1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://www.centreleonberard.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ===========================================================================**/
20 #include <QMessageBox>
21 #include <QInputDialog>
23 #include "QTreePushButton.h"
28 #include "vvMainWindow.h"
29 #include "vvHelpDialog.h"
30 #include "vvRegisterForm.h"
31 #include "vvDocumentation.h"
32 #include "vvProgressDialog.h"
33 #include "vvQDicomSeriesSelector.h"
34 #include "vvSlicerManager.h"
35 #include "clitkImageCommon.h"
37 #include "vvInteractorStyleNavigator.h"
38 #include "vvImageWriter.h"
39 #include "vvSegmentationDialog.h"
40 #include "vvSurfaceViewerDialog.h"
41 #include "vvDeformationDialog.h"
42 #include "vvImageWarp.h"
44 #include "vvMidPosition.h"
46 #include "vvStructSelector.h"
47 #include "vvMeshReader.h"
48 #include "clitkConfiguration.h"
52 #include <itkImageFileReader.h>
53 #include <itkByteSwapper.h>
54 #include <itkCommand.h>
55 #include <itkNumericSeriesFileNames.h>
58 #include <vtkImageData.h>
59 #include <vtkImageActor.h>
60 #include <vtkCornerAnnotation.h>
61 #include <vtkRenderWindow.h>
62 #include <vtkRenderWindowInteractor.h>
63 #include <vtkRenderer.h>
64 #include <vtkRendererCollection.h>
65 #include <vtkWindowToImageFilter.h>
66 #include <vtkBMPWriter.h>
67 #include <vtkTIFFWriter.h>
68 #include <vtkPNMWriter.h>
69 #include <vtkPNGWriter.h>
70 #include <vtkJPEGWriter.h>
71 #ifdef VTK_USE_FFMPEG_ENCODER
72 # include <vtkFFMPEGWriter.h>
74 #ifdef VTK_USE_MPEG2_ENCODER
75 # include <vtkMPEG2Writer.h>
77 #include <vtkMatrix4x4.h>
78 #include <vtkTransform.h>
86 #define COLUMN_UL_VIEW 1
87 #define COLUMN_UR_VIEW 2
88 #define COLUMN_DL_VIEW 3
89 #define COLUMN_DR_VIEW 4
90 #define COLUMN_CLOSE_IMAGE 5
91 #define COLUMN_RELOAD_IMAGE 6
92 #define COLUMN_IMAGE_NAME 7
94 #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN )"
97 0,Qt::UserRole full filename
98 1,Qt::CheckStateRole checkbutton UL View
99 1,Qt::UserRole overlay, fusion or vector
100 2,Qt::CheckStateRole checkbutton UR View
101 3,Qt::CheckStateRole checkbutton DL View
102 4,Qt::CheckStateRole checkbutton DR View
104 5,Qt::UserRole mSlicerManager id*/
106 //------------------------------------------------------------------------------
107 vvMainWindow::vvMainWindow():vvMainWindowBase()
109 setupUi(this); // this sets up the GUI
112 mMenuTools = menuTools;
113 // mMenuSegmentation = menuSegmentation;
114 mContextMenu = &contextMenu;
115 mMenuExperimentalTools = menuExperimental;
118 mCurrentSelectedImageId = "";
119 mCurrentPickedImageId = "";
120 mCurrentPickedImageIndex = 0;
122 //Init the contextMenu
123 this->setContextMenuPolicy(Qt::CustomContextMenu);
124 contextActions.resize(0);
125 QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
126 tr("O&pen new Image"));
127 actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
128 connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
129 contextActions.push_back(actionOpen_new_image);
130 contextMenu.addSeparator();
132 QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
133 tr("Close Current Image"));
134 connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
135 contextActions.push_back(actionClose_Image);
137 QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
138 tr("Reload Current Image"));
139 connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
140 contextActions.push_back(actionReload_image);
142 QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
143 tr("Save Current Image"));
144 connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
145 contextActions.push_back(actionSave_image);
147 contextMenu.addSeparator();
149 contextMenu.addAction(actionAdd_VF_to_current_Image);
150 contextActions.push_back(actionAdd_VF_to_current_Image);
152 QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
153 tr("Add overlay image to current image"));
154 contextMenu.addAction(actionAdd_Overlay_to_current_Image);
155 contextActions.push_back(actionAdd_Overlay_to_current_Image);
157 connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
159 contextMenu.addAction(actionAdd_fusion_image);
160 connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
161 contextActions.push_back(actionAdd_fusion_image);
163 contextMenu.addSeparator();
164 QAction* actionResetMatrix = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/identity.png")),
165 tr("Reset transformation to identity"));
166 connect(actionResetMatrix, SIGNAL(triggered()), this,SLOT(ResetTransformationToIdentity()));
170 QMenu * m = new QMenu(menubar);
172 // m->setObjectName(QString::fromUtf8("TOTOTO"));
173 contextMenu.addMenu(m);
174 QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
176 QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
180 connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
184 mSlicerManagers.resize(0);
194 header.append("Name");
196 DataTree->setHeaderLabels(header);
197 DataTree->resizeColumnToContents(COLUMN_TREE);
198 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
199 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
200 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
201 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
202 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
203 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
204 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
207 documentation = new vvDocumentation();
208 help_dialog = new vvHelpDialog();
209 dicomSeriesSelector = new vvDicomSeriesSelector();
211 inverseButton->setEnabled(0);
212 actionAdd_Overlay_to_current_Image->setEnabled(0);
