1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ======================================================================-====*/
20 #include <QMessageBox>
21 #include <QInputDialog>
23 #include "QTreePushButton.h"
26 #include "vvMainWindow.h"
27 #include "vvHelpDialog.h"
28 #include "vvDocumentation.h"
29 #include "vvProgressDialog.h"
30 #include "vvQDicomSeriesSelector.h"
31 #include "vvSlicerManager.h"
32 #include "clitkImageCommon.h"
34 #include "vvInteractorStyleNavigator.h"
35 #include "vvImageWriter.h"
36 #include "vvSegmentationDialog.h"
37 #include "vvSurfaceViewerDialog.h"
38 #include "vvDeformationDialog.h"
39 #include "vvImageWarp.h"
41 #include "vvMaximumIntensityProjection.h"
42 #include "vvMidPosition.h"
44 #include "vvStructSelector.h"
45 #include "vvMeshReader.h"
46 #include "vvConstants.h"
48 #ifdef CLITK_VV_USE_BDCM
49 #include <bdcmDicomFilesSelectorDialog.h>
54 #include "itkImageFileReader.h"
55 #include "itkByteSwapper.h"
56 #include "itkCommand.h"
57 #include "itkNumericSeriesFileNames.h"
60 #include "vtkImageData.h"
61 #include "vtkImageActor.h"
62 #include "vtkCornerAnnotation.h"
63 #include "vtkRenderWindow.h"
64 #include "vtkRenderWindowInteractor.h"
65 #include "vtkRenderer.h"
66 #include "vtkRendererCollection.h"
67 #include "vtkWindowToImageFilter.h"
68 #include "vtkBMPWriter.h"
69 #include "vtkTIFFWriter.h"
70 #include "vtkPNMWriter.h"
71 #include "vtkPNGWriter.h"
72 #include "vtkJPEGWriter.h"
78 #define COLUMN_UL_VIEW 1
79 #define COLUMN_UR_VIEW 2
80 #define COLUMN_DL_VIEW 3
81 #define COLUMN_DR_VIEW 4
82 #define COLUMN_CLOSE_IMAGE 5
83 #define COLUMN_RELOAD_IMAGE 6
84 #define COLUMN_IMAGE_NAME 7
86 #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.hdr *.vox *.his *.xdr)"
89 0,Qt::UserRole full filename
90 1,Qt::CheckStateRole checkbutton UL View
91 1,Qt::UserRole overlay, fusion or vector
92 2,Qt::CheckStateRole checkbutton UR View
93 3,Qt::CheckStateRole checkbutton DL View
94 4,Qt::CheckStateRole checkbutton DR View
96 5,Qt::UserRole mSlicerManager id*/
98 //------------------------------------------------------------------------------
99 vvMainWindow::vvMainWindow():vvMainWindowBase() {
100 setupUi(this); // this sets up the GUI
103 mMenuTools = menuTools;
104 mContextMenu = &contextMenu;
105 mMenuExperimentalTools = menuExperimental;
109 //Init the contextMenu
110 this->setContextMenuPolicy(Qt::CustomContextMenu);
111 contextActions.resize(0);
112 QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
113 tr("O&pen new Image"));
114 actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
115 connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
116 contextActions.push_back(actionOpen_new_image);
117 contextMenu.addSeparator();
119 QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
120 tr("Close Current Image"));
121 connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
122 contextActions.push_back(actionClose_Image);
124 QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
125 tr("Reload Current Image"));
126 connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
127 contextActions.push_back(actionReload_image);
129 QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
130 tr("Save Current Image"));
131 connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
132 contextActions.push_back(actionSave_image);
134 contextMenu.addSeparator();
136 // QAction* actionCrop_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/crop.png")),
137 // tr("Crop Current Image"));
138 // connect(actionCrop_image,SIGNAL(triggered()),this,SLOT(CropImage()));
139 // contextActions.push_back(actionCrop_image);
141 QAction* actionSplit_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/cut.png")),
142 tr("Split Current Image"));
143 connect(actionSplit_image,SIGNAL(triggered()),this,SLOT(SplitImage()));
144 contextActions.push_back(actionSplit_image);
146 contextMenu.addSeparator();
148 contextMenu.addAction(actionAdd_VF_to_current_Image);
149 contextActions.push_back(actionAdd_VF_to_current_Image);
151 QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
152 tr("Add overlay image to current image"));
153 contextMenu.addAction(actionAdd_Overlay_to_current_Image);
154 contextActions.push_back(actionAdd_Overlay_to_current_Image);
156 connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
158 contextMenu.addAction(actionAdd_fusion_image);
159 connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
160 contextActions.push_back(actionAdd_fusion_image);
164 QMenu * m = new QMenu(menubar);
166 // m->setObjectName(QString::fromUtf8("TOTOTO"));
167 contextMenu.addMenu(m);
168 QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
170 QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
174 connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
178 mSlicerManagers.resize(0);
188 header.append("Name");
190 DataTree->setHeaderLabels(header);
191 DataTree->resizeColumnToContents(COLUMN_TREE);
192 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
193 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
194 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
195 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
196 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
197 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
198 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
201 documentation = new vvDocumentation();
202 help_dialog = new vvHelpDialog();
203 dicomSeriesSelector = new vvDicomSeriesSelector();
205 inverseButton->setEnabled(0);
206 actionAdd_Overlay_to_current_Image->setEnabled(0);
207 actionSave_As->setEnabled(0);
208 actionAdd_VF_to_current_Image->setEnabled(0);
209 actionAdd_fusion_image->setEnabled(0);
212 verticalSliders.push_back(NOVerticalSlider);
213 verticalSliders.push_back(NEVerticalSlider);
214 verticalSliders.push_back(SOVerticalSlider);
215 verticalSliders.push_back(SEVerticalSlider);
217 for (int i =0; i < 4; i++)
218 verticalSliders[i]->hide();
220 horizontalSliders.push_back(NOHorizontalSlider);
221 horizontalSliders.push_back(NEHorizontalSlider);
222 horizontalSliders.push_back(SOHorizontalSlider);
223 horizontalSliders.push_back(SEHorizontalSlider);
225 for (int i =0; i < 4; i++)
226 horizontalSliders[i]->hide();
229 connect(NOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOVerticalSliderChanged()));
230 connect(NEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEVerticalSliderChanged()));
231 connect(SOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOVerticalSliderChanged()));
232 connect(SEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEVerticalSliderChanged()));
234 connect(NOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOHorizontalSliderMoved()));
235 connect(NEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEHorizontalSliderMoved()));
236 connect(SOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOHorizontalSliderMoved()));
237 connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved()));
240 connect(actionMaximum_Intensity_Projection,SIGNAL(triggered()),this,SLOT(ComputeMIP()));
241 connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition()));
242 connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration()));
243 connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
244 connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
245 connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
246 connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
247 connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
248 connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
249 connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
250 connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
251 connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
252 connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
253 connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
254 connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
255 connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
257 ///////////////////////////////////////////////
258 connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
259 connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
260 ///////////////////////////////////////////////
262 actionNorth_East_Window->setEnabled(0);
263 actionNorth_West_Window->setEnabled(0);
264 actionSouth_East_Window->setEnabled(0);
265 actionSouth_West_Window->setEnabled(0);
267 connect(actionNorth_East_Window,SIGNAL(triggered()),this,SLOT(SaveNEScreenshot()));
268 connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
269 connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
270 connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
272 connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
273 connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
274 SLOT(DisplayChanged(QTreeWidgetItem*, int)));
276 connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
277 connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
278 connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
279 connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
280 connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
281 connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
284 connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
286 connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
287 connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
288 connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int)),this,SLOT(SetVFProperty(int,int,int,int)));
289 connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int)),this,SLOT(SetOverlayProperty(int)));
290 connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,double,double)),
291 this,SLOT(SetFusionProperty(int,int,double,double)));
292 connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
296 playButton->setEnabled(0);
297 frameRateLabel->setEnabled(0);
298 frameRateSpinBox->setEnabled(0);
299 connect(playButton, SIGNAL(clicked()),this,SLOT(PlayPause()));
300 connect(frameRateSpinBox, SIGNAL(valueChanged(int)),this,SLOT(ChangeFrameRate(int)));
302 goToCursorPushButton->setEnabled(0);
303 connect(goToCursorPushButton, SIGNAL(clicked()),this,SLOT(GoToCursor()));
305 NOViewWidget->hide();
306 NEViewWidget->hide();
307 SOViewWidget->hide();
308 SEViewWidget->hide();
310 //Recently opened files
311 std::list<std::string> recent_files = GetRecentlyOpenedImages();
312 if ( !recent_files.empty() )
314 QMenu * rmenu = new QMenu("Recently opened files...");
315 rmenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
316 menuFile->insertMenu(actionOpen_Image_With_Time,rmenu);
317 for (std::list<std::string>::iterator i = recent_files.begin();i!=recent_files.end();i++)
319 QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")),
321 rmenu->addAction(current);
322 connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage()));
326 // Adding all new tools (insertion in the menu)
327 vvToolManager::GetInstance()->InsertToolsInMenu(this);
329 if (!CLITK_EXPERIMENTAL)
330 menuExperimental->menuAction()->setVisible(false);
332 //------------------------------------------------------------------------------
335 //------------------------------------------------------------------------------
336 void vvMainWindow::ComputeMIP()
338 vvMaximumIntensityProjection mip;
339 vvSlicerManager* selected_slicer = mSlicerManagers[GetSlicerIndexFromItem(DataTree->selectedItems()[0])];
340 QFileInfo info(selected_slicer->GetFileName().c_str());
341 mip.Compute(selected_slicer);
343 AddImage(mip.GetOutput(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_mip.mhd");
345 //------------------------------------------------------------------------------
348 //------------------------------------------------------------------------------
349 void vvMainWindow::ComputeMidPosition()
352 int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
353 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
354 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
358 midp.slicer_manager = mSlicerManagers[index];
359 midp.reference_image_index = ref;
360 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
363 QMessageBox::warning(this, "Error computing midposition image",midp.error_message.c_str());
366 QFileInfo info(midp.slicer_manager->GetFileName().c_str());
367 AddImage(midp.output,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_midposition.mhd");
369 QApplication::restoreOverrideCursor();
372 //------------------------------------------------------------------------------
