tools/CMakeLists.txt

   1 #=========================================================
   2 # Add Libraries used in vv and clitk to avoid recompilation
   3 WRAP_GGO(clitkCropImage_GGO_C clitkCropImage.ggo)
   4 add_library(clitkCropImageLib clitkCropImageGenericFilter.cxx ${clitkCropImage_GGO_C})
   5
   6 WRAP_GGO(clitkImageConvert_GGO_C clitkImageConvert.ggo)
   7 add_library(clitkImageConvertLib clitkImageConvertGenericFilter.cxx ${clitkImageConvert_GGO_C})
   8
   9 WRAP_GGO(clitkBinarizeImage_GGO_C clitkBinarizeImage.ggo)
  10 add_library(clitkBinarizeImageLib clitkBinarizeImageGenericFilter.cxx ${clitkBinarizeImage_GGO_C})
  11
  12 WRAP_GGO(clitkProfileImage_GGO_C clitkProfileImage.ggo)
  13 add_library(clitkProfileImageLib clitkProfileImageGenericFilter.cxx ${clitkProfileImage_GGO_C})
  14
  15 WRAP_GGO(clitkHistogramImage_GGO_C clitkHistogramImage.ggo)
  16 add_library(clitkHistogramImageLib clitkHistogramImageGenericFilter.cxx ${clitkHistogramImage_GGO_C})
  17
  18 WRAP_GGO(clitkImageArithm_GGO_C clitkImageArithm.ggo)
  19 add_library(clitkImageArithmImageLib clitkImageArithmGenericFilter.cxx ${clitkImageArithm_GGO_C})
  20
  21 WRAP_GGO(clitkVectorArithm_GGO_C clitkVectorArithm.ggo)
  22 add_library(clitkVectorArithmLib clitkVectorArithmGenericFilter.cxx ${clitkVectorArithm_GGO_C})
  23
  24 WRAP_GGO(clitkResampleImage_GGO_C clitkResampleImage.ggo)
  25 add_library(clitkResampleImageLib clitkResampleImageGenericFilter.cxx ${clitkResampleImage_GGO_C})
  26
  27 WRAP_GGO(clitkMIP_GGO_C clitkMIP.ggo)
  28 add_library(clitkMIPLib clitkMIPGenericFilter.cxx ${clitkMIP_GGO_C})
  29
  30 WRAP_GGO(clitkMedianImageFilter_GGO_C clitkMedianImageFilter.ggo)
  31 add_library(clitkMedianImageFilterLib clitkMedianImageGenericFilter.cxx ${clitkMedianImageFilter_GGO_C})
  32
  33 #=========================================================
  34 if(CLITK_BUILD_TOOLS)
  35
  36   WRAP_GGO(clitkDicomInfo_GGO_C clitkDicomInfo.ggo)
  37   add_executable(clitkDicomInfo clitkDicomInfo.cxx ${clitkDicomInfo_GGO_C})
  38   target_link_libraries(clitkDicomInfo clitkCommon)
  39   # set_target_properties(clitkDicomInfo
  40   #   PROPERTIES
  41   #   LINK_INTERFACE_LIBRARIES ""
  42   #   )
  43   set(TOOLS_INSTALL clitkDicomInfo)
  44
  45   WRAP_GGO(clitkDicom2Image_GGO_C clitkDicom2Image.ggo)
  46   add_executable(clitkDicom2Image clitkDicom2Image.cxx ${clitkDicom2Image_GGO_C})
  47   target_link_libraries(clitkDicom2Image clitkCommon)
  48   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicom2Image)
  49
  50   WRAP_GGO(clitkDicomWave2Text_GGO_C clitkDicomWave2Text.ggo)
  51   add_executable(clitkDicomWave2Text clitkDicomWave2Text.cxx ${clitkDicomWave2Text_GGO_C})
  52   target_link_libraries(clitkDicomWave2Text clitkCommon)
  53   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomWave2Text)
  54
  55   WRAP_GGO(clitkImageInfo_GGO_C clitkImageInfo.ggo)
  56   add_executable(clitkImageInfo clitkImageInfo.cxx ${clitkImageInfo_GGO_C})
  57   target_link_libraries(clitkImageInfo clitkCommon)
  58   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageInfo)
  59
  60   add_executable(clitkImageConvert clitkImageConvert.cxx)
  61   target_link_libraries(clitkImageConvert clitkImageConvertLib clitkCommon)
  62   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageConvert)
  63
