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[clitk.git] / tools / CMakeLists.txt
1 #=========================================================
2 INCLUDE(${PROJECT_SOURCE_DIR}/cmake/common.cmake)
3 #=========================================================
4 #Add your ggo files to this list if they are used by vv
5 FOREACH(clitkTool clitkAffineTransform clitkBinarizeImage clitkImageArithm
6         clitkMedianImageFilter clitkImageConvert clitkImageResample clitkCropImage
7         clitkMIP)
8     WRAP_GGO(${clitkTool}_GGO_C ${clitkTool}.ggo)
9     SET(GGO_C_FILES ${GGO_C_FILES} ${${clitkTool}_GGO_C})
10 ENDFOREACH(clitkTool)
11 ADD_LIBRARY(clitkToolsGgoLib ${GGO_C_FILES})
12
13 #=========================================================
14 #the libraries avoid recompilation for vv, and should be used for generic filters
15 #with long compilation times that are used by vv
16 ADD_LIBRARY(clitkImageConvertLib clitkImageConvertGenericFilter.cxx)
17 ADD_LIBRARY(clitkImageResampleLib clitkImageResampleGenericFilter.cxx)
18 ADD_LIBRARY(clitkBinarizeImageLib clitkBinarizeImageGenericFilter.cxx)
19 ADD_LIBRARY(clitkImageArithmImageLib clitkImageArithmGenericFilter.cxx)
20 ADD_LIBRARY(clitkMIPLib clitkMIPGenericFilter.cxx)
21
22 TARGET_LINK_LIBRARIES(clitkBinarizeImageLib clitkToolsGgoLib)
23
24 IF (CLITK_BUILD_TOOLS)
25     WRAP_GGO(clitkDicomInfo_GGO_C clitkDicomInfo.ggo)
26     ADD_EXECUTABLE(clitkDicomInfo clitkDicomInfo.cxx ${clitkDicomInfo_GGO_C})
27     TARGET_LINK_LIBRARIES(clitkDicomInfo clitkCommon ITKIO)
28
29     WRAP_GGO(clitkDicom2Image_GGO_C clitkDicom2Image.ggo)
30     ADD_EXECUTABLE(clitkDicom2Image clitkDicom2Image.cxx ${clitkDicom2Image_GGO_C})
31     TARGET_LINK_LIBRARIES(clitkDicom2Image clitkCommon ITKIO)
32
33     WRAP_GGO(clitkImageInfo_GGO_C clitkImageInfo.ggo)
34     ADD_EXECUTABLE(clitkImageInfo clitkImageInfo.cxx ${clitkImageInfo_GGO_C})
35     TARGET_LINK_LIBRARIES(clitkImageInfo clitkCommon ITKIO)
36
37     ADD_EXECUTABLE(clitkImageConvert clitkImageConvert.cxx ${clitkImageConvert_GGO_C})
38     TARGET_LINK_LIBRARIES(clitkImageConvert clitkImageConvertLib clitkCommon ITKIO)
39
40     ADD_EXECUTABLE(clitkBinarizeImage clitkBinarizeImage.cxx
41        ${clitkBinarizeImage_GGO_C})
42     TARGET_LINK_LIBRARIES(clitkBinarizeImage clitkBinarizeImageLib clitkCommon ITKIO)
43
44     # ADD_EXECUTABLE(clitkImageResample clitkImageResample.cxx
45     # ${clitkImageResample_GGO_C})
46     # TARGET_LINK_LIBRARIES(clitkImageResample clitkImageResampleLib clitkCommon ITKIO )
47
48     WRAP_GGO(clitkVFResample_GGO_C clitkImageResample.ggo)