375 //------------------------------------------------------------------------------
376 void vvMainWindow::AddContour(int image_index, vvMesh::Pointer contour, bool propagation)
378 QTreeWidgetItem *item = new QTreeWidgetItem();
379 item->setData(0,Qt::UserRole,"filename.vtk");
380 item->setData(1,Qt::UserRole,tr("contour"));
382 brush.setColor(QColor(contour->r*255,contour->g*255,contour->b*255));
383 brush.setStyle(Qt::SolidPattern);
384 item->setData(COLUMN_IMAGE_NAME,Qt::BackgroundRole,brush);
385 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
387 for (int j = 1; j <= 4; j++)
388 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(image_index)->data(j,Qt::CheckStateRole));
390 QTreePushButton* cButton = new QTreePushButton;
391 cButton->setItem(item);
392 cButton->setColumn(COLUMN_CLOSE_IMAGE);
393 cButton->setToolTip(tr("close image"));
394 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
395 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
396 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
398 QTreePushButton* rButton = new QTreePushButton;
399 rButton->setItem(item);
400 rButton->setColumn(COLUMN_RELOAD_IMAGE);
401 rButton->setToolTip(tr("reload image"));
402 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
403 rButton->setEnabled(false);
405 //connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
406 //this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
408 DataTree->topLevelItem(image_index)->setExpanded(1);
409 DataTree->topLevelItem(image_index)->addChild(item);
410 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
411 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
412 QString id = DataTree->topLevelItem(image_index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
413 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
416 mSlicerManagers[image_index]->AddContour(contour,propagation);
417 mSlicerManagers[image_index]->Render();
419 //------------------------------------------------------------------------------
422 //------------------------------------------------------------------------------
423 void vvMainWindow::OpenVTKContour()
425 if (mSlicerManagers.size() > 0)
427 QString Extensions = "Images ( *.vtk; *.obj)";
428 Extensions += ";;All Files (*)";
429 QString file = QFileDialog::getOpenFileName(this,tr("Open vtkPolyData"),mInputPathName,Extensions);
432 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
433 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
435 reader.SetImage(mSlicerManagers[index]->GetImage());
436 reader.SetModeToVTK();
437 reader.SetFilename(file.toStdString());
439 AddContour(index,reader.GetOutput()[0],false);
440 QApplication::restoreOverrideCursor();
443 //------------------------------------------------------------------------------
446 //------------------------------------------------------------------------------
447 void vvMainWindow::OpenDCStructContour()
449 if (mSlicerManagers.size() > 0)
451 QString Extensions = "Dicom Files ( *.dcm; RS*)";
452 Extensions += ";;All Files (*)";
453 QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
456 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
458 reader.SetFilename(file.toStdString());
459 vvStructSelector selector;
460 selector.SetStructures(reader.GetROINames());
461 if (!mSlicerManagers[index]->GetVF().IsNull())
462 selector.EnablePropagationCheckBox();
465 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
466 reader.SetSelectedItems(selector.getSelectedItems());
467 reader.SetImage(mSlicerManagers[index]->GetImage());
468 if (selector.PropagationEnabled())
469 reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
471 std::vector<vvMesh::Pointer> contours=reader.GetOutput();
472 for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
473 i!=contours.end();i++)
474 AddContour(index,*i,selector.PropagationEnabled());
475 QApplication::restoreOverrideCursor();
479 //------------------------------------------------------------------------------
482 //------------------------------------------------------------------------------
483 void vvMainWindow::ComputeDeformableRegistration()
485 if (mSlicerManagers.size() > 0)
487 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
488 vvDeformationDialog dialog(index,mSlicerManagers);
491 std::string base_name=itksys::SystemTools::GetFilenameWithoutExtension(mSlicerManagers[dialog.GetInputFileIndex()]->GetFileName());
492 AddField(dialog.GetOutput(),dialog.getFieldFile(),dialog.GetInputFileIndex());
493 WarpImage(dialog.GetSelectedSlicer(),dialog.GetReferenceFrameIndex());
496 std::cout << "Error or user cancellation while computing deformation field..." << std::endl;
498 else QMessageBox::information(this, "Need to open image","You must open an image first.");
500 //------------------------------------------------------------------------------
503 //------------------------------------------------------------------------------
504 void vvMainWindow::WarpImage()
506 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
507 if (!mSlicerManagers[index]->GetVF().IsNull())
510 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
511 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
514 WarpImage(mSlicerManagers[index],ref);
518 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field"));
520 //------------------------------------------------------------------------------
523 //------------------------------------------------------------------------------
524 void vvMainWindow::WarpImage(vvSlicerManager* selected_slicer,int reference_phase)
526 if (!selected_slicer->GetVF().IsNull())
528 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
529 QFileInfo info(selected_slicer->GetFileName().c_str());
530 vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
531 reference_phase,this);
532 if (warp.ComputeWarpedImage())
534 AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
535 AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
536 AddImage(warp.GetJacobianImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_jacobian.mhd");
537 QApplication::restoreOverrideCursor();
541 QApplication::restoreOverrideCursor();
542 QMessageBox::warning(this,tr("Different spacings"),tr("The vector field and image spacings must be the same in order to warp."));
546 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field."));
548 //------------------------------------------------------------------------------
551 //------------------------------------------------------------------------------
552 vvMainWindow::~vvMainWindow() {
553 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
555 if (mSlicerManagers[i] != NULL)
556 delete mSlicerManagers[i];
559 //------------------------------------------------------------------------------
562 //------------------------------------------------------------------------------
563 void vvMainWindow::MergeImages() {
564 QString Extensions = EXTENSIONS;
565 Extensions += ";;All Files (*)";
566 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images"),mInputPathName,Extensions);
569 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
570 std::vector<std::string> vector;
572 unsigned int currentDim = 0;
573 std::vector<double> currentSpacing;
574 std::vector<int> currentSize;
575 std::vector<double> currentOrigin;
577 for (int i = 0; i < files.size(); i++)
579 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
580 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
581 reader->SetFileName(files[i].toStdString().c_str());
582 reader->ReadImageInformation();
584 //NOViewWidget->hide();
585 //NEViewWidget->hide();
586 //SOViewWidget->hide();
587 //SEViewWidget->hide();
589 currentDim = reader->GetNumberOfDimensions();
591 for (unsigned int j = 0;j < currentDim; j++)
597 currentSpacing.resize(currentDim);
598 currentSize.resize(currentDim);
599 currentOrigin.resize(currentDim);
601 currentOrigin[j] = reader->GetOrigin(j);
602 currentSpacing[j] = reader->GetSpacing(j);
603 currentSize[j] = reader->GetDimensions(j);
605 else if (currentDim != reader->GetNumberOfDimensions()
606 || currentSpacing[j] != reader->GetSpacing(j)
607 || currentSize[j] != (int)reader->GetDimensions(j)
608 || currentOrigin[j] != reader->GetOrigin(j))
610 QString error = "Cannot read file (too different from others ";
611 error += files[i].toStdString().c_str();
612 QMessageBox::information(this,tr("Reading problem"),error);
618 vector.push_back(files[i].toStdString());
621 if (vector.size() > 0)
622 LoadImages(vector, MERGED);
624 //------------------------------------------------------------------------------
627 //------------------------------------------------------------------------------
628 void vvMainWindow::MergeImagesWithTime() {
629 QString Extensions = EXTENSIONS;
630 Extensions += ";;All Files (*)";
631 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images With Time"),mInputPathName,Extensions);
634 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
635 std::vector<std::string> vector;
637 unsigned int currentDim = 0;
638 std::vector<double> currentSpacing;
639 std::vector<int> currentSize;
640 std::vector<double> currentOrigin;
642 for (int i = 0; i < files.size(); i++)
644 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
645 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
648 reader->SetFileName(files[i].toStdString().c_str());
649 reader->ReadImageInformation();
651 currentDim = reader->GetNumberOfDimensions();
653 for (unsigned int j = 0;j < currentDim; j++)
659 currentSpacing.resize(currentDim);
660 currentSize.resize(currentDim);
661 currentOrigin.resize(currentDim);
663 currentOrigin[j] = reader->GetOrigin(j);
664 currentSpacing[j] = reader->GetSpacing(j);
665 currentSize[j] = reader->GetDimensions(j);
667 else if (currentDim != reader->GetNumberOfDimensions()
668 || currentSpacing[j] != reader->GetSpacing(j)
669 || currentSize[j] != (int)reader->GetDimensions(j)
670 || currentOrigin[j] != reader->GetOrigin(j))
672 QString error = "Cannot read file (too different from others ";
673 error += files[i].toStdString().c_str();
674 QMessageBox::information(this,tr("Reading problem"),error);
680 vector.push_back(files[i].toStdString());
684 QString error = "Cannot read file info for ";
685 error += files[i].toStdString().c_str();
687 error += "Maybe you're trying to open an image in an unsupported format?\n";
688 QMessageBox::information(this,tr("Reading problem"),error);
691 sort(vector.begin(),vector.end());
692 if (vector.size() > 1)
693 LoadImages(vector, MERGEDWITHTIME);
695 QMessageBox::warning(this,tr("Reading problem"),"You need to select at least two images to merge images with time.\nIf you only want to open one image, please use the \"Open Image\" function.");
697 //------------------------------------------------------------------------------
700 //------------------------------------------------------------------------------
701 void vvMainWindow::OpenDicom() {
702 std::vector<std::string> files;
704 #ifdef CLITK_VV_USE_BDCM
705 bool r = bdcm::OpenDicomFilesSelectorDialog(files,
706 "DicomFilesSelectorDialog test",
710 std::cout << "$$$$ main : user clicked 'OK' $$$$"<<std::endl;
711 std::cout << "$$$$ selected files : "<<std::endl;
712 std::vector<std::string>::iterator i;
713 for (i=files.begin();i!=files.end();++i) {
714 std::cout << *i << std::endl;
716 std::cout << "$$$$ "<<std::endl;
718 LoadImages(files,DICOM);
721 std::cout << "$$$$ main : user clicked 'CANCEL' $$$$"<<std::endl;
724 std::cout << "dicomSeriesSelector " << std::endl;
725 if (dicomSeriesSelector->exec() == QDialog::Accepted) {
726 files = *(dicomSeriesSelector->GetFilenames());
727 LoadImages(files,DICOM);
732 //------------------------------------------------------------------------------
734 //------------------------------------------------------------------------------
735 void vvMainWindow::OpenImages() {
736 QString Extensions = EXTENSIONS;
737 Extensions += ";;All Files (*)";
739 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images"),mInputPathName,Extensions);
742 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
743 std::vector<std::string> vector;
744 for (int i = 0; i < files.size(); i++)
745 vector.push_back(files[i].toStdString());
746 LoadImages(vector, IMAGE);
748 //------------------------------------------------------------------------------
749 void vvMainWindow::OpenRecentImage()
751 QAction * caller = qobject_cast<QAction*>(sender());
752 std::vector<std::string> images;
753 images.push_back(caller->text().toStdString());
754 mInputPathName = itksys::SystemTools::GetFilenamePath(images[0]).c_str();