213 actionSave_As->setEnabled(0);
214 actionAdd_VF_to_current_Image->setEnabled(0);
215 actionAdd_fusion_image->setEnabled(0);
218 verticalSliders.push_back(NOVerticalSlider);
219 verticalSliders.push_back(NEVerticalSlider);
220 verticalSliders.push_back(SOVerticalSlider);
221 verticalSliders.push_back(SEVerticalSlider);
223 for (int i =0; i < 4; i++)
224 verticalSliders[i]->hide();
226 horizontalSliders.push_back(NOHorizontalSlider);
227 horizontalSliders.push_back(NEHorizontalSlider);
228 horizontalSliders.push_back(SOHorizontalSlider);
229 horizontalSliders.push_back(SEHorizontalSlider);
231 for (int i =0; i < 4; i++)
232 horizontalSliders[i]->hide();
235 connect(NOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOVerticalSliderChanged()));
236 connect(NEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEVerticalSliderChanged()));
237 connect(SOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOVerticalSliderChanged()));
238 connect(SEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEVerticalSliderChanged()));
240 connect(NOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOHorizontalSliderMoved()));
241 connect(NEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEHorizontalSliderMoved()));
242 connect(SOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOHorizontalSliderMoved()));
243 connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved()));
246 connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition()));
247 connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration()));
248 connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
249 connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
250 connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
251 connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
252 connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
253 connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
254 connect(actionSlice_Image_As_Multiple_Images,SIGNAL(triggered()),this,SLOT(SliceImages()));
255 connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
256 connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
257 connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
258 connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
259 connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
260 connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
261 connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
262 connect(actionRegister_vv,SIGNAL(triggered()),this,SLOT(PopupRegisterForm()));
264 ///////////////////////////////////////////////
265 connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
266 connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
267 ///////////////////////////////////////////////
269 actionNorth_East_Window->setEnabled(0);
270 actionNorth_West_Window->setEnabled(0);
271 actionSouth_East_Window->setEnabled(0);
272 actionSouth_West_Window->setEnabled(0);
274 connect(actionNorth_East_Window,SIGNAL(triggered()),this,SLOT(SaveNEScreenshot()));
275 connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
276 connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
277 connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
278 connect(actionSave_all_slices,SIGNAL(triggered()),this,SLOT(SaveScreenshotAllSlices()));
280 connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
281 connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
282 SLOT(DisplayChanged(QTreeWidgetItem*, int)));
284 connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
285 connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
286 connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
287 connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
288 connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
289 connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
290 connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages()));
293 connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
295 connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
296 connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
297 connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double)));
298 connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int,int,double,double)),
299 this,SLOT(SetOverlayProperty(int,int,double,double)));
300 connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,int,double,double)),
301 this,SLOT(SetFusionProperty(int,int,int,double,double)));
302 connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
306 playButton->setEnabled(0);
307 frameRateLabel->setEnabled(0);
308 frameRateSpinBox->setEnabled(0);
309 connect(playButton, SIGNAL(clicked()),this,SLOT(PlayPause()));
310 connect(frameRateSpinBox, SIGNAL(valueChanged(int)),this,SLOT(ChangeFrameRate(int)));
312 goToCursorPushButton->setEnabled(0);
313 connect(goToCursorPushButton, SIGNAL(clicked()),this,SLOT(GoToCursor()));
315 NOViewWidget->hide();
316 NEViewWidget->hide();
317 SOViewWidget->hide();
318 SEViewWidget->hide();
320 //Recently opened files
321 std::list<std::string> recent_files = GetRecentlyOpenedImages();
322 recentlyOpenedFilesMenu=NULL;
323 if ( !recent_files.empty() ) {
324 createRecentlyOpenedFilesMenu();
325 updateRecentlyOpenedFilesMenu(recent_files);
328 // Adding all new tools (insertion in the menu)
329 vvToolManager::GetInstance()->InsertToolsInMenu(this);
330 vvToolManager::GetInstance()->EnableToolsInMenu(this, false);
332 if (!CLITK_EXPERIMENTAL)
333 menuExperimental->menuAction()->setVisible(false);
336 QTimer * timerMemory = new QTimer(this);
337 //timerMemory->setInterval(5);