  64   add_executable(clitkBinarizeImage clitkBinarizeImage.cxx)
  65   target_link_libraries(clitkBinarizeImage clitkBinarizeImageLib clitkCommon)
  66   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBinarizeImage)
  67
  68
  69   add_executable(clitkProfileImage clitkProfileImage.cxx)
  70   target_link_libraries(clitkProfileImage clitkProfileImageLib clitkCommon)
  71   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkProfileImage)
  72
  73   WRAP_GGO(clitkVFResample_GGO_C clitkVFResample.ggo)
  74   add_executable(clitkVFResample clitkVFResample.cxx clitkVFResampleGenericFilter.cxx ${clitkVFResample_GGO_C})
  75   target_link_libraries(clitkVFResample clitkCommon)
  76   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVFResample)
  77
  78   WRAP_GGO(clitkVFInterpolate_GGO_C clitkVFInterpolate.ggo)
  79   add_executable(clitkVFInterpolate clitkVFInterpolate.cxx clitkVFInterpolateGenericFilter.cxx ${clitkVFInterpolate_GGO_C})
  80   target_link_libraries(clitkVFInterpolate clitkCommon)
  81   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVFInterpolate)
  82
  83   WRAP_GGO(clitkImageCreate_GGO_C clitkImageCreate.ggo)
  84   add_executable(clitkImageCreate clitkImageCreate.cxx ${clitkImageCreate_GGO_C})
  85   target_link_libraries(clitkImageCreate clitkCommon)
  86   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageCreate)
  87
  88   WRAP_GGO(clitkZeroVF_GGO_C clitkZeroVF.ggo)
  89   add_executable(clitkZeroVF clitkZeroVF.cxx ${clitkZeroVF_GGO_C} clitkZeroVFGenericFilter.cxx)
  90   target_link_libraries(clitkZeroVF clitkCommon)
  91   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkZeroVF)
  92
  93   WRAP_GGO(clitkSplitImage_GGO_C clitkSplitImage.ggo)
  94   add_executable(clitkSplitImage clitkSplitImage.cxx clitkSplitImageGenericFilter.cxx ${clitkSplitImage_GGO_C})
  95   target_link_libraries(clitkSplitImage clitkCommon )
  96   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSplitImage)
  97
  98   WRAP_GGO(clitkWriteDicomSeries_GGO_C clitkWriteDicomSeries.ggo)
  99   add_executable(clitkWriteDicomSeries clitkWriteDicomSeries.cxx ${clitkWriteDicomSeries_GGO_C})
 100   target_link_libraries(clitkWriteDicomSeries clitkCommon )
 101   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkWriteDicomSeries)
 102
 103   WRAP_GGO(clitkGateSimulation2Dicom_GGO_C clitkGateSimulation2Dicom.ggo)
 104   add_executable(clitkGateSimulation2Dicom clitkGateSimulation2Dicom.cxx ${clitkGateSimulation2Dicom_GGO_C})
 105   target_link_libraries(clitkGateSimulation2Dicom clitkCommon )
 106   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkGateSimulation2Dicom)
 107
 108   WRAP_GGO(clitkPartitionEnergyWindowDicom_GGO_C clitkPartitionEnergyWindowDicom.ggo)
 109   add_executable(clitkPartitionEnergyWindowDicom clitkPartitionEnergyWindowDicom.cxx ${clitkPartitionEnergyWindowDicom_GGO_C})
 110   target_link_libraries(clitkPartitionEnergyWindowDicom clitkCommon )
 111   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkPartitionEnergyWindowDicom)
 112
 113   WRAP_GGO(clitkUpdateVRTagDicom_GGO_C clitkUpdateVRTagDicom.ggo)
 114   add_executable(clitkUpdateVRTagDicom clitkUpdateVRTagDicom.cxx ${clitkUpdateVRTagDicom_GGO_C})
 115   target_link_libraries(clitkUpdateVRTagDicom clitkCommon )
 116   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkUpdateVRTagDicom)
 117