755 LoadImages(images,IMAGE);
757 //------------------------------------------------------------------------------
760 //------------------------------------------------------------------------------
761 void vvMainWindow::OpenImageWithTime() {
762 QString Extensions = EXTENSIONS;
763 Extensions += ";;All Files (*)";
765 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images With Time"),mInputPathName,Extensions);
768 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
769 std::vector<std::string> vector;
770 for (int i = 0; i < files.size(); i++)
772 vector.push_back(files[i].toStdString());
774 LoadImages(vector, IMAGEWITHTIME);
776 //------------------------------------------------------------------------------
779 //------------------------------------------------------------------------------
780 void vvMainWindow::LoadImages(std::vector<std::string> files, LoadedImageType filetype) {
781 //Separate the way to open images and dicoms
783 if (filetype == IMAGE || filetype == IMAGEWITHTIME)
784 fileSize = files.size();
788 //Only add to the list of recently opened files when a single file is opened,
789 //to avoid polluting the list of recently opened files
790 if (files.size() == 1)
792 QFileInfo finfo=tr(files[0].c_str());
793 AddToRecentlyOpenedImages(finfo.absoluteFilePath().toStdString());
795 //init the progress events
796 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
797 vvProgressDialog progress("Opening " + files[0],fileSize>1);
798 qApp->processEvents();
800 int numberofsuccesulreads=0;
801 //open images as 1 or multiples
802 for (int i = 0; i < fileSize; i++) {
804 progress.Update("Opening " + files[i]);
805 progress.SetProgress(i,fileSize);
806 qApp->processEvents();
808 //read the image and put it in mSlicerManagers
809 vvSlicerManager* imageManager = new vvSlicerManager(4);
810 qApp->processEvents();
812 bool SetImageSucceed=false;
814 // Change filename if an image with the same already exist
817 for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
818 vvSlicerManager * v = mSlicerManagers[l];
819 // DD(v->GetBaseFileName());
820 // DD(v->GetFileName());
821 if (v->GetBaseFileName() ==
822 vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(files[i]))) {
823 number = std::max(number, v->GetBaseFileNameNumber()+1);
828 if (filetype == IMAGE || filetype == IMAGEWITHTIME)
829 SetImageSucceed = imageManager->SetImage(files[i],filetype, number);
832 SetImageSucceed = imageManager->SetImages(files,filetype, number);
834 if (SetImageSucceed == false)
836 QApplication::restoreOverrideCursor();
837 QString error = "Cannot open file \n";
838 error += imageManager->GetLastError().c_str();
839 QMessageBox::information(this,tr("Reading problem"),error);
844 mSlicerManagers.push_back(imageManager);
846 //create an item in the tree with good settings
847 QTreeWidgetItem *item = new QTreeWidgetItem();
848 item->setData(0,Qt::UserRole,files[i].c_str());
849 QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
850 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
851 qApp->processEvents();
853 //Create the buttons for reload and close
854 qApp->processEvents();
855 QTreePushButton* cButton = new QTreePushButton;
856 cButton->setItem(item);
857 cButton->setColumn(COLUMN_CLOSE_IMAGE);
858 cButton->setToolTip(tr("close image"));
859 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
860 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
861 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
863 QTreePushButton* rButton = new QTreePushButton;
864 rButton->setItem(item);
865 rButton->setColumn(COLUMN_RELOAD_IMAGE);
866 rButton->setToolTip(tr("reload image"));
867 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
868 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
869 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
871 DataTree->addTopLevelItem(item);
872 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
873 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
875 //set the id of the image
876 QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
877 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
878 mSlicerManagers.back()->SetId(id.toStdString());
880 linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
882 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
883 this,SLOT(CurrentImageChanged(std::string)));
884 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
885 this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
886 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
887 this, SLOT(VectorChanged(int,double,double,double, double)));
888 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
889 this, SLOT(OverlayChanged(int,double,double)));
890 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
891 this, SLOT(FusionChanged(int,double)));
892 connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
893 this,SLOT(WindowsChanged(int, int, int)));
894 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
895 this,SLOT(WindowLevelChanged(double, double, int, int)));
896 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
897 this,SLOT(UpdateSlice(int,int)));
898 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
899 this,SLOT(UpdateTSlice(int, int)));
900 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
901 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
902 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
903 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
904 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
905 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
906 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
908 numberofsuccesulreads++;
911 if (numberofsuccesulreads)
913 NOViewWidget->show();
914 NEViewWidget->show();
915 SOViewWidget->show();
916 SEViewWidget->show();
921 QApplication::restoreOverrideCursor();
923 // Try to guess default WindowLevel
925 mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
928 if ((range[0] == 0) && (range[1] == 1)) {
929 presetComboBox->setCurrentIndex(5);// binary
935 //------------------------------------------------------------------------------
937 //------------------------------------------------------------------------------
938 void vvMainWindow::UpdateTree() {
939 DataTree->resizeColumnToContents(COLUMN_TREE);
940 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
941 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
942 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
943 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
944 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
945 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
946 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
948 //------------------------------------------------------------------------------
950 //------------------------------------------------------------------------------
951 void vvMainWindow::CurrentImageChanged(std::string id) {
953 for (int i = 0; i < DataTree->topLevelItemCount(); i++)
955 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id)
961 DataTree->topLevelItem(i)->setSelected(0);
963 for (int child = 0; child < DataTree->topLevelItem(i)->childCount();child++)
964 DataTree->topLevelItem(i)->child(child)->setSelected(0);
967 DataTree->topLevelItem(selected)->setSelected(1);
969 //------------------------------------------------------------------------------
971 //------------------------------------------------------------------------------
972 void vvMainWindow::ImageInfoChanged() {
973 contextActions[7]->setEnabled(1);
974 contextActions[6]->setEnabled(1);
975 actionSave_As->setEnabled(1);
976 actionAdd_VF_to_current_Image->setEnabled(1);
977 actionAdd_fusion_image->setEnabled(1);
978 actionNorth_East_Window->setEnabled(1);
979 actionNorth_West_Window->setEnabled(1);
980 actionSouth_East_Window->setEnabled(1);
981 actionSouth_West_Window->setEnabled(1);
982 inverseButton->setEnabled(1);
984 goToCursorPushButton->setEnabled(1);
986 if (DataTree->selectedItems().size()) {
987 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
989 colorMapComboBox->setEnabled(1);
990 for (int i = 0; i < DataTree->topLevelItem(index)->childCount();i++)
992 if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
993 DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion")
995 colorMapComboBox->setEnabled(0);
1000 std::vector<double> origin;
1001 std::vector<double> inputSpacing;
1002 std::vector<int> inputSize;
1003 std::vector<double> sizeMM;
1006 QString inputSizeInBytes;
1007 QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1009 if (mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size() > 1 || playMode == 1)
1011 playButton->setEnabled(1);
1012 frameRateLabel->setEnabled(1);
1013 frameRateSpinBox->setEnabled(1);
1017 playButton->setEnabled(0);
1018 frameRateLabel->setEnabled(0);
1019 frameRateSpinBox->setEnabled(0);
1025 if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0])
1027 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1028 dimension = imageSelected->GetNumberOfDimensions();
1029 origin.resize(dimension);
1030 inputSpacing.resize(dimension);
1031 inputSize.resize(dimension);
1032 sizeMM.resize(dimension);
1033 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
1034 for (int i = 0;i < dimension;i++)
1036 origin[i] = imageSelected->GetOrigin()[i];
1037 inputSpacing[i] = imageSelected->GetSpacing()[i];
1038 inputSize[i] = imageSelected->GetSize()[i];
1039 sizeMM[i] = inputSize[i]*inputSpacing[i];
1040 NPixel *= inputSize[i];
1042 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1044 else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector")
1046 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
1047 dimension = imageSelected->GetNumberOfDimensions();
1048 origin.resize(dimension);
1049 inputSpacing.resize(dimension);
1050 inputSize.resize(dimension);
1051 sizeMM.resize(dimension);
1052 pixelType = mSlicerManagers[index]->GetVF()->GetScalarTypeAsString().c_str();
1053 for (int i = 0;i < dimension;i++)
1055 origin[i] = imageSelected->GetOrigin()[i];
1056 inputSpacing[i] = imageSelected->GetSpacing()[i];
1057 inputSize[i] = imageSelected->GetSize()[i];
1058 sizeMM[i] = inputSize[i]*inputSpacing[i];
1059 NPixel *= inputSize[i];
1061 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1063 else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay")
1065 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
1066 dimension = imageSelected->GetNumberOfDimensions();
1067 origin.resize(dimension);
1068 inputSpacing.resize(dimension);
1069 inputSize.resize(dimension);
1070 sizeMM.resize(dimension);
1071 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
1072 for (int i = 0;i < dimension;i++)
1074 origin[i] = imageSelected->GetOrigin()[i];
1075 inputSpacing[i] = imageSelected->GetSpacing()[i];
1076 inputSize[i] = imageSelected->GetSize()[i];
1077 sizeMM[i] = inputSize[i]*inputSpacing[i];
1078 NPixel *= inputSize[i];
1080 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1082 else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion")
1084 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
1085 dimension = imageSelected->GetNumberOfDimensions();
1086 origin.resize(dimension);
1087 inputSpacing.resize(dimension);
1088 inputSize.resize(dimension);
1089 sizeMM.resize(dimension);
1090 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
1091 for (int i = 0;i < dimension;i++)
1093 origin[i] = imageSelected->GetOrigin()[i];
1094 inputSpacing[i] = imageSelected->GetSpacing()[i];
1095 inputSize[i] = imageSelected->GetSize()[i];
1096 sizeMM[i] = inputSize[i]*inputSpacing[i];
1097 NPixel *= inputSize[i];
1099 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1102 QString dim = QString::number(dimension) + " (";
1103 dim += pixelType + ")";
1105 infoPanel->setFileName(image);
1106 infoPanel->setDimension(dim);
1107 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1108 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1109 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1110 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1111 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1113 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1114 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1115 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1116 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1118 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1119 for (int i = 0; i < 4;i++)
1121 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3)