338 connect(timerMemory, SIGNAL(timeout()), this, SLOT(UpdateMemoryUsage()));
339 timerMemory->start(2000);
341 //------------------------------------------------------------------------------
342 void vvMainWindow::show()
344 vvMainWindowBase::show();
345 PopupRegisterForm(true);
347 //------------------------------------------------------------------------------
348 void vvMainWindow::UpdateMemoryUsage()
350 // clitk::PrintMemory(true);
351 if (clitk::GetMemoryUsageInMb() == 0) infoPanel->setMemoryInMb("NA");
352 else infoPanel->setMemoryInMb(QString::number(clitk::GetMemoryUsageInMb())+" MiB");
354 //------------------------------------------------------------------------------
357 //------------------------------------------------------------------------------
358 void vvMainWindow::createRecentlyOpenedFilesMenu()
360 recentlyOpenedFilesMenu = new QMenu("Recently opened files...");
361 recentlyOpenedFilesMenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
362 menuFile->insertMenu(actionOpen_Image_With_Time,recentlyOpenedFilesMenu);
363 menuFile->insertSeparator(actionOpen_Image_With_Time);
365 //------------------------------------------------------------------------------
368 //------------------------------------------------------------------------------
370 void vvMainWindow::updateRecentlyOpenedFilesMenu(const std::list<std::string> &recent_files)
372 if(recentlyOpenedFilesMenu==NULL) {
373 createRecentlyOpenedFilesMenu();
375 recentlyOpenedFilesMenu->clear();
377 for (std::list<std::string>::const_iterator i = recent_files.begin(); i!=recent_files.end(); i++) {
378 QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")), i->c_str(),this);
379 recentlyOpenedFilesMenu->addAction(current);
380 connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage()));
383 //------------------------------------------------------------------------------
386 //------------------------------------------------------------------------------
387 void vvMainWindow::ComputeMidPosition()
390 int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
391 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
392 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
395 midp.slicer_manager = mSlicerManagers[index];
396 midp.reference_image_index = ref;
397 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
400 QMessageBox::warning(this, "Error computing midposition image",midp.error_message.c_str());
402 QFileInfo info(midp.slicer_manager->GetFileName().c_str());
403 AddImage(midp.output,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_midposition.mhd");
405 QApplication::restoreOverrideCursor();
408 //------------------------------------------------------------------------------
411 //------------------------------------------------------------------------------
412 void vvMainWindow::AddContour(int image_index, vvMesh::Pointer contour, bool propagation)
414 QTreeWidgetItem *item = new QTreeWidgetItem();
415 item->setData(0,Qt::UserRole,"filename.vtk");
416 item->setData(1,Qt::UserRole,tr("contour"));
418 brush.setColor(QColor(contour->r*255,contour->g*255,contour->b*255));
419 brush.setStyle(Qt::SolidPattern);
420 item->setData(COLUMN_IMAGE_NAME,Qt::BackgroundRole,brush);
421 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
423 for (int j = 1; j <= 4; j++)
424 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(image_index)->data(j,Qt::CheckStateRole));
426 QTreePushButton* cButton = new QTreePushButton;
427 cButton->setItem(item);
428 cButton->setColumn(COLUMN_CLOSE_IMAGE);
429 cButton->setToolTip(tr("close image"));
430 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
431 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
432 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
434 QTreePushButton* rButton = new QTreePushButton;
435 rButton->setItem(item);
436 rButton->setColumn(COLUMN_RELOAD_IMAGE);
437 rButton->setToolTip(tr("reload image"));
438 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
439 rButton->setEnabled(false);
441 //connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
442 //this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
444 DataTree->topLevelItem(image_index)->setExpanded(1);
445 DataTree->topLevelItem(image_index)->addChild(item);
446 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
447 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
448 QString id = DataTree->topLevelItem(image_index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
449 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
452 mSlicerManagers[image_index]->AddContour(contour,propagation);
453 mSlicerManagers[image_index]->Render();
455 //------------------------------------------------------------------------------
458 //------------------------------------------------------------------------------
459 void vvMainWindow::OpenVTKContour()
461 if (mSlicerManagers.size() > 0) {
462 QString Extensions = "Images ( *.vtk *.obj)";
463 Extensions += ";;All Files (*)";
464 QString file = QFileDialog::getOpenFileName(this,tr("Open vtkPolyData"),mInputPathName,Extensions);
467 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
468 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
470 reader.SetImage(mSlicerManagers[index]->GetImage());
471 reader.SetModeToVTK();
472 reader.SetFilename(file.toStdString());
474 AddContour(index,reader.GetOutput()[0],false);
475 QApplication::restoreOverrideCursor();
478 //------------------------------------------------------------------------------
481 //------------------------------------------------------------------------------
482 void vvMainWindow::OpenDCStructContour()
