dec << descriptors[2];
208 val2 >> std::hex >> element;
209 Add(AttributeDescriptor( group,element,flag), ilevel);
211 else // "O" means if user's own tag.
212 { boost::algorithm::replace_all(descriptors[2],"_"," ");
213 Add(AttributeDescriptor( descriptors[1].c_str(),descriptors[2].c_str(),flag), ilevel);
220 //==================================================================
222 //==================================================================
223 /// Adds a LevelDescriptor at the end of the list
224 void Descriptor::Add(const LevelDescriptor& d)
226 mLevelDescriptorList.push_back(d);
228 //==================================================================
230 //==================================================================
231 /// Adds an AttributeDescriptor to level l
232 void Descriptor::Add(const AttributeDescriptor& d, int l)
234 mLevelDescriptorList[l].Add(d);
235 // TO DO : update DicomTagToName and NameToDicomTag map
237 //==================================================================
239 //==================================================================
240 /// Clears the Descriptor
241 void Descriptor::Clear()
243 mLevelDescriptorList.clear();
245 //==================================================================
247 //==================================================================
248 /// Builds the key to value map of all the attributes of the tree
249 void Descriptor::BuildAttributeMap( std::map<std::string,std::string>& map ) const
252 LevelDescriptorListType::const_iterator l;
253 for (l = GetLevelDescriptorList().begin();
254 l!= GetLevelDescriptorList().end();
257 LevelDescriptor::AttributeDescriptorListType::const_iterator a;
258 for (a = l->GetAttributeDescriptorList().begin();
259 a!= l->GetAttributeDescriptorList().end();