1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://www.centreleonberard.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ===========================================================================**/
20 #include <QMessageBox>
21 #include <QInputDialog>
23 #include "QTreePushButton.h"
28 #include "vvMainWindow.h"
29 #include "vvHelpDialog.h"
30 #include "vvRegisterForm.h"
31 #include "vvDocumentation.h"
32 #include "vvProgressDialog.h"
33 #include "vvQDicomSeriesSelector.h"
34 #include "vvSlicerManager.h"
35 #include "clitkImageCommon.h"
37 #include "vvInteractorStyleNavigator.h"
38 #include "vvImageWriter.h"
39 #include "vvSegmentationDialog.h"
40 #include "vvSurfaceViewerDialog.h"
41 #include "vvDeformationDialog.h"
42 #include "vvImageWarp.h"
44 #include "vvMidPosition.h"
46 #include "vvStructSelector.h"
47 #include "vvMeshReader.h"
48 #include "vvSaveState.h"
49 #include "vvReadState.h"
50 #include "clitkConfiguration.h"
54 #include <itkImageFileReader.h>
55 #include <itkByteSwapper.h>
56 #include <itkCommand.h>
57 #include <itkNumericSeriesFileNames.h>
60 #include <vtkImageData.h>
61 #include <vtkImageActor.h>
62 #include <vtkCornerAnnotation.h>
63 #include <vtkRenderWindow.h>
64 #include <vtkRenderWindowInteractor.h>
65 #include <vtkRenderer.h>
66 #include <vtkRendererCollection.h>
67 #include <vtkWindowToImageFilter.h>
68 #include <vtkBMPWriter.h>
69 #include <vtkTIFFWriter.h>
70 #include <vtkPNMWriter.h>
71 #include <vtkPNGWriter.h>
72 #include <vtkJPEGWriter.h>
73 #ifdef VTK_USE_FFMPEG_ENCODER
74 # include <vtkFFMPEGWriter.h>
76 #ifdef VTK_USE_MPEG2_ENCODER
77 # include <vtkMPEG2Writer.h>
79 #include <vtkMatrix4x4.h>
80 #include <vtkTransform.h>
88 #define COLUMN_UL_VIEW 1
89 #define COLUMN_UR_VIEW 2
90 #define COLUMN_DL_VIEW 3
91 #define COLUMN_DR_VIEW 4
92 #define COLUMN_CLOSE_IMAGE 5
93 #define COLUMN_RELOAD_IMAGE 6
94 #define COLUMN_IMAGE_NAME 7
96 #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN )"
99 0,Qt::UserRole full filename
100 1,Qt::CheckStateRole checkbutton UL View
101 1,Qt::UserRole overlay, fusion or vector
102 2,Qt::CheckStateRole checkbutton UR View
103 3,Qt::CheckStateRole checkbutton DL View
104 4,Qt::CheckStateRole checkbutton DR View
106 5,Qt::UserRole mSlicerManager id*/
108 //------------------------------------------------------------------------------
109 vvMainWindow::vvMainWindow():vvMainWindowBase()
111 setupUi(this); // this sets up the GUI
114 mMenuTools = menuTools;
115 // mMenuSegmentation = menuSegmentation;
116 mContextMenu = &contextMenu;
117 mMenuExperimentalTools = menuExperimental;
120 mCurrentSelectedImageId = "";
121 mCurrentPickedImageId = "";
122 mCurrentPickedImageIndex = 0;
124 //Init the contextMenu
125 this->setContextMenuPolicy(Qt::CustomContextMenu);
126 contextActions.resize(0);
127 QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
128 tr("O&pen new Image"));
129 actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
130 connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
131 contextActions.push_back(actionOpen_new_image);
132 contextMenu.addSeparator();
134 QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
135 tr("Close Current Image"));
136 connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
137 contextActions.push_back(actionClose_Image);
139 QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
140 tr("Reload Current Image"));
141 connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
142 contextActions.push_back(actionReload_image);
144 QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
145 tr("Save Current Image"));
146 connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
147 contextActions.push_back(actionSave_image);
149 QAction* actionSave_state = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
150 tr("Save Current State"));
151 connect(actionSave_state,SIGNAL(triggered()),this,SLOT(SaveCurrentState()));
152 contextActions.push_back(actionSave_state);
154 QAction* actionRead_state = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
155 tr("Read Saved State"));
156 connect(actionRead_state,SIGNAL(triggered()),this,SLOT(ReadSavedState()));
157 contextActions.push_back(actionRead_state);
159 contextMenu.addSeparator();
161 contextMenu.addAction(actionAdd_VF_to_current_Image);
162 contextActions.push_back(actionAdd_VF_to_current_Image);
164 //QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
165 // tr("Add overlay image to current image"));
166 contextMenu.addAction(actionAdd_overlay_image_to_current_image);
167 contextActions.push_back(actionAdd_overlay_image_to_current_image);
169 contextMenu.addAction(actionAdd_fusion_image);
170 contextActions.push_back(actionAdd_fusion_image);
172 contextMenu.addSeparator();
173 QAction* actionResetMatrix = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/identity.png")),
174 tr("Reset transformation to identity"));
175 connect(actionResetMatrix, SIGNAL(triggered()), this,SLOT(ResetTransformationToIdentity()));
179 QMenu * m = new QMenu(menubar);
181 // m->setObjectName(QString::fromUtf8("TOTOTO"));
182 contextMenu.addMenu(m);
183 QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
185 QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
189 connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
193 mSlicerManagers.resize(0);
203 header.append("Name");
205 DataTree->setHeaderLabels(header);
206 DataTree->resizeColumnToContents(COLUMN_TREE);
207 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
208 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
209 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
210 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
211 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
212 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
213 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
216 documentation = new vvDocumentation();
217 help_dialog = new vvHelpDialog();
218 dicomSeriesSelector = new vvDicomSeriesSelector();
220 inverseButton->setEnabled(0);
221 actionAdd_overlay_image_to_current_image->setEnabled(0);
222 actionSave_As->setEnabled(0);
223 actionAdd_VF_to_current_Image->setEnabled(0);
224 actionAdd_fusion_image->setEnabled(0);
227 verticalSliders.push_back(NOVerticalSlider);
228 verticalSliders.push_back(NEVerticalSlider);
229 verticalSliders.push_back(SOVerticalSlider);
230 verticalSliders.push_back(SEVerticalSlider);
232 for (int i =0; i < 4; i++)
233 verticalSliders[i]->hide();
235 horizontalSliders.push_back(NOHorizontalSlider);
236 horizontalSliders.push_back(NEHorizontalSlider);
237 horizontalSliders.push_back(SOHorizontalSlider);
238 horizontalSliders.push_back(SEHorizontalSlider);
240 for (int i =0; i < 4; i++)
241 horizontalSliders[i]->hide();
244 connect(NOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOVerticalSliderChanged()));
245 connect(NEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEVerticalSliderChanged()));
246 connect(SOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOVerticalSliderChanged()));
247 connect(SEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEVerticalSliderChanged()));
249 connect(NOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOHorizontalSliderMoved()));
250 connect(NEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEHorizontalSliderMoved()));
251 connect(SOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOHorizontalSliderMoved()));
252 connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved()));
255 connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition()));
256 connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration()));
257 connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
258 connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
259 connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
260 connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
261 connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
262 connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
263 connect(actionSlice_Image_As_Multiple_Images,SIGNAL(triggered()),this,SLOT(SliceImages()));
264 connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
265 connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
266 connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
267 connect(actionSave_current_state,SIGNAL(triggered()),this,SLOT(SaveCurrentState()));
268 connect(actionRead_saved_state,SIGNAL(triggered()),this,SLOT(ReadSavedState()));
269 connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
270 connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
271 connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
272 connect(actionAdd_overlay_image_to_current_image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage())); connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
273 connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
274 connect(actionRegister_vv,SIGNAL(triggered()),this,SLOT(PopupRegisterForm()));
276 ///////////////////////////////////////////////
277 connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
278 connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
279 ///////////////////////////////////////////////
281 actionNorth_East_Window->setEnabled(0);
282 actionNorth_West_Window->setEnabled(0);
283 actionSouth_East_Window->setEnabled(0);
284 actionSouth_West_Window->setEnabled(0);
286 connect(actionNorth_East_Window,SIGNAL(triggered()),this,SLOT(SaveNEScreenshot()));
287 connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
288 connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
289 connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
290 connect(actionSave_all_slices,SIGNAL(triggered()),this,SLOT(SaveScreenshotAllSlices()));
292 connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
293 connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
294 SLOT(DisplayChanged(QTreeWidgetItem*, int)));
296 connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
297 connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
298 connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
299 connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
300 connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
301 connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
302 connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages()));
305 connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
307 connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
308 connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
309 connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double)));
310 connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int,int,double,double)),
311 this,SLOT(SetOverlayProperty(int,int,double,double)));
312 connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,int,double,double)),
313 this,SLOT(SetFusionProperty(int,int,int,double,double)));
314 connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
318 playButton->setEnabled(0);
319 frameRateLabel->setEnabled(0);
320 frameRateSpinBox->setEnabled(0);
321 connect(playButton, SIGNAL(clicked()),this,SLOT(PlayPause()));
322 connect(frameRateSpinBox, SIGNAL(valueChanged(int)),this,SLOT(ChangeFrameRate(int)));
324 goToCursorPushButton->setEnabled(0);
325 connect(goToCursorPushButton, SIGNAL(clicked()),this,SLOT(GoToCursor()));
327 NOViewWidget->hide();
328 NEViewWidget->hide();
329 SOViewWidget->hide();
330 SEViewWidget->hide();
332 //Recently opened files
333 std::list<std::string> recent_files = GetRecentlyOpenedImages();
334 recentlyOpenedFilesMenu=NULL;
335 if ( !recent_files.empty() ) {
336 createRecentlyOpenedFilesMenu();
337 updateRecentlyOpenedFilesMenu(recent_files);
340 // Adding all new tools (insertion in the menu)
341 vvToolManager::GetInstance()->InsertToolsInMenu(this);
342 vvToolManager::GetInstance()->EnableToolsInMenu(this, false);
344 if (!CLITK_EXPERIMENTAL)
345 menuExperimental->menuAction()->setVisible(false);
348 QTimer * timerMemory = new QTimer(this);
349 //timerMemory->setInterval(5);
350 connect(timerMemory, SIGNAL(timeout()), this, SLOT(UpdateMemoryUsage()));
351 timerMemory->start(2000);
353 //------------------------------------------------------------------------------
354 void vvMainWindow::show()
356 vvMainWindowBase::show();
357 PopupRegisterForm(true);
359 //------------------------------------------------------------------------------
360 void vvMainWindow::UpdateMemoryUsage()
362 // clitk::PrintMemory(true);
363 if (clitk::GetMemoryUsageInMb() == 0) infoPanel->setMemoryInMb("NA");
364 else infoPanel->setMemoryInMb(QString::number(clitk::GetMemoryUsageInMb())+" MiB");
366 //------------------------------------------------------------------------------
369 //------------------------------------------------------------------------------
370 void vvMainWindow::createRecentlyOpenedFilesMenu()
372 recentlyOpenedFilesMenu = new QMenu("Recently opened files...");
373 recentlyOpenedFilesMenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
374 menuFile->insertMenu(actionOpen_Image_With_Time,recentlyOpenedFilesMenu);
375 menuFile->insertSeparator(actionOpen_Image_With_Time);
377 //------------------------------------------------------------------------------
380 //------------------------------------------------------------------------------
382 void vvMainWindow::updateRecentlyOpenedFilesMenu(const std::list<std::string> &recent_files)
384 if(recentlyOpenedFilesMenu==NULL) {
385 createRecentlyOpenedFilesMenu();
387 recentlyOpenedFilesMenu->clear();
389 for (std::list<std::string>::const_iterator i = recent_files.begin(); i!=recent_files.end(); i++) {
390 QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")), i->c_str(),this);
391 recentlyOpenedFilesMenu->addAction(current);
392 connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage()));
395 //------------------------------------------------------------------------------
398 //------------------------------------------------------------------------------
399 void vvMainWindow::ComputeMidPosition()
402 int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
403 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
404 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
407 midp.slicer_manager = mSlicerManagers[index];
408 midp.reference_image_index = ref;
409 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
412 QMessageBox::warning(this, "Error computing midposition image",midp.error_message.c_str());
414 QFileInfo info(midp.slicer_manager->GetFileName().c_str());