1123 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1127 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1128 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1129 // DD(mSlicerManagers[index]->GetColorMap());
1130 // DD(mSlicerManagers[index]->GetPreset());
1131 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1132 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1134 infoPanel->setFileName(image);
1135 infoPanel->setDimension(dim);
1136 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1137 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1138 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1139 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1140 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1142 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1143 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1144 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1145 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1147 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1148 for (int i = 0; i < 4;i++)
1150 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3)
1152 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1156 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1157 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1158 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1159 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1161 if (mSlicerManagers[index]->GetSlicer(0)->GetVF())
1163 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1164 overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
1165 mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
1166 mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
1170 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1171 overlayPanel->getVFProperty(-1,-1,-1);
1173 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay())
1175 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1176 overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor());
1180 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1181 overlayPanel->getOverlayProperty(-1);
1183 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion())
1185 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1186 overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
1187 mSlicerManagers[index]->GetFusionColorMap(),
1188 mSlicerManagers[index]->GetFusionWindow(),
1189 mSlicerManagers[index]->GetFusionLevel());
1193 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1194 overlayPanel->getFusionProperty(-1, -1,-1,-1);
1198 //------------------------------------------------------------------------------
1200 //------------------------------------------------------------------------------
1201 void vvMainWindow::ShowDocumentation() {
1202 documentation->show();
1204 //------------------------------------------------------------------------------
1205 void vvMainWindow::ShowHelpDialog() {
1206 help_dialog->show();
1208 //------------------------------------------------------------------------------
1210 //------------------------------------------------------------------------------
1211 void vvMainWindow::ChangeViewMode() {
1212 QListIterator<int> it0(splitter_3->sizes());
1213 QListIterator<int> it1(splitter_3->sizes());
1216 while (it0.hasNext())
1220 while (it1.hasNext())
1229 size0.push_back(max0);
1231 size1.push_back(max1);
1233 splitter_3->setSizes(size0);
1234 OSplitter->setSizes(size1);
1235 DataTree->setColumnHidden(2,1);
1236 DataTree->setColumnHidden(3,1);
1237 DataTree->setColumnHidden(4,1);
1242 size0.push_back(int(max0/2));
1243 size0.push_back(int(max0/2));
1244 size1.push_back(int(max1/2));
1245 size1.push_back(int(max1/2));
1246 splitter_3->setSizes(size0);
1247 OSplitter->setSizes(size1);
1248 DataTree->setColumnHidden(2,0);
1249 DataTree->setColumnHidden(3,0);
1250 DataTree->setColumnHidden(4,0);
1253 //------------------------------------------------------------------------------
1255 //------------------------------------------------------------------------------
1256 QString vvMainWindow::GetSizeInBytes(unsigned long size) {
1257 QString result = "";// QString::number(size);
1258 //result += " bytes (";
1259 if (size > 1000000000)
1262 result += QString::number(size);
1263 result += "Gb";//)";
1265 else if (size > 1000000)
1268 result += QString::number(size);
1269 result += "Mb";//)";
1271 else if (size > 1000)
1274 result += QString::number(size);
1275 result += "kb";//)";
1279 //------------------------------------------------------------------------------
1281 //------------------------------------------------------------------------------
1282 QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble) {
1284 for (unsigned int i= 0; i < vectorDouble.size(); i++)
1288 result += QString::number(vectorDouble[i]);
1292 //------------------------------------------------------------------------------
1294 //------------------------------------------------------------------------------
1295 QString vvMainWindow::GetVectorIntAsString(std::vector<int> vectorInt) {
1297 for (unsigned int i= 0; i < vectorInt.size(); i++)
1301 result += QString::number(vectorInt[i]);
1305 //------------------------------------------------------------------------------
1307 //------------------------------------------------------------------------------
1308 int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item) {
1309 QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1310 for (int i = 0; i < DataTree->topLevelItemCount(); i++)
1312 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1317 //------------------------------------------------------------------------------
1319 //------------------------------------------------------------------------------
1320 QTreeWidgetItem* vvMainWindow::GetItemFromSlicerManager(vvSlicerManager* sm) {
1321 QString id = sm->GetId().c_str();
1322 for (int i = 0; i < DataTree->topLevelItemCount(); i++)
1324 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1325 return DataTree->topLevelItem(i);
1329 //------------------------------------------------------------------------------
1331 //------------------------------------------------------------------------------
1332 void vvMainWindow::DisplayChanged(QTreeWidgetItem *clicked_item, int column) {
1333 int index = GetSlicerIndexFromItem(clicked_item);
1334 if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
1336 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
1338 //Trick to avoid redoing twice the job for a key (sr)
1339 mSlicerManagers[i]->GetSlicer(column-1)->GetRenderWindow()-> GetInteractor()->SetKeySym("Crap");
1341 QTreeWidgetItem* current_row=DataTree->topLevelItem(i);
1342 if (DataTree->topLevelItem(index) == current_row)
1344 vvSlicer* clicked_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1345 if (current_row == clicked_item)
1347 //If we just activated a slicer
1348 if (current_row->data(column,Qt::CheckStateRole).toInt() > 0)
1350 mSlicerManagers[i]->UpdateSlicer(column-1,clicked_item->data(column,Qt::CheckStateRole).toInt());
1351 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1352 DisplaySliders(i,column-1);
1353 std::map<std::string,int> overlay_counts;
1354 for (int child = 0; child < current_row->childCount(); child++)
1356 std::string overlay_type =
1357 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1358 overlay_counts[overlay_type]++;
1359 current_row->child(child)->setData(column,Qt::CheckStateRole,
1360 current_row->data(column,Qt::CheckStateRole));
1361 clicked_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,true);
1364 else //We don't allow simply desactivating a slicer
1366 clicked_item->setData(column,Qt::CheckStateRole,2);
1370 //if we clicked on the vector(or overlay) and not the image
1373 if (clicked_item->data(column,Qt::CheckStateRole).toInt())
1375 current_row->setData(column,Qt::CheckStateRole,2);
1376 mSlicerManagers[i]->UpdateSlicer(column-1,2);
1377 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1378 DisplaySliders(i,column-1);
1380 int vis = clicked_item->data(column,Qt::CheckStateRole).toInt();
1381 std::string overlay_type = clicked_item->data(1,Qt::UserRole).toString().toStdString();
1382 int overlay_index=0;
1383 for (int child = 0; child < current_row->childCount(); child++)
1385 if (current_row->child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1387 if (current_row->child(child) == clicked_item) break;
1389 clicked_slicer->SetActorVisibility(
1390 clicked_item->data(1,Qt::UserRole).toString().toStdString(), overlay_index-1,vis);
1393 else if (current_row->data(column,Qt::CheckStateRole).toInt() > 0)
1395 current_row->setData(column,Qt::CheckStateRole,0);
1396 mSlicerManagers[i]->UpdateSlicer(column-1,0);
1397 std::map<std::string,int> overlay_counts;
1398 for (int child = 0; child < current_row->childCount(); child++)
1400 std::string overlay_type =
1401 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1402 overlay_counts[overlay_type]++;
1403 current_row->child(child)->setData(column,Qt::CheckStateRole,0);
1404 vvSlicer * current_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1405 current_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,false);
1408 //mSlicerManagers[i]->SetColorMap(-1);
1409 mSlicerManagers[i]->SetColorMap();
1411 mSlicerManagers[index]->GetSlicer(column-1)->Render();
1413 //------------------------------------------------------------------------------
1415 void vvMainWindow::InitSlicers()
1417 if (mSlicerManagers.size())
1419 mSlicerManagers.back()->GenerateDefaultLookupTable();
1421 mSlicerManagers.back()->SetSlicerWindow(0,NOViewWidget->GetRenderWindow());
1422 mSlicerManagers.back()->SetSlicerWindow(1,NEViewWidget->GetRenderWindow());
1423 mSlicerManagers.back()->SetSlicerWindow(2,SOViewWidget->GetRenderWindow());
1424 mSlicerManagers.back()->SetSlicerWindow(3,SEViewWidget->GetRenderWindow());
1428 //------------------------------------------------------------------------------
1429 void vvMainWindow::InitDisplay() {
1430 if (mSlicerManagers.size())
1432 //BE CAREFUL : this is absolutely necessary to set the interactor style
1433 //in order to have the same style instanciation for all SlicerManagers in
1435 for (int j = 0; j < 4; j++)
1437 vvInteractorStyleNavigator* style = vvInteractorStyleNavigator::New();
1438 style->SetAutoAdjustCameraClippingRange(1);
1439 bool AlreadySelected = false;
1440 for (int i = 0; i < DataTree->topLevelItemCount(); i++)
1442 mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
1444 //select the image only if previous are not selected
1445 if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1)
1447 mSlicerManagers[i]->UpdateSlicer(j,1);
1448 AlreadySelected = true;
1450 else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected)
1452 if (DataTree->selectedItems().size() == 0)
1453 DataTree->topLevelItem(i)->setSelected(1);
1454 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
1455 mSlicerManagers[i]->UpdateSlicer(j,1);
1456 DisplaySliders(i,j);
1460 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,0);
1461 mSlicerManagers[i]->UpdateSlicer(j,0);
1468 //------------------------------------------------------------------------------
1470 //------------------------------------------------------------------------------
1471 void vvMainWindow::DisplaySliders(int slicer, int window) {
1473 mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
1474 int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
1478 tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
1479 int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetTSlice();
1480 bool showHorizontal = false;
1481 bool showVertical = false;
1482 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1483 || (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 2
1484 && mSlicerManagers[slicer]->GetType() != IMAGEWITHTIME
1485 && mSlicerManagers[slicer]->GetType() != MERGEDWITHTIME))
1486 showVertical = true;
1487 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1488 || mSlicerManagers[slicer]->GetType() == IMAGEWITHTIME
1489 || mSlicerManagers[slicer]->GetType() == MERGEDWITHTIME)
1490 showHorizontal = true;
1493 verticalSliders[window]->show();
1495 verticalSliders[window]->hide();
1496 verticalSliders[window]->setRange(range[0],range[1]);
1497 verticalSliders[window]->setValue(position);
1500 horizontalSliders[window]->show();
1502 horizontalSliders[window]->hide();
1503 horizontalSliders[window]->setRange(tRange[0],tRange[1]);
1504 horizontalSliders[window]->setValue(tPosition);