 118   WRAP_GGO(clitkImage2DicomDose_GGO_C clitkImage2DicomDose.ggo)
 119   add_executable(clitkImage2DicomDose clitkImage2DicomDose.cxx ${clitkImage2DicomDose_GGO_C})
 120   target_link_libraries(clitkImage2DicomDose clitkCommon)
 121   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImage2DicomDose)
 122
 123   WRAP_GGO(clitkMedianTemporalDimension_GGO_C clitkMedianTemporalDimension.ggo)
 124   add_executable(clitkMedianTemporalDimension clitkMedianTemporalDimension.cxx
 125     ${clitkMedianTemporalDimension_GGO_C})
 126   target_link_libraries(clitkMedianTemporalDimension clitkCommon )
 127   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMedianTemporalDimension)
 128
 129   WRAP_GGO(clitkWarpImage_GGO_C clitkWarpImage.ggo)
 130   add_executable(clitkWarpImage clitkWarpImage.cxx ${clitkWarpImage_GGO_C} clitkWarpImageGenericFilter.cxx)
 131   target_link_libraries(clitkWarpImage clitkCommon)
 132   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkWarpImage)
 133
 134   WRAP_GGO(clitkInvertVF_GGO_C clitkInvertVF.ggo)
 135   add_executable(clitkInvertVF clitkInvertVF.cxx ${clitkInvertVF_GGO_C})
 136   target_link_libraries(clitkInvertVF clitkCommon)
 137   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkInvertVF)
 138
 139   WRAP_GGO(clitkAffineTransform_GGO_C clitkAffineTransform.ggo)
 140   add_executable(clitkAffineTransform clitkAffineTransform.cxx ${clitkAffineTransform_GGO_C})
 141   target_link_libraries(clitkAffineTransform clitkCommon )
 142   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAffineTransform)
 143
 144   WRAP_GGO(clitkElastixTransformToMatrix_GGO_C clitkElastixTransformToMatrix.ggo)
 145   add_executable(clitkElastixTransformToMatrix clitkElastixTransformToMatrix.cxx ${clitkElastixTransformToMatrix_GGO_C})
 146   target_link_libraries(clitkElastixTransformToMatrix clitkCommon )
 147   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkElastixTransformToMatrix)
 148
 149   WRAP_GGO(clitkMatrixToElastixTransform_GGO_C clitkMatrixToElastixTransform.ggo)
 150   add_executable(clitkMatrixToElastixTransform clitkMatrixToElastixTransform.cxx ${clitkMatrixToElastixTransform_GGO_C})
 151   target_link_libraries(clitkMatrixToElastixTransform clitkCommon )
 152   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMatrixToElastixTransform)
 153
 154   WRAP_GGO(clitkMatrixMultiply_GGO_C clitkMatrixMultiply.ggo)
 155   add_executable(clitkMatrixMultiply clitkMatrixMultiply.cxx ${clitkMatrixMultiply_GGO_C})
 156   target_link_libraries(clitkMatrixMultiply clitkCommon )
 157   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMatrixMultiply)
 158
 159   WRAP_GGO(clitkMatrixInverse_GGO_C clitkMatrixInverse.ggo)
 160   add_executable(clitkMatrixInverse clitkMatrixInverse.cxx ${clitkMatrixInverse_GGO_C})
 161   target_link_libraries(clitkMatrixInverse clitkCommon )
 162   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMatrixInverse)
 163
 164   WRAP_GGO(clitkSetBackground_GGO_C clitkSetBackground.ggo)
 165   add_executable(clitkSetBackground clitkSetBackground.cxx clitkSetBackgroundGenericFilter.cxx ${clitkSetBackground_GGO_C})
 166   target_link_libraries(clitkSetBackground clitkCommon)
 167   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSetBackground)
 168
 169   WRAP_GGO(clitkGammaIndex_GGO_C clitkGammaIndex.ggo)
