1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ======================================================================-====*/
20 #include <QMessageBox>
21 #include <QInputDialog>
23 #include "QTreePushButton.h"
26 #include "vvMainWindow.h"
27 #include "vvHelpDialog.h"
28 #include "vvDocumentation.h"
29 #include "vvProgressDialog.h"
30 #include "vvQDicomSeriesSelector.h"
31 #include "vvSlicerManager.h"
32 #include "clitkImageCommon.h"
34 #include "vvInteractorStyleNavigator.h"
35 #include "vvImageWriter.h"
36 #include "vvResamplerDialog.h"
37 #include "vvSegmentationDialog.h"
38 #include "vvSurfaceViewerDialog.h"
39 #include "vvDeformationDialog.h"
40 #include "vvImageWarp.h"
42 #include "vvMaximumIntensityProjection.h"
43 #include "vvMidPosition.h"
45 #include "vvStructSelector.h"
46 #include "vvMeshReader.h"
47 #include "vvConstants.h"
49 #ifdef CLITK_VV_USE_BDCM
50 #include <bdcmDicomFilesSelectorDialog.h>
55 #include "itkImageFileReader.h"
56 #include "itkByteSwapper.h"
57 #include "itkCommand.h"
58 #include "itkNumericSeriesFileNames.h"
61 #include "vtkImageData.h"
62 #include "vtkImageActor.h"
63 #include "vtkCornerAnnotation.h"
64 #include "vtkRenderWindow.h"
65 #include "vtkRenderWindowInteractor.h"
66 #include "vtkRenderer.h"
67 #include "vtkRendererCollection.h"
68 #include "vtkWindowToImageFilter.h"
69 #include "vtkBMPWriter.h"
70 #include "vtkTIFFWriter.h"
71 #include "vtkPNMWriter.h"
72 #include "vtkPNGWriter.h"
73 #include "vtkJPEGWriter.h"
79 #define COLUMN_UL_VIEW 1
80 #define COLUMN_UR_VIEW 2
81 #define COLUMN_DL_VIEW 3
82 #define COLUMN_DR_VIEW 4
83 #define COLUMN_CLOSE_IMAGE 5
84 #define COLUMN_RELOAD_IMAGE 6
85 #define COLUMN_IMAGE_NAME 7
87 #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.hdr *.vox *.his *.xdr)"
90 0,Qt::UserRole full filename
91 1,Qt::CheckStateRole checkbutton UL View
92 1,Qt::UserRole overlay, fusion or vector
93 2,Qt::CheckStateRole checkbutton UR View
94 3,Qt::CheckStateRole checkbutton DL View
95 4,Qt::CheckStateRole checkbutton DR View
97 5,Qt::UserRole mSlicerManager id*/
99 //------------------------------------------------------------------------------
100 vvMainWindow::vvMainWindow():vvMainWindowBase() {
101 setupUi(this); // this sets up the GUI
104 mMenuTools = menuTools;
105 mContextMenu = &contextMenu;
106 mMenuExperimentalTools = menuExperimental;
109 //Init the contextMenu
110 this->setContextMenuPolicy(Qt::CustomContextMenu);
111 contextActions.resize(0);
112 QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
113 tr("O&pen new Image"));
114 actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
115 connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
116 contextActions.push_back(actionOpen_new_image);
117 contextMenu.addSeparator();
119 QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
120 tr("Close Current Image"));
121 connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
122 contextActions.push_back(actionClose_Image);
124 QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
125 tr("Reload Current Image"));
126 connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
127 contextActions.push_back(actionReload_image);
129 QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
130 tr("Save Current Image"));
131 connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
132 contextActions.push_back(actionSave_image);
134 contextMenu.addSeparator();
136 // QAction* actionCrop_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/crop.png")),
137 // tr("Crop Current Image"));
138 // connect(actionCrop_image,SIGNAL(triggered()),this,SLOT(CropImage()));
139 // contextActions.push_back(actionCrop_image);
141 QAction* actionSplit_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/cut.png")),
142 tr("Split Current Image"));
143 connect(actionSplit_image,SIGNAL(triggered()),this,SLOT(SplitImage()));
144 contextActions.push_back(actionSplit_image);
146 contextMenu.addSeparator();
148 contextMenu.addAction(actionAdd_VF_to_current_Image);
149 contextActions.push_back(actionAdd_VF_to_current_Image);
151 QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
152 tr("Add overlay image to current image"));
153 contextMenu.addAction(actionAdd_Overlay_to_current_Image);
154 contextActions.push_back(actionAdd_Overlay_to_current_Image);
156 connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
158 contextMenu.addAction(actionAdd_fusion_image);
159 connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
160 contextActions.push_back(actionAdd_fusion_image);
164 QMenu * m = new QMenu(menubar);
166 // m->setObjectName(QString::fromUtf8("TOTOTO"));
167 contextMenu.addMenu(m);
168 QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
170 QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
174 connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
178 mSlicerManagers.resize(0);
188 header.append("Name");
190 DataTree->setHeaderLabels(header);
191 DataTree->resizeColumnToContents(COLUMN_TREE);
192 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
193 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
194 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
195 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
196 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
197 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
198 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
201 documentation = new vvDocumentation();
202 help_dialog = new vvHelpDialog();
203 dicomSeriesSelector = new vvDicomSeriesSelector();
205 inverseButton->setEnabled(0);
206 actionAdd_Overlay_to_current_Image->setEnabled(0);
207 actionSave_As->setEnabled(0);
208 actionAdd_VF_to_current_Image->setEnabled(0);
209 actionAdd_fusion_image->setEnabled(0);
212 verticalSliders.push_back(NOVerticalSlider);
213 verticalSliders.push_back(NEVerticalSlider);
214 verticalSliders.push_back(SOVerticalSlider);
215 verticalSliders.push_back(SEVerticalSlider);
217 for (int i =0; i < 4; i++)
218 verticalSliders[i]->hide();
220 horizontalSliders.push_back(NOHorizontalSlider);
221 horizontalSliders.push_back(NEHorizontalSlider);
222 horizontalSliders.push_back(SOHorizontalSlider);
223 horizontalSliders.push_back(SEHorizontalSlider);
225 for (int i =0; i < 4; i++)
226 horizontalSliders[i]->hide();
229 connect(NOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOVerticalSliderChanged()));
230 connect(NEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEVerticalSliderChanged()));
231 connect(SOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOVerticalSliderChanged()));
232 connect(SEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEVerticalSliderChanged()));
234 connect(NOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOHorizontalSliderMoved()));
235 connect(NEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEHorizontalSliderMoved()));
236 connect(SOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOHorizontalSliderMoved()));
237 connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved()));
240 connect(actionMaximum_Intensity_Projection,SIGNAL(triggered()),this,SLOT(ComputeMIP()));
241 connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition()));
242 connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration()));
243 connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
244 connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
245 connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
246 connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
247 connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
248 connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
249 connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
250 connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
251 connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
252 connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
253 connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
254 connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
255 connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
257 ///////////////////////////////////////////////
258 contextMenu.addAction(actionResampler);
259 connect(actionResampler,SIGNAL(triggered()),this,SLOT(ResampleCurrentImage()));
260 connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
261 connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
262 ///////////////////////////////////////////////
264 actionNorth_East_Window->setEnabled(0);
265 actionNorth_West_Window->setEnabled(0);
266 actionSouth_East_Window->setEnabled(0);
267 actionSouth_West_Window->setEnabled(0);
269 connect(actionNorth_East_Window,SIGNAL(triggered()),this,SLOT(SaveNEScreenshot()));
270 connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
271 connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
272 connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
274 connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
275 connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
276 SLOT(DisplayChanged(QTreeWidgetItem*, int)));
278 connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
279 connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
280 connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
281 connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
282 connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
283 connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
286 connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
288 connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
289 connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
290 connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int)),this,SLOT(SetVFProperty(int,int,int)));
291 connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int)),this,SLOT(SetOverlayProperty(int)));
292 connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,double,double)),
293 this,SLOT(SetFusionProperty(int,int,double,double)));
294 connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
298 playButton->setEnabled(0);
299 frameRateLabel->setEnabled(0);
300 frameRateSpinBox->setEnabled(0);
301 connect(playButton, SIGNAL(clicked()),this,SLOT(PlayPause()));
302 connect(frameRateSpinBox, SIGNAL(valueChanged(int)),this,SLOT(ChangeFrameRate(int)));
304 goToCursorPushButton->setEnabled(0);
305 connect(goToCursorPushButton, SIGNAL(clicked()),this,SLOT(GoToCursor()));
307 NOViewWidget->hide();
308 NEViewWidget->hide();
309 SOViewWidget->hide();
310 SEViewWidget->hide();
312 //Recently opened files
313 std::list<std::string> recent_files = GetRecentlyOpenedImages();
314 if ( !recent_files.empty() )
316 QMenu * rmenu = new QMenu("Recently opened files...");
317 rmenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
318 menuFile->insertMenu(actionOpen_Image_With_Time,rmenu);
319 for (std::list<std::string>::iterator i = recent_files.begin();i!=recent_files.end();i++)
321 QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")),
323 rmenu->addAction(current);
324 connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage()));
328 // Adding all new tools (insertion in the menu)
329 vvToolManager::GetInstance()->InsertToolsInMenu(this);
331 if (!CLITK_EXPERIMENTAL)
332 menuExperimental->menuAction()->setVisible(false);
334 //------------------------------------------------------------------------------
337 //------------------------------------------------------------------------------
338 void vvMainWindow::ComputeMIP()
340 vvMaximumIntensityProjection mip;
341 vvSlicerManager* selected_slicer = mSlicerManagers[GetSlicerIndexFromItem(DataTree->selectedItems()[0])];
342 QFileInfo info(selected_slicer->GetFileName().c_str());
343 mip.Compute(selected_slicer);
344 AddImage(mip.GetOutput(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_mip.mhd");
346 //------------------------------------------------------------------------------
