1 # file clitkDicomRTStruct2BinaryImage.ggo
4 description "Convert DICOM RT Structure Set (contours) to binary image"
6 option "config" - "Config file" string no
7 option "verbose" v "Verbose" flag off
8 option "verboseFile" - "Verbose file content" flag off
9 option "input" i "Input Dicom file" string yes
10 option "image" j "Used to read image info (spacing, origin)" string yes
11 option "output" o "Output image base filename (roi number and extension will be append)" string yes
12 option "tolerance" t "Tolerance for slice position" double no default="0"
14 text "\nOutput options - the default output format is mhd"
15 option "crop" c "Crop binary mask" flag off
16 option "mha" - "Write the RTStruct as a mha image to avoid special character problems" flag off
17 option "nii" - "Write the RTStruct as a nii image" flag off
18 option "niigz" - "Write the RTStruct as a gzipped nii image" flag off
19 option "vtk" - "Write the vtk Mesh as a vtk file" flag off
21 defgroup "ROI option" groupdesc="an option of this group is required"
22 groupoption "roi" r "ROI number to binarize (if -1 = all roi)" int no default="-1" group="ROI option"
23 groupoption "roiName" n "ROI name to binarize (be wary of spaces in ROI names; if blank, use given 'roi' value)" string no default="" group="ROI option"
24 groupoption "roiNameSubstr" s "Substring of ROI name to binarize (returns all matches; if blank, use given 'roiName' value)" string no default="" group="ROI option"