 170   add_executable(clitkGammaIndex clitkGammaIndex.cxx ${clitkGammaIndex_GGO_C})
 171   target_link_libraries(clitkGammaIndex clitkCommon)
 172   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkGammaIndex)
 173
 174   add_executable(clitkImageArithm clitkImageArithm.cxx)
 175   target_link_libraries(clitkImageArithm clitkImageArithmImageLib clitkCommon )
 176   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageArithm)
 177
 178   add_executable(clitkVectorArithm clitkVectorArithm.cxx)
 179   target_link_libraries(clitkVectorArithm clitkVectorArithmLib clitkCommon )
 180   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVectorArithm)
 181
 182   WRAP_GGO(clitkUnsharpMask_GGO_C clitkUnsharpMask.ggo)
 183   add_executable(clitkUnsharpMask clitkUnsharpMask.cxx ${clitkUnsharpMask_GGO_C})
 184   target_link_libraries(clitkUnsharpMask clitkCommon )
 185   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkUnsharpMask)
 186
 187   WRAP_GGO(clitkMedianImageFilter_GGO_C clitkMedianImageFilter.ggo)
 188   add_executable(clitkMedianImageFilter clitkMedianImageFilter.cxx ${clitkMedianImageFilter_GGO_C})
 189   target_link_libraries(clitkMedianImageFilter clitkMedianImageFilterLib clitkCommon)
 190   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMedianImageFilter)
 191
 192   add_executable(clitkResampleImage clitkResampleImage.cxx)
 193   target_link_libraries(clitkResampleImage clitkResampleImageLib clitkCommon)
 194   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkResampleImage)
 195
 196   WRAP_GGO(clitkMinMaxMask_GGO_C clitkMinMaxMask.ggo)
 197   add_executable(clitkMinMaxMask clitkMinMaxMask.cxx ${clitkMinMaxMask_GGO_C})
 198   target_link_libraries(clitkMinMaxMask clitkCommon  )
 199   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMinMaxMask)
 200
 201   WRAP_GGO(clitkAutoCrop_GGO_C clitkAutoCrop.ggo)
 202   add_executable(clitkAutoCrop clitkAutoCrop.cxx ${clitkAutoCrop_GGO_C})
 203   target_link_libraries(clitkAutoCrop clitkCommon )
 204   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAutoCrop)
 205
 206   WRAP_GGO(clitkDicomRTStruct2Image_GGO_C clitkDicomRTStruct2Image.ggo)
 207   add_executable(clitkDicomRTStruct2Image clitkDicomRTStruct2Image.cxx ${clitkDicomRTStruct2Image_GGO_C})
 208   target_link_libraries(clitkDicomRTStruct2Image clitkDicomRTStruct)
 209   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTStruct2Image)
 210
 211   if(CLITK_USE_SYSTEM_GDCM)
 212     WRAP_GGO(clitkImage2DicomRTStruct_GGO_C clitkImage2DicomRTStruct.ggo)
 213     add_executable(clitkImage2DicomRTStruct clitkImage2DicomRTStruct.cxx ${clitkImage2DicomRTStruct_GGO_C})
 214     target_link_libraries(clitkImage2DicomRTStruct clitkDicomRTStruct)
 215   endif()
 216
 217   WRAP_GGO(clitkComposeVF_GGO_C clitkComposeVF.ggo)
 218   add_executable(clitkComposeVF clitkComposeVFGenericFilter.cxx clitkComposeVF.cxx ${clitkComposeVF_GGO_C})
 219   target_link_libraries(clitkComposeVF clitkCommon  )
 220   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkComposeVF)
 221
 222   WRAP_GGO(clitkMergeSequence_GGO_C clitkMergeSequence.ggo)
 223   add_executable(clitkMergeSequence clitkMergeSequence.cxx clitkMergeSequenceGenericFilter.cxx ${clitkMergeSequence_GGO_C})
 224   target_link_libraries(clitkMergeSequence clitkCommon)
 225   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMergeSequence)