349 //------------------------------------------------------------------------------
350 void vvMainWindow::ComputeMidPosition()
353 int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
354 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
355 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
359 midp.slicer_manager = mSlicerManagers[index];
360 midp.reference_image_index = ref;
361 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
364 QMessageBox::warning(this, "Error computing midposition image",midp.error_message.c_str());
367 QFileInfo info(midp.slicer_manager->GetFileName().c_str());
368 AddImage(midp.output,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_midposition.mhd");
370 QApplication::restoreOverrideCursor();
373 //------------------------------------------------------------------------------
376 //------------------------------------------------------------------------------
377 void vvMainWindow::AddContour(int image_index, vvMesh::Pointer contour, bool propagation)
379 QTreeWidgetItem *item = new QTreeWidgetItem();
380 item->setData(0,Qt::UserRole,"filename.vtk");
381 item->setData(1,Qt::UserRole,tr("contour"));
383 brush.setColor(QColor(contour->r*255,contour->g*255,contour->b*255));
384 brush.setStyle(Qt::SolidPattern);
385 item->setData(COLUMN_IMAGE_NAME,Qt::BackgroundRole,brush);
386 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
388 for (int j = 1; j <= 4; j++)
389 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(image_index)->data(j,Qt::CheckStateRole));
391 QTreePushButton* cButton = new QTreePushButton;
392 cButton->setItem(item);
393 cButton->setColumn(COLUMN_CLOSE_IMAGE);
394 cButton->setToolTip(tr("close image"));
395 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
396 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
397 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
399 QTreePushButton* rButton = new QTreePushButton;
400 rButton->setItem(item);
401 rButton->setColumn(COLUMN_RELOAD_IMAGE);
402 rButton->setToolTip(tr("reload image"));
403 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
404 rButton->setEnabled(false);
406 //connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
407 //this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
409 DataTree->topLevelItem(image_index)->setExpanded(1);
410 DataTree->topLevelItem(image_index)->addChild(item);
411 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
412 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
413 QString id = DataTree->topLevelItem(image_index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
414 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
417 mSlicerManagers[image_index]->AddContour(contour,propagation);
418 mSlicerManagers[image_index]->Render();
420 //------------------------------------------------------------------------------
423 //------------------------------------------------------------------------------
424 void vvMainWindow::OpenVTKContour()
426 if (mSlicerManagers.size() > 0)
428 QString Extensions = "Images ( *.vtk; *.obj)";
429 Extensions += ";;All Files (*)";
430 QString file = QFileDialog::getOpenFileName(this,tr("Open vtkPolyData"),mInputPathName,Extensions);
433 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
434 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
436 reader.SetImage(mSlicerManagers[index]->GetImage());
437 reader.SetModeToVTK();
438 reader.SetFilename(file.toStdString());
440 AddContour(index,reader.GetOutput()[0],false);
441 QApplication::restoreOverrideCursor();
444 //------------------------------------------------------------------------------
447 //------------------------------------------------------------------------------
448 void vvMainWindow::OpenDCStructContour()
450 if (mSlicerManagers.size() > 0)
452 QString Extensions = "Dicom Files ( *.dcm; RS*)";
453 Extensions += ";;All Files (*)";
454 QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
457 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
459 reader.SetFilename(file.toStdString());
460 vvStructSelector selector;
461 selector.SetStructures(reader.GetROINames());
462 if (!mSlicerManagers[index]->GetVF().IsNull())
463 selector.EnablePropagationCheckBox();
466 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
467 reader.SetSelectedItems(selector.getSelectedItems());
468 reader.SetImage(mSlicerManagers[index]->GetImage());
469 if (selector.PropagationEnabled())
470 reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
472 std::vector<vvMesh::Pointer> contours=reader.GetOutput();
473 for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
474 i!=contours.end();i++)
475 AddContour(index,*i,selector.PropagationEnabled());
476 QApplication::restoreOverrideCursor();
480 //------------------------------------------------------------------------------
483 //------------------------------------------------------------------------------
484 void vvMainWindow::ComputeDeformableRegistration()
486 if (mSlicerManagers.size() > 0)
488 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
489 vvDeformationDialog dialog(index,mSlicerManagers);
492 std::string base_name=itksys::SystemTools::GetFilenameWithoutExtension(mSlicerManagers[dialog.GetInputFileIndex()]->GetFileName());
493 AddField(dialog.GetOutput(),dialog.getFieldFile(),dialog.GetInputFileIndex());
494 WarpImage(dialog.GetSelectedSlicer(),dialog.GetReferenceFrameIndex());
497 std::cout << "Error or user cancellation while computing deformation field..." << std::endl;
499 else QMessageBox::information(this, "Need to open image","You must open an image first.");
501 //------------------------------------------------------------------------------
504 //------------------------------------------------------------------------------
505 void vvMainWindow::WarpImage()
507 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
508 if (!mSlicerManagers[index]->GetVF().IsNull())
511 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
512 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
515 WarpImage(mSlicerManagers[index],ref);
519 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field"));
521 //------------------------------------------------------------------------------
524 //------------------------------------------------------------------------------
525 void vvMainWindow::WarpImage(vvSlicerManager* selected_slicer,int reference_phase)
527 if (!selected_slicer->GetVF().IsNull())
529 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
530 QFileInfo info(selected_slicer->GetFileName().c_str());
531 vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
532 reference_phase,this);
533 if (warp.ComputeWarpedImage())
535 AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
536 AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
537 AddImage(warp.GetJacobianImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_jacobian.mhd");
538 QApplication::restoreOverrideCursor();
542 QApplication::restoreOverrideCursor();
543 QMessageBox::warning(this,tr("Different spacings"),tr("The vector field and image spacings must be the same in order to warp."));
547 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field."));
549 //------------------------------------------------------------------------------
552 //------------------------------------------------------------------------------
553 vvMainWindow::~vvMainWindow() {
554 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
556 if (mSlicerManagers[i] != NULL)
557 delete mSlicerManagers[i];
560 //------------------------------------------------------------------------------
563 //------------------------------------------------------------------------------
564 void vvMainWindow::MergeImages() {
565 QString Extensions = EXTENSIONS;
566 Extensions += ";;All Files (*)";
567 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images"),mInputPathName,Extensions);
570 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
571 std::vector<std::string> vector;
573 unsigned int currentDim = 0;
574 std::vector<double> currentSpacing;
575 std::vector<int> currentSize;
576 std::vector<double> currentOrigin;
578 for (int i = 0; i < files.size(); i++)
580 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
581 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
582 reader->SetFileName(files[i].toStdString().c_str());
583 reader->ReadImageInformation();
585 //NOViewWidget->hide();
586 //NEViewWidget->hide();
587 //SOViewWidget->hide();
588 //SEViewWidget->hide();
590 currentDim = reader->GetNumberOfDimensions();
592 for (unsigned int j = 0;j < currentDim; j++)
598 currentSpacing.resize(currentDim);
599 currentSize.resize(currentDim);
600 currentOrigin.resize(currentDim);
602 currentOrigin[j] = reader->GetOrigin(j);
603 currentSpacing[j] = reader->GetSpacing(j);
604 currentSize[j] = reader->GetDimensions(j);
606 else if (currentDim != reader->GetNumberOfDimensions()
607 || currentSpacing[j] != reader->GetSpacing(j)
608 || currentSize[j] != (int)reader->GetDimensions(j)
609 || currentOrigin[j] != reader->GetOrigin(j))
611 QString error = "Cannot read file (too different from others ";
612 error += files[i].toStdString().c_str();
613 QMessageBox::information(this,tr("Reading problem"),error);
619 vector.push_back(files[i].toStdString());
622 if (vector.size() > 0)
623 LoadImages(vector, MERGED);
625 //------------------------------------------------------------------------------
628 //------------------------------------------------------------------------------
629 void vvMainWindow::MergeImagesWithTime() {
630 QString Extensions = EXTENSIONS;
631 Extensions += ";;All Files (*)";
632 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images With Time"),mInputPathName,Extensions);
635 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
636 std::vector<std::string> vector;
638 unsigned int currentDim = 0;
639 std::vector<double> currentSpacing;
640 std::vector<int> currentSize;
641 std::vector<double> currentOrigin;
643 for (int i = 0; i < files.size(); i++)
645 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
646 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
649 reader->SetFileName(files[i].toStdString().c_str());
650 reader->ReadImageInformation();
652 currentDim = reader->GetNumberOfDimensions();
654 for (unsigned int j = 0;j < currentDim; j++)
660 currentSpacing.resize(currentDim);
661 currentSize.resize(currentDim);
662 currentOrigin.resize(currentDim);
664 currentOrigin[j] = reader->GetOrigin(j);
665 currentSpacing[j] = reader->GetSpacing(j);
666 currentSize[j] = reader->GetDimensions(j);
668 else if (currentDim != reader->GetNumberOfDimensions()
669 || currentSpacing[j] != reader->GetSpacing(j)
670 || currentSize[j] != (int)reader->GetDimensions(j)
671 || currentOrigin[j] != reader->GetOrigin(j))
673 QString error = "Cannot read file (too different from others ";
674 error += files[i].toStdString().c_str();
675 QMessageBox::information(this,tr("Reading problem"),error);
681 vector.push_back(files[i].toStdString());
685 QString error = "Cannot read file info for ";
686 error += files[i].toStdString().c_str();
688 error += "Maybe you're trying to open an image in an unsupported format?\n";
689 QMessageBox::information(this,tr("Reading problem"),error);
692 sort(vector.begin(),vector.end());
693 if (vector.size() > 1)
694 LoadImages(vector, MERGEDWITHTIME);
696 QMessageBox::warning(this,tr("Reading problem"),"You need to select at least two images to merge images with time.\nIf you only want to open one image, please use the \"Open Image\" function.");
698 //------------------------------------------------------------------------------
701 //------------------------------------------------------------------------------
702 void vvMainWindow::OpenDicom() {
703 std::vector<std::string> files;
705 #ifdef CLITK_VV_USE_BDCM
706 bool r = bdcm::OpenDicomFilesSelectorDialog(files,