484 if (mSlicerManagers.size() > 0) {
485 QString Extensions = "Dicom Files ( *.dcm RS*)";
486 Extensions += ";;All Files (*)";
487 QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
490 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
492 reader.SetFilename(file.toStdString());
493 vvStructSelector selector;
494 selector.SetStructures(reader.GetROINames());
495 if (!mSlicerManagers[index]->GetVF().IsNull())
496 selector.EnablePropagationCheckBox();
497 if (selector.exec()) {
498 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
499 reader.SetSelectedItems(selector.getSelectedItems());
500 reader.SetImage(mSlicerManagers[index]->GetImage());
501 if (selector.PropagationEnabled())
502 reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
504 std::vector<vvMesh::Pointer> contours=reader.GetOutput();
505 for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
506 i!=contours.end(); i++)
507 AddContour(index,*i,selector.PropagationEnabled());
508 QApplication::restoreOverrideCursor();
512 //------------------------------------------------------------------------------
515 //------------------------------------------------------------------------------
516 void vvMainWindow::ComputeDeformableRegistration()
518 if (mSlicerManagers.size() > 0) {
519 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
520 vvDeformationDialog dialog(index,mSlicerManagers);
522 std::string base_name=itksys::SystemTools::GetFilenameWithoutExtension(mSlicerManagers[dialog.GetInputFileIndex()]->GetFileName());
523 AddField(dialog.GetOutput(),dialog.getFieldFile(),dialog.GetInputFileIndex());
524 WarpImage(dialog.GetSelectedSlicer(),dialog.GetReferenceFrameIndex());
526 std::cout << "Error or user cancellation while computing deformation field..." << std::endl;
527 } else QMessageBox::information(this, "Need to open image","You must open an image first.");
529 //------------------------------------------------------------------------------
532 //------------------------------------------------------------------------------
533 void vvMainWindow::WarpImage()
535 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
536 if (!mSlicerManagers[index]->GetVF().IsNull()) {
538 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
539 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
541 WarpImage(mSlicerManagers[index],ref);
544 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field"));
546 //------------------------------------------------------------------------------
549 //------------------------------------------------------------------------------
550 void vvMainWindow::WarpImage(vvSlicerManager* selected_slicer,int reference_phase)
552 if (!selected_slicer->GetVF().IsNull()) {
553 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
554 QFileInfo info(selected_slicer->GetFileName().c_str());
555 vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
556 reference_phase,this);
557 if (warp.ComputeWarpedImage()) {
558 AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
559 AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
560 AddImage(warp.GetJacobianImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_jacobian.mhd");
561 QApplication::restoreOverrideCursor();
563 QApplication::restoreOverrideCursor();
564 QMessageBox::warning(this,tr("Different spacings"),tr("The vector field and image spacings must be the same in order to warp."));
567 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field."));
569 //------------------------------------------------------------------------------
572 //------------------------------------------------------------------------------
573 vvMainWindow::~vvMainWindow()
575 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
576 if (mSlicerManagers[i] != NULL)
577 delete mSlicerManagers[i];
580 //------------------------------------------------------------------------------
582 //------------------------------------------------------------------------------
583 QTabWidget * vvMainWindow::GetTab()
587 //------------------------------------------------------------------------------
590 //------------------------------------------------------------------------------
591 void vvMainWindow::MergeImages()
593 QString Extensions = EXTENSIONS;
594 Extensions += ";;All Files (*)";
595 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images"),mInputPathName,Extensions);
598 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
599 std::vector<std::string> vector;
601 unsigned int currentDim = 0;
602 std::vector<double> currentSpacing;
603 std::vector<int> currentSize;
604 std::vector<double> currentOrigin;
606 for (int i = 0; i < files.size(); i++) {
607 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
608 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
609 reader->SetFileName(files[i].toStdString().c_str());
610 reader->ReadImageInformation();
612 //NOViewWidget->hide();
613 //NEViewWidget->hide();
614 //SOViewWidget->hide();
615 //SEViewWidget->hide();
617 currentDim = reader->GetNumberOfDimensions();
619 for (unsigned int j = 0; j < currentDim; j++) {
622 currentSpacing.resize(currentDim);
623 currentSize.resize(currentDim);
624 currentOrigin.resize(currentDim);
626 currentOrigin[j] = reader->GetOrigin(j);
627 currentSpacing[j] = reader->GetSpacing(j);
628 currentSize[j] = reader->GetDimensions(j);
629 } else if (currentDim != reader->GetNumberOfDimensions()
630 || currentSpacing[j] != reader->GetSpacing(j)
631 || currentSize[j] != (int)reader->GetDimensions(j)
632 || currentOrigin[j] != reader->GetOrigin(j)) {
633 QString error = "Cannot read file (too different from others ";
