1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://www.centreleonberard.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ===========================================================================**/
19 #include "clitkImageCommon.h"
21 //--------------------------------------------------------------------
22 template<class ArgsInfoType>
23 clitk::AutoCropGenericFilter<ArgsInfoType>::AutoCropGenericFilter():
24 ImageToImageGenericFilter<Self>("AutoCrop")
27 cmdline_parser_clitkAutoCrop_init(&mArgsInfo);
28 //InitializeImageType<2>();
29 InitializeImageType<3>();
30 //InitializeImageType<4>();
32 //--------------------------------------------------------------------
35 //--------------------------------------------------------------------
36 template<class ArgsInfoType>
37 template<unsigned int Dim>
38 void clitk::AutoCropGenericFilter<ArgsInfoType>::InitializeImageType()
40 //ADD_DEFAULT_IMAGE_TYPES(Dim);
41 ADD_IMAGE_TYPE(Dim, uchar);
42 ADD_IMAGE_TYPE(Dim, ushort);
43 ADD_IMAGE_TYPE(Dim, short);
44 // ADD_IMAGE_TYPE(Dim, uint);
45 // ADD_IMAGE_TYPE(Dim, ulong);
46 // ADD_IMAGE_TYPE(Dim, int);
47 // ADD_IMAGE_TYPE(Dim, float);
49 //--------------------------------------------------------------------
52 //--------------------------------------------------------------------
53 template<class ArgsInfoType>
54 void clitk::AutoCropGenericFilter<ArgsInfoType>::SetArgsInfo(const ArgsInfoType & a)
57 this->SetIOVerbose(mArgsInfo.verbose_flag);
58 if (mArgsInfo.imagetypes_flag) this->PrintAvailableImageTypes();
59 if (mArgsInfo.input_given) this->AddInputFilename(mArgsInfo.input_arg);
60 if (mArgsInfo.output_given) this->AddOutputFilename(mArgsInfo.output_arg);
62 //--------------------------------------------------------------------
65 //--------------------------------------------------------------------
66 // Update with the number of dimensions and the pixeltype
67 //--------------------------------------------------------------------
68 template<class ArgsInfoType>
69 template<class ImageType>
70 void clitk::AutoCropGenericFilter<ArgsInfoType>::UpdateWithInputImageType()
73 typename ImageType::Pointer input = this->template GetInput<ImageType>(0);
76 typedef clitk::AutoCropFilter<ImageType> FilterType;
77 typename FilterType::Pointer filter = FilterType::New();
80 filter->SetBackgroundValue(mArgsInfo.BG_arg);
81 filter->SetInput(input);
87 typename ImageType::Pointer output = filter->GetOutput();
88 this->template SetNextOutput<ImageType>(output);
90 //--------------------------------------------------------------------