707 "DicomFilesSelectorDialog test",
711 std::cout << "$$$$ main : user clicked 'OK' $$$$"<<std::endl;
712 std::cout << "$$$$ selected files : "<<std::endl;
713 std::vector<std::string>::iterator i;
714 for (i=files.begin();i!=files.end();++i) {
715 std::cout << *i << std::endl;
717 std::cout << "$$$$ "<<std::endl;
719 LoadImages(files,DICOM);
722 std::cout << "$$$$ main : user clicked 'CANCEL' $$$$"<<std::endl;
725 std::cout << "dicomSeriesSelector " << std::endl;
726 if (dicomSeriesSelector->exec() == QDialog::Accepted) {
727 files = *(dicomSeriesSelector->GetFilenames());
728 LoadImages(files,DICOM);
733 //------------------------------------------------------------------------------
735 //------------------------------------------------------------------------------
736 void vvMainWindow::OpenImages() {
737 QString Extensions = EXTENSIONS;
738 Extensions += ";;All Files (*)";
740 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images"),mInputPathName,Extensions);
743 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
744 std::vector<std::string> vector;
745 for (int i = 0; i < files.size(); i++)
746 vector.push_back(files[i].toStdString());
747 LoadImages(vector, IMAGE);
749 //------------------------------------------------------------------------------
750 void vvMainWindow::OpenRecentImage()
752 QAction * caller = qobject_cast<QAction*>(sender());
753 std::vector<std::string> images;
754 images.push_back(caller->text().toStdString());
755 mInputPathName = itksys::SystemTools::GetFilenamePath(images[0]).c_str();
756 LoadImages(images,IMAGE);
759 //------------------------------------------------------------------------------
760 void vvMainWindow::OpenImageWithTime() {
761 QString Extensions = EXTENSIONS;
762 Extensions += ";;All Files (*)";
764 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images With Time"),mInputPathName,Extensions);
767 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
768 std::vector<std::string> vector;
769 for (int i = 0; i < files.size(); i++)
771 vector.push_back(files[i].toStdString());
773 LoadImages(vector, IMAGEWITHTIME);
775 //------------------------------------------------------------------------------
777 //------------------------------------------------------------------------------
778 void vvMainWindow::LoadImages(std::vector<std::string> files, LoadedImageType filetype) {
779 //Separate the way to open images and dicoms
781 if (filetype == IMAGE || filetype == IMAGEWITHTIME)
782 fileSize = files.size();
786 //Only add to the list of recently opened files when a single file is opened,
787 //to avoid polluting the list of recently opened files
788 if (files.size() == 1)
790 QFileInfo finfo=tr(files[0].c_str());
791 AddToRecentlyOpenedImages(finfo.absoluteFilePath().toStdString());
793 //init the progress events
794 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
795 vvProgressDialog progress("Opening " + files[0],fileSize>1);
796 qApp->processEvents();
798 int numberofsuccesulreads=0;
799 //open images as 1 or multiples
800 for (int i = 0; i < fileSize; i++) {
802 progress.Update("Opening " + files[i]);
803 progress.SetProgress(i,fileSize);
804 qApp->processEvents();
806 //read the image and put it in mSlicerManagers
807 vvSlicerManager* imageManager = new vvSlicerManager(4);
808 qApp->processEvents();
810 bool SetImageSucceed=false;
812 if (filetype == IMAGE || filetype == IMAGEWITHTIME)
813 SetImageSucceed = imageManager->SetImage(files[i],filetype);
816 SetImageSucceed = imageManager->SetImages(files,filetype);
818 if (SetImageSucceed == false)
820 QApplication::restoreOverrideCursor();
821 QString error = "Cannot open file \n";
822 error += imageManager->GetLastError().c_str();
823 QMessageBox::information(this,tr("Reading problem"),error);
828 mSlicerManagers.push_back(imageManager);
830 //create an item in the tree with good settings
831 QTreeWidgetItem *item = new QTreeWidgetItem();
832 item->setData(0,Qt::UserRole,files[i].c_str());
833 QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
834 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
835 qApp->processEvents();
837 //Create the buttons for reload and close
838 qApp->processEvents();
839 QTreePushButton* cButton = new QTreePushButton;
840 cButton->setItem(item);
841 cButton->setColumn(COLUMN_CLOSE_IMAGE);
842 cButton->setToolTip(tr("close image"));
843 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
844 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
845 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
847 QTreePushButton* rButton = new QTreePushButton;
848 rButton->setItem(item);
849 rButton->setColumn(COLUMN_RELOAD_IMAGE);
850 rButton->setToolTip(tr("reload image"));
851 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
852 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
853 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
855 DataTree->addTopLevelItem(item);
856 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
857 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
859 //set the id of the image
860 QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
861 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
862 mSlicerManagers.back()->SetId(id.toStdString());
864 linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
866 connect(mSlicerManagers.back(),SIGNAL(currentImageChanged(std::string)),
867 this,SLOT(CurrentImageChanged(std::string)));
868 connect(mSlicerManagers.back(),SIGNAL(
869 UpdatePosition(int, double, double, double, double, double, double, double)),this,
870 SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
871 connect(mSlicerManagers.back(),SIGNAL(UpdateVector(int, double, double, double, double)),
872 this, SLOT(VectorChanged(int,double,double,double, double)));
873 connect(mSlicerManagers.back(),SIGNAL(UpdateOverlay(int, double, double)),
874 this, SLOT(OverlayChanged(int,double,double)));
875 connect(mSlicerManagers.back(),SIGNAL(UpdateFusion(int, double)),
876 this, SLOT(FusionChanged(int,double)));
877 connect(mSlicerManagers.back(),SIGNAL(UpdateWindows(int, int, int)),
878 this,SLOT(WindowsChanged(int, int, int)));
879 connect(mSlicerManagers.back(),SIGNAL(WindowLevelChanged(double, double,int, int)),
880 this,SLOT(WindowLevelChanged(double, double, int, int)));
881 connect(mSlicerManagers.back(),SIGNAL(UpdateSlice(int,int)),
882 this,SLOT(UpdateSlice(int,int)));
883 connect(mSlicerManagers.back(),SIGNAL(UpdateTSlice(int, int)),
884 this,SLOT(UpdateTSlice(int, int)));
885 connect(mSlicerManagers.back(),SIGNAL(UpdateSliceRange(int,int,int,int,int)),
886 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
887 connect(mSlicerManagers.back(),SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
888 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
889 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
891 numberofsuccesulreads++;
894 if (numberofsuccesulreads)
896 NOViewWidget->show();
897 NEViewWidget->show();
898 SOViewWidget->show();
899 SEViewWidget->show();
904 QApplication::restoreOverrideCursor();
907 //------------------------------------------------------------------------------
909 //------------------------------------------------------------------------------
910 void vvMainWindow::UpdateTree() {
911 DataTree->resizeColumnToContents(COLUMN_TREE);
912 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
913 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
914 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
915 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
916 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
917 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
918 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
920 //------------------------------------------------------------------------------
922 //------------------------------------------------------------------------------
923 void vvMainWindow::CurrentImageChanged(std::string id) {
925 for (int i = 0; i < DataTree->topLevelItemCount(); i++)
927 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id)
933 DataTree->topLevelItem(i)->setSelected(0);
935 for (int child = 0; child < DataTree->topLevelItem(i)->childCount();child++)
936 DataTree->topLevelItem(i)->child(child)->setSelected(0);
939 DataTree->topLevelItem(selected)->setSelected(1);
941 //------------------------------------------------------------------------------
943 //------------------------------------------------------------------------------
944 void vvMainWindow::ImageInfoChanged() {
945 contextActions[7]->setEnabled(1);
946 contextActions[6]->setEnabled(1);
947 actionSave_As->setEnabled(1);
948 actionAdd_VF_to_current_Image->setEnabled(1);
949 actionAdd_fusion_image->setEnabled(1);
950 actionNorth_East_Window->setEnabled(1);
951 actionNorth_West_Window->setEnabled(1);
952 actionSouth_East_Window->setEnabled(1);
953 actionSouth_West_Window->setEnabled(1);
954 inverseButton->setEnabled(1);
956 goToCursorPushButton->setEnabled(1);
958 if (DataTree->selectedItems().size()) {
959 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
961 colorMapComboBox->setEnabled(1);
962 for (int i = 0; i < DataTree->topLevelItem(index)->childCount();i++)
964 if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
965 DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion")
967 colorMapComboBox->setEnabled(0);
972 std::vector<double> origin;
973 std::vector<double> inputSpacing;
974 std::vector<int> inputSize;
975 std::vector<double> sizeMM;
978 QString inputSizeInBytes;
979 QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
981 if (mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size() > 1 || playMode == 1)
983 playButton->setEnabled(1);
984 frameRateLabel->setEnabled(1);
985 frameRateSpinBox->setEnabled(1);
989 playButton->setEnabled(0);
990 frameRateLabel->setEnabled(0);
991 frameRateSpinBox->setEnabled(0);
997 if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0])
999 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1000 dimension = imageSelected->GetNumberOfDimensions();
1001 origin.resize(dimension);
1002 inputSpacing.resize(dimension);
1003 inputSize.resize(dimension);
1004 sizeMM.resize(dimension);
1005 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
1006 for (int i = 0;i < dimension;i++)
1008 origin[i] = imageSelected->GetOrigin()[i];
1009 inputSpacing[i] = imageSelected->GetSpacing()[i];
1010 inputSize[i] = imageSelected->GetSize()[i];
1011 sizeMM[i] = inputSize[i]*inputSpacing[i];
1012 NPixel *= inputSize[i];
1014 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1016 else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector")
1018 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
1019 dimension = imageSelected->GetNumberOfDimensions();
1020 origin.resize(dimension);
1021 inputSpacing.resize(dimension);
1022 inputSize.resize(dimension);
1023 sizeMM.resize(dimension);
1024 pixelType = mSlicerManagers[index]->GetVF()->GetScalarTypeAsString().c_str();
1025 for (int i = 0;i < dimension;i++)
1027 origin[i] = imageSelected->GetOrigin()[i];
1028 inputSpacing[i] = imageSelected->GetSpacing()[i];
1029 inputSize[i] = imageSelected->GetSize()[i];
1030 sizeMM[i] = inputSize[i]*inputSpacing[i];
1031 NPixel *= inputSize[i];
1033 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1035 else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay")
1037 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
1038 dimension = imageSelected->GetNumberOfDimensions();
1039 origin.resize(dimension);
1040 inputSpacing.resize(dimension);
1041 inputSize.resize(dimension);
1042 sizeMM.resize(dimension);
1043 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
1044 for (int i = 0;i < dimension;i++)
1046 origin[i] = imageSelected->GetOrigin()[i];
1047 inputSpacing[i] = imageSelected->GetSpacing()[i];
1048 inputSize[i] = imageSelected->GetSize()[i];