634 error += files[i].toStdString().c_str();
635 QMessageBox::information(this,tr("Reading problem"),error);
641 vector.push_back(files[i].toStdString());
644 if (vector.size() > 0)
645 LoadImages(vector, vvImageReader::MERGED);
647 //------------------------------------------------------------------------------
649 //------------------------------------------------------------------------------
650 void vvMainWindow::SliceImages()
652 QString Extensions = EXTENSIONS;
653 Extensions += ";;All Files (*)";
655 QStringList files = QFileDialog::getOpenFileNames(this,tr("Slice Images"),mInputPathName,Extensions);
658 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
659 std::vector<std::string> vector;
660 for (int i = 0; i < files.size(); i++)
661 vector.push_back(files[i].toStdString());
662 LoadImages(vector, vvImageReader::SLICED);
664 //------------------------------------------------------------------------------
666 //------------------------------------------------------------------------------
667 void vvMainWindow::MergeImagesWithTime()
669 QString Extensions = EXTENSIONS;
670 Extensions += ";;All Files (*)";
671 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images With Time"),mInputPathName,Extensions);
674 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
675 std::vector<std::string> vector;
677 unsigned int currentDim = 0;
678 std::vector<double> currentSpacing;
679 std::vector<int> currentSize;
680 std::vector<double> currentOrigin;
682 for (int i = 0; i < files.size(); i++) {
683 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
684 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
686 reader->SetFileName(files[i].toStdString().c_str());
687 reader->ReadImageInformation();
689 currentDim = reader->GetNumberOfDimensions();
691 for (unsigned int j = 0; j < currentDim; j++) {
694 currentSpacing.resize(currentDim);
695 currentSize.resize(currentDim);
696 currentOrigin.resize(currentDim);
698 currentOrigin[j] = reader->GetOrigin(j);
699 currentSpacing[j] = reader->GetSpacing(j);
700 currentSize[j] = reader->GetDimensions(j);
701 } else if (currentDim != reader->GetNumberOfDimensions()
702 || currentSpacing[j] != reader->GetSpacing(j)
703 || currentSize[j] != (int)reader->GetDimensions(j)
704 || currentOrigin[j] != reader->GetOrigin(j)) {
705 QString error = "Cannot read file (too different from others ";
706 error += files[i].toStdString().c_str();
707 QMessageBox::information(this,tr("Reading problem"),error);
713 vector.push_back(files[i].toStdString());
715 QString error = "Cannot read file info for ";
716 error += files[i].toStdString().c_str();
718 error += "Maybe you're trying to open an image in an unsupported format?\n";
719 QMessageBox::information(this,tr("Reading problem"),error);
722 sort(vector.begin(),vector.end());
723 if (vector.size() > 1)
724 LoadImages(vector, vvImageReader::MERGEDWITHTIME);
726 QMessageBox::warning(this,tr("Reading problem"),"You need to select at least two images to merge images with time.\nIf you only want to open one image, please use the \"Open Image\" function.");
728 //------------------------------------------------------------------------------
731 //------------------------------------------------------------------------------
732 void vvMainWindow::OpenDicom()
734 std::vector<std::string> files;
736 std::cout << "dicomSeriesSelector " << std::endl;
737 if (dicomSeriesSelector->exec() == QDialog::Accepted) {
738 files = *(dicomSeriesSelector->GetFilenames());
739 LoadImages(files, vvImageReader::DICOM);
742 //------------------------------------------------------------------------------
744 //------------------------------------------------------------------------------
745 void vvMainWindow::OpenImages()
747 QString Extensions = EXTENSIONS;
748 Extensions += ";;All Files (*)";
750 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images"),mInputPathName,Extensions);
753 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
754 std::vector<std::string> vector;
755 for (int i = 0; i < files.size(); i++)
756 vector.push_back(files[i].toStdString());
757 LoadImages(vector, vvImageReader::IMAGE);
759 //------------------------------------------------------------------------------
760 void vvMainWindow::OpenRecentImage()
762 QAction * caller = qobject_cast<QAction*>(sender());
763 std::vector<std::string> images;
764 images.push_back(caller->text().toStdString());
765 mInputPathName = itksys::SystemTools::GetFilenamePath(images[0]).c_str();
766 LoadImages(images, vvImageReader::IMAGE);
768 //------------------------------------------------------------------------------
771 //------------------------------------------------------------------------------
772 void vvMainWindow::OpenImageWithTime()
774 QString Extensions = EXTENSIONS;
775 Extensions += ";;All Files (*)";
777 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images With Time"),mInputPathName,Extensions);
780 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
781 std::vector<std::string> vector;
782 for (int i = 0; i < files.size(); i++) {
783 vector.push_back(files[i].toStdString());
785 LoadImages(vector, vvImageReader::IMAGEWITHTIME);
787 //------------------------------------------------------------------------------
790 //------------------------------------------------------------------------------
791 void vvMainWindow::LoadImages(std::vector<std::string> files, vvImageReader::LoadedImageType filetype)
793 //Separate the way to open images and dicoms
795 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME)
796 fileSize = files.size();