415 AddImage(midp.output,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_midposition.mhd");
417 QApplication::restoreOverrideCursor();
420 //------------------------------------------------------------------------------
423 //------------------------------------------------------------------------------
424 void vvMainWindow::AddContour(int image_index, vvMesh::Pointer contour, bool propagation)
426 QTreeWidgetItem *item = new QTreeWidgetItem();
427 item->setData(0,Qt::UserRole,"filename.vtk");
428 item->setData(1,Qt::UserRole,tr("contour"));
430 brush.setColor(QColor(contour->r*255,contour->g*255,contour->b*255));
431 brush.setStyle(Qt::SolidPattern);
432 item->setData(COLUMN_IMAGE_NAME,Qt::BackgroundRole,brush);
433 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
435 for (int j = 1; j <= 4; j++)
436 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(image_index)->data(j,Qt::CheckStateRole));
438 QTreePushButton* cButton = new QTreePushButton;
439 cButton->setItem(item);
440 cButton->setColumn(COLUMN_CLOSE_IMAGE);
441 cButton->setToolTip(tr("close image"));
442 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
443 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
444 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
446 QTreePushButton* rButton = new QTreePushButton;
447 rButton->setItem(item);
448 rButton->setColumn(COLUMN_RELOAD_IMAGE);
449 rButton->setToolTip(tr("reload image"));
450 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
451 rButton->setEnabled(false);
453 //connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
454 //this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
456 DataTree->topLevelItem(image_index)->setExpanded(1);
457 DataTree->topLevelItem(image_index)->addChild(item);
458 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
459 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
460 QString id = DataTree->topLevelItem(image_index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
461 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
464 mSlicerManagers[image_index]->AddContour(contour,propagation);
465 mSlicerManagers[image_index]->Render();
467 //------------------------------------------------------------------------------
470 //------------------------------------------------------------------------------
471 void vvMainWindow::OpenVTKContour()
473 if (mSlicerManagers.size() > 0) {
474 QString Extensions = "Images ( *.vtk *.obj)";
475 Extensions += ";;All Files (*)";
476 QString file = QFileDialog::getOpenFileName(this,tr("Open vtkPolyData"),mInputPathName,Extensions);
479 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
480 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
482 reader.SetImage(mSlicerManagers[index]->GetImage());
483 reader.SetModeToVTK();
484 reader.SetFilename(file.toStdString());
486 AddContour(index,reader.GetOutput()[0],false);
487 QApplication::restoreOverrideCursor();
490 //------------------------------------------------------------------------------
493 //------------------------------------------------------------------------------
494 void vvMainWindow::OpenDCStructContour()
496 if (mSlicerManagers.size() > 0) {
497 QString Extensions = "Dicom Files ( *.dcm RS*)";
498 Extensions += ";;All Files (*)";
499 QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
502 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
504 reader.SetFilename(file.toStdString());
505 vvStructSelector selector;
506 selector.SetStructures(reader.GetROINames());
507 if (!mSlicerManagers[index]->GetVF().IsNull())
508 selector.EnablePropagationCheckBox();
509 if (selector.exec()) {
510 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
511 reader.SetSelectedItems(selector.getSelectedItems());
512 reader.SetImage(mSlicerManagers[index]->GetImage());
513 if (selector.PropagationEnabled())
514 reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
516 std::vector<vvMesh::Pointer> contours=reader.GetOutput();
517 for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
518 i!=contours.end(); i++)
519 AddContour(index,*i,selector.PropagationEnabled());
520 QApplication::restoreOverrideCursor();
524 //------------------------------------------------------------------------------
527 //------------------------------------------------------------------------------
528 void vvMainWindow::ComputeDeformableRegistration()
530 if (mSlicerManagers.size() > 0) {
531 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
532 vvDeformationDialog dialog(index,mSlicerManagers);
534 std::string base_name=itksys::SystemTools::GetFilenameWithoutExtension(mSlicerManagers[dialog.GetInputFileIndex()]->GetFileName());
535 AddField(dialog.GetOutput(),dialog.getFieldFile(),dialog.GetInputFileIndex());
536 WarpImage(dialog.GetSelectedSlicer(),dialog.GetReferenceFrameIndex());
538 std::cout << "Error or user cancellation while computing deformation field..." << std::endl;
539 } else QMessageBox::information(this, "Need to open image","You must open an image first.");
541 //------------------------------------------------------------------------------
544 //------------------------------------------------------------------------------
545 void vvMainWindow::WarpImage()
547 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
548 if (!mSlicerManagers[index]->GetVF().IsNull()) {
550 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
551 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
553 WarpImage(mSlicerManagers[index],ref);
556 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field"));
558 //------------------------------------------------------------------------------
561 //------------------------------------------------------------------------------
562 void vvMainWindow::WarpImage(vvSlicerManager* selected_slicer,int reference_phase)
564 if (!selected_slicer->GetVF().IsNull()) {
565 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
566 QFileInfo info(selected_slicer->GetFileName().c_str());
567 vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
568 reference_phase,this);
569 if (warp.ComputeWarpedImage()) {
570 AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
571 AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
572 AddImage(warp.GetJacobianImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_jacobian.mhd");
573 QApplication::restoreOverrideCursor();
575 QApplication::restoreOverrideCursor();
576 QMessageBox::warning(this,tr("Different spacings"),tr("The vector field and image spacings must be the same in order to warp."));
579 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field."));
581 //------------------------------------------------------------------------------
584 //------------------------------------------------------------------------------
585 vvMainWindow::~vvMainWindow()
587 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
588 if (mSlicerManagers[i] != NULL)
589 delete mSlicerManagers[i];
592 //------------------------------------------------------------------------------
594 //------------------------------------------------------------------------------
595 QTabWidget * vvMainWindow::GetTab()
599 //------------------------------------------------------------------------------
602 //------------------------------------------------------------------------------
603 void vvMainWindow::MergeImages()
605 QString Extensions = EXTENSIONS;
606 Extensions += ";;All Files (*)";
607 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images"),mInputPathName,Extensions);
610 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
611 std::vector<std::string> vector;
613 unsigned int currentDim = 0;
614 std::vector<double> currentSpacing;
615 std::vector<int> currentSize;
616 std::vector<double> currentOrigin;
618 for (int i = 0; i < files.size(); i++) {
619 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
620 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
621 reader->SetFileName(files[i].toStdString().c_str());
622 reader->ReadImageInformation();
624 //NOViewWidget->hide();
625 //NEViewWidget->hide();
626 //SOViewWidget->hide();
627 //SEViewWidget->hide();
629 currentDim = reader->GetNumberOfDimensions();
631 for (unsigned int j = 0; j < currentDim; j++) {
634 currentSpacing.resize(currentDim);
635 currentSize.resize(currentDim);
636 currentOrigin.resize(currentDim);
638 currentOrigin[j] = reader->GetOrigin(j);
639 currentSpacing[j] = reader->GetSpacing(j);
640 currentSize[j] = reader->GetDimensions(j);
641 } else if (currentDim != reader->GetNumberOfDimensions()
642 || currentSpacing[j] != reader->GetSpacing(j)
643 || currentSize[j] != (int)reader->GetDimensions(j)
644 || currentOrigin[j] != reader->GetOrigin(j)) {
645 QString error = "Cannot read file (too different from others ";
646 error += files[i].toStdString().c_str();
647 QMessageBox::information(this,tr("Reading problem"),error);
653 vector.push_back(files[i].toStdString());
656 if (vector.size() > 0)
657 LoadImages(vector, vvImageReader::MERGED);
659 //------------------------------------------------------------------------------
661 //------------------------------------------------------------------------------
662 void vvMainWindow::SliceImages()
664 QString Extensions = EXTENSIONS;
665 Extensions += ";;All Files (*)";
667 QStringList files = QFileDialog::getOpenFileNames(this,tr("Slice Images"),mInputPathName,Extensions);
670 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
671 std::vector<std::string> vector;
672 for (int i = 0; i < files.size(); i++)
673 vector.push_back(files[i].toStdString());
674 LoadImages(vector, vvImageReader::SLICED);
676 //------------------------------------------------------------------------------
678 //------------------------------------------------------------------------------
679 void vvMainWindow::MergeImagesWithTime()
681 QString Extensions = EXTENSIONS;
682 Extensions += ";;All Files (*)";
683 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images With Time"),mInputPathName,Extensions);
686 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
687 std::vector<std::string> vector;
689 unsigned int currentDim = 0;
690 std::vector<double> currentSpacing;
691 std::vector<int> currentSize;
692 std::vector<double> currentOrigin;
694 for (int i = 0; i < files.size(); i++) {
695 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
696 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
698 reader->SetFileName(files[i].toStdString().c_str());
699 reader->ReadImageInformation();
701 currentDim = reader->GetNumberOfDimensions();
703 for (unsigned int j = 0; j < currentDim; j++) {
706 currentSpacing.resize(currentDim);
707 currentSize.resize(currentDim);
708 currentOrigin.resize(currentDim);
710 currentOrigin[j] = reader->GetOrigin(j);
711 currentSpacing[j] = reader->GetSpacing(j);
712 currentSize[j] = reader->GetDimensions(j);
713 } else if (currentDim != reader->GetNumberOfDimensions()
714 || currentSpacing[j] != reader->GetSpacing(j)
715 || currentSize[j] != (int)reader->GetDimensions(j)
716 || currentOrigin[j] != reader->GetOrigin(j)) {
717 QString error = "Cannot read file (too different from others ";
718 error += files[i].toStdString().c_str();
719 QMessageBox::information(this,tr("Reading problem"),error);
725 vector.push_back(files[i].toStdString());
727 QString error = "Cannot read file info for ";
728 error += files[i].toStdString().c_str();
730 error += "Maybe you're trying to open an image in an unsupported format?\n";
731 QMessageBox::information(this,tr("Reading problem"),error);
734 sort(vector.begin(),vector.end());
735 if (vector.size() > 1)
736 LoadImages(vector, vvImageReader::MERGEDWITHTIME);
738 QMessageBox::warning(this,tr("Reading problem"),"You need to select at least two images to merge images with time.\nIf you only want to open one image, please use the \"Open Image\" function.");
740 //------------------------------------------------------------------------------
743 //------------------------------------------------------------------------------
744 void vvMainWindow::OpenDicom()
746 std::vector<std::string> files;
748 std::cout << "dicomSeriesSelector " << std::endl;
749 if (dicomSeriesSelector->exec() == QDialog::Accepted) {
750 files = *(dicomSeriesSelector->GetFilenames());
751 LoadImages(files, vvImageReader::DICOM);
754 //------------------------------------------------------------------------------
756 //------------------------------------------------------------------------------
757 void vvMainWindow::OpenImages()
759 QString Extensions = EXTENSIONS;
760 Extensions += ";;All Files (*)";
762 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images"),mInputPathName,Extensions);
765 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
766 std::vector<std::string> vector;
767 for (int i = 0; i < files.size(); i++)
768 vector.push_back(files[i].toStdString());
769 LoadImages(vector, vvImageReader::IMAGE);
771 //------------------------------------------------------------------------------
772 void vvMainWindow::OpenRecentImage()
774 QAction * caller = qobject_cast<QAction*>(sender());
775 std::vector<std::string> images;
776 images.push_back(caller->text().toStdString());
777 mInputPathName = itksys::SystemTools::GetFilenamePath(images[0]).c_str();
778 LoadImages(images, vvImageReader::IMAGE);
780 //------------------------------------------------------------------------------
783 //------------------------------------------------------------------------------
784 void vvMainWindow::OpenImageWithTime()
786 QString Extensions = EXTENSIONS;
787 Extensions += ";;All Files (*)";
789 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images With Time"),mInputPathName,Extensions);
792 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
793 std::vector<std::string> vector;
794 for (int i = 0; i < files.size(); i++) {
795 vector.push_back(files[i].toStdString());
797 LoadImages(vector, vvImageReader::IMAGEWITHTIME);
799 //------------------------------------------------------------------------------
802 //------------------------------------------------------------------------------
803 void vvMainWindow::LoadImages(std::vector<std::string> files, vvImageReader::LoadedImageType filetype)
805 //Separate the way to open images and dicoms
807 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME)
808 fileSize = files.size();
812 // For SLICED, we need the number of slices (ndim and #slices)