1049 sizeMM[i] = inputSize[i]*inputSpacing[i];
1050 NPixel *= inputSize[i];
1052 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1054 else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion")
1056 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
1057 dimension = imageSelected->GetNumberOfDimensions();
1058 origin.resize(dimension);
1059 inputSpacing.resize(dimension);
1060 inputSize.resize(dimension);
1061 sizeMM.resize(dimension);
1062 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
1063 for (int i = 0;i < dimension;i++)
1065 origin[i] = imageSelected->GetOrigin()[i];
1066 inputSpacing[i] = imageSelected->GetSpacing()[i];
1067 inputSize[i] = imageSelected->GetSize()[i];
1068 sizeMM[i] = inputSize[i]*inputSpacing[i];
1069 NPixel *= inputSize[i];
1071 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1074 QString dim = QString::number(dimension) + " (";
1075 dim += pixelType + ")";
1077 infoPanel->setFileName(image);
1078 infoPanel->setDimension(dim);
1079 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1080 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1081 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1082 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1083 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1085 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1086 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1087 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1088 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1090 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1091 for (int i = 0; i < 4;i++)
1093 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3)
1095 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1099 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1100 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1101 // DD(mSlicerManagers[index]->GetColorMap());
1102 // DD(mSlicerManagers[index]->GetPreset());
1103 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1104 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1106 infoPanel->setFileName(image);
1107 infoPanel->setDimension(dim);
1108 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1109 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1110 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1111 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1112 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1114 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1115 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1116 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1117 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1119 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1120 for (int i = 0; i < 4;i++)
1122 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3)
1124 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1128 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1129 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1130 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1131 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1133 if (mSlicerManagers[index]->GetSlicer(0)->GetVF())
1135 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1136 overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
1137 mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
1138 mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
1142 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1143 overlayPanel->getVFProperty(-1,-1,-1);
1145 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay())
1147 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1148 overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor());
1152 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1153 overlayPanel->getOverlayProperty(-1);
1155 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion())
1157 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1158 overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
1159 mSlicerManagers[index]->GetFusionColorMap(),
1160 mSlicerManagers[index]->GetFusionWindow(),
1161 mSlicerManagers[index]->GetFusionLevel());
1165 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1166 overlayPanel->getFusionProperty(-1, -1,-1,-1);
1170 //------------------------------------------------------------------------------
1172 //------------------------------------------------------------------------------
1173 void vvMainWindow::ShowDocumentation() {
1174 documentation->show();
1176 //------------------------------------------------------------------------------
1177 void vvMainWindow::ShowHelpDialog() {
1178 help_dialog->show();
1180 //------------------------------------------------------------------------------
1182 //------------------------------------------------------------------------------
1183 void vvMainWindow::ChangeViewMode() {
1184 QListIterator<int> it0(splitter_3->sizes());
1185 QListIterator<int> it1(splitter_3->sizes());
1188 while (it0.hasNext())
1192 while (it1.hasNext())
1201 size0.push_back(max0);
1203 size1.push_back(max1);
1205 splitter_3->setSizes(size0);
1206 OSplitter->setSizes(size1);
1207 DataTree->setColumnHidden(2,1);
1208 DataTree->setColumnHidden(3,1);
1209 DataTree->setColumnHidden(4,1);
1214 size0.push_back(int(max0/2));
1215 size0.push_back(int(max0/2));
1216 size1.push_back(int(max1/2));
1217 size1.push_back(int(max1/2));
1218 splitter_3->setSizes(size0);
1219 OSplitter->setSizes(size1);
1220 DataTree->setColumnHidden(2,0);
1221 DataTree->setColumnHidden(3,0);
1222 DataTree->setColumnHidden(4,0);
1225 //------------------------------------------------------------------------------
1227 //------------------------------------------------------------------------------
1228 QString vvMainWindow::GetSizeInBytes(unsigned long size) {
1229 QString result = "";// QString::number(size);
1230 //result += " bytes (";
1231 if (size > 1000000000)
1234 result += QString::number(size);
1235 result += "Gb";//)";
1237 else if (size > 1000000)
1240 result += QString::number(size);
1241 result += "Mb";//)";
1243 else if (size > 1000)
1246 result += QString::number(size);
1247 result += "kb";//)";
1251 //------------------------------------------------------------------------------
1253 //------------------------------------------------------------------------------
1254 QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble) {
1256 for (unsigned int i= 0; i < vectorDouble.size(); i++)
1260 result += QString::number(vectorDouble[i]);
1264 //------------------------------------------------------------------------------
1266 //------------------------------------------------------------------------------
1267 QString vvMainWindow::GetVectorIntAsString(std::vector<int> vectorInt) {
1269 for (unsigned int i= 0; i < vectorInt.size(); i++)
1273 result += QString::number(vectorInt[i]);
1277 //------------------------------------------------------------------------------
1279 //------------------------------------------------------------------------------
1280 int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item) {
1281 QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1282 for (int i = 0; i < DataTree->topLevelItemCount(); i++)
1284 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1289 //------------------------------------------------------------------------------
1291 //------------------------------------------------------------------------------
1292 void vvMainWindow::DisplayChanged(QTreeWidgetItem *clicked_item, int column) {
1293 int index = GetSlicerIndexFromItem(clicked_item);
1294 if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
1296 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
1298 QTreeWidgetItem* current_row=DataTree->topLevelItem(i);
1299 if (DataTree->topLevelItem(index) == current_row)
1301 vvSlicer* clicked_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1302 if (current_row == clicked_item)
1304 //If we just activated a slicer
1305 if (current_row->data(column,Qt::CheckStateRole).toInt() > 0)
1307 mSlicerManagers[i]->UpdateSlicer(column-1,clicked_item->data(column,Qt::CheckStateRole).toInt());
1308 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1309 DisplaySliders(i,column-1);
1310 std::map<std::string,int> overlay_counts;
1311 for (int child = 0; child < current_row->childCount(); child++)
1313 std::string overlay_type =
1314 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1315 overlay_counts[overlay_type]++;
1316 current_row->child(child)->setData(column,Qt::CheckStateRole,
1317 current_row->data(column,Qt::CheckStateRole));
1318 clicked_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,true);
1321 else //We don't allow simply desactivating a slicer
1323 clicked_item->setData(column,Qt::CheckStateRole,2);
1327 //if we clicked on the vector(or overlay) and not the image
1330 if (clicked_item->data(column,Qt::CheckStateRole).toInt())
1332 current_row->setData(column,Qt::CheckStateRole,2);
1333 mSlicerManagers[i]->UpdateSlicer(column-1,2);
1334 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1335 DisplaySliders(i,column-1);
1337 int vis = clicked_item->data(column,Qt::CheckStateRole).toInt();
1338 std::string overlay_type = clicked_item->data(1,Qt::UserRole).toString().toStdString();
1339 int overlay_index=0;
1340 for (int child = 0; child < current_row->childCount(); child++)
1342 if (current_row->child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1344 if (current_row->child(child) == clicked_item) break;
1346 clicked_slicer->SetActorVisibility(
1347 clicked_item->data(1,Qt::UserRole).toString().toStdString(), overlay_index-1,vis);
1350 else if (current_row->data(column,Qt::CheckStateRole).toInt() > 0)
1352 current_row->setData(column,Qt::CheckStateRole,0);
1353 mSlicerManagers[i]->UpdateSlicer(column-1,0);
1354 std::map<std::string,int> overlay_counts;
1355 for (int child = 0; child < current_row->childCount(); child++)
1357 std::string overlay_type =
1358 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1359 overlay_counts[overlay_type]++;
1360 current_row->child(child)->setData(column,Qt::CheckStateRole,0);
1361 vvSlicer * current_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1362 current_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,false);
1365 //mSlicerManagers[i]->SetColorMap(-1);
1366 mSlicerManagers[i]->SetColorMap();
1368 mSlicerManagers[index]->GetSlicer(column-1)->Render();
1370 //------------------------------------------------------------------------------
1372 void vvMainWindow::InitSlicers()
1374 if (mSlicerManagers.size())
1376 mSlicerManagers.back()->GenerateDefaultLookupTable();
1378 mSlicerManagers.back()->SetSlicerWindow(0,NOViewWidget->GetRenderWindow());
1379 mSlicerManagers.back()->SetSlicerWindow(1,NEViewWidget->GetRenderWindow());
1380 mSlicerManagers.back()->SetSlicerWindow(2,SOViewWidget->GetRenderWindow());
1381 mSlicerManagers.back()->SetSlicerWindow(3,SEViewWidget->GetRenderWindow());
1385 //------------------------------------------------------------------------------
1386 void vvMainWindow::InitDisplay() {
1387 if (mSlicerManagers.size())
1389 //BE CAREFUL : this is absolutely necessary to set the interactor style
1390 //in order to have the same style instanciation for all SlicerManagers in
1392 for (int j = 0; j < 4; j++)
1394 vvInteractorStyleNavigator* style = vvInteractorStyleNavigator::New();
1395 style->SetAutoAdjustCameraClippingRange(1);
1396 bool AlreadySelected = false;
1397 for (int i = 0; i < DataTree->topLevelItemCount(); i++)
1399 mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
1401 //select the image only if previous are not selected
1402 if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1)
1404 mSlicerManagers[i]->UpdateSlicer(j,1);
1405 AlreadySelected = true;
1407 else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected)
1409 if (DataTree->selectedItems().size() == 0)