 226
 227   WRAP_GGO(clitkBackProjectImage_GGO_C clitkBackProjectImage.ggo)
 228   add_executable(clitkBackProjectImage clitkBackProjectImage.cxx clitkBackProjectImageGenericFilter.cxx ${clitkBackProjectImage_GGO_C})
 229   target_link_libraries(clitkBackProjectImage clitkCommon)
 230   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBackProjectImage)
 231
 232   add_executable(clitkCropImage clitkCropImage.cxx ${clitkCropImage_GGO_C})
 233   target_link_libraries(clitkCropImage clitkCropImageLib clitkCommon)
 234   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkCropImage)
 235
 236   # WRAP_GGO(clitkExtractSlice_GGO_C clitkExtractSlice.ggo)
 237   # add_executable(clitkExtractSlice clitkExtractSlice.cxx clitkExtractSliceGenericFilter.cxx ${clitkExtractSlice_GGO_C})
 238   # target_link_libraries(clitkExtractSlice clitkCommon)
 239   #set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkExtractSlice)
 240
 241   WRAP_GGO(clitkFlipImage_GGO_C clitkFlipImage.ggo)
 242   add_executable(clitkFlipImage clitkFlipImage.cxx clitkFlipImageGenericFilter.cxx ${clitkFlipImage_GGO_C})
 243   target_link_libraries(clitkFlipImage clitkCommon)
 244   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkFlipImage)
 245
 246   WRAP_GGO(clitkMirrorPadImage_GGO_C clitkMirrorPadImage.ggo)
 247   add_executable(clitkMirrorPadImage clitkMirrorPadImage.cxx clitkMirrorPadImageGenericFilter.cxx ${clitkMirrorPadImage_GGO_C})
 248   target_link_libraries(clitkMirrorPadImage clitkCommon)
 249   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMirrorPadImage)
 250
 251   WRAP_GGO(clitkImageMoment_GGO_C clitkImageMoment.ggo)
 252   add_executable(clitkImageMoment clitkImageMoment.cxx clitkImageMomentGenericFilter.cxx ${clitkImageMoment_GGO_C})
 253   target_link_libraries(clitkImageMoment clitkCommon)
 254   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageMoment)
 255
 256   WRAP_GGO(clitkImageStatistics_GGO_C clitkImageStatistics.ggo)
 257   add_executable(clitkImageStatistics clitkImageStatistics.cxx clitkImageStatisticsGenericFilter.cxx ${clitkImageStatistics_GGO_C})
 258   target_link_libraries(clitkImageStatistics clitkCommon)
 259   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageStatistics)
 260
 261   WRAP_GGO(clitkVFConvert_GGO_C clitkVFConvert.ggo)
 262   add_executable(clitkVFConvert clitkVFConvert.cxx clitkVFConvertGenericFilter.cxx ${clitkVFConvert_GGO_C})
 263   target_link_libraries(clitkVFConvert clitkCommon )
 264   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVFConvert)
 265
 266   WRAP_GGO(clitkImageToVectorImage_GGO_C clitkImageToVectorImage.ggo)
 267   add_executable(clitkImageToVectorImage  clitkImageToVectorImage.cxx clitkImageToVectorImageGenericFilter.cxx ${clitkImageToVectorImage_GGO_C})
 268   target_link_libraries(clitkImageToVectorImage  clitkCommon)
 269   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageToVectorImage)
 270
 271   WRAP_GGO(clitkVectorImageToImage_GGO_C clitkVectorImageToImage.ggo)
 272   add_executable(clitkVectorImageToImage  clitkVectorImageToImage.cxx clitkVectorImageToImageGenericFilter.cxx ${clitkVectorImageToImage_GGO_C})
 273   target_link_libraries(clitkVectorImageToImage  clitkCommon)
 274   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVectorImageToImage)
 275
 276   WRAP_GGO(clitkNVectorImageTo4DImage_GGO_C clitkNVectorImageTo4DImage.ggo)