800 // For SLICED, we need the number of slices (ndim and #slices)
801 std::vector<unsigned int> nSlices;
802 nSlices.resize(files.size());
803 std::fill(nSlices.begin(), nSlices.end(), 1);
804 if (filetype == vvImageReader::SLICED) {
805 for (int i = 0; i < fileSize; i++) {
806 itk::ImageIOBase::Pointer header = clitk::readImageHeader(files[i]);
807 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
810 QString error = "Cannot open file \n";
811 error += files[i].c_str();
812 QMessageBox::information(this,tr("Reading problem"),error);
815 if (header->GetNumberOfDimensions() < 3) {
817 QString error = "Dimension problem. Cannot slice \n";
818 error += files[i].c_str();
819 QMessageBox::information(this,tr("Reading problem"),error);
822 nSlices[i] = header->GetDimensions( header->GetNumberOfDimensions()-1 );
826 //Only add to the list of recently opened files when a single file is opened,
827 //to avoid polluting the list of recently opened files
828 if (files.size() == 1) {
829 QFileInfo finfo=tr(files[0].c_str());
830 AddToRecentlyOpenedImages(finfo.absoluteFilePath().toStdString());
831 updateRecentlyOpenedFilesMenu(GetRecentlyOpenedImages());
833 //init the progress events
834 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
835 vvProgressDialog progress("Opening " + files[0],fileSize>1);
836 qApp->processEvents();
838 int numberofsuccesulreads=0;
839 //open images as 1 or multiples
840 for (int i = 0; i < fileSize; i++) {
842 progress.SetText("Opening " + files[i]);
843 progress.SetProgress(i,fileSize);
844 qApp->processEvents();
846 for (unsigned int j = 0; j < nSlices[i]; j++) {
847 //read the image and put it in mSlicerManagers
848 vvSlicerManager* imageManager = new vvSlicerManager(4);
849 qApp->processEvents();
851 bool SetImageSucceed=false;
853 // Change filename if an image with the same already exist
854 int number = GetImageDuplicateFilenameNumber(files[i] + std::string("_slice"));
856 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME || filetype == vvImageReader::SLICED)
857 SetImageSucceed = imageManager->SetImage(files[i],filetype, number, j);
859 SetImageSucceed = imageManager->SetImages(files,filetype, number);
861 if (!SetImageSucceed) {
862 QApplication::restoreOverrideCursor();
863 QString error = "Cannot open file \n";
864 error += imageManager->GetLastError().c_str();
865 QMessageBox::information(this,tr("Reading problem"),error);
868 mSlicerManagers.push_back(imageManager);
870 //create an item in the tree with good settings
871 QTreeWidgetItem *item = new QTreeWidgetItem();
872 item->setData(0,Qt::UserRole,files[i].c_str());
873 QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
874 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
875 item->setData(1,Qt::UserRole,tr("image"));
876 item->setToolTip(COLUMN_IMAGE_NAME, imageManager->GetListOfAbsoluteFilePathInOneString("image").c_str());
877 qApp->processEvents();
879 //Create the buttons for reload and close
880 qApp->processEvents();
881 QTreePushButton* cButton = new QTreePushButton;
882 cButton->setItem(item);
883 cButton->setColumn(COLUMN_CLOSE_IMAGE);
884 cButton->setToolTip(tr("close image"));
885 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
886 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
887 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
889 QTreePushButton* rButton = new QTreePushButton;
890 rButton->setItem(item);
891 rButton->setColumn(COLUMN_RELOAD_IMAGE);
892 rButton->setToolTip(tr("reload image"));
893 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
894 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
895 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
897 DataTree->addTopLevelItem(item);
898 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
899 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
901 //set the id of the image
902 QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
903 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
904 mSlicerManagers.back()->SetId(id.toStdString());
906 linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
908 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
909 this,SLOT(CurrentImageChanged(std::string)));
910 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
911 this, SLOT(CurrentPickedImageChanged(std::string)));
912 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
913 this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
914 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
915 this, SLOT(VectorChanged(int,double,double,double, double)));
916 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
917 this, SLOT(OverlayChanged(int,double,double)));
918 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
919 this, SLOT(FusionChanged(int,double)));
920 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
921 this,SLOT(WindowLevelChanged()));
922 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
923 this,SLOT(UpdateSlice(int,int)));
924 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
925 this,SLOT(UpdateTSlice(int, int)));
926 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
927 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
928 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
929 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
930 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
931 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
932 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
933 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
934 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
936 numberofsuccesulreads++;