1410 DataTree->topLevelItem(i)->setSelected(1);
1411 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
1412 mSlicerManagers[i]->UpdateSlicer(j,1);
1413 DisplaySliders(i,j);
1417 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,0);
1418 mSlicerManagers[i]->UpdateSlicer(j,0);
1425 //------------------------------------------------------------------------------
1427 //------------------------------------------------------------------------------
1428 void vvMainWindow::DisplaySliders(int slicer, int window) {
1430 mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
1431 int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
1435 tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
1436 int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetTSlice();
1437 bool showHorizontal = false;
1438 bool showVertical = false;
1439 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1440 || (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 2
1441 && mSlicerManagers[slicer]->GetType() != IMAGEWITHTIME
1442 && mSlicerManagers[slicer]->GetType() != MERGEDWITHTIME))
1443 showVertical = true;
1444 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1445 || mSlicerManagers[slicer]->GetType() == IMAGEWITHTIME
1446 || mSlicerManagers[slicer]->GetType() == MERGEDWITHTIME)
1447 showHorizontal = true;
1450 verticalSliders[window]->show();
1452 verticalSliders[window]->hide();
1453 verticalSliders[window]->setRange(range[0],range[1]);
1454 verticalSliders[window]->setValue(position);
1457 horizontalSliders[window]->show();
1459 horizontalSliders[window]->hide();
1460 horizontalSliders[window]->setRange(tRange[0],tRange[1]);
1461 horizontalSliders[window]->setValue(tPosition);
1463 //------------------------------------------------------------------------------
1465 //------------------------------------------------------------------------------
1466 void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column) {
1467 int index = GetSlicerIndexFromItem(item);
1469 if (DataTree->topLevelItem(index) != item)
1471 QString warning = "Do you really want to close the overlay : ";
1472 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1473 QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
1475 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1476 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1477 if (msgBox.exec() == QMessageBox::AcceptRole)
1479 std::string overlay_type=item->data(1,Qt::UserRole).toString().toStdString();
1480 int overlay_index=0;
1481 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1483 if (DataTree->topLevelItem(index)->\
1484 child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1486 if (DataTree->topLevelItem(index)->child(child) == item) break;
1488 mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
1489 mSlicerManagers[index]->SetColorMap(0);
1490 DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
1491 mSlicerManagers[index]->Render();
1494 else if (DataTree->topLevelItemCount() <= 1)
1496 QString warning = "Do you really want to close the image : ";
1497 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1498 warning += "\nThis is the last image, you're about to close vv !!!";
1499 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1501 msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
1502 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1503 if (msgBox.exec() == QMessageBox::AcceptRole)
1510 QString warning = "Do you really want to close the image : ";
1511 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1512 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1514 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1515 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1516 if (msgBox.exec() == QMessageBox::AcceptRole)
1519 // Tell tools that we close an image
1520 emit AnImageIsBeingClosed(mSlicerManagers[index]);
1522 std::vector<vvSlicerManager*>::iterator Manageriter = mSlicerManagers.begin();
1523 DataTree->takeTopLevelItem(index);
1524 for (int i = 0; i < index; i++)
1528 linkPanel->removeImage(index);
1529 mSlicerManagers[index]->RemoveActors();
1530 delete mSlicerManagers[index];
1531 mSlicerManagers.erase(Manageriter);
1538 //------------------------------------------------------------------------------
1540 //------------------------------------------------------------------------------
1541 void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column) {
1542 // int index = GetSlicerIndexFromItem(item);
1543 // QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1544 // if (item->data(1,Qt::UserRole).toString() == "vector")
1545 // mSlicerManagers[index]->ReloadVF();
1547 // mSlicerManagers[index]->Reload();
1549 // QApplication::restoreOverrideCursor();
1550 int index = GetSlicerIndexFromItem(item);
1551 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1552 QString role=item->data(1,Qt::UserRole).toString();
1553 if ( role == "vector")
1554 mSlicerManagers[index]->ReloadVF();
1555 else if (role == "overlay")
1556 mSlicerManagers[index]->ReloadOverlay();
1557 else if (role == "fusion")
1558 mSlicerManagers[index]->ReloadFusion();
1560 mSlicerManagers[index]->Reload();
1561 QApplication::restoreOverrideCursor();
1563 //------------------------------------------------------------------------------
1565 // void vvMainWindow::CropImage()
1567 // int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1568 // vvCropDialog crop(mSlicerManagers,index);
1570 // AddImage(crop.GetOutput(),"cropped.mhd");
1573 //------------------------------------------------------------------------------
1574 void vvMainWindow::SplitImage() {
1575 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1576 int dim = mSlicerManagers[index]->GetDimension();
1577 QString warning = "Do you really want to split the ";
1578 warning += QString::number(dim) + "D image ";
1579 warning += DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString() + " into ";
1580 warning += QString::number(mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetSize()[dim-1]) + " ";
1581 warning += QString::number(dim-1) + "D images.";
1582 QMessageBox msgBox(QMessageBox::Warning, tr("Split Image"),
1584 msgBox.addButton(tr("Split"), QMessageBox::AcceptRole);
1585 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1586 if (msgBox.exec() == QMessageBox::AcceptRole)
1588 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1591 std::string filename = DataTree->selectedItems()[0]->data(0,Qt::UserRole).toString().toStdString();
1592 int numberOfSlice = mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetSize()[dim-1];
1593 std::string path = itksys::SystemTools::GetFilenamePath(
1596 path += DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString().toStdString();
1598 path += itksys::SystemTools::GetFilenameLastExtension(
1601 typedef itk::NumericSeriesFileNames NameGeneratorType;
1602 NameGeneratorType::Pointer nameGenerator = NameGeneratorType::New();
1603 nameGenerator->SetSeriesFormat(path.c_str());
1604 nameGenerator->SetStartIndex(0);
1605 nameGenerator->SetEndIndex(numberOfSlice-1);
1606 nameGenerator->SetIncrementIndex(1);
1608 for (int i = 0; i < numberOfSlice; i++)
1610 vvSlicerManager* imageManager = new vvSlicerManager(4);
1611 imageManager->SetExtractedImage(nameGenerator->GetFileNames()[i],
1612 mSlicerManagers[index]->GetSlicer(0)->GetImage(), i);
1613 mSlicerManagers.push_back(imageManager);
1615 //create an item in the tree with good settings
1616 QTreeWidgetItem *item = new QTreeWidgetItem();
1617 item->setData(0,Qt::UserRole,nameGenerator->GetFileNames()[i].c_str());
1618 std::string fileI = itksys::SystemTools::GetFilenameWithoutLastExtension(
1619 nameGenerator->GetFileNames()[i]).c_str();
1620 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileI.c_str());
1621 for (int j = 1; j <= 4; j++)
1623 for (int i = 0; i < DataTree->topLevelItemCount(); i++)
1625 DataTree->topLevelItem(i)->setData(j,Qt::CheckStateRole,0);
1627 item->setData(j,Qt::CheckStateRole,2);
1630 //Create the buttons for reload and close
1631 QTreePushButton* cButton = new QTreePushButton;
1632 cButton->setItem(item);
1633 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1634 cButton->setToolTip(tr("close image"));
1635 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1636 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1637 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1639 QTreePushButton* rButton = new QTreePushButton;
1640 rButton->setItem(item);
1641 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1642 rButton->setToolTip(tr("reload image"));
1643 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1644 rButton->setEnabled(false);
1645 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1646 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1648 DataTree->addTopLevelItem(item);
1649 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1650 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1652 //set the id of the image
1653 QString id = nameGenerator->GetFileNames()[i].c_str() + QString::number(mSlicerManagers.size()-1);
1654 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1655 mSlicerManagers.back()->SetId(id.toStdString());
1656 linkPanel->addImage(fileI, id.toStdString());
1657 connect(mSlicerManagers.back(),SIGNAL(currentImageChanged(std::string)),
1658 this,SLOT(CurrentImageChanged(std::string)));
1659 connect(mSlicerManagers.back(),SIGNAL(
1660 UpdatePosition(int, double, double, double, double, double, double, double)),this,
1661 SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
1662 connect(mSlicerManagers.back(),SIGNAL(UpdateVector(int, double, double, double, double)),
1663 this, SLOT(VectorChanged(int,double,double,double, double)));
1664 connect(mSlicerManagers.back(),SIGNAL(UpdateOverlay(int, double, double)),
1665 this, SLOT(OverlayChanged(int,double,double)));
1666 connect(mSlicerManagers.back(),SIGNAL(UpdateFusion(int, double)),
1667 this, SLOT(FusionChanged(int,double)));
1668 connect(mSlicerManagers.back(),SIGNAL(UpdateWindows(int, int, int)),
1669 this,SLOT(WindowsChanged(int, int, int)));
1670 connect(mSlicerManagers.back(),SIGNAL(WindowLevelChanged(double, double,int, int)),
1671 this,SLOT(WindowLevelChanged(double, double, int, int)));
1672 connect(mSlicerManagers.back(),SIGNAL(UpdateSlice(int,int)),
1673 this,SLOT(UpdateSlice(int,int)));
1674 connect(mSlicerManagers.back(),SIGNAL(UpdateTSlice(int, int)),
1675 this,SLOT(UpdateTSlice(int, int)));
1676 connect(mSlicerManagers.back(),SIGNAL(UpdateSliceRange(int,int,int,int,int)),
1677 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
1678 connect(mSlicerManagers.back(),SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
1679 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
1680 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
1682 qApp->processEvents();
1685 qApp->processEvents();
1687 QApplication::restoreOverrideCursor();
1691 QApplication::restoreOverrideCursor();
1692 QString error = "Cannot split file (dimensions must be greater than 2) ";
1693 QMessageBox::information(this,tr("Splitting problem"),error);
1697 //------------------------------------------------------------------------------
1699 //------------------------------------------------------------------------------
1700 void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value) {
1701 infoPanel->setCurrentInfo(visibility,x,y,z,X,Y,Z,value);
1703 //------------------------------------------------------------------------------
1705 //------------------------------------------------------------------------------
1706 void vvMainWindow::VectorChanged(int visibility,double x, double y, double z, double value) {
1707 overlayPanel->getCurrentVectorInfo(visibility,x,y,z,value);
1709 //------------------------------------------------------------------------------