49     ADD_EXECUTABLE(clitkVFResample clitkVFResample.cxx clitkVFResampleGenericFilter.cxx ${clitkVFResample_GGO_C})
50     TARGET_LINK_LIBRARIES(clitkVFResample clitkCommon ITKIO)
51
52     WRAP_GGO(clitkImageCreate_GGO_C clitkImageCreate.ggo)
53     ADD_EXECUTABLE(clitkImageCreate clitkImageCreate.cxx ${clitkImageCreate_GGO_C})
54     TARGET_LINK_LIBRARIES(clitkImageCreate clitkCommon  ITKIO)
55
56     WRAP_GGO(clitkZeroVF_GGO_C clitkZeroVF.ggo)
57     ADD_EXECUTABLE(clitkZeroVF clitkZeroVF.cxx ${clitkZeroVF_GGO_C} clitkZeroVFGenericFilter.cxx)
58     TARGET_LINK_LIBRARIES(clitkZeroVF clitkCommon  ITKIO)
59
60     WRAP_GGO(clitkImageExtractLine_GGO_C clitkImageExtractLine.ggo)
61     ADD_EXECUTABLE(clitkImageExtractLine clitkImageExtractLine.cxx ${clitkImageExtractLine_GGO_C})
62     TARGET_LINK_LIBRARIES(clitkImageExtractLine clitkCommon  ITKIO)
63
64     WRAP_GGO(clitkSplitImage_GGO_C clitkSplitImage.ggo)
65     ADD_EXECUTABLE(clitkSplitImage clitkSplitImage.cxx clitkSplitImageGenericFilter.cxx ${clitkSplitImage_GGO_C})
66     TARGET_LINK_LIBRARIES(clitkSplitImage clitkCommon ITKIO )
67
68     WRAP_GGO(clitkVFMerge_GGO_C clitkVFMerge.ggo)
69     ADD_EXECUTABLE(clitkVFMerge clitkVFMerge.cxx ${clitkVFMerge_GGO_C})
70     TARGET_LINK_LIBRARIES(clitkVFMerge ITKBasicFilters clitkCommon ITKIO)
71
72     WRAP_GGO(clitkWriteDicomSeries_GGO_C clitkWriteDicomSeries.ggo)
73     ADD_EXECUTABLE(clitkWriteDicomSeries clitkWriteDicomSeries.cxx ${clitkWriteDicomSeries_GGO_C})
74     TARGET_LINK_LIBRARIES(clitkWriteDicomSeries clitkCommon ITKIO )
75
76     WRAP_GGO(clitkAverageTemporalDimension_GGO_C clitkAverageTemporalDimension.ggo)
77     ADD_EXECUTABLE(clitkAverageTemporalDimension clitkAverageTemporalDimension.cxx ${clitkAverageTemporalDimension_GGO_C})
78     TARGET_LINK_LIBRARIES(clitkAverageTemporalDimension clitkCommon ITKIO )
79
80     WRAP_GGO(clitkMedianTemporalDimension_GGO_C clitkMedianTemporalDimension.ggo)
81     ADD_EXECUTABLE(clitkMedianTemporalDimension clitkMedianTemporalDimension.cxx
82         ${clitkMedianTemporalDimension_GGO_C})
83     TARGET_LINK_LIBRARIES(clitkMedianTemporalDimension clitkCommon ITKIO )
84
85     WRAP_GGO(clitkWarpImage_GGO_C clitkWarpImage.ggo)
86     ADD_EXECUTABLE(clitkWarpImage clitkWarpImage.cxx ${clitkWarpImage_GGO_C} clitkWarpImageGenericFilter.cxx)
87     TARGET_LINK_LIBRARIES(clitkWarpImage ITKBasicFilters clitkCommon ITKIO)
88
89     WRAP_GGO(clitkInvertVF_GGO_C clitkInvertVF.ggo)
90     ADD_EXECUTABLE(clitkInvertVF clitkInvertVF.cxx ${clitkInvertVF_GGO_C})
91     TARGET_LINK_LIBRARIES(clitkInvertVF clitkCommon ITKIO )