813 std::vector<unsigned int> nSlices;
814 nSlices.resize(files.size());
815 std::fill(nSlices.begin(), nSlices.end(), 1);
816 if (filetype == vvImageReader::SLICED) {
817 for (int i = 0; i < fileSize; i++) {
818 itk::ImageIOBase::Pointer header = clitk::readImageHeader(files[i]);
819 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
822 QString error = "Cannot open file \n";
823 error += files[i].c_str();
824 QMessageBox::information(this,tr("Reading problem"),error);
827 if (header->GetNumberOfDimensions() < 3) {
829 QString error = "Dimension problem. Cannot slice \n";
830 error += files[i].c_str();
831 QMessageBox::information(this,tr("Reading problem"),error);
834 nSlices[i] = header->GetDimensions( header->GetNumberOfDimensions()-1 );
838 //Only add to the list of recently opened files when a single file is opened,
839 //to avoid polluting the list of recently opened files
840 if (files.size() == 1) {
841 QFileInfo finfo=tr(files[0].c_str());
842 AddToRecentlyOpenedImages(finfo.absoluteFilePath().toStdString());
843 updateRecentlyOpenedFilesMenu(GetRecentlyOpenedImages());
845 //init the progress events
846 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
847 vvProgressDialog progress("Opening " + files[0],fileSize>1);
848 qApp->processEvents();
850 int numberofsuccesulreads=0;
851 //open images as 1 or multiples
852 for (int i = 0; i < fileSize; i++) {
854 progress.SetText("Opening " + files[i]);
855 progress.SetProgress(i,fileSize);
856 qApp->processEvents();
858 for (unsigned int j = 0; j < nSlices[i]; j++) {
859 //read the image and put it in mSlicerManagers
860 vvSlicerManager* imageManager = new vvSlicerManager(4);
861 qApp->processEvents();
863 bool SetImageSucceed=false;
865 // Change filename if an image with the same already exist
866 int number = GetImageDuplicateFilenameNumber(files[i] + std::string("_slice"));
868 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME || filetype == vvImageReader::SLICED)
869 SetImageSucceed = imageManager->SetImage(files[i],filetype, number, j);
871 SetImageSucceed = imageManager->SetImages(files,filetype, number);
873 if (!SetImageSucceed) {
874 QApplication::restoreOverrideCursor();
875 QString error = "Cannot open file \n";
876 error += imageManager->GetLastError().c_str();
877 QMessageBox::information(this,tr("Reading problem"),error);
880 mSlicerManagers.push_back(imageManager);
882 //create an item in the tree with good settings
883 QTreeWidgetItem *item = new QTreeWidgetItem();
884 item->setData(0,Qt::UserRole,files[i].c_str());
885 QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
886 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
887 item->setData(1,Qt::UserRole,tr("image"));
888 item->setToolTip(COLUMN_IMAGE_NAME, imageManager->GetListOfAbsoluteFilePathInOneString("image").c_str());
889 qApp->processEvents();
891 //Create the buttons for reload and close
892 qApp->processEvents();
893 QTreePushButton* cButton = new QTreePushButton;
894 cButton->setItem(item);
895 cButton->setColumn(COLUMN_CLOSE_IMAGE);
896 cButton->setToolTip(tr("close image"));
897 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
898 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
899 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
901 QTreePushButton* rButton = new QTreePushButton;
902 rButton->setItem(item);
903 rButton->setColumn(COLUMN_RELOAD_IMAGE);
904 rButton->setToolTip(tr("reload image"));
905 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
906 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
907 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
909 DataTree->addTopLevelItem(item);
910 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
911 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
913 //set the id of the image
914 QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
915 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
916 mSlicerManagers.back()->SetId(id.toStdString());
918 linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
920 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
921 this,SLOT(CurrentImageChanged(std::string)));
922 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
923 this, SLOT(CurrentPickedImageChanged(std::string)));
924 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
925 this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
926 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
927 this, SLOT(VectorChanged(int,double,double,double, double)));
928 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
929 this, SLOT(OverlayChanged(int,double,double)));
930 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
931 this, SLOT(FusionChanged(int,double)));
932 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
933 this,SLOT(WindowLevelChanged()));
934 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
935 this,SLOT(UpdateSlice(int,int)));
936 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
937 this,SLOT(UpdateTSlice(int, int)));
938 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
939 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
940 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
941 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
942 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
943 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
944 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
945 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
946 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
948 numberofsuccesulreads++;
952 if (numberofsuccesulreads) {
953 NOViewWidget->show();
954 NEViewWidget->show();
955 SOViewWidget->show();
956 SEViewWidget->show();
961 // Try to guess default WindowLevel
963 mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
964 if ((range[0] == 0) && (range[1] == 1)) {
965 presetComboBox->setCurrentIndex(5);// binary
970 QApplication::restoreOverrideCursor();
972 //------------------------------------------------------------------------------
974 //------------------------------------------------------------------------------
975 void vvMainWindow::UpdateTree()
977 DataTree->resizeColumnToContents(COLUMN_TREE);
978 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
979 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
980 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
981 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
982 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
983 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
984 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
986 //------------------------------------------------------------------------------
988 //------------------------------------------------------------------------------
989 void vvMainWindow::CurrentImageChanged(std::string id)
991 if (id == mCurrentSelectedImageId) return; // Do nothing
993 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
994 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
997 DataTree->topLevelItem(i)->setSelected(0);
999 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
1000 DataTree->topLevelItem(i)->child(child)->setSelected(0);
1003 DataTree->topLevelItem(selected)->setSelected(1);
1004 mCurrentSelectedImageId = id;
1005 emit SelectedImageHasChanged(mSlicerManagers[selected]);
1007 //------------------------------------------------------------------------------
1009 //------------------------------------------------------------------------------
1010 void vvMainWindow::CurrentPickedImageChanged(std::string id)
1012 if (id == mCurrentPickedImageId) return; // Do nothing
1014 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1015 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
1018 DataTree->topLevelItem(i)->setSelected(0);
1020 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
1021 DataTree->topLevelItem(i)->child(child)->setSelected(0);
1024 DataTree->topLevelItem(selected)->setSelected(1);
1025 mCurrentPickedImageId = id;
1026 mCurrentPickedImageIndex = selected;
1028 //------------------------------------------------------------------------------
1030 //------------------------------------------------------------------------------
1031 void vvMainWindow::ImageInfoChanged()
1033 contextActions[6]->setEnabled(1);
1034 contextActions[5]->setEnabled(1);
1035 actionSave_As->setEnabled(1);
1036 actionAdd_VF_to_current_Image->setEnabled(1);
1037 actionAdd_fusion_image->setEnabled(1);
1038 actionAdd_overlay_image_to_current_image->setEnabled(1);
1039 actionNorth_East_Window->setEnabled(1);
1040 actionNorth_West_Window->setEnabled(1);
1041 actionSouth_East_Window->setEnabled(1);
1042 actionSouth_West_Window->setEnabled(1);
1043 vvToolManager::GetInstance()->EnableToolsInMenu(this, true);
1044 inverseButton->setEnabled(1);
1046 goToCursorPushButton->setEnabled(1);
1048 if (DataTree->selectedItems().size()) {
1049 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1051 colorMapComboBox->setEnabled(1);
1052 for (int i = 0; i < DataTree->topLevelItem(index)->childCount(); i++) {
1053 if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
1054 DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion") {
1055 colorMapComboBox->setEnabled(0);
1060 std::vector<double> origin;
1061 std::vector<double> inputSpacing;
1062 std::vector<int> inputSize;
1063 std::vector<double> sizeMM;
1064 vtkSmartPointer<vtkMatrix4x4> transformation;
1067 QString inputSizeInBytes;
1068 QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1070 if (mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size() > 1 || playMode == 1) {
1071 playButton->setEnabled(1);
1072 frameRateLabel->setEnabled(1);
1073 frameRateSpinBox->setEnabled(1);
1075 playButton->setEnabled(0);
1076 frameRateLabel->setEnabled(0);
1077 frameRateSpinBox->setEnabled(0);
1083 vvImage::Pointer imageSelected;
1084 if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
1085 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1086 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
1087 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
1088 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
1089 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
1090 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
1091 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
1093 else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "contour") {
1094 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1097 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1100 dimension = imageSelected->GetNumberOfDimensions();
1101 origin.resize(dimension);
1102 inputSpacing.resize(dimension);
1103 inputSize.resize(dimension);
1104 sizeMM.resize(dimension);
1105 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1106 for (int i = 0; i < dimension; i++) {
1107 origin[i] = imageSelected->GetOrigin()[i];
1108 inputSpacing[i] = imageSelected->GetSpacing()[i];
1109 inputSize[i] = imageSelected->GetSize()[i];
1110 sizeMM[i] = inputSize[i]*inputSpacing[i];
1111 NPixel *= inputSize[i];
1113 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1115 QString dim = QString::number(dimension) + " (";
1116 dim += pixelType + ")";
1118 infoPanel->setFileName(image);
1119 infoPanel->setDimension(dim);
1120 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1121 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1122 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1123 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1124 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1125 transformation = imageSelected->GetTransform()->GetMatrix();
1126 infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
1128 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1129 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1130 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1131 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1133 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1134 for (int i = 0; i < 4; i++) {
1135 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1136 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1141 infoPanel->setFileName(image);
1142 infoPanel->setDimension(dim);
1143 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1144 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1145 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1146 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1147 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1149 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1150 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1151 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1152 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1154 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1155 for (int i = 0; i < 4; i++) {
1156 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1157 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1161 WindowLevelChanged();
1163 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
1164 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1165 overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
1166 mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
1167 mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
1169 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1170 overlayPanel->getVFProperty(-1,-1,-1);
1172 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
1173 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1175 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1178 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
1179 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1181 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1185 //------------------------------------------------------------------------------
1187 //------------------------------------------------------------------------------
1188 void vvMainWindow::ShowDocumentation()
1190 documentation->show();
1192 //------------------------------------------------------------------------------
1194 //------------------------------------------------------------------------------
1195 void vvMainWindow::PopupRegisterForm(bool checkCanPush)
1197 vvRegisterForm* registerForm = new vvRegisterForm(QUrl("http://www.creatis.insa-lyon.fr/~dsarrut/vvregister/write.php"), getVVSettingsPath(), getSettingsOptionFormat());
1199 registerForm->show();
1201 if(registerForm->canPush()) {
1202 registerForm->show();
1203 registerForm->acquitPushed();//too bad if there is not internet connection anymore.