1711 //------------------------------------------------------------------------------
1712 void vvMainWindow::OverlayChanged(int visibility, double valueOver, double valueRef) {
1713 overlayPanel->getCurrentOverlayInfo(visibility,valueOver, valueRef);
1715 //------------------------------------------------------------------------------
1717 //------------------------------------------------------------------------------
1718 void vvMainWindow::FusionChanged(int visibility, double value) {
1719 overlayPanel->getCurrentFusionInfo(visibility,value);
1721 //------------------------------------------------------------------------------
1723 //------------------------------------------------------------------------------
1724 void vvMainWindow::WindowsChanged(int window, int view, int slice) {
1725 infoPanel->setViews(window, view, slice);
1727 //------------------------------------------------------------------------------
1729 //------------------------------------------------------------------------------
1730 void vvMainWindow::WindowLevelChanged(double window, double level,int preset,int colormap) {
1731 windowSpinBox->setValue(window);
1732 levelSpinBox->setValue(level);
1733 colorMapComboBox->setCurrentIndex(colormap);
1734 presetComboBox->setCurrentIndex(preset);
1736 //------------------------------------------------------------------------------
1738 //------------------------------------------------------------------------------
1739 void vvMainWindow::WindowLevelEdited() {
1740 presetComboBox->setCurrentIndex(6);
1741 UpdateWindowLevel();
1743 //------------------------------------------------------------------------------
1745 //------------------------------------------------------------------------------
1746 void vvMainWindow::UpdateWindowLevel() {
1747 if (DataTree->selectedItems().size())
1749 if (presetComboBox->currentIndex() == 7) //For ventilation
1750 colorMapComboBox->setCurrentIndex(5);
1751 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1752 mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
1753 mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
1754 mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
1755 mSlicerManagers[index]->Render();
1758 //------------------------------------------------------------------------------
1760 //------------------------------------------------------------------------------
1761 void vvMainWindow::UpdateColorMap() {
1762 if (DataTree->selectedItems().size())
1764 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1765 mSlicerManagers[index]->SetColorMap(colorMapComboBox->currentIndex());
1766 mSlicerManagers[index]->Render();
1769 //------------------------------------------------------------------------------
1770 void vvMainWindow::SwitchWindowLevel() {
1771 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1772 int window = mSlicerManagers[index]->GetColorWindow();
1773 presetComboBox->setCurrentIndex(6);
1774 windowSpinBox->setValue(-window);
1775 UpdateWindowLevel();
1777 //------------------------------------------------------------------------------
1779 //------------------------------------------------------------------------------
1780 void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps) {
1781 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
1783 if (mSlicerManagers[i]->GetId() == id)
1785 //mSlicerManagers[i]->SetTSlice(temps);
1786 mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
1787 mSlicerManagers[i]->UpdateViews(0,slicer);
1792 //------------------------------------------------------------------------------
1794 //------------------------------------------------------------------------------
1795 void vvMainWindow::ShowContextMenu(QPoint point) {
1796 if (!DataTree->selectedItems().size())
1798 contextActions[1]->setEnabled(0);
1799 contextActions[2]->setEnabled(0);
1800 contextActions[3]->setEnabled(0);
1801 contextActions[4]->setEnabled(0);
1802 contextActions[5]->setEnabled(0);
1803 contextActions[6]->setEnabled(0);
1804 contextActions[7]->setEnabled(0);
1808 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1809 contextActions[1]->setEnabled(1);
1810 contextActions[2]->setEnabled(
1811 DataTree->itemWidget(DataTree->selectedItems()[0],
1812 COLUMN_RELOAD_IMAGE)->isEnabled());
1813 contextActions[3]->setEnabled(1);
1814 contextActions[5]->setEnabled(1);
1815 contextActions[6]->setEnabled(1);
1816 contextActions[7]->setEnabled(1);
1818 if (mSlicerManagers[index]->GetDimension() < 3)
1819 contextActions[4]->setEnabled(0);
1821 contextActions[4]->setEnabled(1);
1823 contextMenu.exec(QCursor::pos());
1825 //------------------------------------------------------------------------------
1827 //------------------------------------------------------------------------------
1828 void vvMainWindow::CloseImage() {
1829 CloseImage(DataTree->selectedItems()[0],0);
1831 //------------------------------------------------------------------------------
1833 //------------------------------------------------------------------------------
1834 void vvMainWindow::ReloadImage() {
1835 ReloadImage(DataTree->selectedItems()[0],0);
1837 //------------------------------------------------------------------------------
1839 //------------------------------------------------------------------------------
1840 void vvMainWindow::SelectOverlayImage() {
1841 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1843 //check if one overlay image is added
1844 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1845 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay")
1847 QString error = "Cannot add more than one compared image\n";
1848 error += "Please remove first ";
1849 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1850 QMessageBox::information(this,tr("Problem adding compared image !"),error);
1854 QString Extensions = EXTENSIONS;
1855 Extensions += ";;All Files (*)";
1856 QString file = QFileDialog::getOpenFileName(this,tr("Load Overlay image"),mInputPathName,Extensions);
1857 if (!file.isEmpty())
1858 AddOverlayImage(index,file);
1860 //------------------------------------------------------------------------------
1862 //------------------------------------------------------------------------------
1863 void vvMainWindow::AddOverlayImage(int index, QString file) {
1864 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1865 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1866 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1867 reader->SetFileName(file.toStdString().c_str());
1868 reader->ReadImageInformation();
1869 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1870 int dimension = reader->GetNumberOfDimensions();
1871 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1872 vvProgressDialog progress("Opening " + file.toStdString());
1873 qApp->processEvents();
1875 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1876 if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component))
1878 //create an item in the tree with good settings
1879 QTreeWidgetItem *item = new QTreeWidgetItem();
1880 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1881 item->setData(1,Qt::UserRole,tr("overlay"));
1882 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
1883 qApp->processEvents();
1885 for (int j = 1; j <= 4; j++)
1887 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1888 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("overlay",0,
1889 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1892 //Create the buttons for reload and close
1893 qApp->processEvents();
1894 QTreePushButton* cButton = new QTreePushButton;
1895 cButton->setItem(item);
1896 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1897 cButton->setToolTip(tr("close image"));
1898 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1899 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1900 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1902 QTreePushButton* rButton = new QTreePushButton;
1903 rButton->setItem(item);
1904 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1905 rButton->setToolTip(tr("reload image"));
1906 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1907 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1908 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1910 DataTree->topLevelItem(index)->setExpanded(1);
1911 DataTree->topLevelItem(index)->addChild(item);
1912 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1913 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1915 //set the id of the image
1916 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1917 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1919 qApp->processEvents();
1921 QApplication::restoreOverrideCursor();
1925 QApplication::restoreOverrideCursor();
1926 QString error = "Cannot import the new image.\n";
1927 error += mSlicerManagers[index]->GetLastError().c_str();
1928 QMessageBox::information(this,tr("Problem reading image !"),error);
1932 void vvMainWindow::AddFusionImage()
1934 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1936 //check if one fusion image is added
1937 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1938 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion")
1940 QString error = "Cannot add more than one fusion image\n";
1941 error += "Please remove first ";
1942 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1943 QMessageBox::information(this,tr("Problem adding fusion image !"),error);
1947 QString Extensions = EXTENSIONS;
1948 Extensions += ";;All Files (*)";
1949 QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
1950 if (!file.isEmpty())
1952 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1953 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1954 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1955 reader->SetFileName(file.toStdString().c_str());
1956 reader->ReadImageInformation();
1957 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1960 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1961 vvProgressDialog progress("Opening fusion");
1962 qApp->processEvents();
1964 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1965 if (mSlicerManagers[index]->SetFusion(file.toStdString(),
1966 reader->GetNumberOfDimensions(), component))
1968 //create an item in the tree with good settings
1969 QTreeWidgetItem *item = new QTreeWidgetItem();
1970 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1971 item->setData(1,Qt::UserRole,tr("fusion"));
1972 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
1973 qApp->processEvents();
1975 for (int j = 1; j <= 4; j++)
1977 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1978 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0,
1979 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1982 //Create the buttons for reload and close
1983 qApp->processEvents();
1984 QTreePushButton* cButton = new QTreePushButton;
1985 cButton->setItem(item);
1986 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1987 cButton->setToolTip(tr("close image"));
1988 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1989 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1990 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1992 QTreePushButton* rButton = new QTreePushButton;
1993 rButton->setItem(item);
1994 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1995 rButton->setToolTip(tr("reload image"));
1996 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1997 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1998 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2000 DataTree->topLevelItem(index)->setExpanded(1);
2001 DataTree->topLevelItem(index)->addChild(item);
2002 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2003 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2005 //set the id of the image
2006 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2007 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2009 qApp->processEvents();