92
93     ADD_EXECUTABLE(clitkAffineTransform clitkAffineTransform.cxx ${clitkAffineTransform_GGO_C})
94     TARGET_LINK_LIBRARIES(clitkAffineTransform clitkCommon ITKIO )
95
96     WRAP_GGO(clitkSetBackground_GGO_C clitkSetBackground.ggo)
97     ADD_EXECUTABLE(clitkSetBackground clitkSetBackground.cxx clitkSetBackgroundGenericFilter.cxx ${clitkSetBackground_GGO_C})
98     TARGET_LINK_LIBRARIES(clitkSetBackground clitkCommon ITKIO)
99
100     WRAP_GGO(clitkGuerreroVentilation_GGO_C clitkGuerreroVentilation.ggo)
101     ADD_EXECUTABLE(clitkGuerreroVentilation clitkGuerreroVentilation.cxx clitkGuerreroVentilationGenericFilter.cxx ${clitkGuerreroVentilation_GGO_C})
102     TARGET_LINK_LIBRARIES(clitkGuerreroVentilation clitkCommon ITKIO)
103
104     ADD_EXECUTABLE(clitkImageArithm clitkImageArithm.cxx ${clitkImageArithm_GGO_C})
105     TARGET_LINK_LIBRARIES(clitkImageArithm clitkImageArithmImageLib clitkCommon ITKIO )
106
107     WRAP_GGO(clitkUnsharpMask_GGO_C clitkUnsharpMask.ggo)
108     ADD_EXECUTABLE(clitkUnsharpMask clitkUnsharpMask.cxx ${clitkUnsharpMask_GGO_C})
109     TARGET_LINK_LIBRARIES(clitkUnsharpMask clitkCommon ITKIO ) 
110
111     WRAP_GGO(clitkFooImage_GGO_C clitkFooImage.ggo)
112     ADD_EXECUTABLE(clitkFooImage clitkFooImage.cxx ${clitkFooImage_GGO_C})
113     TARGET_LINK_LIBRARIES(clitkFooImage clitkCommon ITKIO ) 
114
115     ADD_EXECUTABLE(clitkMedianImageFilter clitkMedianImageFilter.cxx ${clitkMedianImageFilter_GGO_C})
116     TARGET_LINK_LIBRARIES(clitkMedianImageFilter clitkCommon ITKIO ITKBasicFilters )
117
118     WRAP_GGO(clitkResampleImage_GGO_C clitkResampleImage.ggo)
119     ADD_EXECUTABLE(clitkResampleImage clitkResampleImage.cxx clitkResampleImageGenericFilter.cxx ${clitkResampleImage_GGO_C})
120     TARGET_LINK_LIBRARIES(clitkResampleImage clitkCommon ITKIO)
121
122     WRAP_GGO(clitkMinMaxMask_GGO_C clitkMinMaxMask.ggo)
123     ADD_EXECUTABLE(clitkMinMaxMask clitkMinMaxMask.cxx ${clitkMinMaxMask_GGO_C})
124     TARGET_LINK_LIBRARIES(clitkMinMaxMask clitkCommon ITKIO  )
125
126     # WRAP_GGO(clitkAutoCrop_GGO_C clitkAutoCrop.ggo)
127     # ADD_EXECUTABLE(clitkAutoCrop clitkAutoCrop.cxx ${clitkAutoCrop_GGO_C})
128     # TARGET_LINK_LIBRARIES(clitkAutoCrop clitkCommon ITKIO )
129
130     WRAP_GGO(clitkDicomRTStruct2BinaryImage_GGO_C clitkDicomRTStruct2BinaryImage.ggo)
131     ADD_EXECUTABLE(clitkDicomRTStruct2BinaryImage clitkDicomRT_ROI_ConvertToImageFilter.cxx clitkDicomRTStruct2BinaryImage.cxx ${clitkDicomRTStruct2BinaryImage_GGO_C})
132     TARGET_LINK_LIBRARIES(clitkDicomRTStruct2BinaryImage ITKCommon clitkDicomRTStruct clitkCommon ITKIO )