1207 //------------------------------------------------------------------------------
1209 //------------------------------------------------------------------------------
1210 void vvMainWindow::ShowHelpDialog()
1212 help_dialog->show();
1214 //------------------------------------------------------------------------------
1216 //------------------------------------------------------------------------------
1217 void vvMainWindow::ChangeViewMode()
1220 if (viewMode == 1) {
1224 splitter_3->setSizes(size);
1225 OSplitter->setSizes(size);
1226 DataTree->setColumnHidden(2,1);
1227 DataTree->setColumnHidden(3,1);
1228 DataTree->setColumnHidden(4,1);
1233 splitter_3->setSizes(size);
1234 OSplitter->setSizes(size);
1235 DataTree->setColumnHidden(2,0);
1236 DataTree->setColumnHidden(3,0);
1237 DataTree->setColumnHidden(4,0);
1239 UpdateRenderWindows();
1241 ** I don't know why but for both resized QVTKWidget we also need to render
1242 ** the associated Slicer to redraw crosses.
1244 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1245 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
1246 mSlicerManagers[i]->GetSlicer(0)->Render();
1247 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
1248 mSlicerManagers[i]->GetSlicer(2)->Render();
1251 //------------------------------------------------------------------------------
1253 //------------------------------------------------------------------------------
1254 QString vvMainWindow::GetSizeInBytes(unsigned long size)
1256 QString result = "";// QString::number(size);
1257 //result += " bytes (";
1258 if (size > 1000000000) {
1260 result += QString::number(size);
1261 result += "Gb";//)";
1262 } else if (size > 1000000) {
1264 result += QString::number(size);
1265 result += "Mb";//)";
1266 } else if (size > 1000) {
1268 result += QString::number(size);
1269 result += "kb";//)";
1273 //------------------------------------------------------------------------------
1275 //------------------------------------------------------------------------------
1276 QString vvMainWindow::Get4x4MatrixDoubleAsString(vtkSmartPointer<vtkMatrix4x4> matrix)
1278 std::ostringstream strmatrix;
1280 for (unsigned int i = 0; i < 4; i++) {
1281 for (unsigned int j = 0; j < 4; j++) {
1282 strmatrix.flags(ios::showpos);
1283 strmatrix.width(10);
1284 strmatrix.precision(3);
1285 strmatrix.setf(ios::fixed,ios::floatfield);
1286 strmatrix.fill(' ');
1287 strmatrix << std::left << matrix->GetElement(i, j);
1288 //strmatrix.width(10);
1291 strmatrix << std::endl;
1293 QString result = strmatrix.str().c_str();
1296 //------------------------------------------------------------------------------
1298 //------------------------------------------------------------------------------
1299 QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble)
1302 for (unsigned int i= 0; i < vectorDouble.size(); i++) {
1305 result += QString::number(vectorDouble[i]);
1309 //------------------------------------------------------------------------------
1311 //------------------------------------------------------------------------------
1312 QString vvMainWindow::GetVectorIntAsString(std::vector<int> vectorInt)
1315 for (unsigned int i= 0; i < vectorInt.size(); i++) {
1318 result += QString::number(vectorInt[i]);
1322 //------------------------------------------------------------------------------
1324 //------------------------------------------------------------------------------
1325 int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item)
1327 QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1328 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1329 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1334 //------------------------------------------------------------------------------
1336 //------------------------------------------------------------------------------
1337 QTreeWidgetItem* vvMainWindow::GetItemFromSlicerManager(vvSlicerManager* sm)
1339 QString id = sm->GetId().c_str();
1340 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1341 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1342 return DataTree->topLevelItem(i);
1346 //------------------------------------------------------------------------------
1348 //------------------------------------------------------------------------------
1349 void vvMainWindow::DisplayChanged(QTreeWidgetItem *clickedItem, int column)
1351 if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
1354 // Get parent information (might be the same item)
1355 int slicerManagerIndex = GetSlicerIndexFromItem(clickedItem);
1356 QTreeWidgetItem* clickedParentItem = DataTree->topLevelItem(slicerManagerIndex);
1357 vvSlicer* clickedSlicer = mSlicerManagers[slicerManagerIndex]->GetSlicer(column-1);
1359 // Go over the complete item tree (only 2 levels, parents and children)
1360 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1361 // Trick to avoid redoing twice the job for a key (sr)
1362 mSlicerManagers[i]->GetSlicer(column-1)->GetRenderWindow()->GetInteractor()->SetKeySym("Crap");
1364 QTreeWidgetItem* currentParentItem = DataTree->topLevelItem(i);
1365 if(currentParentItem != clickedParentItem) {
1366 // Not the branch of the clicked item, uncheck all
1369 currentParentItem->setData(column,Qt::CheckStateRole, 0);
1370 mSlicerManagers[i]->UpdateSlicer(column-1, false);
1373 for (int iChild = 0; iChild < currentParentItem->childCount(); iChild++) {
1374 currentParentItem->child(iChild)->setData(column,Qt::CheckStateRole, 0);
1378 // Branch of the clicked one: get check status from actor visibility in slicer
1379 // and toggle the clicked one
1382 bool vis = clickedSlicer->GetActorVisibility("image", 0);
1383 bool draw = clickedSlicer->GetRenderer()->GetDraw();
1385 // Update slicer (after getting visibility)
1386 mSlicerManagers[slicerManagerIndex]->UpdateSlicer(column-1, true);
1387 mSlicerManagers[slicerManagerIndex]->UpdateInfoOnCursorPosition(column-1);
1388 DisplaySliders(slicerManagerIndex, column-1);
1389 if(clickedParentItem == clickedItem) {
1391 vis = !draw || !vis;
1393 clickedSlicer->SetActorVisibility("image", 0, vis);
1394 clickedParentItem->setData(column, Qt::CheckStateRole, vis?2:0);
1397 std::map<std::string, int> actorTypeCounts;
1398 for (int iChild = 0; iChild < clickedParentItem->childCount(); iChild++) {
1399 QTreeWidgetItem* currentChildItem = clickedParentItem->child(iChild);
1400 std::string actorType = currentChildItem->data(1,Qt::UserRole).toString().toStdString();
1401 vis = clickedSlicer->GetActorVisibility(actorType, actorTypeCounts[actorType]);
1402 if(currentChildItem == clickedItem) {
1403 // Toggle or force visibility if it was not on this branch so far
1404 vis = !draw || !vis;
1405 clickedSlicer->SetActorVisibility(actorType, actorTypeCounts[actorType], vis);
1407 currentChildItem->setData(column, Qt::CheckStateRole, vis?2:0);
1408 actorTypeCounts[actorType]++;
1413 clickedSlicer->Render();
1415 //------------------------------------------------------------------------------
1417 void vvMainWindow::InitSlicers()
1419 if (mSlicerManagers.size()) {
1420 mSlicerManagers.back()->GenerateDefaultLookupTable();
1422 mSlicerManagers.back()->SetSlicerWindow(0,NOViewWidget->GetRenderWindow());
1423 mSlicerManagers.back()->SetSlicerWindow(1,NEViewWidget->GetRenderWindow());
1424 mSlicerManagers.back()->SetSlicerWindow(2,SOViewWidget->GetRenderWindow());
1425 mSlicerManagers.back()->SetSlicerWindow(3,SEViewWidget->GetRenderWindow());
1429 //------------------------------------------------------------------------------
1430 void vvMainWindow::InitDisplay()
1432 if (mSlicerManagers.size()) {
1433 //BE CAREFUL : this is absolutely necessary to set the interactor style
1434 //in order to have the same style instanciation for all SlicerManagers in
1436 for (int j = 0; j < 4; j++) {
1437 vvInteractorStyleNavigator* style = vvInteractorStyleNavigator::New();
1438 style->SetAutoAdjustCameraClippingRange(1);
1439 bool AlreadySelected = false;
1440 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1441 mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
1443 //select the image only if previous are not selected
1444 if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1) {
1445 mSlicerManagers[i]->UpdateSlicer(j,1);
1446 AlreadySelected = true;
1447 } else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected) {
1448 if (DataTree->selectedItems().size() == 0)
1449 DataTree->topLevelItem(i)->setSelected(1);
1450 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
1451 mSlicerManagers[i]->UpdateSlicer(j,1);
1452 DisplaySliders(i,j);
1454 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,0);
1455 mSlicerManagers[i]->UpdateSlicer(j,0);
1462 //------------------------------------------------------------------------------
1464 //------------------------------------------------------------------------------
1465 void vvMainWindow::DisplaySliders(int slicer, int window)
1468 mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
1469 int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
1473 tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
1474 int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetTSlice();
1475 bool showHorizontal = false;
1476 bool showVertical = false;
1477 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1478 || (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 2
1479 && mSlicerManagers[slicer]->GetType() != vvImageReader::IMAGEWITHTIME
1480 && mSlicerManagers[slicer]->GetType() != vvImageReader::MERGEDWITHTIME))
1481 showVertical = true;
1482 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1483 || mSlicerManagers[slicer]->GetType() == vvImageReader::IMAGEWITHTIME
1484 || mSlicerManagers[slicer]->GetType() == vvImageReader::MERGEDWITHTIME)
1485 showHorizontal = true;
1488 verticalSliders[window]->show();
1490 verticalSliders[window]->hide();
1491 verticalSliders[window]->setRange(range[0],range[1]);
1492 verticalSliders[window]->setValue(position);
1495 horizontalSliders[window]->show();
1497 horizontalSliders[window]->hide();
1498 horizontalSliders[window]->setRange(tRange[0],tRange[1]);
1499 horizontalSliders[window]->setValue(tPosition);
1501 //------------------------------------------------------------------------------
1503 //------------------------------------------------------------------------------
1504 void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column)
1506 int index = GetSlicerIndexFromItem(item);
1508 if (DataTree->topLevelItem(index) != item) {
1509 QString warning = "Do you really want to close the overlay : ";
1510 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1511 QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
1513 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1514 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1515 if (msgBox.exec() == QMessageBox::AcceptRole) {
1516 std::string overlay_type=item->data(1,Qt::UserRole).toString().toStdString();
1517 int overlay_index=0;
1518 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++) {
1519 if (DataTree->topLevelItem(index)->\
1520 child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1522 if (DataTree->topLevelItem(index)->child(child) == item) break;
1524 mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
1525 mSlicerManagers[index]->SetColorMap(0);
1526 DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
1527 mSlicerManagers[index]->Render();
1529 } else if (DataTree->topLevelItemCount() <= 1) {
1530 QString warning = "Do you really want to close the image : ";
1531 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1532 warning += "\nThis is the last image, you're about to close vv !!!";
1533 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1535 msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
1536 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1537 if (msgBox.exec() == QMessageBox::AcceptRole) {
1541 QString warning = "Do you really want to close the image : ";
1542 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1543 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1545 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1546 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1547 if (msgBox.exec() == QMessageBox::AcceptRole) {
1549 // Tell tools that we close an image
1550 emit AnImageIsBeingClosed(mSlicerManagers[index]);
1552 std::vector<vvSlicerManager*>::iterator Manageriter = mSlicerManagers.begin();
1553 DataTree->takeTopLevelItem(index);
1554 for (int i = 0; i < index; i++) {
1557 linkPanel->removeImage(index);
1558 mSlicerManagers[index]->RemoveActors();
1559 delete mSlicerManagers[index];
1560 mSlicerManagers.erase(Manageriter);
1568 //------------------------------------------------------------------------------
1570 //------------------------------------------------------------------------------
1571 void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column)
1573 // int index = GetSlicerIndexFromItem(item);
1574 // QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1575 // if (item->data(1,Qt::UserRole).toString() == "vector")
1576 // mSlicerManagers[index]->ReloadVF();
1578 // mSlicerManagers[index]->Reload();
1580 // QApplication::restoreOverrideCursor();