2011 QApplication::restoreOverrideCursor();
2015 QApplication::restoreOverrideCursor();
2016 QString error = "Cannot import the new image.\n";
2017 error += mSlicerManagers[index]->GetLastError().c_str();
2018 QMessageBox::information(this,tr("Problem reading image !"),error);
2023 QString error = "Cannot import the new image.\n";
2024 QMessageBox::information(this,tr("Problem reading image !"),error);
2030 void vvMainWindow::OpenField()
2032 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2033 //check if a vector field has already been added
2034 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
2035 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector")
2037 QString error = "Cannot add more than one vector field\n";
2038 error += "Please remove first ";
2039 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
2040 QMessageBox::information(this,tr("Problem adding vector field!"),error);
2044 QString Extensions = "Images ( *.mhd)";
2045 Extensions += ";;Images ( *.vf)";
2046 QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
2047 if (!file.isEmpty())
2048 AddField(file,index);
2051 void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
2053 //create an item in the tree with good settings
2054 QTreeWidgetItem *item = new QTreeWidgetItem();
2055 item->setData(0,Qt::UserRole,filename.toStdString().c_str());
2056 item->setData(1,Qt::UserRole,tr("vector"));
2057 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename);
2058 qApp->processEvents();
2060 for (int j = 1; j <= 4; j++)
2062 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2063 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("vector",0,
2064 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
2067 //Create the buttons for reload and close
2068 qApp->processEvents();
2069 QTreePushButton* cButton = new QTreePushButton;
2070 cButton->setItem(item);
2071 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2072 cButton->setToolTip(tr("close vector field"));
2073 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2074 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2075 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2077 QTreePushButton* rButton = new QTreePushButton;
2078 rButton->setItem(item);
2079 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2080 rButton->setToolTip(tr("reload vector field"));
2081 rButton->setEnabled(from_disk);
2082 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2083 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2084 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2086 DataTree->topLevelItem(index)->setExpanded(1);
2087 DataTree->topLevelItem(index)->addChild(item);
2088 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2089 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2091 //set the id of the image
2092 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2093 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2095 qApp->processEvents();
2097 QApplication::restoreOverrideCursor();
2100 void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
2102 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2103 vvSlicerManager* imageManager = mSlicerManagers[index];
2104 if (imageManager->SetVF(vf,file.toStdString()))
2106 AddFieldEntry(file,index,false);
2110 QString error = "Cannot import the vector field for this image.\n";
2111 error += imageManager->GetLastError().c_str();
2112 QMessageBox::information(this,tr("Problem reading VF !"),error);
2114 QApplication::restoreOverrideCursor();
2117 void vvMainWindow::AddField(QString file,int index)
2119 if (QFile::exists(file))
2121 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2123 //init the progress events
2124 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2125 vvProgressDialog progress("Opening " + file.toStdString());
2126 qApp->processEvents();
2128 //read the vector and put it in the current mSlicerManager
2129 vvSlicerManager* imageManager = mSlicerManagers[index];
2130 qApp->processEvents();
2132 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2133 if (imageManager->SetVF(file.toStdString()))
2135 imageManager->Render();
2136 AddFieldEntry(file,index,true);
2140 QApplication::restoreOverrideCursor();
2141 QString error = "Cannot import the vector field for this image.\n";
2142 error += imageManager->GetLastError().c_str();
2143 QMessageBox::information(this,tr("Problem reading VF !"),error);
2147 QMessageBox::information(this,tr("Problem reading VF !"),"File doesn't exist!");
2150 //------------------------------------------------------------------------------
2152 //------------------------------------------------------------------------------
2153 void vvMainWindow::SetVFProperty(int subsampling, int scale, int log) {
2154 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2155 if (mSlicerManagers[index]->GetSlicer(0)->GetVF())
2157 for (int i = 0; i < 4; i++)
2159 mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
2160 mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
2162 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
2164 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(0);
2168 //------------------------------------------------------------------------------
2170 //------------------------------------------------------------------------------
2171 void vvMainWindow::SetOverlayProperty(int color) {
2172 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2173 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay())
2175 mSlicerManagers[index]->SetOverlayColor(color);
2176 mSlicerManagers[index]->SetColorMap(0);
2177 mSlicerManagers[index]->Render();
2180 //------------------------------------------------------------------------------
2182 //------------------------------------------------------------------------------
2183 void vvMainWindow::SetFusionProperty(int opacity, int colormap,double window, double level) {
2184 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2185 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion())
2187 mSlicerManagers[index]->SetFusionOpacity(opacity);
2188 mSlicerManagers[index]->SetFusionColorMap(colormap);
2189 mSlicerManagers[index]->SetFusionWindow(window);
2190 mSlicerManagers[index]->SetFusionLevel(level);
2191 mSlicerManagers[index]->SetColorMap(0);
2192 mSlicerManagers[index]->Render();
2195 //------------------------------------------------------------------------------
2197 //------------------------------------------------------------------------------
2198 void vvMainWindow::SaveAs() {
2199 if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector")
2201 QMessageBox::warning(this,tr("Unsupported type"),tr("Sorry, saving a vector field is unsupported for the moment"));
2205 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2206 int dimension = mSlicerManagers[index]->GetDimension();
2207 QStringList OutputListeFormat;
2208 OutputListeFormat.clear();
2211 OutputListeFormat.push_back(".mhd");
2215 OutputListeFormat.push_back(".bmp");
2216 OutputListeFormat.push_back(".png");
2217 OutputListeFormat.push_back(".jpeg");
2218 OutputListeFormat.push_back(".tif");
2219 OutputListeFormat.push_back(".mhd");
2220 OutputListeFormat.push_back(".hdr");
2221 OutputListeFormat.push_back(".vox");
2223 else if (dimension == 3)
2225 OutputListeFormat.push_back(".mhd");
2226 OutputListeFormat.push_back(".hdr");
2227 OutputListeFormat.push_back(".vox");
2229 else if (dimension == 4)
2231 OutputListeFormat.push_back(".mhd");
2233 QString Extensions = "AllFiles(*.*)";
2234 for (int i = 0; i < OutputListeFormat.count(); i++)
2236 Extensions += ";;Images ( *";
2237 Extensions += OutputListeFormat[i];
2240 QString fileName = QFileDialog::getSaveFileName(this,
2242 mSlicerManagers[index]->GetFileName().c_str(),
2244 if (!fileName.isEmpty())
2246 std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
2247 if (OutputListeFormat.contains(
2248 fileformat.c_str()))
2250 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2251 std::string action = "Saving";
2252 vvProgressDialog progress("Saving "+fileName.toStdString());
2253 qApp->processEvents();
2254 vvImageWriter *writer = new vvImageWriter;
2255 writer->SetOutputFileName(fileName.toStdString());
2256 writer->SetInput(mSlicerManagers[index]->GetImage());
2258 QApplication::restoreOverrideCursor();
2259 if (writer->GetLastError().size())
2261 QString error = "Saving did not succeed\n";
2262 error += writer->GetLastError().c_str();
2263 QMessageBox::information(this,tr("Saving Problem"),error);
2269 QString error = fileformat.c_str();
2270 if (error.isEmpty())
2271 error += "no file format specified !";
2273 error += " format unknown !!!\n";
2274 QMessageBox::information(this,tr("Saving Problem"),error);
2279 //------------------------------------------------------------------------------
2281 //------------------------------------------------------------------------------
2282 void vvMainWindow::AddLink(QString image1,QString image2) {
2283 for (unsigned int i = 0; i < mSlicerManagers.size();i++)
2285 if (image1.toStdString() == mSlicerManagers[i]->GetId())
2287 mSlicerManagers[i]->AddLink(image2.toStdString());
2289 if (image2.toStdString() == mSlicerManagers[i]->GetId())
2291 mSlicerManagers[i]->AddLink(image1.toStdString());
2295 //------------------------------------------------------------------------------
2297 //------------------------------------------------------------------------------
2298 void vvMainWindow::RemoveLink(QString image1,QString image2) {
2299 for (unsigned int i = 0; i < mSlicerManagers.size();i++)
2301 if (image1.toStdString() == mSlicerManagers[i]->GetId())
2303 mSlicerManagers[i]->RemoveLink(image2.toStdString());
2305 if (image2.toStdString() == mSlicerManagers[i]->GetId())
2307 mSlicerManagers[i]->RemoveLink(image1.toStdString());
2311 //------------------------------------------------------------------------------
2313 void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
2315 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
2317 if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1)
2319 for (int j = 0; j < 4; j++)
2321 mSlicerManagers[i]->SetTSliceInSlicer(value,j);
2322 //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
2323 //UpdateTSlice(j,value);
2325 mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
2331 //------------------------------------------------------------------------------
2332 void vvMainWindow::NOHorizontalSliderMoved() {
2333 HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
2335 //------------------------------------------------------------------------------
2337 //------------------------------------------------------------------------------
2338 void vvMainWindow::NEHorizontalSliderMoved() {
2339 HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
2341 //------------------------------------------------------------------------------
2343 //------------------------------------------------------------------------------
2344 void vvMainWindow::SOHorizontalSliderMoved() {
2345 HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
2347 //------------------------------------------------------------------------------
2349 //------------------------------------------------------------------------------
2350 void vvMainWindow::SEHorizontalSliderMoved() {
2351 HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
2353 //------------------------------------------------------------------------------
2355 //------------------------------------------------------------------------------
2356 void vvMainWindow::NOVerticalSliderChanged() {
2357 int value = NOVerticalSlider->value();
2358 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
2360 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
2362 mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
2363 mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ?