1506 //------------------------------------------------------------------------------
1508 //------------------------------------------------------------------------------
1509 void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column) {
1510 int index = GetSlicerIndexFromItem(item);
1512 if (DataTree->topLevelItem(index) != item)
1514 QString warning = "Do you really want to close the overlay : ";
1515 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1516 QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
1518 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1519 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1520 if (msgBox.exec() == QMessageBox::AcceptRole)
1522 std::string overlay_type=item->data(1,Qt::UserRole).toString().toStdString();
1523 int overlay_index=0;
1524 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1526 if (DataTree->topLevelItem(index)->\
1527 child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1529 if (DataTree->topLevelItem(index)->child(child) == item) break;
1531 mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
1532 mSlicerManagers[index]->SetColorMap(0);
1533 DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
1534 mSlicerManagers[index]->Render();
1537 else if (DataTree->topLevelItemCount() <= 1)
1539 QString warning = "Do you really want to close the image : ";
1540 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1541 warning += "\nThis is the last image, you're about to close vv !!!";
1542 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1544 msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
1545 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1546 if (msgBox.exec() == QMessageBox::AcceptRole)
1553 QString warning = "Do you really want to close the image : ";
1554 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1555 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1557 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1558 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1559 if (msgBox.exec() == QMessageBox::AcceptRole)
1562 // Tell tools that we close an image
1563 emit AnImageIsBeingClosed(mSlicerManagers[index]);
1565 std::vector<vvSlicerManager*>::iterator Manageriter = mSlicerManagers.begin();
1566 DataTree->takeTopLevelItem(index);
1567 for (int i = 0; i < index; i++)
1571 linkPanel->removeImage(index);
1572 mSlicerManagers[index]->RemoveActors();
1573 delete mSlicerManagers[index];
1574 mSlicerManagers.erase(Manageriter);
1581 //------------------------------------------------------------------------------
1583 //------------------------------------------------------------------------------
1584 void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column) {
1585 // int index = GetSlicerIndexFromItem(item);
1586 // QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1587 // if (item->data(1,Qt::UserRole).toString() == "vector")
1588 // mSlicerManagers[index]->ReloadVF();
1590 // mSlicerManagers[index]->Reload();
1592 // QApplication::restoreOverrideCursor();
1593 int index = GetSlicerIndexFromItem(item);
1594 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1595 QString role=item->data(1,Qt::UserRole).toString();
1596 if ( role == "vector")
1597 mSlicerManagers[index]->ReloadVF();
1598 else if (role == "overlay")
1599 mSlicerManagers[index]->ReloadOverlay();
1600 else if (role == "fusion")
1601 mSlicerManagers[index]->ReloadFusion();
1603 mSlicerManagers[index]->Reload();
1605 // Update view and info
1607 mSlicerManagers[index]->Render();
1608 QApplication::restoreOverrideCursor();
1610 //------------------------------------------------------------------------------
1612 // void vvMainWindow::CropImage()
1614 // int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1615 // vvCropDialog crop(mSlicerManagers,index);
1617 // AddImage(crop.GetOutput(),"cropped.mhd");
1620 //------------------------------------------------------------------------------
1621 void vvMainWindow::SplitImage() {
1622 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1623 int dim = mSlicerManagers[index]->GetDimension();
1624 QString warning = "Do you really want to split the ";
1625 warning += QString::number(dim) + "D image ";
1626 warning += DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString() + " into ";
1627 warning += QString::number(mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetSize()[dim-1]) + " ";
1628 warning += QString::number(dim-1) + "D images.";
1629 QMessageBox msgBox(QMessageBox::Warning, tr("Split Image"),
1631 msgBox.addButton(tr("Split"), QMessageBox::AcceptRole);
1632 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1633 if (msgBox.exec() == QMessageBox::AcceptRole)
1635 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1638 std::string filename = DataTree->selectedItems()[0]->data(0,Qt::UserRole).toString().toStdString();
1639 int numberOfSlice = mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetSize()[dim-1];
1640 std::string path = itksys::SystemTools::GetFilenamePath(
1643 path += DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString().toStdString();
1645 path += itksys::SystemTools::GetFilenameLastExtension(
1648 typedef itk::NumericSeriesFileNames NameGeneratorType;
1649 NameGeneratorType::Pointer nameGenerator = NameGeneratorType::New();
1650 nameGenerator->SetSeriesFormat(path.c_str());
1651 nameGenerator->SetStartIndex(0);
1652 nameGenerator->SetEndIndex(numberOfSlice-1);
1653 nameGenerator->SetIncrementIndex(1);
1655 for (int i = 0; i < numberOfSlice; i++)
1657 vvSlicerManager* imageManager = new vvSlicerManager(4);
1658 imageManager->SetExtractedImage(nameGenerator->GetFileNames()[i],
1659 mSlicerManagers[index]->GetSlicer(0)->GetImage(), i);
1660 mSlicerManagers.push_back(imageManager);
1662 //create an item in the tree with good settings
1663 QTreeWidgetItem *item = new QTreeWidgetItem();
1664 item->setData(0,Qt::UserRole,nameGenerator->GetFileNames()[i].c_str());
1665 std::string fileI = itksys::SystemTools::GetFilenameWithoutLastExtension(
1666 nameGenerator->GetFileNames()[i]).c_str();
1667 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileI.c_str());
1668 for (int j = 1; j <= 4; j++)
1670 for (int i = 0; i < DataTree->topLevelItemCount(); i++)
1672 DataTree->topLevelItem(i)->setData(j,Qt::CheckStateRole,0);
1674 item->setData(j,Qt::CheckStateRole,2);
1677 //Create the buttons for reload and close
1678 QTreePushButton* cButton = new QTreePushButton;
1679 cButton->setItem(item);
1680 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1681 cButton->setToolTip(tr("close image"));
1682 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1683 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1684 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1686 QTreePushButton* rButton = new QTreePushButton;
1687 rButton->setItem(item);
1688 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1689 rButton->setToolTip(tr("reload image"));
1690 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1691 rButton->setEnabled(false);
1692 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1693 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1695 DataTree->addTopLevelItem(item);
1696 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1697 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1699 //set the id of the image
1700 QString id = nameGenerator->GetFileNames()[i].c_str() + QString::number(mSlicerManagers.size()-1);
1701 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1702 mSlicerManagers.back()->SetId(id.toStdString());
1703 linkPanel->addImage(fileI, id.toStdString());
1704 connect(mSlicerManagers.back(),SIGNAL(currentImageChanged(std::string)),
1705 this,SLOT(CurrentImageChanged(std::string)));
1706 connect(mSlicerManagers.back(),SIGNAL(
1707 UpdatePosition(int, double, double, double, double, double, double, double)),this,
1708 SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
1709 connect(mSlicerManagers.back(),SIGNAL(UpdateVector(int, double, double, double, double)),
1710 this, SLOT(VectorChanged(int,double,double,double, double)));
1711 connect(mSlicerManagers.back(),SIGNAL(UpdateOverlay(int, double, double)),
1712 this, SLOT(OverlayChanged(int,double,double)));
1713 connect(mSlicerManagers.back(),SIGNAL(UpdateFusion(int, double)),
1714 this, SLOT(FusionChanged(int,double)));
1715 connect(mSlicerManagers.back(),SIGNAL(UpdateWindows(int, int, int)),
1716 this,SLOT(WindowsChanged(int, int, int)));
1717 connect(mSlicerManagers.back(),SIGNAL(WindowLevelChanged(double, double,int, int)),
1718 this,SLOT(WindowLevelChanged(double, double, int, int)));
1719 connect(mSlicerManagers.back(),SIGNAL(UpdateSlice(int,int)),
1720 this,SLOT(UpdateSlice(int,int)));
1721 connect(mSlicerManagers.back(),SIGNAL(UpdateTSlice(int, int)),
1722 this,SLOT(UpdateTSlice(int, int)));
1723 connect(mSlicerManagers.back(),SIGNAL(UpdateSliceRange(int,int,int,int,int)),
1724 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
1725 connect(mSlicerManagers.back(),SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
1726 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
1727 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
1729 qApp->processEvents();
1732 qApp->processEvents();
1734 QApplication::restoreOverrideCursor();
1738 QApplication::restoreOverrideCursor();
1739 QString error = "Cannot split file (dimensions must be greater than 2) ";
1740 QMessageBox::information(this,tr("Splitting problem"),error);
1744 //------------------------------------------------------------------------------
1746 //------------------------------------------------------------------------------
1747 void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value) {
1748 infoPanel->setCurrentInfo(visibility,x,y,z,X,Y,Z,value);
1750 //------------------------------------------------------------------------------
1752 //------------------------------------------------------------------------------
1753 void vvMainWindow::VectorChanged(int visibility,double x, double y, double z, double value) {
1754 overlayPanel->getCurrentVectorInfo(visibility,x,y,z,value);
1756 //------------------------------------------------------------------------------
1758 //------------------------------------------------------------------------------
1759 void vvMainWindow::OverlayChanged(int visibility, double valueOver, double valueRef) {
1760 overlayPanel->getCurrentOverlayInfo(visibility,valueOver, valueRef);
1762 //------------------------------------------------------------------------------
1764 //------------------------------------------------------------------------------
1765 void vvMainWindow::FusionChanged(int visibility, double value) {
1766 overlayPanel->getCurrentFusionInfo(visibility,value);
1768 //------------------------------------------------------------------------------
1770 //------------------------------------------------------------------------------
1771 void vvMainWindow::WindowsChanged(int window, int view, int slice) {
1772 infoPanel->setViews(window, view, slice);
1774 //------------------------------------------------------------------------------
1776 //------------------------------------------------------------------------------
1777 void vvMainWindow::WindowLevelChanged(double window, double level,int preset,int colormap) {
1778 windowSpinBox->setValue(window);
1779 levelSpinBox->setValue(level);
1780 colorMapComboBox->setCurrentIndex(colormap);
1781 presetComboBox->setCurrentIndex(preset);
1783 //------------------------------------------------------------------------------
1785 //------------------------------------------------------------------------------
1786 void vvMainWindow::WindowLevelEdited() {
1787 presetComboBox->setCurrentIndex(6);
1788 UpdateWindowLevel();
1790 //------------------------------------------------------------------------------
1792 //------------------------------------------------------------------------------
1793 void vvMainWindow::UpdateWindowLevel() {
1794 if (DataTree->selectedItems().size())
1796 if (presetComboBox->currentIndex() == 7) //For ventilation
1797 colorMapComboBox->setCurrentIndex(5);
1798 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1799 mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
1800 mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
1801 mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
1802 mSlicerManagers[index]->Render();
1805 //------------------------------------------------------------------------------
1807 //------------------------------------------------------------------------------