 277   add_executable(clitkNVectorImageTo4DImage  clitkNVectorImageTo4DImage.cxx clitkNVectorImageTo4DImageGenericFilter.cxx ${clitkNVectorImageTo4DImage_GGO_C})
 278   target_link_libraries(clitkNVectorImageTo4DImage  clitkCommon)
 279   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkNVectorImageTo4DImage)
 280
 281   WRAP_GGO(clitk4DImageToNVectorImage_GGO_C clitk4DImageToNVectorImage.ggo)
 282   add_executable(clitk4DImageToNVectorImage  clitk4DImageToNVectorImage.cxx clitk4DImageToNVectorImageGenericFilter.cxx ${clitk4DImageToNVectorImage_GGO_C})
 283   target_link_libraries(clitk4DImageToNVectorImage  clitkCommon)
 284   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitk4DImageToNVectorImage)
 285
 286   add_executable(clitkMIP clitkMIP.cxx clitkMIPGenericFilter.cxx)
 287   target_link_libraries(clitkMIP clitkMIPLib clitkCommon)
 288   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMIP)
 289
 290   WRAP_GGO(clitkSum_GGO_C clitkSum.ggo)
 291   add_executable(clitkSum clitkSum.cxx ${clitkSum_GGO_C})
 292   target_link_libraries(clitkSum clitkCommon)
 293   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSum)
 294
 295   WRAP_GGO(clitkTransformLandmarks_GGO_C clitkTransformLandmarks.ggo)
 296   add_executable(clitkTransformLandmarks clitkTransformLandmarks.cxx ${clitkTransformLandmarks_GGO_C})
 297   target_link_libraries(clitkTransformLandmarks clitkCommon)
 298   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkTransformLandmarks)
 299
 300   WRAP_GGO(clitkMaskLandmarks_GGO_C clitkMaskLandmarks.ggo)
 301   add_executable(clitkMaskLandmarks clitkMaskLandmarks.cxx ${clitkMaskLandmarks_GGO_C})
 302   target_link_libraries(clitkMaskLandmarks clitkCommon)
 303   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMaskLandmarks)
 304
 305   WRAP_GGO(clitkJacobianImage_GGO_C clitkJacobianImage.ggo)
 306   add_executable(clitkJacobianImage clitkJacobianImage.cxx clitkJacobianImageGenericFilter.cxx ${clitkJacobianImage_GGO_C})
 307   target_link_libraries(clitkJacobianImage clitkCommon)
 308   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkJacobianImage)
 309
 310   WRAP_GGO(clitkPadImage_GGO_C clitkPadImage.ggo)
 311   add_executable(clitkPadImage clitkPadImage.cxx clitkPadImageGenericFilter.cxx ${clitkPadImage_GGO_C})
 312   target_link_libraries(clitkPadImage clitkCommon)
 313   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkPadImage)
 314
 315   WRAP_GGO(clitkCatImage_GGO_C clitkCatImage.ggo)
 316   add_executable(clitkCatImage clitkCatImage.cxx ${clitkCatImage_GGO_C})
 317   target_link_libraries(clitkCatImage clitkCommon)
 318   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkCatImage)
 319
 320   WRAP_GGO(clitkAnisotropicDiffusion_GGO_C clitkAnisotropicDiffusion.ggo)
 321   add_executable(clitkAnisotropicDiffusion clitkAnisotropicDiffusion.cxx
 322     clitkAnisotropicDiffusionGenericFilter.cxx
 323     ${clitkAnisotropicDiffusion_GGO_C})
 324   target_link_libraries(clitkAnisotropicDiffusion clitkCommon)
 325   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAnisotropicDiffusion)
 326
 327   WRAP_GGO(clitkChangeImageInfo_GGO_C clitkChangeImageInfo.ggo)
 328   add_executable(clitkChangeImageInfo clitkChangeImageInfo.cxx
 329     clitkChangeImageInfoGenericFilter.cxx
 330     ${clitkChangeImageInfo_GGO_C})