1581 int index = GetSlicerIndexFromItem(item);
1582 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1583 QString role=item->data(1,Qt::UserRole).toString();
1584 if ( role == "vector"){
1585 mSlicerManagers[index]->ReloadVF();
1587 else if (role == "overlay"){
1588 mSlicerManagers[index]->ReloadOverlay();
1590 else if (role == "fusion"){
1591 mSlicerManagers[index]->ReloadFusion();
1594 mSlicerManagers[index]->Reload();
1596 // Update view and info
1598 mSlicerManagers[index]->Render();
1599 QApplication::restoreOverrideCursor();
1601 //------------------------------------------------------------------------------
1603 //------------------------------------------------------------------------------
1604 void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value)
1606 infoPanel->setCurrentInfo(visibility,x,y,z,X,Y,Z,value);
1608 //------------------------------------------------------------------------------
1610 //------------------------------------------------------------------------------
1611 void vvMainWindow::VectorChanged(int visibility,double x, double y, double z, double value)
1613 overlayPanel->getCurrentVectorInfo(visibility,x,y,z,value);
1615 //------------------------------------------------------------------------------
1617 //------------------------------------------------------------------------------
1618 void vvMainWindow::OverlayChanged(int visibility, double valueOver, double valueRef)
1620 overlayPanel->getCurrentOverlayInfo(visibility,valueOver, valueRef);
1622 //------------------------------------------------------------------------------
1624 //------------------------------------------------------------------------------
1625 void vvMainWindow::FusionChanged(int visibility, double value)
1627 overlayPanel->getCurrentFusionInfo(visibility,value);
1629 //------------------------------------------------------------------------------
1631 //------------------------------------------------------------------------------
1632 void vvMainWindow::WindowLevelChanged()
1635 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1636 if(index==-1) return;
1637 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1638 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1639 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1640 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1643 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay())
1644 overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor(),
1645 mSlicerManagers[index]->GetLinkOverlayWindowLevel(),
1646 mSlicerManagers[index]->GetOverlayColorWindow(),
1647 mSlicerManagers[index]->GetOverlayColorLevel());
1649 overlayPanel->getOverlayProperty(-1,0,0.,0.);
1652 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion())
1653 overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
1654 mSlicerManagers[index]->GetFusionThresholdOpacity(),
1655 mSlicerManagers[index]->GetFusionColorMap(),
1656 mSlicerManagers[index]->GetFusionWindow(),
1657 mSlicerManagers[index]->GetFusionLevel());
1659 overlayPanel->getFusionProperty(-1, -1, -1, -1, -1);
1661 //------------------------------------------------------------------------------
1663 //------------------------------------------------------------------------------
1664 void vvMainWindow::WindowLevelEdited()
1666 presetComboBox->setCurrentIndex(6);
1667 UpdateWindowLevel();
1669 //------------------------------------------------------------------------------
1671 //------------------------------------------------------------------------------
1672 void vvMainWindow::SetWindowLevel(double w, double l)
1674 windowSpinBox->setValue(w);
1675 levelSpinBox->setValue(l);
1676 presetComboBox->setCurrentIndex(6);
1677 colorMapComboBox->setCurrentIndex(0);
1678 UpdateWindowLevel();
1680 //------------------------------------------------------------------------------
1682 //------------------------------------------------------------------------------
1683 void vvMainWindow::UpdateWindowLevel()
1685 if (DataTree->selectedItems().size()) {
1686 if (presetComboBox->currentIndex() == 7) //For ventilation
1687 colorMapComboBox->setCurrentIndex(5);
1688 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1689 mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
1690 mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
1691 mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
1692 mSlicerManagers[index]->Render();
1693 WindowLevelChanged();
1696 //------------------------------------------------------------------------------
1698 //------------------------------------------------------------------------------
1699 void vvMainWindow::UpdateColorMap()
1701 if (DataTree->selectedItems().size()) {
1702 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1703 mSlicerManagers[index]->SetColorMap(colorMapComboBox->currentIndex());
1704 mSlicerManagers[index]->Render();
1707 //------------------------------------------------------------------------------
1708 void vvMainWindow::SwitchWindowLevel()
1710 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1711 int window = mSlicerManagers[index]->GetColorWindow();
1712 presetComboBox->setCurrentIndex(6);
1713 windowSpinBox->setValue(-window);
1714 UpdateWindowLevel();
1716 //------------------------------------------------------------------------------
1718 //------------------------------------------------------------------------------
1719 void vvMainWindow::ApplyWindowLevelToAllImages()
1721 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1722 if(index==-1) return;
1723 double window = mSlicerManagers[index]->GetColorWindow();
1724 double level = mSlicerManagers[index]->GetColorLevel();
1726 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1727 if (mSlicerManagers[i] == NULL)
1729 mSlicerManagers[i]->SetColorWindow(window);
1730 mSlicerManagers[i]->SetColorLevel(level);
1731 mSlicerManagers[i]->SetPreset(6);
1732 mSlicerManagers[i]->Render();
1735 //------------------------------------------------------------------------------
1737 //------------------------------------------------------------------------------
1738 void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
1740 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1741 if (mSlicerManagers[i]->GetId() == id) {
1742 //mSlicerManagers[i]->SetTSlice(temps);
1743 mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
1744 mSlicerManagers[i]->UpdateViews(0,slicer);
1749 //------------------------------------------------------------------------------
1751 //------------------------------------------------------------------------------
1752 void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm, vvSlicer* refSlicer)
1754 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1755 if (id == mSlicerManagers[i]->GetId()) {
1756 mSlicerManagers[i]->UpdateLinkedNavigation(refSlicer);
1760 //------------------------------------------------------------------------------
1762 //------------------------------------------------------------------------------
1763 void vvMainWindow::ShowContextMenu(QPoint point)
1765 if (!DataTree->selectedItems().size()) {
1766 contextActions[1]->setEnabled(0);
1767 contextActions[2]->setEnabled(0);
1768 contextActions[3]->setEnabled(0);
1769 contextActions[4]->setEnabled(0);
1770 contextActions[5]->setEnabled(0);
1771 contextActions[6]->setEnabled(0);
1773 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1774 contextActions[1]->setEnabled(1);
1775 contextActions[2]->setEnabled(
1776 DataTree->itemWidget(DataTree->selectedItems()[0],
1777 COLUMN_RELOAD_IMAGE)->isEnabled());
1778 contextActions[3]->setEnabled(1);
1779 contextActions[5]->setEnabled(1);
1780 contextActions[6]->setEnabled(1);
1782 if (mSlicerManagers[index]->GetDimension() < 3)
1783 contextActions[4]->setEnabled(0);
1785 contextActions[4]->setEnabled(1);
1787 contextMenu.exec(QCursor::pos());
1789 //------------------------------------------------------------------------------
1791 //------------------------------------------------------------------------------
1792 void vvMainWindow::CloseImage()
1794 CloseImage(DataTree->selectedItems()[0],0);
1796 //------------------------------------------------------------------------------
1798 //------------------------------------------------------------------------------
1799 void vvMainWindow::ReloadImage()
1801 ReloadImage(DataTree->selectedItems()[0],0);
1803 //------------------------------------------------------------------------------
1805 //------------------------------------------------------------------------------
1806 void vvMainWindow::SelectOverlayImage()
1808 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1810 //check if one overlay image is added
1811 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1812 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay") {
1813 QString error = "Cannot add more than one compared image\n";
1814 error += "Please remove first ";
1815 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1816 QMessageBox::information(this,tr("Problem adding compared image !"),error);
1820 QString Extensions = EXTENSIONS;
1821 Extensions += ";;All Files (*)";
1822 QString file = QFileDialog::getOpenFileName(this,tr("Load Overlay image"),mInputPathName,Extensions);
1823 if (!file.isEmpty())
1824 AddOverlayImage(index,file);
1826 //------------------------------------------------------------------------------
1828 //------------------------------------------------------------------------------
1829 void vvMainWindow::AddOverlayImage(int index, QString file)
1831 if (QFile::exists(file))
1833 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1834 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1835 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1836 reader->SetFileName(file.toStdString().c_str());
1837 reader->ReadImageInformation();
1838 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1839 int dimension = reader->GetNumberOfDimensions();
1840 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1841 vvProgressDialog progress("Opening " + file.toStdString());
1842 qApp->processEvents();
1844 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1845 if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component)) {
1846 //create an item in the tree with good settings
1847 QTreeWidgetItem *item = new QTreeWidgetItem();
1848 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1849 item->setData(1,Qt::UserRole,tr("overlay"));
1850 QFileInfo fileinfo(file); //Do not show the path
1851 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
1852 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("overlay").c_str());
1853 qApp->processEvents();
1855 for (int j = 1; j <= 4; j++) {
1856 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1859 //Create the buttons for reload and close
1860 qApp->processEvents();
1861 QTreePushButton* cButton = new QTreePushButton;
1862 cButton->setItem(item);
1863 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1864 cButton->setToolTip(tr("close image"));
1865 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1866 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1867 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1869 QTreePushButton* rButton = new QTreePushButton;
1870 rButton->setItem(item);
1871 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1872 rButton->setToolTip(tr("reload image"));
1873 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1874 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1875 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1877 DataTree->topLevelItem(index)->setExpanded(1);
1878 DataTree->topLevelItem(index)->addChild(item);
1879 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1880 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1882 //set the id of the image
1883 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1884 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1886 qApp->processEvents();
1888 QApplication::restoreOverrideCursor();
1890 QApplication::restoreOverrideCursor();
1891 QString error = "Cannot import the new image.\n";
1892 error += mSlicerManagers[index]->GetLastError().c_str();
1893 QMessageBox::information(this,tr("Problem reading image !"),error);
1895 WindowLevelChanged();
1898 QMessageBox::information(this,tr("Problem reading Overlay !"),"File doesn't exist!");
1900 //------------------------------------------------------------------------------
1903 //------------------------------------------------------------------------------
1904 void vvMainWindow::AddROI(int index, QString file)
1907 // Get slice manager
1911 vvImageReader * mReader = new vvImageReader;
1912 mReader->SetInputFilename(filename.toStdString());
1913 mReader->Update(IMAGE);
1914 if (mReader->GetLastError().size() != 0) {
1915 std::cerr << "Error while reading " << filename.toStdString() << std::endl;
1916 QString error = "Cannot open file \n";
1917 error += mReader->GetLastError().c_str();
1918 QMessageBox::information(this,tr("Reading problem"),error);
1922 vvImage::Pointer roi = mReader->GetOutput();
1924 // Create roi in new tool
1925 vvToolStructureSetManager::AddImage(mCurrentSlicerManager, roi);
1928 //------------------------------------------------------------------------------