1808 void vvMainWindow::UpdateColorMap() {
1809 if (DataTree->selectedItems().size())
1811 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1812 mSlicerManagers[index]->SetColorMap(colorMapComboBox->currentIndex());
1813 mSlicerManagers[index]->Render();
1816 //------------------------------------------------------------------------------
1817 void vvMainWindow::SwitchWindowLevel() {
1818 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1819 int window = mSlicerManagers[index]->GetColorWindow();
1820 presetComboBox->setCurrentIndex(6);
1821 windowSpinBox->setValue(-window);
1822 UpdateWindowLevel();
1824 //------------------------------------------------------------------------------
1826 //------------------------------------------------------------------------------
1827 void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps) {
1828 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
1830 if (mSlicerManagers[i]->GetId() == id)
1832 //mSlicerManagers[i]->SetTSlice(temps);
1833 mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
1834 mSlicerManagers[i]->UpdateViews(0,slicer);
1839 //------------------------------------------------------------------------------
1841 //------------------------------------------------------------------------------
1842 void vvMainWindow::ShowContextMenu(QPoint point) {
1843 if (!DataTree->selectedItems().size())
1845 contextActions[1]->setEnabled(0);
1846 contextActions[2]->setEnabled(0);
1847 contextActions[3]->setEnabled(0);
1848 contextActions[4]->setEnabled(0);
1849 contextActions[5]->setEnabled(0);
1850 contextActions[6]->setEnabled(0);
1851 contextActions[7]->setEnabled(0);
1855 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1856 contextActions[1]->setEnabled(1);
1857 contextActions[2]->setEnabled(
1858 DataTree->itemWidget(DataTree->selectedItems()[0],
1859 COLUMN_RELOAD_IMAGE)->isEnabled());
1860 contextActions[3]->setEnabled(1);
1861 contextActions[5]->setEnabled(1);
1862 contextActions[6]->setEnabled(1);
1863 contextActions[7]->setEnabled(1);
1865 if (mSlicerManagers[index]->GetDimension() < 3)
1866 contextActions[4]->setEnabled(0);
1868 contextActions[4]->setEnabled(1);
1870 contextMenu.exec(QCursor::pos());
1872 //------------------------------------------------------------------------------
1874 //------------------------------------------------------------------------------
1875 void vvMainWindow::CloseImage() {
1876 CloseImage(DataTree->selectedItems()[0],0);
1878 //------------------------------------------------------------------------------
1880 //------------------------------------------------------------------------------
1881 void vvMainWindow::ReloadImage() {
1882 ReloadImage(DataTree->selectedItems()[0],0);
1884 //------------------------------------------------------------------------------
1886 //------------------------------------------------------------------------------
1887 void vvMainWindow::SelectOverlayImage() {
1888 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1890 //check if one overlay image is added
1891 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1892 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay")
1894 QString error = "Cannot add more than one compared image\n";
1895 error += "Please remove first ";
1896 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1897 QMessageBox::information(this,tr("Problem adding compared image !"),error);
1901 QString Extensions = EXTENSIONS;
1902 Extensions += ";;All Files (*)";
1903 QString file = QFileDialog::getOpenFileName(this,tr("Load Overlay image"),mInputPathName,Extensions);
1904 if (!file.isEmpty())
1905 AddOverlayImage(index,file);
1907 //------------------------------------------------------------------------------
1909 //------------------------------------------------------------------------------
1910 void vvMainWindow::AddOverlayImage(int index, QString file) {
1912 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1913 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1914 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1915 reader->SetFileName(file.toStdString().c_str());
1916 reader->ReadImageInformation();
1917 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1918 int dimension = reader->GetNumberOfDimensions();
1919 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1920 vvProgressDialog progress("Opening " + file.toStdString());
1921 qApp->processEvents();
1923 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1924 if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component))
1926 //create an item in the tree with good settings
1927 QTreeWidgetItem *item = new QTreeWidgetItem();
1928 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1929 item->setData(1,Qt::UserRole,tr("overlay"));
1930 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
1931 qApp->processEvents();
1933 for (int j = 1; j <= 4; j++)
1935 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1936 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("overlay",0,
1937 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1940 //Create the buttons for reload and close
1941 qApp->processEvents();
1942 QTreePushButton* cButton = new QTreePushButton;
1943 cButton->setItem(item);
1944 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1945 cButton->setToolTip(tr("close image"));
1946 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1947 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1948 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1950 QTreePushButton* rButton = new QTreePushButton;
1951 rButton->setItem(item);
1952 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1953 rButton->setToolTip(tr("reload image"));
1954 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1955 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1956 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1958 DataTree->topLevelItem(index)->setExpanded(1);
1959 DataTree->topLevelItem(index)->addChild(item);
1960 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1961 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1963 //set the id of the image
1964 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1965 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1967 qApp->processEvents();
1969 QApplication::restoreOverrideCursor();
1973 QApplication::restoreOverrideCursor();
1974 QString error = "Cannot import the new image.\n";
1975 error += mSlicerManagers[index]->GetLastError().c_str();
1976 QMessageBox::information(this,tr("Problem reading image !"),error);
1980 void vvMainWindow::AddFusionImage()
1982 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1984 //check if one fusion image is added
1985 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1986 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion")
1988 QString error = "Cannot add more than one fusion image\n";
1989 error += "Please remove first ";
1990 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1991 QMessageBox::information(this,tr("Problem adding fusion image !"),error);
1995 QString Extensions = EXTENSIONS;
1996 Extensions += ";;All Files (*)";
1997 QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
1998 if (!file.isEmpty())
2000 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2001 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
2002 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
2003 reader->SetFileName(file.toStdString().c_str());
2004 reader->ReadImageInformation();
2005 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
2008 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2009 vvProgressDialog progress("Opening fusion");
2010 qApp->processEvents();
2012 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2013 if (mSlicerManagers[index]->SetFusion(file.toStdString(),
2014 reader->GetNumberOfDimensions(), component))
2016 //create an item in the tree with good settings
2017 QTreeWidgetItem *item = new QTreeWidgetItem();
2018 item->setData(0,Qt::UserRole,file.toStdString().c_str());
2019 item->setData(1,Qt::UserRole,tr("fusion"));
2020 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
2021 qApp->processEvents();
2023 for (int j = 1; j <= 4; j++)
2025 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2026 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0,
2027 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
2030 //Create the buttons for reload and close
2031 qApp->processEvents();
2032 QTreePushButton* cButton = new QTreePushButton;
2033 cButton->setItem(item);
2034 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2035 cButton->setToolTip(tr("close image"));
2036 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2037 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2038 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2040 QTreePushButton* rButton = new QTreePushButton;
2041 rButton->setItem(item);
2042 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2043 rButton->setToolTip(tr("reload image"));
2044 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2045 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2046 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2048 DataTree->topLevelItem(index)->setExpanded(1);
2049 DataTree->topLevelItem(index)->addChild(item);
2050 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2051 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2053 //set the id of the image
2054 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2055 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2057 qApp->processEvents();
2059 QApplication::restoreOverrideCursor();
2063 QApplication::restoreOverrideCursor();
2064 QString error = "Cannot import the new image.\n";
2065 error += mSlicerManagers[index]->GetLastError().c_str();
2066 QMessageBox::information(this,tr("Problem reading image !"),error);
2071 QString error = "Cannot import the new image.\n";
2072 QMessageBox::information(this,tr("Problem reading image !"),error);
2076 //------------------------------------------------------------------------------
2079 //------------------------------------------------------------------------------
2080 void vvMainWindow::OpenField()
2082 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2083 //check if a vector field has already been added
2084 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
2085 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector")
2087 QString error = "Cannot add more than one vector field\n";
2088 error += "Please remove first ";
2089 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
2090 QMessageBox::information(this,tr("Problem adding vector field!"),error);
2094 QString Extensions = "Images ( *.mhd)";
2095 Extensions += ";;Images ( *.vf)";
2096 QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
2097 if (!file.isEmpty())
2098 AddField(file,index);
2100 //------------------------------------------------------------------------------
2103 //------------------------------------------------------------------------------
2104 void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
2106 //create an item in the tree with good settings
2107 QTreeWidgetItem *item = new QTreeWidgetItem();
2108 item->setData(0,Qt::UserRole,filename.toStdString().c_str());
2109 item->setData(1,Qt::UserRole,tr("vector"));
2110 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename);
2111 qApp->processEvents();
2113 for (int j = 1; j <= 4; j++)
2115 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2116 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("vector",0,
2117 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
2120 //Create the buttons for reload and close
2121 qApp->processEvents();
2122 QTreePushButton* cButton = new QTreePushButton;
2123 cButton->setItem(item);
2124 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2125 cButton->setToolTip(tr("close vector field"));
2126 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2127 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2128 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2130 QTreePushButton* rButton = new QTreePushButton;
2131 rButton->setItem(item);
2132 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2133 rButton->setToolTip(tr("reload vector field"));
2134 rButton->setEnabled(from_disk);
2135 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2136 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2137 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2139 DataTree->topLevelItem(index)->setExpanded(1);
2140 DataTree->topLevelItem(index)->addChild(item);
