tools/clitkUpdateVRTagDicomGenericFilter.h

   1 /*=========================================================================
   2   Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
   3
   4   Authors belong to:
   5   - University of LYON              http://www.universite-lyon.fr/
   6   - Léon Bérard cancer center       http://www.centreleonberard.fr
   7   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
   8
   9   This software is distributed WITHOUT ANY WARRANTY; without even
  10   the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  11   PURPOSE.  See the copyright notices for more information.
  12
  13   It is distributed under dual licence
  14
  15   - BSD        See included LICENSE.txt file
  16   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  17 ===========================================================================**/
  18 #ifndef clitkUpdateVRTagDicomGenericFilter_h
  19 #define clitkUpdateVRTagDicomGenericFilter_h
  20
  21 /* =================================================
  22  * @file   clitkUpdateVRTagDicomGenericFilter.h
  23  * @author
  24  * @date
  25  *
  26  * @brief
  27  *
  28  ===================================================*/
  29
  30
  31 // clitk include
  32 #include "clitkIO.h"
  33 #include "clitkImageCommon.h"
  34 #include "clitkUpdateVRTagDicom_ggo.h"
  35
  36 //itk include
  37 #include "itkLightObject.h"
  38 #include "itkGDCMImageIO.h"
  39 #include "itkMetaDataDictionary.h"
  40 #include "itkGDCMSeriesFileNames.h"
  41 #include "itkImageSeriesReader.h"
  42 #include "itkImageSeriesWriter.h"
  43 #include "itkImageFileReader.h"
  44 #include "itkImageFileWriter.h"
  45 #include <vector>
  46 #include <itksys/SystemTools.hxx>
  47 enum valrep_t {VR_AE,
  48                                 VR_AS,
  49                                 VR_AT,
  50                                 VR_CS,
  51                                 VR_DA,
  52                                 VR_DS,
  53                                 VR_DT,
  54                                 VR_FL,
  55                                 VR_FD,
  56                                 VR_IS,
  57                                 VR_LO,
  58                                 VR_LT,
  59                                 VR_OB,
  60                                 VR_OF,
  61                                 VR_OW,
  62                                 VR_PN,
  63                                 VR_SH,
  64                                 VR_SL,
  65                                 VR_SQ,
  66                                 VR_SS,
  67                                 VR_ST,
  68                                 VR_TM,
  69                                 VR_UI,
  70                                 VR_UL,
  71                                 VR_UN,
  72                                 VR_US,
  73                                 VR_UT};
  74 namespace clitk
  75 {
  76   template<class args_info_type>
  77   class ITK_EXPORT UpdateVRTagDicomGenericFilter : public itk::LightObject
  78   {
  79   public:
  80     //----------------------------------------
  81     // ITK
  82     //----------------------------------------
  83     typedef UpdateVRTagDicomGenericFilter   Self;
  84     typedef itk::LightObject                          Superclass;
  85     typedef itk::SmartPointer<Self>                   Pointer;
  86     typedef itk::SmartPointer<const Self>             ConstPointer;
  87
  88     // Method for creation through the object factory
  89     itkNewMacro(Self);
  90
  91     // Run-time type information (and related methods)
  92     itkTypeMacro( UpdateVRTagDicomGenericFilter, LightObject );
  93
  94
  95     //----------------------------------------
  96     // Typedefs
  97     //----------------------------------------
  98
  99
 100     //----------------------------------------
 101     // Set & Get
 102     //----------------------------------------
 103     void SetArgsInfo(const args_info_type & a)
 104     {
 105       m_ArgsInfo=a;
 106       m_Verbose=m_ArgsInfo.verbose_flag;
 107       m_InputFileName=m_ArgsInfo.input_arg;
 108     }
 109
 110
 111     //----------------------------------------
 112     // Update
 113     //----------------------------------------
 114     void Update();
 115
 116   protected:
 117
 118     //----------------------------------------
 119     // Constructor & Destructor
 120     //----------------------------------------
 121     UpdateVRTagDicomGenericFilter();
 122     ~UpdateVRTagDicomGenericFilter() {};
 123
 124
 125     //----------------------------------------
 126     // Templated members
 127     //----------------------------------------
 128     template <unsigned int Dimension>  void UpdateWithDim(std::string PixelType);
 129     template <unsigned int Dimension, class PixelType> void UpdateWithDimAndPixelType();
 130     template <unsigned int Dimension, class PixelType> void ReadDataElement(std::ifstream& f, std::ifstream& model);
 131     template <unsigned int Dimension, class PixelType> void ReadDicomObject(std::ifstream& f, std::ifstream& model);
 132     template <unsigned int Dimension, class PixelType> void InitVRMap();
 133     template <unsigned int Dimension, class PixelType> void UpdateVRMap();
 134
 135
 136     //----------------------------------------
 137     // Data members
 138     //----------------------------------------
 139     args_info_type m_ArgsInfo;
 140     bool m_Verbose;
 141     std::string m_InputFileName;
 142     int counter;
 143     uint16_t Group;
 144     uint16_t Element;
 145     std::string VR;
 146     uint32_t Length;
 147     uint32_t LengthModel;
 148     char* Value;
 149     char* ValueModel;
 150     std::map<std::string, valrep_t> VRMap;
 151     std::map<std::string, std::string> VRMapModel;
 152
 153     std::ofstream output;
 154     std::ifstream f;
 155     std::ifstream model;
 156
 157     unsigned long size;
 158     unsigned long endSQ;
 159
 160   };
 161
 162 //Copy dicom dictionary
 163 void CopyDictionary (itk::MetaDataDictionary &fromDict, itk::MetaDataDictionary &toDict);
 164
 165 //convert to std::string
 166 template <typename T> std::string NumberToString ( T Number );
 167 template <typename T> std::string int_to_hex ( T Number );
 168 std::string string_to_hex( std::string &input );
 169
 170 } // end namespace clitk
 171
 172 #ifndef ITK_MANUAL_INSTANTIATION
 173 #include "clitkUpdateVRTagDicomGenericFilter.txx"
 174 #endif
 175
 176 #endif // #define clitkUpdateVRTagDicomGenericFilter_h