1930 //------------------------------------------------------------------------------
1931 void vvMainWindow::SelectFusionImage()
1933 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1935 //check if one fusion image is added
1936 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1937 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") {
1938 QString error = "Cannot add more than one fusion image\n";
1939 error += "Please remove first ";
1940 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1941 QMessageBox::information(this,tr("Problem adding fusion image !"),error);
1945 QString Extensions = EXTENSIONS;
1946 Extensions += ";;All Files (*)";
1947 QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
1948 if (!file.isEmpty())
1949 AddFusionImage(index,file);
1951 //------------------------------------------------------------------------------
1953 //------------------------------------------------------------------------------
1954 void vvMainWindow::ResetTransformationToIdentity()
1956 std::string actorType = DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString().toStdString();
1957 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1958 mSlicerManagers[index]->ResetTransformationToIdentity(actorType);
1961 //------------------------------------------------------------------------------
1963 //------------------------------------------------------------------------------
1964 void vvMainWindow::AddFusionImage(int index, QString file)
1966 if (QFile::exists(file))
1968 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1969 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1970 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1971 reader->SetFileName(file.toStdString().c_str());
1972 reader->ReadImageInformation();
1973 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1975 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1976 vvProgressDialog progress("Opening fusion");
1977 qApp->processEvents();
1979 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1980 if (mSlicerManagers[index]->SetFusion(file.toStdString(),
1981 reader->GetNumberOfDimensions(), component)) {
1982 //create an item in the tree with good settings
1983 QTreeWidgetItem *item = new QTreeWidgetItem();
1984 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1985 item->setData(1,Qt::UserRole,tr("fusion"));
1986 QFileInfo fileinfo(filename.c_str()); //Do not show the path
1987 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
1988 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusion").c_str());
1989 qApp->processEvents();
1991 for (int j = 1; j <= 4; j++) {
1992 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1995 //Create the buttons for reload and close
1996 qApp->processEvents();
1997 QTreePushButton* cButton = new QTreePushButton;
1998 cButton->setItem(item);
1999 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2000 cButton->setToolTip(tr("close image"));
2001 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2002 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2003 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2005 QTreePushButton* rButton = new QTreePushButton;
2006 rButton->setItem(item);
2007 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2008 rButton->setToolTip(tr("reload image"));
2009 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2010 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2011 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2013 DataTree->topLevelItem(index)->setExpanded(1);
2014 DataTree->topLevelItem(index)->addChild(item);
2015 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2016 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2018 //set the id of the image
2019 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2020 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2022 qApp->processEvents();
2024 QApplication::restoreOverrideCursor();
2026 QApplication::restoreOverrideCursor();
2027 QString error = "Cannot import the new image.\n";
2028 error += mSlicerManagers[index]->GetLastError().c_str();
2029 QMessageBox::information(this,tr("Problem reading image !"),error);
2032 QString error = "Cannot import the new image.\n";
2033 QMessageBox::information(this,tr("Problem reading image !"),error);
2037 QMessageBox::information(this,tr("Problem reading Fusion !"),"File doesn't exist!");
2039 //------------------------------------------------------------------------------
2042 //------------------------------------------------------------------------------
2043 void vvMainWindow::OpenField()
2045 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2046 //check if a vector field has already been added
2047 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
2048 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector") {
2049 QString error = "Cannot add more than one vector field\n";
2050 error += "Please remove first ";
2051 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
2052 QMessageBox::information(this,tr("Problem adding vector field!"),error);
2056 QString Extensions = "Images ( *.mhd)";
2057 Extensions += ";;Images ( *.mha)";
2058 Extensions += ";;Images ( *.vf)";
2059 QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
2060 if (!file.isEmpty())
2061 AddField(file,index);
2063 //------------------------------------------------------------------------------
2066 //------------------------------------------------------------------------------
2067 void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
2069 //create an item in the tree with good settings
2070 QTreeWidgetItem *item = new QTreeWidgetItem();
2071 item->setData(0,Qt::UserRole,filename.toStdString().c_str());
2072 item->setData(1,Qt::UserRole,tr("vector"));
2073 QFileInfo fileinfo(filename); //Do not show the path
2074 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
2075 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("vector").c_str());
2076 qApp->processEvents();
2078 for (int j = 1; j <= 4; j++) {
2079 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2082 //Create the buttons for reload and close
2083 qApp->processEvents();
2084 QTreePushButton* cButton = new QTreePushButton;
2085 cButton->setItem(item);
2086 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2087 cButton->setToolTip(tr("close vector field"));
2088 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2089 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2090 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2092 QTreePushButton* rButton = new QTreePushButton;
2093 rButton->setItem(item);
2094 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2095 rButton->setToolTip(tr("reload vector field"));
2096 rButton->setEnabled(from_disk);
2097 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2098 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2099 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2101 DataTree->topLevelItem(index)->setExpanded(1);
2102 DataTree->topLevelItem(index)->addChild(item);
2103 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2104 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2106 //set the id of the image
2107 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2108 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2110 qApp->processEvents();
2112 QApplication::restoreOverrideCursor();
2114 //------------------------------------------------------------------------------
2117 //------------------------------------------------------------------------------
2118 void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
2120 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2121 vvSlicerManager* imageManager = mSlicerManagers[index];
2122 if (imageManager->SetVF(vf,file.toStdString())) {
2123 AddFieldEntry(file,index,false);
2125 QString error = "Cannot import the vector field for this image.\n";
2126 error += imageManager->GetLastError().c_str();
2127 QMessageBox::information(this,tr("Problem reading VF !"),error);
2129 QApplication::restoreOverrideCursor();
2131 //------------------------------------------------------------------------------
2134 //------------------------------------------------------------------------------
2135 void vvMainWindow::AddField(QString file,int index)
2137 if (QFile::exists(file)) {
2138 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2140 //init the progress events
2141 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2142 vvProgressDialog progress("Opening " + file.toStdString());
2143 qApp->processEvents();
2145 //read the vector and put it in the current mSlicerManager
2146 vvSlicerManager* imageManager = mSlicerManagers[index];
2147 qApp->processEvents();
2149 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2150 if (imageManager->SetVF(file.toStdString())) {
2151 imageManager->Render();
2152 AddFieldEntry(file,index,true);
2154 QApplication::restoreOverrideCursor();
2155 QString error = "Cannot import the vector field for this image.\n";
2156 error += imageManager->GetLastError().c_str();
2157 QMessageBox::information(this,tr("Problem reading VF !"),error);
2160 QMessageBox::information(this,tr("Problem reading VF !"),"File doesn't exist!");
2163 //------------------------------------------------------------------------------
2166 //------------------------------------------------------------------------------
2167 void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width, double r, double g, double b)
2169 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2170 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
2171 for (int i = 0; i < 4; i++) {
2172 mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
2173 mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
2174 mSlicerManagers[index]->GetSlicer(i)->SetVFWidth(width);
2175 mSlicerManagers[index]->GetSlicer(i)->SetVFColor(r,g,b);
2177 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
2179 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(0);
2183 //------------------------------------------------------------------------------
2186 //------------------------------------------------------------------------------
2187 void vvMainWindow::SetOverlayProperty(int color, int linked, double window, double level)
2189 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2190 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
2191 mSlicerManagers[index]->SetOverlayColor(color);
2192 mSlicerManagers[index]->SetColorMap(0);
2193 mSlicerManagers[index]->SetLinkOverlayWindowLevel(linked);
2194 mSlicerManagers[index]->SetOverlayColorWindow(window);
2195 mSlicerManagers[index]->SetOverlayColorLevel(level);
2196 mSlicerManagers[index]->Render();
2199 //------------------------------------------------------------------------------
2201 //------------------------------------------------------------------------------
2202 void vvMainWindow::SetFusionProperty(int opacity, int thresOpacity, int colormap,double window, double level)
2204 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2205 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
2206 mSlicerManagers[index]->SetFusionColorMap(colormap);
2207 mSlicerManagers[index]->SetFusionOpacity(opacity);
2208 mSlicerManagers[index]->SetFusionThresholdOpacity(thresOpacity);
2209 mSlicerManagers[index]->SetFusionWindow(window);
2210 mSlicerManagers[index]->SetFusionLevel(level);
2211 mSlicerManagers[index]->SetColorMap(0);
2212 mSlicerManagers[index]->Render();
2215 //------------------------------------------------------------------------------
2217 //------------------------------------------------------------------------------
2218 void vvMainWindow::SaveAs()
2220 if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
2221 QMessageBox::warning(this,tr("Unsupported type"),tr("Sorry, saving a vector field is unsupported for the moment"));
2225 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2226 int dimension = mSlicerManagers[index]->GetDimension();
2227 QStringList OutputListeFormat;
2228 OutputListeFormat.clear();
2229 if (dimension == 1) {
2230 OutputListeFormat.push_back(".mhd");
2231 OutputListeFormat.push_back(".mha");
2233 if (dimension == 2) {
2234 OutputListeFormat.push_back(".bmp");
2235 OutputListeFormat.push_back(".png");
2236 OutputListeFormat.push_back(".jpeg");
2237 OutputListeFormat.push_back(".tif");
2238 OutputListeFormat.push_back(".mhd");
2239 OutputListeFormat.push_back(".mha");
2240 OutputListeFormat.push_back(".hdr");
2241 OutputListeFormat.push_back(".vox");
2242 } else if (dimension == 3) {
2243 OutputListeFormat.push_back(".mhd");
2244 OutputListeFormat.push_back(".mha");
2245 OutputListeFormat.push_back(".hdr");
2246 OutputListeFormat.push_back(".vox");
2247 } else if (dimension == 4) {
2248 OutputListeFormat.push_back(".mhd");
2249 OutputListeFormat.push_back(".mha");
2251 QString Extensions = "AllFiles(*.*)";
2252 for (int i = 0; i < OutputListeFormat.count(); i++) {
2253 Extensions += ";;Images ( *";
2254 Extensions += OutputListeFormat[i];
2257 QString fileName = QFileDialog::getSaveFileName(this,
2259 mSlicerManagers[index]->GetFileName().c_str(),
2261 if (!fileName.isEmpty()) {
2262 std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