2141 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2142 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2144 //set the id of the image
2145 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2146 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2148 qApp->processEvents();
2150 QApplication::restoreOverrideCursor();
2152 //------------------------------------------------------------------------------
2155 //------------------------------------------------------------------------------
2156 void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
2158 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2159 vvSlicerManager* imageManager = mSlicerManagers[index];
2160 if (imageManager->SetVF(vf,file.toStdString()))
2162 AddFieldEntry(file,index,false);
2166 QString error = "Cannot import the vector field for this image.\n";
2167 error += imageManager->GetLastError().c_str();
2168 QMessageBox::information(this,tr("Problem reading VF !"),error);
2170 QApplication::restoreOverrideCursor();
2172 //------------------------------------------------------------------------------
2175 //------------------------------------------------------------------------------
2176 void vvMainWindow::AddField(QString file,int index)
2178 if (QFile::exists(file))
2180 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2182 //init the progress events
2183 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2184 vvProgressDialog progress("Opening " + file.toStdString());
2185 qApp->processEvents();
2187 //read the vector and put it in the current mSlicerManager
2188 vvSlicerManager* imageManager = mSlicerManagers[index];
2189 qApp->processEvents();
2191 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2192 if (imageManager->SetVF(file.toStdString()))
2194 imageManager->Render();
2195 AddFieldEntry(file,index,true);
2199 QApplication::restoreOverrideCursor();
2200 QString error = "Cannot import the vector field for this image.\n";
2201 error += imageManager->GetLastError().c_str();
2202 QMessageBox::information(this,tr("Problem reading VF !"),error);
2206 QMessageBox::information(this,tr("Problem reading VF !"),"File doesn't exist!");
2209 //------------------------------------------------------------------------------
2212 //------------------------------------------------------------------------------
2213 void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width) {
2214 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2215 if (mSlicerManagers[index]->GetSlicer(0)->GetVF())
2217 for (int i = 0; i < 4; i++)
2219 mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
2220 mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
2221 mSlicerManagers[index]->GetSlicer(i)->SetVFWidth(width);
2223 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
2225 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(0);
2229 //------------------------------------------------------------------------------
2232 //------------------------------------------------------------------------------
2233 void vvMainWindow::SetOverlayProperty(int color) {
2234 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2235 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay())
2237 mSlicerManagers[index]->SetOverlayColor(color);
2238 mSlicerManagers[index]->SetColorMap(0);
2239 mSlicerManagers[index]->Render();
2242 //------------------------------------------------------------------------------
2244 //------------------------------------------------------------------------------
2245 void vvMainWindow::SetFusionProperty(int opacity, int colormap,double window, double level) {
2246 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2247 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion())
2249 mSlicerManagers[index]->SetFusionOpacity(opacity);
2250 mSlicerManagers[index]->SetFusionColorMap(colormap);
2251 mSlicerManagers[index]->SetFusionWindow(window);
2252 mSlicerManagers[index]->SetFusionLevel(level);
2253 mSlicerManagers[index]->SetColorMap(0);
2254 mSlicerManagers[index]->Render();
2257 //------------------------------------------------------------------------------
2259 //------------------------------------------------------------------------------
2260 void vvMainWindow::SaveAs() {
2261 if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector")
2263 QMessageBox::warning(this,tr("Unsupported type"),tr("Sorry, saving a vector field is unsupported for the moment"));
2267 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2268 int dimension = mSlicerManagers[index]->GetDimension();
2269 QStringList OutputListeFormat;
2270 OutputListeFormat.clear();
2273 OutputListeFormat.push_back(".mhd");
2277 OutputListeFormat.push_back(".bmp");
2278 OutputListeFormat.push_back(".png");
2279 OutputListeFormat.push_back(".jpeg");
2280 OutputListeFormat.push_back(".tif");
2281 OutputListeFormat.push_back(".mhd");
2282 OutputListeFormat.push_back(".hdr");
2283 OutputListeFormat.push_back(".vox");
2285 else if (dimension == 3)
2287 OutputListeFormat.push_back(".mhd");
2288 OutputListeFormat.push_back(".hdr");
2289 OutputListeFormat.push_back(".vox");
2291 else if (dimension == 4)
2293 OutputListeFormat.push_back(".mhd");
2295 QString Extensions = "AllFiles(*.*)";
2296 for (int i = 0; i < OutputListeFormat.count(); i++)
2298 Extensions += ";;Images ( *";
2299 Extensions += OutputListeFormat[i];
2302 QString fileName = QFileDialog::getSaveFileName(this,
2304 mSlicerManagers[index]->GetFileName().c_str(),
2306 if (!fileName.isEmpty())
2308 std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
2309 if (OutputListeFormat.contains(
2310 fileformat.c_str()))
2312 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2313 std::string action = "Saving";
2314 vvProgressDialog progress("Saving "+fileName.toStdString());
2315 qApp->processEvents();
2316 vvImageWriter *writer = new vvImageWriter;
2317 writer->SetOutputFileName(fileName.toStdString());
2318 writer->SetInput(mSlicerManagers[index]->GetImage());
2320 QApplication::restoreOverrideCursor();
2321 if (writer->GetLastError().size())
2323 QString error = "Saving did not succeed\n";
2324 error += writer->GetLastError().c_str();
2325 QMessageBox::information(this,tr("Saving Problem"),error);
2331 QString error = fileformat.c_str();
2332 if (error.isEmpty())
2333 error += "no file format specified !";
2335 error += " format unknown !!!\n";
2336 QMessageBox::information(this,tr("Saving Problem"),error);
2341 //------------------------------------------------------------------------------
2343 //------------------------------------------------------------------------------
2344 void vvMainWindow::AddLink(QString image1,QString image2) {
2345 for (unsigned int i = 0; i < mSlicerManagers.size();i++)
2347 if (image1.toStdString() == mSlicerManagers[i]->GetId())
2349 mSlicerManagers[i]->AddLink(image2.toStdString());
2351 if (image2.toStdString() == mSlicerManagers[i]->GetId())
2353 mSlicerManagers[i]->AddLink(image1.toStdString());
2357 //------------------------------------------------------------------------------
2359 //------------------------------------------------------------------------------
2360 void vvMainWindow::RemoveLink(QString image1,QString image2) {
2361 for (unsigned int i = 0; i < mSlicerManagers.size();i++)
2363 if (image1.toStdString() == mSlicerManagers[i]->GetId())
2365 mSlicerManagers[i]->RemoveLink(image2.toStdString());
2367 if (image2.toStdString() == mSlicerManagers[i]->GetId())
2369 mSlicerManagers[i]->RemoveLink(image1.toStdString());
2373 //------------------------------------------------------------------------------
2375 //------------------------------------------------------------------------------
2376 void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset)
2379 while(sm != mSlicerManagers[index])
2381 index = (index+offset) % mSlicerManagers.size();
2383 QTreeWidgetItem* item = GetItemFromSlicerManager(mSlicerManagers[index]);
2384 //CurrentImageChanged(mSlicerManagers[index]->GetId()); //select new image
2385 item->setData(slicer+1,Qt::CheckStateRole,2); //change checkbox
2386 DisplayChanged(item,slicer+1);
2388 //------------------------------------------------------------------------------
2390 void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
2392 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
2394 if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1)
2396 for (int j = 0; j < 4; j++)
2398 mSlicerManagers[i]->SetTSliceInSlicer(value,j);
2399 //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
2400 //UpdateTSlice(j,value);
2402 mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
2407 //------------------------------------------------------------------------------
2410 //------------------------------------------------------------------------------
2411 void vvMainWindow::NOHorizontalSliderMoved() {
2412 // if (mCurrentTime == NOHorizontalSlider->value()) return;
2413 HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
2414 // mCurrentTime = NOHorizontalSlider->value();
2416 //------------------------------------------------------------------------------
2419 //------------------------------------------------------------------------------
2420 void vvMainWindow::NEHorizontalSliderMoved() {
2421 // if (mCurrentTime == NEHorizontalSlider->value()) return;
2422 HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
2423 // mCurrentTime = NEHorizontalSlider->value();
2425 //------------------------------------------------------------------------------
2428 //------------------------------------------------------------------------------
2429 void vvMainWindow::SOHorizontalSliderMoved() {
2430 // if (mCurrentTime == SOHorizontalSlider->value()) return;
2431 HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
2432 // mCurrentTime = SOHorizontalSlider->value();
2434 //------------------------------------------------------------------------------
2437 //------------------------------------------------------------------------------
2438 void vvMainWindow::SEHorizontalSliderMoved() {
2439 // if (mCurrentTime == SEHorizontalSlider->value()) return;
2440 HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
2441 // mCurrentTime = SEHorizontalSlider->value();
2443 //------------------------------------------------------------------------------
2445 //------------------------------------------------------------------------------
2446 void vvMainWindow::NOVerticalSliderChanged() {
2447 int value = NOVerticalSlider->value();
2448 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
2450 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
2452 mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
2453 mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
2454 mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
2455 mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2460 //------------------------------------------------------------------------------
2463 //------------------------------------------------------------------------------
2464 void vvMainWindow::NEVerticalSliderChanged() {
2465 int value = NEVerticalSlider->value();
2466 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
2468 if (DataTree->topLevelItem(i)->data(COLUMN_UR_VIEW,Qt::CheckStateRole).toInt() > 1)
2470 mSlicerManagers[i]->GetSlicer(1)->SetSlice(value);
2471 mSlicerManagers[i]->VerticalSliderHasChanged(1, value);
2472 mSlicerManagers[i]->UpdateSlice(1);
2473 mSlicerManagers[i]->GetSlicer(1)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2478 //------------------------------------------------------------------------------
2481 //------------------------------------------------------------------------------
2482 void vvMainWindow::SOVerticalSliderChanged() {
2483 int value = SOVerticalSlider->value();
2484 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
2486 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
2488 mSlicerManagers[i]->GetSlicer(2)->SetSlice(value);
2489 mSlicerManagers[i]->VerticalSliderHasChanged(2, value);
2490 mSlicerManagers[i]->UpdateSlice(2);
2491 mSlicerManagers[i]->GetSlicer(2)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2496 //------------------------------------------------------------------------------
2499 //------------------------------------------------------------------------------
2500 void vvMainWindow::SEVerticalSliderChanged() {
2501 int value = SEVerticalSlider->value();
2502 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
2504 if (DataTree->topLevelItem(i)->data(COLUMN_DR_VIEW,Qt::CheckStateRole).toInt() > 1)