2368 //------------------------------------------------------------------------------
2370 //------------------------------------------------------------------------------
2371 void vvMainWindow::NEVerticalSliderChanged() {
2372 int value = NEVerticalSlider->value();
2373 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
2375 if (DataTree->topLevelItem(i)->data(COLUMN_UR_VIEW,Qt::CheckStateRole).toInt() > 1)
2377 mSlicerManagers[i]->GetSlicer(1)->SetSlice(value);
2382 //------------------------------------------------------------------------------
2384 //------------------------------------------------------------------------------
2385 void vvMainWindow::SOVerticalSliderChanged() {
2386 int value = SOVerticalSlider->value();
2387 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
2389 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
2391 mSlicerManagers[i]->GetSlicer(2)->SetSlice(value);
2396 //------------------------------------------------------------------------------
2398 //------------------------------------------------------------------------------
2399 void vvMainWindow::SEVerticalSliderChanged() {
2400 int value = SEVerticalSlider->value();
2401 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
2403 if (DataTree->topLevelItem(i)->data(COLUMN_DR_VIEW,Qt::CheckStateRole).toInt() > 1)
2405 mSlicerManagers[i]->GetSlicer(3)->SetSlice(value);
2410 //------------------------------------------------------------------------------
2412 //------------------------------------------------------------------------------
2413 void vvMainWindow::UpdateSlice(int slicer, int slice) {
2415 if (slice != NOVerticalSlider->value())
2416 NOVerticalSlider->setValue(slice);
2418 else if (slicer == 1)
2419 NEVerticalSlider->setValue(slice);
2420 else if (slicer == 2)
2421 SOVerticalSlider->setValue(slice);
2422 else if (slicer == 3)
2423 SEVerticalSlider->setValue(slice);
2425 //------------------------------------------------------------------------------
2427 //------------------------------------------------------------------------------
2428 void vvMainWindow::UpdateTSlice(int slicer, int slice) {
2432 NOHorizontalSlider->setValue(slice);
2435 NEHorizontalSlider->setValue(slice);
2438 SOHorizontalSlider->setValue(slice);
2441 SEHorizontalSlider->setValue(slice);
2445 //------------------------------------------------------------------------------
2447 //------------------------------------------------------------------------------
2448 void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax) {
2449 int position = int((min+max)/2);
2450 int tPosition = int((tmin+tmax)/2);
2453 NOVerticalSlider->setValue(position);
2454 NOVerticalSlider->setRange(min,max);
2455 NOHorizontalSlider->setRange(tmin,tmax);
2456 NOHorizontalSlider->setValue(tPosition);
2458 else if (slicer == 1)
2460 NEVerticalSlider->setValue(position);
2461 NEVerticalSlider->setRange(min,max);
2462 NEHorizontalSlider->setRange(tmin,tmax);
2463 NEHorizontalSlider->setValue(tPosition);
2465 else if (slicer == 2)
2467 SOVerticalSlider->setValue(position);
2468 SOVerticalSlider->setRange(min,max);
2469 SOHorizontalSlider->setRange(tmin,tmax);
2470 SOHorizontalSlider->setValue(tPosition);
2472 else if (slicer == 3)
2474 SEVerticalSlider->setValue(position);
2475 SEVerticalSlider->setRange(min,max);
2476 SEHorizontalSlider->setRange(tmin,tmax);
2477 SEHorizontalSlider->setValue(tPosition);
2480 //------------------------------------------------------------------------------
2482 //------------------------------------------------------------------------------
2483 void vvMainWindow::SaveNOScreenshot() {
2484 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2485 w2i->SetInput(NOViewWidget->GetRenderWindow());
2487 SaveScreenshot(w2i->GetOutput());
2490 //------------------------------------------------------------------------------
2492 //------------------------------------------------------------------------------
2493 void vvMainWindow::SaveNEScreenshot() {
2494 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2495 w2i->SetInput(NEViewWidget->GetRenderWindow());
2497 SaveScreenshot(w2i->GetOutput());
2500 //------------------------------------------------------------------------------
2502 //------------------------------------------------------------------------------
2503 void vvMainWindow::SaveSOScreenshot() {
2504 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2505 w2i->SetInput(SOViewWidget->GetRenderWindow());
2507 SaveScreenshot(w2i->GetOutput());
2510 //------------------------------------------------------------------------------
2512 //------------------------------------------------------------------------------
2513 void vvMainWindow::SaveSEScreenshot() {
2514 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2515 w2i->SetInput(SEViewWidget->GetRenderWindow());
2517 SaveScreenshot(w2i->GetOutput());
2520 //------------------------------------------------------------------------------
2522 //------------------------------------------------------------------------------
2523 void vvMainWindow::SaveScreenshot(vtkImageData* image) {
2524 QString Extensions = "Images( *.png);;";
2525 Extensions += "Images( *.jpg);;";
2526 Extensions += "Images( *.bmp);;";
2527 Extensions += "Images( *.tif);;";
2528 Extensions += "Images( *.ppm)";
2529 QString fileName = QFileDialog::getSaveFileName(this,
2531 itksys::SystemTools::GetFilenamePath(
2532 mSlicerManagers[0]->GetFileName()).c_str(),
2534 if (!fileName.isEmpty())
2536 const char *ext = fileName.toStdString().c_str() + strlen(fileName.toStdString().c_str()) - 4;
2537 if (!strcmp(ext, ".bmp"))
2539 vtkBMPWriter *bmp = vtkBMPWriter::New();
2540 bmp->SetInput(image);
2541 bmp->SetFileName(fileName.toStdString().c_str());
2545 else if (!strcmp(ext, ".tif"))
2547 vtkTIFFWriter *tif = vtkTIFFWriter::New();
2548 tif->SetInput(image);
2549 tif->SetFileName(fileName.toStdString().c_str());
2553 else if (!strcmp(ext, ".ppm"))
2555 vtkPNMWriter *pnm = vtkPNMWriter::New();
2556 pnm->SetInput(image);
2557 pnm->SetFileName(fileName.toStdString().c_str());
2561 else if (!strcmp(ext, ".png"))
2563 vtkPNGWriter *png = vtkPNGWriter::New();
2564 png->SetInput(image);
2565 png->SetFileName(fileName.toStdString().c_str());
2569 else if (!strcmp(ext, ".jpg"))
2571 vtkJPEGWriter *jpg = vtkJPEGWriter::New();
2572 jpg->SetInput(image);
2573 jpg->SetFileName(fileName.toStdString().c_str());
2579 QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
2584 //------------------------------------------------------------------------------
2586 //------------------------------------------------------------------------------
2587 void vvMainWindow::GoToCursor() {
2588 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2589 for (int column = 1; column < 5; column++)
2591 if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1)
2593 double* cursorPos = mSlicerManagers[index]->GetSlicer(column-1)->GetCursorPosition();
2594 mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
2595 cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
2596 mSlicerManagers[index]->UpdateViews(1,column-1);
2597 mSlicerManagers[index]->UpdateLinked(column-1);
2602 //------------------------------------------------------------------------------
2604 //------------------------------------------------------------------------------
2605 void vvMainWindow::PlayPause() {
2609 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_play.png")));
2615 int image_number=DataTree->topLevelItemCount();
2617 for (int i=0;i<image_number;i++)
2618 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1)
2626 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
2627 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2631 //------------------------------------------------------------------------------
2633 //------------------------------------------------------------------------------
2634 void vvMainWindow::PlayNext() {
2635 if (playMode && !this->isHidden())
2637 int image_number=DataTree->topLevelItemCount();
2638 ///Only play one slicer per SM, and only if the SM is being displayed
2639 for (int i=0;i<image_number;i++)
2640 for (int j=0;j<4;j++)
2641 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1 &&
2642 DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0)
2644 mSlicerManagers[i]->SetNextTSlice(j);
2647 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2650 //------------------------------------------------------------------------------
2652 void vvMainWindow::ShowLastImage()
2654 if (mSlicerManagers.size() > 1)
2656 QTreeWidgetItem * item=DataTree->topLevelItem(DataTree->topLevelItemCount()-1);
2657 CurrentImageChanged(mSlicerManagers.back()->GetId()); //select new image
2658 item->setData(1,Qt::CheckStateRole,2); //show the new image in the first panel
2659 DisplayChanged(item,1);
2663 //------------------------------------------------------------------------------
2664 void vvMainWindow::UpdateRenderWindows() {
2665 if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
2666 if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
2667 if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
2668 if (SEViewWidget->GetRenderWindow()) SEViewWidget->GetRenderWindow()->Render();
2670 //------------------------------------------------------------------------------
2672 //------------------------------------------------------------------------------
2673 void vvMainWindow::ResampleCurrentImage() {
2674 vvResamplerDialog resampler;
2675 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2676 resampler.SetSlicerManagers(mSlicerManagers,index);
2677 if (resampler.exec())
2678 AddImage(resampler.GetOutput(),resampler.GetOutputFileName());
2680 //------------------------------------------------------------------------------
2682 //------------------------------------------------------------------------------
2683 void vvMainWindow::SegmentationOnCurrentImage() {
2684 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2686 vvSegmentationDialog segmentation;
2687 segmentation.SetImage(mSlicerManagers[index]->GetSlicer(0)->GetImage());
2688 segmentation.exec();
2690 //------------------------------------------------------------------------------
2692 void vvMainWindow::SurfaceViewerLaunch()
2694 vvSurfaceViewerDialog surfaceViewer;
2695 surfaceViewer.exec();
2698 //------------------------------------------------------------------------------
2699 void vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
2701 vvSlicerManager* m = new vvSlicerManager(4);
2703 m->SetFilename(filename);
2707 //------------------------------------------------------------------------------
2708 void vvMainWindow::AddImage(vvSlicerManager * slicer_manager) {
2709 mSlicerManagers.push_back(slicer_manager);
2711 std::string filename = slicer_manager->GetFileName();
2713 //create an item in the tree with good settings
2714 QTreeWidgetItem *item = new QTreeWidgetItem();
2715 item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
2716 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
2717 qApp->processEvents();
2719 for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1);
2721 //Create the buttons for reload and close
2722 qApp->processEvents();
2723 QTreePushButton* cButton = new QTreePushButton;
2724 cButton->setItem(item);
2725 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2726 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2727 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2728 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2730 QTreePushButton* rButton = new QTreePushButton;
2731 rButton->setItem(item);
2732 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2733 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2734 rButton->setEnabled(0);
2735 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2736 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2738 DataTree->addTopLevelItem(item);
2739 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2740 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2742 //set the id of the image
2743 QString id = slicer_manager->GetFileName().c_str() + QString::number(mSlicerManagers.size()-1);
2744 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2745 mSlicerManagers.back()->SetId(id.toStdString());
2747 linkPanel->addImage(filename, id.toStdString());
2749 connect(mSlicerManagers.back(),SIGNAL(currentImageChanged(std::string)),
2750 this,SLOT(CurrentImageChanged(std::string)));
2751 connect(mSlicerManagers.back(),SIGNAL(
2752 UpdatePosition(int, double, double, double, double, double, double, double)),this,
2753 SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
2754 connect(mSlicerManagers.back(),SIGNAL(UpdateVector(int, double, double, double, double)),
2755 this, SLOT(VectorChanged(int,double,double,double, double)));
2756 connect(mSlicerManagers.back(),SIGNAL(UpdateOverlay(int, double, double)),
2757 this, SLOT(OverlayChanged(int,double,double)));
2758 connect(mSlicerManagers.back(),SIGNAL(UpdateFusion(int, double)),
2759 this, SLOT(FusionChanged(int,double)));
2760 connect(mSlicerManagers.back(),SIGNAL(UpdateWindows(int, int, int)),
2761 this,SLOT(WindowsChanged(int, int, int)));
2762 connect(mSlicerManagers.back(),SIGNAL(WindowLevelChanged(double, double,int, int)),
2763 this,SLOT(WindowLevelChanged(double, double, int, int)));
2764 connect(mSlicerManagers.back(),SIGNAL(UpdateSlice(int,int)),
2765 this,SLOT(UpdateSlice(int,int)));
2766 connect(mSlicerManagers.back(),SIGNAL(UpdateTSlice(int, int)),
2767 this,SLOT(UpdateTSlice(int, int)));
2768 connect(mSlicerManagers.back(),SIGNAL(UpdateSliceRange(int,int,int,int,int)),
2769 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
2770 connect(mSlicerManagers.back(),SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
2771 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
2772 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
2774 qApp->processEvents();
2778 qApp->processEvents();
2780 //------------------------------------------------------------------------------
2783 //------------------------------------------------------------------------------
2784 void vvMainWindow::UpdateCurrentSlicer() {
2786 if (DataTree->selectedItems().size() > 0) {
2787 index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2789 mSlicerManagerCurrentIndex = index;
2791 //------------------------------------------------------------------------------