2263 if (OutputListeFormat.contains(
2264 fileformat.c_str())) {
2265 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2266 std::string action = "Saving";
2267 vvProgressDialog progress("Saving "+fileName.toStdString());
2268 qApp->processEvents();
2269 vvImageWriter::Pointer writer = vvImageWriter::New();
2270 writer->SetOutputFileName(fileName.toStdString());
2271 writer->SetInput(mSlicerManagers[index]->GetImage());
2273 QApplication::restoreOverrideCursor();
2274 if (writer->GetLastError().size()) {
2275 QString error = "Saving did not succeed\n";
2276 error += writer->GetLastError().c_str();
2277 QMessageBox::information(this,tr("Saving Problem"),error);
2281 QString error = fileformat.c_str();
2282 if (error.isEmpty())
2283 error += "no file format specified !";
2285 error += " format unknown !!!\n";
2286 QMessageBox::information(this,tr("Saving Problem"),error);
2291 //------------------------------------------------------------------------------
2293 //------------------------------------------------------------------------------
2294 void vvMainWindow::SaveCurrentState()
2296 QString Extensions = "XML Files(*.xml)";
2297 QString fileName = QFileDialog::getSaveFileName(this,
2298 tr("Save Current Window State"),
2302 SaveCurrentStateAs(fileName.toStdString());
2304 //------------------------------------------------------------------------------
2306 //------------------------------------------------------------------------------
2307 void vvMainWindow::SaveCurrentStateAs(const std::string& stateFile)
2309 vvSaveState save_state;
2310 save_state.Run(this, stateFile);
2312 std::cout << "void vvMainWindow::SaveCurrentState()" << std::endl;
2315 //------------------------------------------------------------------------------
2316 void vvMainWindow::ReadSavedState()
2318 QString Extensions = "XML Files(*.xml)";
2319 QString fileName = QFileDialog::getOpenFileName(this,
2320 tr("Load Window State"),
2324 ReadSavedStateFile(fileName.toStdString());
2326 //------------------------------------------------------------------------------
2328 //------------------------------------------------------------------------------
2329 void vvMainWindow::ReadSavedStateFile(const std::string& stateFile)
2331 vvReadState read_state;
2332 read_state.Run(this, stateFile);
2334 //------------------------------------------------------------------------------
2336 //------------------------------------------------------------------------------
2337 void vvMainWindow::LinkAllImages()
2339 linkPanel->linkAll();
2342 //------------------------------------------------------------------------------
2343 void vvMainWindow::AddLink(QString image1,QString image2)
2345 unsigned int sm1 = 0;
2346 unsigned int sm2 = 0;
2348 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2349 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2350 mSlicerManagers[i]->AddLink(image2.toStdString());
2353 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2354 mSlicerManagers[i]->AddLink(image1.toStdString());
2359 if (linkPanel->isLinkAll()) {
2360 emit UpdateLinkedNavigation(mSlicerManagers[sm1]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2361 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2363 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[sm1], mSlicerManagers[sm1]->GetSlicer(0));
2367 //------------------------------------------------------------------------------
2370 //------------------------------------------------------------------------------
2371 void vvMainWindow::RemoveLink(QString image1,QString image2)
2373 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2374 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2375 mSlicerManagers[i]->RemoveLink(image2.toStdString());
2377 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2378 mSlicerManagers[i]->RemoveLink(image1.toStdString());
2382 //------------------------------------------------------------------------------
2384 //------------------------------------------------------------------------------
2385 void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset)
2387 if(mSlicerManagers.size()==1)
2391 while(sm != mSlicerManagers[index])
2393 index = (index+offset+mSlicerManagers.size()) % mSlicerManagers.size();
2395 QTreeWidgetItem* item = GetItemFromSlicerManager(mSlicerManagers[index]);
2396 item->setData(slicer+1,Qt::CheckStateRole,2); //change checkbox
2397 CurrentImageChanged(mSlicerManagers[index]->GetId()); //select new image
2398 DisplayChanged(item,slicer+1);
2400 //------------------------------------------------------------------------------
2402 void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
2404 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2405 if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
2406 for (int j = 0; j < 4; j++) {
2407 mSlicerManagers[i]->SetTSliceInSlicer(value,j);
2408 //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
2409 //UpdateTSlice(j,value);
2411 mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
2416 //------------------------------------------------------------------------------
2419 //------------------------------------------------------------------------------
2420 void vvMainWindow::NOHorizontalSliderMoved()
2422 // if (mCurrentTime == NOHorizontalSlider->value()) return;
2423 HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
2424 // mCurrentTime = NOHorizontalSlider->value();
2426 //------------------------------------------------------------------------------
2429 //------------------------------------------------------------------------------
2430 void vvMainWindow::NEHorizontalSliderMoved()
2432 // if (mCurrentTime == NEHorizontalSlider->value()) return;
2433 HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
2434 // mCurrentTime = NEHorizontalSlider->value();
2436 //------------------------------------------------------------------------------
2439 //------------------------------------------------------------------------------
2440 void vvMainWindow::SOHorizontalSliderMoved()
2442 // if (mCurrentTime == SOHorizontalSlider->value()) return;
2443 HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
2444 // mCurrentTime = SOHorizontalSlider->value();
2446 //------------------------------------------------------------------------------
2449 //------------------------------------------------------------------------------
2450 void vvMainWindow::SEHorizontalSliderMoved()
2452 // if (mCurrentTime == SEHorizontalSlider->value()) return;
2453 HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
2454 // mCurrentTime = SEHorizontalSlider->value();
2456 //------------------------------------------------------------------------------
2458 //------------------------------------------------------------------------------
2459 void vvMainWindow::NOVerticalSliderChanged()
2461 static int value=-1;
2462 if (value == NOVerticalSlider->value()) return;
2463 else value = NOVerticalSlider->value();
2464 // int value = NOVerticalSlider->value();
2465 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2466 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2467 if (mSlicerManagers[i]->GetSlicer(0)->GetSlice() != value) {
2468 mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
2469 mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
2471 // If nor Update/Render -> slider not work
2472 // only render = ok navigation, but for contour Update needed but slower ?
2474 mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
2475 //mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2481 //------------------------------------------------------------------------------
2484 //------------------------------------------------------------------------------
2485 void vvMainWindow::NEVerticalSliderChanged()
2487 static int value=-1;
2488 if (value == NEVerticalSlider->value()) return;
2489 else value = NEVerticalSlider->value();
2490 // int value = NEVerticalSlider->value();
2491 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2492 if (DataTree->topLevelItem(i)->data(COLUMN_UR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2493 if (mSlicerManagers[i]->GetSlicer(1)->GetSlice() != value) {
2494 mSlicerManagers[i]->GetSlicer(1)->SetSlice(value);
2495 mSlicerManagers[i]->VerticalSliderHasChanged(1, value);
2496 mSlicerManagers[i]->UpdateSlice(1);
2497 //mSlicerManagers[i]->GetSlicer(1)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2503 //------------------------------------------------------------------------------
2506 //------------------------------------------------------------------------------
2507 void vvMainWindow::SOVerticalSliderChanged()
2509 static int value=-1;
2510 if (value == SOVerticalSlider->value()) return;
2511 else value = SOVerticalSlider->value();
2512 //int value = SOVerticalSlider->value();
2513 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2514 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2515 if (mSlicerManagers[i]->GetSlicer(2)->GetSlice() != value) {
2516 mSlicerManagers[i]->GetSlicer(2)->SetSlice(value);
2517 mSlicerManagers[i]->VerticalSliderHasChanged(2, value);
2518 mSlicerManagers[i]->UpdateSlice(2);
2519 //mSlicerManagers[i]->GetSlicer(2)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2521 // else { DD("avoid SOVerticalSlider slicer update"); }
2526 //------------------------------------------------------------------------------
2529 //------------------------------------------------------------------------------
2530 void vvMainWindow::SEVerticalSliderChanged()
2532 static int value=-1;
2533 if (value == SEVerticalSlider->value()) return;
2534 else value = SEVerticalSlider->value();
2535 // int value = SEVerticalSlider->value();
2536 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2537 if (DataTree->topLevelItem(i)->data(COLUMN_DR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2538 if (mSlicerManagers[i]->GetSlicer(3)->GetSlice() != value) {
2539 mSlicerManagers[i]->GetSlicer(3)->SetSlice(value);
2540 mSlicerManagers[i]->VerticalSliderHasChanged(3, value);
2541 mSlicerManagers[i]->UpdateSlice(3);
2542 //mSlicerManagers[i]->GetSlicer(3)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2548 //------------------------------------------------------------------------------
2551 //------------------------------------------------------------------------------
2552 void vvMainWindow::UpdateSlice(int slicer, int slice)
2554 // DD("vvMainWindow::UpdateSlice");
2558 // if (slice != NOVerticalSlider->value())
2559 NOVerticalSlider->setValue(slice);
2562 NEVerticalSlider->setValue(slice);
2565 SOVerticalSlider->setValue(slice);
2568 SEVerticalSlider->setValue(slice);
2572 // DD("vvMainWindow:UpdateSlice END");
2574 //------------------------------------------------------------------------------
2577 //------------------------------------------------------------------------------
2578 void vvMainWindow::UpdateTSlice(int slicer, int slice)
2582 NOHorizontalSlider->setValue(slice);
2585 NEHorizontalSlider->setValue(slice);
2588 SOHorizontalSlider->setValue(slice);
2591 SEHorizontalSlider->setValue(slice);
2595 //------------------------------------------------------------------------------
2598 //------------------------------------------------------------------------------
2599 void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax)
2601 int position = int((min+max)/2);
2603 NOVerticalSlider->setValue(position);
2604 NOVerticalSlider->setRange(min,max);
2605 NOHorizontalSlider->setRange(tmin,tmax);
2606 } else if (slicer == 1) {
2607 NEVerticalSlider->setValue(position);
2608 NEVerticalSlider->setRange(min,max);
2609 NEHorizontalSlider->setRange(tmin,tmax);
2610 } else if (slicer == 2) {
2611 SOVerticalSlider->setValue(position);
2612 SOVerticalSlider->setRange(min,max);
2613 SOHorizontalSlider->setRange(tmin,tmax);
2614 } else if (slicer == 3) {
2615 SEVerticalSlider->setValue(position);
2616 SEVerticalSlider->setRange(min,max);
2617 SEHorizontalSlider->setRange(tmin,tmax);
2620 //------------------------------------------------------------------------------
2623 //------------------------------------------------------------------------------
2624 void vvMainWindow::SaveNOScreenshot()
2626 SaveScreenshot(NOViewWidget);
2628 //------------------------------------------------------------------------------
2631 //------------------------------------------------------------------------------
2632 void vvMainWindow::SaveNEScreenshot()
2634 SaveScreenshot(NEViewWidget);
2636 //------------------------------------------------------------------------------
2639 //------------------------------------------------------------------------------
2640 void vvMainWindow::SaveSOScreenshot()
2642 SaveScreenshot(SOViewWidget);
2644 //------------------------------------------------------------------------------
2647 //------------------------------------------------------------------------------
2648 void vvMainWindow::SaveSEScreenshot()
2650 SaveScreenshot(SEViewWidget);
2652 //------------------------------------------------------------------------------
2655 //------------------------------------------------------------------------------
2656 void vvMainWindow::SaveScreenshotAllSlices()