940 if (numberofsuccesulreads) {
941 NOViewWidget->show();
942 NEViewWidget->show();
943 SOViewWidget->show();
944 SEViewWidget->show();
949 // Try to guess default WindowLevel
951 mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
952 if ((range[0] == 0) && (range[1] == 1)) {
953 presetComboBox->setCurrentIndex(5);// binary
958 QApplication::restoreOverrideCursor();
960 //------------------------------------------------------------------------------
962 //------------------------------------------------------------------------------
963 void vvMainWindow::UpdateTree()
965 DataTree->resizeColumnToContents(COLUMN_TREE);
966 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
967 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
968 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
969 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
970 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
971 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
972 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
974 //------------------------------------------------------------------------------
976 //------------------------------------------------------------------------------
977 void vvMainWindow::CurrentImageChanged(std::string id)
979 if (id == mCurrentSelectedImageId) return; // Do nothing
981 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
982 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
985 DataTree->topLevelItem(i)->setSelected(0);
987 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
988 DataTree->topLevelItem(i)->child(child)->setSelected(0);
991 DataTree->topLevelItem(selected)->setSelected(1);
992 mCurrentSelectedImageId = id;
993 emit SelectedImageHasChanged(mSlicerManagers[selected]);
995 //------------------------------------------------------------------------------
997 //------------------------------------------------------------------------------
998 void vvMainWindow::CurrentPickedImageChanged(std::string id)
1000 if (id == mCurrentPickedImageId) return; // Do nothing
1002 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1003 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
1006 DataTree->topLevelItem(i)->setSelected(0);
1008 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
1009 DataTree->topLevelItem(i)->child(child)->setSelected(0);
1012 DataTree->topLevelItem(selected)->setSelected(1);
1013 mCurrentPickedImageId = id;
1014 mCurrentPickedImageIndex = selected;
1016 //------------------------------------------------------------------------------
1018 //------------------------------------------------------------------------------
1019 void vvMainWindow::ImageInfoChanged()
1021 contextActions[6]->setEnabled(1);
1022 contextActions[5]->setEnabled(1);
1023 actionSave_As->setEnabled(1);
1024 actionAdd_VF_to_current_Image->setEnabled(1);
1025 actionAdd_fusion_image->setEnabled(1);
1026 actionNorth_East_Window->setEnabled(1);
1027 actionNorth_West_Window->setEnabled(1);
1028 actionSouth_East_Window->setEnabled(1);
1029 actionSouth_West_Window->setEnabled(1);
1030 vvToolManager::GetInstance()->EnableToolsInMenu(this, true);
1031 inverseButton->setEnabled(1);
1033 goToCursorPushButton->setEnabled(1);
1035 if (DataTree->selectedItems().size()) {
1036 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1038 colorMapComboBox->setEnabled(1);
1039 for (int i = 0; i < DataTree->topLevelItem(index)->childCount(); i++) {
1040 if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
1041 DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion") {
1042 colorMapComboBox->setEnabled(0);
1047 std::vector<double> origin;
1048 std::vector<double> inputSpacing;
1049 std::vector<int> inputSize;
1050 std::vector<double> sizeMM;
1051 vtkSmartPointer<vtkMatrix4x4> transformation;
1054 QString inputSizeInBytes;
1055 QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1057 if (mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size() > 1 || playMode == 1) {
1058 playButton->setEnabled(1);
1059 frameRateLabel->setEnabled(1);
1060 frameRateSpinBox->setEnabled(1);
1062 playButton->setEnabled(0);
1063 frameRateLabel->setEnabled(0);
1064 frameRateSpinBox->setEnabled(0);
1070 vvImage::Pointer imageSelected;
1071 if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
1072 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1073 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
1074 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
1075 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
1076 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
1077 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
1078 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
1080 else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "contour") {
1081 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1084 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1087 dimension = imageSelected->GetNumberOfDimensions();
1088 origin.resize(dimension);
1089 inputSpacing.resize(dimension);
1090 inputSize.resize(dimension);
1091 sizeMM.resize(dimension);
1092 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1093 for (int i = 0; i < dimension; i++) {
1094 origin[i] = imageSelected->GetOrigin()[i];
1095 inputSpacing[i] = imageSelected->GetSpacing()[i];
1096 inputSize[i] = imageSelected->GetSize()[i];
1097 sizeMM[i] = inputSize[i]*inputSpacing[i];
1098 NPixel *= inputSize[i];
1100 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1102 QString dim = QString::number(dimension) + " (";
1103 dim += pixelType + ")";
1105 infoPanel->setFileName(image);
1106 infoPanel->setDimension(dim);