133
134     WRAP_GGO(clitkImageLog_GGO_C clitkImageLog.ggo)
135     ADD_EXECUTABLE(clitkImageLog clitkImageLog.cxx ${clitkImageLog_GGO_C})
136     TARGET_LINK_LIBRARIES(clitkImageLog  ITKIO clitkCommon)
137
138     WRAP_GGO(clitkFilter_GGO_C clitkFilter.ggo)
139     ADD_EXECUTABLE(clitkFilter clitkFilter.cxx clitkFilterGenericFilter.cxx ${clitkFilter_GGO_C})
140     TARGET_LINK_LIBRARIES(clitkFilter ITKIO clitkCommon)
141
142     WRAP_GGO(clitkConeBeamProjectImage_GGO_C clitkConeBeamProjectImage.ggo)
143     ADD_EXECUTABLE(clitkConeBeamProjectImage clitkConeBeamProjectImage.cxx clitkConeBeamProjectImageGenericFilter.cxx ${clitkConeBeamProjectImage_GGO_C})
144     TARGET_LINK_LIBRARIES(clitkConeBeamProjectImage  ITKIO clitkCommon )
145
146     WRAP_GGO(clitkComposeVF_GGO_C clitkComposeVF.ggo)
147     ADD_EXECUTABLE(clitkComposeVF clitkComposeVFGenericFilter.cxx clitkComposeVF.cxx ${clitkComposeVF_GGO_C})
148     TARGET_LINK_LIBRARIES(clitkComposeVF ITKBasicFilters ITKIO clitkCommon)
149
150     WRAP_GGO(clitkMergeSequence_GGO_C clitkMergeSequence.ggo)
151     ADD_EXECUTABLE(clitkMergeSequence clitkMergeSequence.cxx clitkMergeSequenceGenericFilter.cxx ${clitkMergeSequence_GGO_C})
152     TARGET_LINK_LIBRARIES(clitkMergeSequence ITKIO clitkCommon)
153
154     WRAP_GGO(clitkBackProjectImage_GGO_C clitkBackProjectImage.ggo)
155     ADD_EXECUTABLE(clitkBackProjectImage clitkBackProjectImage.cxx clitkBackProjectImageGenericFilter.cxx ${clitkBackProjectImage_GGO_C})
156     TARGET_LINK_LIBRARIES(clitkBackProjectImage ITKIO clitkCommon )
157
158 #    WRAP_GGO(clitkCropImage_GGO_C clitkCropImage.ggo)
159     ADD_EXECUTABLE(clitkCropImage clitkCropImage.cxx ${clitkCropImage_GGO_C})
160     TARGET_LINK_LIBRARIES(clitkCropImage clitkCommon ITKIO)
161
162 # WRAP_GGO(clitkExtractSlice_GGO_C clitkExtractSlice.ggo)
163 # ADD_EXECUTABLE(clitkExtractSlice clitkExtractSlice.cxx clitkExtractSliceGenericFilter.cxx ${clitkExtractSlice_GGO_C})
164 # TARGET_LINK_LIBRARIES(clitkExtractSlice clitkCommon ITKIO)
165
166     WRAP_GGO(clitkFlipImage_GGO_C clitkFlipImage.ggo)
167     ADD_EXECUTABLE(clitkFlipImage clitkFlipImage.cxx clitkFlipImageGenericFilter.cxx ${clitkFlipImage_GGO_C})
168     TARGET_LINK_LIBRARIES(clitkFlipImage clitkCommon ITKIO)
169
170     WRAP_GGO(clitkMirrorPadImage_GGO_C clitkMirrorPadImage.ggo)
171     ADD_EXECUTABLE(clitkMirrorPadImage clitkMirrorPadImage.cxx clitkMirrorPadImageGenericFilter.cxx ${clitkMirrorPadImage_GGO_C})
172     TARGET_LINK_LIBRARIES(clitkMirrorPadImage clitkCommon ITKIO)
173