 331   target_link_libraries(clitkChangeImageInfo clitkCommon)
 332   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkChangeImageInfo)
 333
 334   WRAP_GGO(clitkMergeAsciiDoseActor_GGO_C clitkMergeAsciiDoseActor.ggo)
 335   add_executable(clitkMergeAsciiDoseActor clitkMergeAsciiDoseActor.cxx ${clitkMergeAsciiDoseActor_GGO_C})
 336   target_link_libraries(clitkMergeAsciiDoseActor ITKCommon clitkCommon)
 337   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMergeAsciiDoseActor)
 338
 339   WRAP_GGO(clitkImageUncertainty_GGO_C clitkImageUncertainty.ggo)
 340   add_executable(clitkImageUncertainty clitkImageUncertainty.cxx clitkImageUncertainty_ggo.c)
 341   target_link_libraries(clitkImageUncertainty clitkCommon ${ITK_LIBRARIES})
 342   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageUncertainty)
 343
 344   WRAP_GGO(clitkNormalizeImageFilter_GGO_C clitkNormalizeImageFilter.ggo)
 345   add_executable(clitkNormalizeImageFilter clitkNormalizeImageFilter.cxx ${clitkNormalizeImageFilter_GGO_C})
 346   target_link_libraries(clitkNormalizeImageFilter clitkCommon )
 347   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkNormalizeImageFilter)
 348
 349   WRAP_GGO(clitkImageGradientMagnitude_GGO_C clitkImageGradientMagnitude.ggo)
 350   add_executable(clitkImageGradientMagnitude clitkImageGradientMagnitude.cxx ${clitkImageGradientMagnitude_GGO_C})
 351   target_link_libraries(clitkImageGradientMagnitude clitkCommon )
 352   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageGradientMagnitude)
 353
 354   WRAP_GGO(clitkImageLaplacian_GGO_C clitkImageLaplacian.ggo)
 355   add_executable(clitkImageLaplacian clitkImageLaplacian.cxx ${clitkImageLaplacian_GGO_C})
 356   target_link_libraries(clitkImageLaplacian clitkCommon )
 357   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageLaplacian)
 358
 359   WRAP_GGO(clitkImageIntensityWindowing_GGO_C clitkImageIntensityWindowing.ggo)
 360   add_executable(clitkImageIntensityWindowing clitkImageIntensityWindowing.cxx ${clitkImageIntensityWindowing_GGO_C})
 361   target_link_libraries(clitkImageIntensityWindowing clitkCommon )
 362   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageIntensityWindowing)
 363
 364   WRAP_GGO(clitkMaskOfIntegratedIntensity_GGO_C clitkMaskOfIntegratedIntensity.ggo)
 365   add_executable(clitkMaskOfIntegratedIntensity clitkMaskOfIntegratedIntensity.cxx ${clitkMaskOfIntegratedIntensity_GGO_C})
 366   target_link_libraries(clitkMaskOfIntegratedIntensity clitkCommon )
 367   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMaskOfIntegratedIntensity)
 368
 369
 370   WRAP_GGO(clitkBlurImage_GGO_C clitkBlurImage.ggo)
 371   add_executable(clitkBlurImage clitkBlurImage.cxx ${clitkBlurImage_GGO_C})
 372   target_link_libraries(clitkBlurImage clitkCommon )
 373   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBlurImage)
 374
 375   #=========================================================
 376   option(CLITK_USE_ROOT "Build experimental tools using root" OFF)
 377   if (CLITK_USE_ROOT)
 378     find_package(ROOT REQUIRED)
 379     if(ROOT_FOUND)
 380       message(STATUS "ROOT found : ${ROOT_LIBRARY_DIR} ${ROOT_INCLUDE_DIR} ${ROOT_LIBRARIES}")
 381     else(ROOT_FOUND)
 382       message(FATAL_ERROR
 383         "Cannot build without ROOT.  Please set ROOTSYS environement variable.")
