tools/clitkRigidRegistration.cxx

   1 /*-------------------------------------------------------------------------
   2
   3   Program:   clitk
   4   Language:  C++
   5
   6   Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
   7   l'Image). All rights reserved. See Doc/License.txt or
   8   http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details.
   9
  10      This software is distributed WITHOUT ANY WARRANTY; without even
  11      the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  12      PURPOSE.  See the above copyright notices for more information.
  13
  14 -------------------------------------------------------------------------*/
  15
  16 /**
  17  -------------------------------------------------
  18  * @file   clitkRigidRegistration.cxx
  19  * @author Jef Vandemeulebroucke <jef.Vandemeulebroucke@creatis.insa-lyon.fr>
  20  * @date   14 August 2007
  21  *
  22  * @brief Perform a rigid registration between 2 images
  23  *
  24  -------------------------------------------------*/
  25
  26
  27 // clitk include
  28 #include "clitkIO.h"
  29 #include "clitkImageCommon.h"
  30 #include "clitkRigidRegistration_ggo.h"
  31 #include "clitkRigidRegistrationGenericFilter.h"
  32
  33 using namespace clitk;
  34 using namespace std;
  35
  36
  37 int main( int argc, char *argv[] )
  38 {
  39   //init command line and check options
  40   GGO(args_info);
  41   CLITK_INIT;
  42
  43   //---------------------------------------------------------------------------
  44   //Set all the options passed through the commandline
  45
  46   RigidRegistrationGenericFilter rigidRegistration;
  47
  48   rigidRegistration.SetVerbose(args_info.verbose_flag);
  49   rigidRegistration.SetGradient(args_info.gradient_flag);
  50   rigidRegistration.SetZeroOrigin(args_info.zero_origin_flag);
  51
  52  //Input
  53   rigidRegistration.SetFixedImageName(args_info.reference_arg);
  54   rigidRegistration.SetMovingImageName(args_info.object_arg);
  55   rigidRegistration.SetFixedImageMaskGiven(args_info.mask_given);
  56   if (args_info.mask_given)   rigidRegistration.SetFixedImageMaskName(args_info.mask_arg);
  57
  58   //Output
  59   rigidRegistration.SetOutputGiven(args_info.output_given);
  60   if (args_info.output_given)  rigidRegistration.SetOutputName(args_info.output_arg);
  61   rigidRegistration.SetCheckerAfterGiven(args_info.checker_after_given);
  62   if (args_info.checker_after_given)  rigidRegistration.SetCheckerAfterName(args_info.checker_after_arg);
  63   rigidRegistration.SetCheckerBeforeGiven(args_info.checker_before_given);
  64   if (args_info.checker_before_given)  rigidRegistration.SetCheckerBeforeName(args_info.checker_before_arg);
  65   rigidRegistration.SetBeforeGiven(args_info.before_given);
  66   if (args_info.before_given)  rigidRegistration.SetBeforeName(args_info.before_arg);
  67   rigidRegistration.SetAfterGiven(args_info.after_given);
  68   if (args_info.after_given)  rigidRegistration.SetAfterName(args_info.after_arg);
  69   rigidRegistration.SetMatrixGiven(args_info.matrix_given);
  70   if (args_info.matrix_given)  rigidRegistration.SetMatrixName(args_info.matrix_arg);
  71
  72   //Interp
  73   rigidRegistration.SetInterpType(args_info.interp_arg);
  74
  75   //Transform
  76   rigidRegistration.SetRotX(args_info.rotX_arg);
  77   rigidRegistration.SetRotY(args_info.rotY_arg);
  78   rigidRegistration.SetRotZ(args_info.rotZ_arg);
  79   rigidRegistration.SetTransX(args_info.transX_arg);
  80   rigidRegistration.SetTransY(args_info.transY_arg);
  81   rigidRegistration.SetTransZ(args_info.transZ_arg);
  82
  83   //Optimizer
  84   rigidRegistration.SetLevels(args_info.levels_arg);
  85   rigidRegistration.SetIstep(args_info.Istep_arg);
  86   rigidRegistration.SetFstep(args_info.Fstep_arg);
  87   rigidRegistration.SetRelax(args_info.relax_arg);
  88   rigidRegistration.SetInc(args_info.inc_arg);
  89   rigidRegistration.SetDec(args_info.dec_arg);
  90   rigidRegistration.SetIter(args_info.iter_arg);
  91   rigidRegistration.SetRweight(args_info.Rweight_arg);
  92   rigidRegistration.SetTweight(args_info.Tweight_arg);
  93
  94   //Metric
  95   rigidRegistration.SetMetricType(args_info.metric_arg);
  96   rigidRegistration.SetSamples(args_info.samples_arg);
  97   rigidRegistration.SetBins(args_info.bins_arg);
  98   rigidRegistration.SetRandom(args_info.random_flag);
  99   rigidRegistration.SetStdDev(args_info.stdDev_arg);
 100
 101   //Preprocessing
 102   rigidRegistration.SetBlur(args_info.blur_arg);
 103   rigidRegistration.SetNormalize(args_info.normalize_flag);
 104
 105   rigidRegistration.Update();
 106
 107 }