174     WRAP_GGO(clitkImageMoment_GGO_C clitkImageMoment.ggo)
175     ADD_EXECUTABLE(clitkImageMoment clitkImageMoment.cxx clitkImageMomentGenericFilter.cxx ${clitkImageMoment_GGO_C})
176     TARGET_LINK_LIBRARIES(clitkImageMoment clitkCommon ITKIO)
177
178     WRAP_GGO(clitkImageStatistics_GGO_C clitkImageStatistics.ggo)
179     ADD_EXECUTABLE(clitkImageStatistics clitkImageStatistics.cxx clitkImageStatisticsGenericFilter.cxx ${clitkImageStatistics_GGO_C})
180     TARGET_LINK_LIBRARIES(clitkImageStatistics clitkCommon ITKIO ITKStatistics)
181
182     WRAP_GGO(clitkSetOrigin_GGO_C clitkSetOrigin.ggo)
183     ADD_EXECUTABLE(clitkSetOrigin clitkSetOrigin.cxx clitkSetOriginGenericFilter.cxx ${clitkSetOrigin_GGO_C})
184     TARGET_LINK_LIBRARIES(clitkSetOrigin clitkCommon ITKIO )
185      
186     WRAP_GGO(clitkGetOrigin_GGO_C clitkGetOrigin.ggo)
187     ADD_EXECUTABLE(clitkGetOrigin clitkGetOrigin.cxx clitkGetOriginGenericFilter.cxx ${clitkGetOrigin_GGO_C})
188     TARGET_LINK_LIBRARIES(clitkGetOrigin clitkCommon ITKIO )
189
190     WRAP_GGO(clitkGetDirection_GGO_C clitkGetDirection.ggo)
191     ADD_EXECUTABLE(clitkGetDirection clitkGetDirection.cxx clitkGetDirectionGenericFilter.cxx ${clitkGetDirection_GGO_C})
192     TARGET_LINK_LIBRARIES(clitkGetDirection clitkCommon ITKIO)
193
194     WRAP_GGO(clitkSetDirection_GGO_C clitkSetDirection.ggo)
195     ADD_EXECUTABLE(clitkSetDirection clitkSetDirection.cxx clitkSetDirectionGenericFilter.cxx ${clitkSetDirection_GGO_C})
196     TARGET_LINK_LIBRARIES(clitkSetDirection clitkCommon ITKIO)
197
198     WRAP_GGO(clitkGetSize_GGO_C clitkGetSize.ggo)
199     ADD_EXECUTABLE(clitkGetSize  clitkGetSize.cxx clitkGetSizeGenericFilter.cxx ${clitkGetSize_GGO_C})
200     TARGET_LINK_LIBRARIES(clitkGetSize  clitkCommon   ITKIO)
201
202     WRAP_GGO(clitkGetSpacing_GGO_C clitkGetSpacing.ggo)
203     ADD_EXECUTABLE(clitkGetSpacing  clitkGetSpacing.cxx clitkGetSpacingGenericFilter.cxx ${clitkGetSpacing_GGO_C})
204     TARGET_LINK_LIBRARIES(clitkGetSpacing  clitkCommon   ITKIO)
205
206     WRAP_GGO(clitkSetSpacing_GGO_C clitkSetSpacing.ggo)
207     ADD_EXECUTABLE(clitkSetSpacing  clitkSetSpacing.cxx clitkSetSpacingGenericFilter.cxx ${clitkSetSpacing_GGO_C})
208     TARGET_LINK_LIBRARIES(clitkSetSpacing  clitkCommon   ITKIO)
209
210     WRAP_GGO(clitkCombineImage_GGO_C clitkCombineImage.ggo)
211     ADD_EXECUTABLE(clitkCombineImage clitkCombineImage.cxx clitkCombineImageGenericFilter.cxx ${clitkCombineImage_GGO_C})
212     TARGET_LINK_LIBRARIES(clitkCombineImage clitkCommon ITKIO)
213
214     WRAP_GGO(clitkPermuteAxes_GGO_C clitkPermuteAxes.ggo)