 384     endif(ROOT_FOUND)
 385     include_directories(${ROOT_INCLUDE_DIR})
 386     link_directories(${ROOT_LIBRARY_DIR})
 387     WRAP_GGO(clitkMergeRootFiles_GGO_C clitkMergeRootFiles.ggo)
 388     add_executable(clitkMergeRootFiles clitkMergeRootFiles.cxx GateMergeManager.cc ${clitkMergeRootFiles_GGO_C})
 389     target_link_libraries(clitkMergeRootFiles ${ROOT_LIBRARIES})
 390     set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMergeRootFiles)
 391   endif()
 392   #=========================================================
 393
 394
 395   #=========================================================
 396   if(CLITK_EXPERIMENTAL)
 397     WRAP_GGO(clitkBinaryImageToMesh_GGO_C clitkBinaryImageToMesh.ggo)
 398     add_executable(clitkBinaryImageToMesh clitkBinaryImageToMesh.cxx ${clitkBinaryImageToMesh_GGO_C})
 399     target_link_libraries(clitkBinaryImageToMesh clitkCommon)
 400     set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBinaryImageToMesh)
 401
 402     WRAP_GGO(clitkMeshToBinaryImage_GGO_C clitkMeshToBinaryImage.ggo)
 403     add_executable(clitkMeshToBinaryImage clitkMeshToBinaryImage.cxx ${clitkMeshToBinaryImage_GGO_C})
 404     target_link_libraries(clitkMeshToBinaryImage clitkCommon)
 405     set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMeshToBinaryImage)
 406
 407     WRAP_GGO(clitkMeshViewer_GGO_C clitkMeshViewer.ggo)
 408     add_executable(clitkMeshViewer clitkMeshViewer.cxx ${clitkMeshViewer_GGO_C})
 409     target_link_libraries(clitkMeshViewer clitkCommon)
 410     set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMeshViewer)
 411   endif(CLITK_EXPERIMENTAL)
 412   #=========================================================
 413
 414
 415   #=========================================================
 416   WRAP_GGO(clitkDice_GGO_C clitkDice.ggo)
 417   add_executable(clitkDice clitkDice.cxx ${clitkDice_GGO_C})
 418   target_link_libraries(clitkDice clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES} )
 419   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDice)
 420
 421   WRAP_GGO(clitkDicomRTPlan2Gate_GGO_C clitkDicomRTPlan2Gate.ggo)
 422   add_executable(clitkDicomRTPlan2Gate clitkDicomRTPlan2Gate.cxx clitkDicomRTPlan2Gate_ggo.c)
 423   target_link_libraries(clitkDicomRTPlan2Gate clitkCommon)
 424   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTPlan2Gate)
 425   #=========================================================
 426
 427
 428   install(TARGETS ${TOOLS_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
 429
 430 endif(CLITK_BUILD_TOOLS)