2506 mSlicerManagers[i]->GetSlicer(3)->SetSlice(value);
2507 mSlicerManagers[i]->VerticalSliderHasChanged(3, value);
2508 mSlicerManagers[i]->UpdateSlice(3);
2509 mSlicerManagers[i]->GetSlicer(3)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2514 //------------------------------------------------------------------------------
2517 //------------------------------------------------------------------------------
2518 void vvMainWindow::UpdateSlice(int slicer, int slice) {
2520 if (slice != NOVerticalSlider->value())
2521 NOVerticalSlider->setValue(slice);
2523 else if (slicer == 1)
2524 NEVerticalSlider->setValue(slice);
2525 else if (slicer == 2)
2526 SOVerticalSlider->setValue(slice);
2527 else if (slicer == 3)
2528 SEVerticalSlider->setValue(slice);
2530 //------------------------------------------------------------------------------
2533 //------------------------------------------------------------------------------
2534 void vvMainWindow::UpdateTSlice(int slicer, int slice) {
2538 NOHorizontalSlider->setValue(slice);
2541 NEHorizontalSlider->setValue(slice);
2544 SOHorizontalSlider->setValue(slice);
2547 SEHorizontalSlider->setValue(slice);
2551 //------------------------------------------------------------------------------
2554 //------------------------------------------------------------------------------
2555 void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax) {
2556 int position = int((min+max)/2);
2557 int tPosition = int((tmin+tmax)/2);
2560 NOVerticalSlider->setValue(position);
2561 NOVerticalSlider->setRange(min,max);
2562 NOHorizontalSlider->setRange(tmin,tmax);
2563 NOHorizontalSlider->setValue(tPosition);
2565 else if (slicer == 1)
2567 NEVerticalSlider->setValue(position);
2568 NEVerticalSlider->setRange(min,max);
2569 NEHorizontalSlider->setRange(tmin,tmax);
2570 NEHorizontalSlider->setValue(tPosition);
2572 else if (slicer == 2)
2574 SOVerticalSlider->setValue(position);
2575 SOVerticalSlider->setRange(min,max);
2576 SOHorizontalSlider->setRange(tmin,tmax);
2577 SOHorizontalSlider->setValue(tPosition);
2579 else if (slicer == 3)
2581 SEVerticalSlider->setValue(position);
2582 SEVerticalSlider->setRange(min,max);
2583 SEHorizontalSlider->setRange(tmin,tmax);
2584 SEHorizontalSlider->setValue(tPosition);
2587 //------------------------------------------------------------------------------
2590 //------------------------------------------------------------------------------
2591 void vvMainWindow::SaveNOScreenshot() {
2592 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2593 w2i->SetInput(NOViewWidget->GetRenderWindow());
2595 SaveScreenshot(w2i->GetOutput());
2598 //------------------------------------------------------------------------------
2601 //------------------------------------------------------------------------------
2602 void vvMainWindow::SaveNEScreenshot() {
2603 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2604 w2i->SetInput(NEViewWidget->GetRenderWindow());
2606 SaveScreenshot(w2i->GetOutput());
2609 //------------------------------------------------------------------------------
2612 //------------------------------------------------------------------------------
2613 void vvMainWindow::SaveSOScreenshot() {
2614 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2615 w2i->SetInput(SOViewWidget->GetRenderWindow());
2617 SaveScreenshot(w2i->GetOutput());
2620 //------------------------------------------------------------------------------
2623 //------------------------------------------------------------------------------
2624 void vvMainWindow::SaveSEScreenshot() {
2625 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2626 w2i->SetInput(SEViewWidget->GetRenderWindow());
2628 SaveScreenshot(w2i->GetOutput());
2631 //------------------------------------------------------------------------------
2634 //------------------------------------------------------------------------------
2635 void vvMainWindow::SaveScreenshot(vtkImageData* image) {
2636 QString Extensions = "Images( *.png);;";
2637 Extensions += "Images( *.jpg);;";
2638 Extensions += "Images( *.bmp);;";
2639 Extensions += "Images( *.tif);;";
2640 Extensions += "Images( *.ppm)";
2641 QString fileName = QFileDialog::getSaveFileName(this,
2643 itksys::SystemTools::GetFilenamePath(
2644 mSlicerManagers[0]->GetFileName()).c_str(),
2646 if (!fileName.isEmpty())
2648 const char *ext = fileName.toStdString().c_str() + strlen(fileName.toStdString().c_str()) - 4;
2649 if (!strcmp(ext, ".bmp"))
2651 vtkBMPWriter *bmp = vtkBMPWriter::New();
2652 bmp->SetInput(image);
2653 bmp->SetFileName(fileName.toStdString().c_str());
2657 else if (!strcmp(ext, ".tif"))
2659 vtkTIFFWriter *tif = vtkTIFFWriter::New();
2660 tif->SetInput(image);
2661 tif->SetFileName(fileName.toStdString().c_str());
2665 else if (!strcmp(ext, ".ppm"))
2667 vtkPNMWriter *pnm = vtkPNMWriter::New();
2668 pnm->SetInput(image);
2669 pnm->SetFileName(fileName.toStdString().c_str());
2673 else if (!strcmp(ext, ".png"))
2675 vtkPNGWriter *png = vtkPNGWriter::New();
2676 png->SetInput(image);
2677 png->SetFileName(fileName.toStdString().c_str());
2681 else if (!strcmp(ext, ".jpg"))
2683 vtkJPEGWriter *jpg = vtkJPEGWriter::New();
2684 jpg->SetInput(image);
2685 jpg->SetFileName(fileName.toStdString().c_str());
2691 QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
2696 //------------------------------------------------------------------------------
2699 //------------------------------------------------------------------------------
2700 void vvMainWindow::GoToCursor() {
2701 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2702 for (int column = 1; column < 5; column++)
2704 if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1)
2706 double* cursorPos = mSlicerManagers[index]->GetSlicer(column-1)->GetCursorPosition();
2707 mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
2708 cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
2709 mSlicerManagers[index]->UpdateViews(1,column-1);
2710 mSlicerManagers[index]->UpdateLinked(column-1);
2715 //------------------------------------------------------------------------------
2717 //------------------------------------------------------------------------------
2718 void vvMainWindow::PlayPause() {
2722 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_play.png")));
2728 int image_number=DataTree->topLevelItemCount();
2730 for (int i=0;i<image_number;i++)
2731 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1)
2739 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
2740 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2744 //------------------------------------------------------------------------------
2746 //------------------------------------------------------------------------------
2747 void vvMainWindow::PlayNext() {
2748 if (playMode && !this->isHidden())
2750 int image_number=DataTree->topLevelItemCount();
2751 ///Only play one slicer per SM, and only if the SM is being displayed
2752 for (int i=0;i<image_number;i++)
2753 for (int j=0;j<4;j++)
2754 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1 &&
2755 DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0)
2757 mSlicerManagers[i]->SetNextTSlice(j);
2760 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2763 //------------------------------------------------------------------------------
2765 void vvMainWindow::ShowLastImage()
2767 if (mSlicerManagers.size() > 1)
2769 QTreeWidgetItem * item=DataTree->topLevelItem(DataTree->topLevelItemCount()-1);
2770 CurrentImageChanged(mSlicerManagers.back()->GetId()); //select new image
2771 item->setData(1,Qt::CheckStateRole,2); //show the new image in the first panel
2772 DisplayChanged(item,1);
2776 //------------------------------------------------------------------------------
2777 void vvMainWindow::UpdateRenderWindows() {
2778 if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
2779 if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
2780 if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
2781 if (SEViewWidget->GetRenderWindow()) SEViewWidget->GetRenderWindow()->Render();
2783 //------------------------------------------------------------------------------
2785 //------------------------------------------------------------------------------
2786 void vvMainWindow::SegmentationOnCurrentImage() {
2787 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2789 vvSegmentationDialog segmentation;
2790 segmentation.SetImage(mSlicerManagers[index]->GetSlicer(0)->GetImage());
2791 segmentation.exec();
2793 //------------------------------------------------------------------------------
2795 void vvMainWindow::SurfaceViewerLaunch()
2797 vvSurfaceViewerDialog surfaceViewer;
2798 surfaceViewer.exec();
2801 //------------------------------------------------------------------------------
2802 void vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
2804 vvSlicerManager* slicer_manager = new vvSlicerManager(4);
2805 slicer_manager->SetImage(image);
2806 slicer_manager->SetFilename(filename);
2807 mSlicerManagers.push_back(slicer_manager);
2809 //create an item in the tree with good settings
2810 QTreeWidgetItem *item = new QTreeWidgetItem();
2811 item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
2812 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
2813 qApp->processEvents();
2815 for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1);
2817 //Create the buttons for reload and close
2818 qApp->processEvents();
2819 QTreePushButton* cButton = new QTreePushButton;
2820 cButton->setItem(item);
2821 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2822 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2823 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2824 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2826 QTreePushButton* rButton = new QTreePushButton;
2827 rButton->setItem(item);
2828 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2829 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2830 rButton->setEnabled(0);
2831 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2832 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2834 DataTree->addTopLevelItem(item);
2835 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2836 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2838 //set the id of the image
2839 QString id = slicer_manager->GetFileName().c_str() + QString::number(mSlicerManagers.size()-1);
2840 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2841 mSlicerManagers.back()->SetId(id.toStdString());
2843 linkPanel->addImage(filename, id.toStdString());
2845 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
2846 this, SLOT(CurrentImageChanged(std::string)));
2847 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
2848 this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
2849 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
2850 this, SLOT(VectorChanged(int,double,double,double, double)));
2851 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
2852 this, SLOT(OverlayChanged(int,double,double)));
2853 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
2854 this, SLOT(FusionChanged(int,double)));
2855 connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
2856 this,SLOT(WindowsChanged(int, int, int)));
2857 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
2858 this,SLOT(WindowLevelChanged(double, double, int, int)));
2859 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
2860 this,SLOT(UpdateSlice(int,int)));
2861 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
2862 this,SLOT(UpdateTSlice(int, int)));
2863 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
2864 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
2865 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
2866 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
2867 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
2868 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
2869 connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
2871 qApp->processEvents();
2875 qApp->processEvents();
2877 //------------------------------------------------------------------------------
2880 //------------------------------------------------------------------------------
2881 void vvMainWindow::UpdateCurrentSlicer() {
2883 if (DataTree->selectedItems().size() > 0) {
2884 index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2886 mSlicerManagerCurrentIndex = index;
2888 //------------------------------------------------------------------------------