215     ADD_EXECUTABLE(clitkPermuteAxes clitkPermuteAxes.cxx clitkPermuteAxesGenericFilter.cxx ${clitkPermuteAxes_GGO_C})
216     TARGET_LINK_LIBRARIES(clitkPermuteAxes clitkCommon ITKIO)
217
218     WRAP_GGO(clitkChangeImageOrientation_GGO_C clitkChangeImageOrientation.ggo)
219     ADD_EXECUTABLE(clitkChangeImageOrientation clitkChangeImageOrientation.cxx clitkChangeImageOrientationGenericFilter.cxx ${clitkChangeImageOrientation_GGO_C})
220     TARGET_LINK_LIBRARIES(clitkChangeImageOrientation clitkCommon ITKIO)
221
222     WRAP_GGO(clitkVFConvert_GGO_C clitkVFConvert.ggo)
223     ADD_EXECUTABLE(clitkVFConvert clitkVFConvert.cxx clitkVFConvertGenericFilter.cxx ${clitkVFConvert_GGO_C})
224     TARGET_LINK_LIBRARIES(clitkVFConvert ITKBasicFilters ITKIO clitkCommon )
225
226     WRAP_GGO(clitkImageToVectorImage_GGO_C clitkImageToVectorImage.ggo)
227     ADD_EXECUTABLE(clitkImageToVectorImage  clitkImageToVectorImage.cxx clitkImageToVectorImageGenericFilter.cxx ${clitkImageToVectorImage_GGO_C})
228     TARGET_LINK_LIBRARIES(clitkImageToVectorImage  clitkCommon   ITKIO)
229
230     WRAP_GGO(clitkVectorImageToImage_GGO_C clitkVectorImageToImage.ggo)
231     ADD_EXECUTABLE(clitkVectorImageToImage  clitkVectorImageToImage.cxx clitkVectorImageToImageGenericFilter.cxx ${clitkVectorImageToImage_GGO_C})
232     TARGET_LINK_LIBRARIES(clitkVectorImageToImage  clitkCommon   ITKIO)
233
234     WRAP_GGO(clitkBSplineCoefficientsToValues_GGO_C clitkBSplineCoefficientsToValues.ggo)
235     ADD_EXECUTABLE(clitkBSplineCoefficientsToValues  clitkBSplineCoefficientsToValues.cxx clitkBSplineCoefficientsToValuesGenericFilter.cxx ${clitkBSplineCoefficientsToValues_GGO_C})
236     TARGET_LINK_LIBRARIES(clitkBSplineCoefficientsToValues  clitkCommon   ITKIO)
237
238     WRAP_GGO(clitkValuesToBSplineCoefficients_GGO_C clitkValuesToBSplineCoefficients.ggo)
239     ADD_EXECUTABLE(clitkValuesToBSplineCoefficients  clitkValuesToBSplineCoefficients.cxx clitkValuesToBSplineCoefficientsGenericFilter.cxx ${clitkValuesToBSplineCoefficients_GGO_C})
240     TARGET_LINK_LIBRARIES(clitkValuesToBSplineCoefficients clitkCommon ITKIO)
241
242     WRAP_GGO(clitkMIP_GGO_C clitkMIP.ggo)
243     ADD_EXECUTABLE(clitkMIP  clitkMIP.cxx clitkMIPGenericFilter.cxx ${clitkMIP_GGO_C})
244     TARGET_LINK_LIBRARIES(clitkMIP clitkCommon ITKIO)
245
246     WRAP_GGO(clitkRelativePosition_GGO_C clitkRelativePosition.ggo)
247     ADD_EXECUTABLE(clitkRelativePosition  clitkRelativePosition.cxx ${clitkRelativePosition_GGO_C})
248     TARGET_LINK_LIBRARIES(clitkRelativePosition clitkCommon ITKIO)
249
250 ENDIF(CLITK_BUILD_TOOLS)