2658 QVTKWidget *widget = NOViewWidget;
2660 int index = 0;// GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2661 vvSlicerManager * SM = mSlicerManagers[index];
2662 vvImage * image = SM->GetImage();
2663 vvSlicer * slicer = SM->GetSlicer(0);
2664 int orientation = slicer->GetOrientation();
2665 int nbSlices = image->GetSize()[orientation];
2666 vtkSmartPointer<vtkRenderWindow> renderWindow = widget->GetRenderWindow();
2668 // Select filename base
2669 QString filename = QFileDialog::getSaveFileName(this,
2670 tr("Save As (filename will be completed by slice number)"),
2671 itksys::SystemTools::GetFilenamePath(mSlicerManagers[index]->GetFileName()).c_str(),
2672 "Images( *.png);;Images( *.jpg)");
2675 for(int i=0; i<nbSlices; i++) {
2677 slicer->SetSlice(i); // -> change the slice of the current slicer
2678 SM->UpdateSlice(0); // --> this one emit UpdateSlice
2679 QCoreApplication::flush(); // -> needed to force display of contours
2682 vtkSmartPointer<vtkWindowToImageFilter> windowToImageFilter = vtkSmartPointer<vtkWindowToImageFilter>::New();
2683 windowToImageFilter->SetInput(renderWindow);
2684 windowToImageFilter->SetMagnification(1);
2685 windowToImageFilter->SetInputBufferTypeToRGBA(); //also record the alpha (transparency) channel
2686 windowToImageFilter->Update();
2688 vtkSmartPointer<vtkPNGWriter> writer = vtkSmartPointer<vtkPNGWriter>::New();
2689 std::string fn = itksys::SystemTools::GetFilenameWithoutLastExtension(filename.toStdString());
2690 std::string num = clitk::toString(i);
2691 if (i<10) num = "0"+num;
2692 if (i<100) num = "0"+num;
2693 if (i<1000) num = "0"+num;
2695 fn = itksys::SystemTools::GetFilenamePath(filename.toStdString()) + "/"+ fn
2696 + "_" + num + itksys::SystemTools::GetFilenameLastExtension(filename.toStdString());
2697 writer->SetFileName(fn.c_str());
2698 writer->SetInput(windowToImageFilter->GetOutput());
2702 //------------------------------------------------------------------------------
2705 //------------------------------------------------------------------------------
2706 void vvMainWindow::SaveScreenshot(QVTKWidget *widget)
2708 QString Extensions = "Images( *.png);;";
2709 Extensions += "Images( *.jpg);;";
2710 Extensions += "Images( *.bmp);;";
2711 Extensions += "Images( *.tif);;";
2712 Extensions += "Images( *.ppm)";
2713 #ifdef VTK_USE_FFMPEG_ENCODER
2714 Extensions += "Images( *.avi)";
2716 #ifdef VTK_USE_MPEG2_ENCODER
2717 Extensions += "Images( *.mpg)";
2720 int smIndex=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2721 QString fileName = QFileDialog::getSaveFileName(this,
2723 itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(),
2726 if (!fileName.isEmpty()) {
2727 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2728 w2i->SetInput(widget->GetRenderWindow());
2730 vtkImageData *image = w2i->GetOutput();
2732 const char *ext = fileName.toStdString().c_str() + strlen(fileName.toStdString().c_str()) - 4;
2733 if (!strcmp(ext, ".bmp")) {
2734 vtkBMPWriter *bmp = vtkBMPWriter::New();
2735 bmp->SetInput(image);
2736 bmp->SetFileName(fileName.toStdString().c_str());
2739 } else if (!strcmp(ext, ".tif")) {
2740 vtkTIFFWriter *tif = vtkTIFFWriter::New();
2741 tif->SetInput(image);
2742 tif->SetFileName(fileName.toStdString().c_str());
2745 } else if (!strcmp(ext, ".ppm")) {
2746 vtkPNMWriter *pnm = vtkPNMWriter::New();
2747 pnm->SetInput(image);
2748 pnm->SetFileName(fileName.toStdString().c_str());
2751 } else if (!strcmp(ext, ".png")) {
2752 vtkPNGWriter *png = vtkPNGWriter::New();
2753 png->SetInput(image);
2754 png->SetFileName(fileName.toStdString().c_str());
2757 } else if (!strcmp(ext, ".jpg")) {
2758 vtkJPEGWriter *jpg = vtkJPEGWriter::New();
2759 jpg->SetInput(image);
2760 jpg->SetFileName(fileName.toStdString().c_str());
2763 #ifdef VTK_USE_FFMPEG_ENCODER
2764 } else if (!strcmp(ext, ".avi")) {
2765 vtkFFMPEGWriter *mpg = vtkFFMPEGWriter::New();
2766 mpg->SetInput(image);
2767 mpg->SetFileName(fileName.toStdString().c_str());
2772 vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
2773 int nSlice = vvImg->GetVTKImages().size();
2774 for(int i=0; i<nSlice; i++) {
2775 mSlicerManagers[smIndex]->SetNextTSlice(0);
2776 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2777 w2i->SetInput(widget->GetRenderWindow());
2779 mpg->SetInput(w2i->GetOutput());
2785 #ifdef VTK_USE_MPEG2_ENCODER
2786 } else if (!strcmp(ext, ".mpg")) {
2787 vtkMPEG2Writer *mpg = vtkMPEG2Writer::New();
2788 mpg->SetInput(image);
2789 mpg->SetFileName(fileName.toStdString().c_str());
2792 vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
2793 int nSlice = vvImg->GetVTKImages().size();
2794 for(int i=0; i<nSlice; i++) {
2795 mSlicerManagers[smIndex]->SetNextTSlice(0);
2796 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2797 w2i->SetInput(widget->GetRenderWindow());
2799 mpg->SetInput(w2i->GetOutput());
2806 QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
2810 //------------------------------------------------------------------------------
2813 //------------------------------------------------------------------------------
2814 void vvMainWindow::GoToCursor()
2816 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2817 for (int column = 1; column < 5; column++) {
2818 if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1) {
2819 double* cursorPos = mSlicerManagers[index]->GetSlicer(column-1)->GetCursorPosition();
2820 mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
2821 cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
2822 mSlicerManagers[index]->UpdateViews(1,column-1);
2823 mSlicerManagers[index]->UpdateLinked(column-1);
2828 //------------------------------------------------------------------------------
2830 //------------------------------------------------------------------------------
2831 void vvMainWindow::PlayPause()
2835 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_play.png")));
2839 int image_number=DataTree->topLevelItemCount();
2841 for (int i=0; i<image_number; i++)
2842 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1) {
2848 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
2849 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2853 //------------------------------------------------------------------------------
2855 //------------------------------------------------------------------------------
2856 void vvMainWindow::PlayNext()
2858 if (playMode && !this->isHidden()) {
2859 int image_number=DataTree->topLevelItemCount();
2860 ///Only play one slicer per SM, and only if the SM is being displayed
2861 for (int i=0; i<image_number; i++)
2862 for (int j=0; j<4; j++)
2863 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1 &&
2864 DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
2865 mSlicerManagers[i]->SetNextTSlice(j);
2868 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2871 //------------------------------------------------------------------------------
2873 void vvMainWindow::ShowLastImage()
2875 if (mSlicerManagers.size() > 1) {
2876 QTreeWidgetItem * item=DataTree->topLevelItem(DataTree->topLevelItemCount()-1);
2877 CurrentImageChanged(mSlicerManagers.back()->GetId()); //select new image
2878 item->setData(1,Qt::CheckStateRole,2); //show the new image in the first panel
2879 DisplayChanged(item,1);
2883 //------------------------------------------------------------------------------
2884 void vvMainWindow::UpdateRenderWindows()
2886 if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
2887 if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
2888 if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
2889 if (SEViewWidget->GetRenderWindow()) SEViewWidget->GetRenderWindow()->Render();
2891 //------------------------------------------------------------------------------
2893 //------------------------------------------------------------------------------
2894 void vvMainWindow::SegmentationOnCurrentImage()
2896 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2898 vvSegmentationDialog segmentation;
2899 segmentation.SetImage(mSlicerManagers[index]->GetSlicer(0)->GetImage());
2900 segmentation.exec();
2902 //------------------------------------------------------------------------------
2904 void vvMainWindow::SurfaceViewerLaunch()
2906 vvSurfaceViewerDialog surfaceViewer;
2907 surfaceViewer.exec();
2909 //------------------------------------------------------------------------------
2912 //------------------------------------------------------------------------------
2913 int vvMainWindow::GetImageDuplicateFilenameNumber(std::string filename)
2916 for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
2917 vvSlicerManager * v = mSlicerManagers[l];
2918 if (v->GetBaseFileName() ==
2919 vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
2920 number = std::max(number, v->GetBaseFileNameNumber()+1);
2925 //------------------------------------------------------------------------------
2928 //------------------------------------------------------------------------------
2929 vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
2931 // Change filename if another image exist with the same name
2932 int number = GetImageDuplicateFilenameNumber(filename);
2934 // Create new SliceManager
2935 vvSlicerManager* slicer_manager = new vvSlicerManager(4);
2936 slicer_manager->SetImage(image);//, IMAGE, number);
2937 // filename = filename+"_"+clitk::toString(number);
2938 slicer_manager->SetFilename(filename, number);
2939 mSlicerManagers.push_back(slicer_manager);
2941 //create an item in the tree with good settings
2942 QTreeWidgetItem *item = new QTreeWidgetItem();
2943 item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
2944 item->setData(1,Qt::UserRole,tr("image"));
2945 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,slicer_manager->GetFileName().c_str());//filename.c_str());
2946 qApp->processEvents();
2948 for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1);
2950 //Create the buttons for reload and close
2951 qApp->processEvents();
2952 QTreePushButton* cButton = new QTreePushButton;
2953 cButton->setItem(item);
2954 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2955 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2956 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2957 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2959 QTreePushButton* rButton = new QTreePushButton;
2960 rButton->setItem(item);
2961 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2962 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2963 rButton->setEnabled(0);
2964 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2965 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2967 DataTree->addTopLevelItem(item);
2968 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2969 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2971 //set the id of the image
2972 QString id = slicer_manager->GetFileName().c_str() + QString::number(mSlicerManagers.size()-1);
2973 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2974 mSlicerManagers.back()->SetId(id.toStdString());
2976 linkPanel->addImage(slicer_manager->GetFileName().c_str()// filename
2977 , id.toStdString());
2979 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
2980 this, SLOT(CurrentImageChanged(std::string)));
2981 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
2982 this, SLOT(CurrentPickedImageChanged(std::string)));
2983 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
2984 this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
2985 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
2986 this, SLOT(VectorChanged(int,double,double,double, double)));
2987 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
2988 this, SLOT(OverlayChanged(int,double,double)));
2989 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
2990 this, SLOT(FusionChanged(int,double)));
2991 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
2992 this,SLOT(WindowLevelChanged()));
2993 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
2994 this,SLOT(UpdateSlice(int,int)));
2995 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
2996 this,SLOT(UpdateTSlice(int, int)));
2997 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
2998 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
2999 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
3000 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
3001 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
3002 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
3003 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
3004 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
3005 connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
3007 qApp->processEvents();
3011 qApp->processEvents();
3015 return slicer_manager;
3017 //------------------------------------------------------------------------------
3020 //------------------------------------------------------------------------------
3021 void vvMainWindow::UpdateCurrentSlicer()
3024 if (DataTree->selectedItems().size() > 0) {
3025 index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
3027 mSlicerManagerCurrentIndex = index;
3029 //------------------------------------------------------------------------------