1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://www.centreleonberard.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ===========================================================================**/
18 #ifndef clitkPermuteAxesGenericFilter_txx
19 #define clitkPermuteAxesGenericFilter_txx
21 /* =================================================
22 * @file clitkPermuteAxesGenericFilter.txx
28 ===================================================*/
34 //-------------------------------------------------------------------
35 // Update with the number of dimensions
36 //-------------------------------------------------------------------
37 template<unsigned int Dimension>
39 PermuteAxesGenericFilter::UpdateWithDim(std::string PixelType)
41 if (m_Verbose) std::cout << "Image was detected to be "<<Dimension<<"D and "<< PixelType<<"..."<<std::endl;
43 if(PixelType == "short"){
44 if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and signed short..." << std::endl;
45 UpdateWithDimAndPixelType<Dimension, signed short>();
47 // else if(PixelType == "unsigned_short"){
48 // if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and unsigned_short..." << std::endl;
49 // UpdateWithDimAndPixelType<Dimension, unsigned short>();
52 else if (PixelType == "unsigned_char"){
53 if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and unsigned_char..." << std::endl;
54 UpdateWithDimAndPixelType<Dimension, unsigned char>();
57 // else if (PixelType == "char"){
58 // if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and signed_char..." << std::endl;
59 // UpdateWithDimAndPixelType<Dimension, signed char>();
62 if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and float..." << std::endl;
63 UpdateWithDimAndPixelType<Dimension, float>();
68 //-------------------------------------------------------------------
69 // Update with the number of dimensions and the pixeltype
70 //-------------------------------------------------------------------
71 template <unsigned int Dimension, class PixelType>
73 PermuteAxesGenericFilter::UpdateWithDimAndPixelType()
77 typedef itk::Image<PixelType, Dimension> InputImageType;
78 typedef itk::Image<PixelType, Dimension> OutputImageType;
81 typedef itk::ImageFileReader<InputImageType> InputReaderType;
82 typename InputReaderType::Pointer reader = InputReaderType::New();
83 reader->SetFileName( m_InputFileName);
85 typename InputImageType::Pointer input= reader->GetOutput();
88 typedef itk::PermuteAxesImageFilter<InputImageType> PermuteFilterType;
89 typename PermuteFilterType::Pointer permuteFilter=PermuteFilterType::New();
90 permuteFilter->SetInput(input);
91 typename PermuteFilterType::PermuteOrderArrayType order;
93 if(m_ArgsInfo.order_given != Dimension)
95 std::cerr<<"Error: Number of order parameters is different from image dimension!"<<std::endl;
100 for (unsigned int i=0;i<Dimension; i++)
101 order[i]=m_ArgsInfo.order_arg[i];
103 permuteFilter->SetOrder(order);
104 permuteFilter->Update();
105 typename OutputImageType::Pointer output =permuteFilter->GetOutput();
108 typedef itk::ImageFileWriter<OutputImageType> WriterType;
109 typename WriterType::Pointer writer = WriterType::New();
110 writer->SetFileName(m_ArgsInfo.output_arg);
111 writer->SetInput(output);
119 #endif //#define clitkPermuteAxesGenericFilter_txx