1107 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1108 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1109 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1110 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1111 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1112 transformation = imageSelected->GetTransform()->GetMatrix();
1113 infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
1115 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1116 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1117 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1118 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1120 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1121 for (int i = 0; i < 4; i++) {
1122 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1123 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1128 infoPanel->setFileName(image);
1129 infoPanel->setDimension(dim);
1130 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1131 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1132 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1133 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1134 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1136 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1137 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1138 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1139 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1141 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1142 for (int i = 0; i < 4; i++) {
1143 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1144 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1148 WindowLevelChanged();
1150 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
1151 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1152 overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
1153 mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
1154 mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
1156 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1157 overlayPanel->getVFProperty(-1,-1,-1);
1159 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
1160 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1162 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1165 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
1166 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1168 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1172 //------------------------------------------------------------------------------
1174 //------------------------------------------------------------------------------
1175 void vvMainWindow::ShowDocumentation()
1177 documentation->show();
1179 //------------------------------------------------------------------------------
1181 //------------------------------------------------------------------------------
1182 void vvMainWindow::PopupRegisterForm(bool checkCanPush)
1184 vvRegisterForm* registerForm = new vvRegisterForm(QUrl("http://www.creatis.insa-lyon.fr/~dsarrut/vvregister/write.php"), getVVSettingsPath(), getSettingsOptionFormat());
1186 registerForm->show();
1188 if(registerForm->canPush()) {
1189 registerForm->show();
1190 registerForm->acquitPushed();//too bad if there is not internet connection anymore.
1194 //------------------------------------------------------------------------------
1196 //------------------------------------------------------------------------------
1197 void vvMainWindow::ShowHelpDialog()
1199 help_dialog->show();
1201 //------------------------------------------------------------------------------
1203 //------------------------------------------------------------------------------
1204 void vvMainWindow::ChangeViewMode()
1207 if (viewMode == 1) {
1211 splitter_3->setSizes(size);
1212 OSplitter->setSizes(size);
1213 DataTree->setColumnHidden(2,1);
1214 DataTree->setColumnHidden(3,1);
1215 DataTree->setColumnHidden(4,1);
1220 splitter_3->setSizes(size);
1221 OSplitter->setSizes(size);
1222 DataTree->setColumnHidden(2,0);
1223 DataTree->setColumnHidden(3,0);
1224 DataTree->setColumnHidden(4,0);
1226 UpdateRenderWindows();
1228 ** I don't know why but for both resized QVTKWidget we also need to render
1229 ** the associated Slicer to redraw crosses.
1231 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1232 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
1233 mSlicerManagers[i]->GetSlicer(0)->Render();
1234 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
1235 mSlicerManagers[i]->GetSlicer(2)->Render();
1238 //------------------------------------------------------------------------------
1240 //------------------------------------------------------------------------------
1241 QString vvMainWindow::GetSizeInBytes(unsigned long size)
1243 QString result = "";// QString::number(size);
1244 //result += " bytes (";
1245 if (size > 1000000000) {
1247 result += QString::number(size);
1248 result += "Gb";//)";
1249 } else if (size > 1000000) {
1251 result += QString::number(size);
1252 result += "Mb";//)";
1253 } else if (size > 1000) {
1255 result += QString::number(size);
1256 result += "kb";//)";
1260 //------------------------------------------------------------------------------
1262 //------------------------------------------------------------------------------
1263 QString vvMainWindow::Get4x4MatrixDoubleAsString(vtkSmartPointer<vtkMatrix4x4> matrix)
1265 std::ostringstream strmatrix;
1267 for (unsigned int i = 0; i < 4; i++) {
1268 for (unsigned int j = 0; j < 4; j++) {
1269 strmatrix.flags(ios::showpos);
1270 strmatrix.width(10);
1271 strmatrix.precision(3);
1272 strmatrix.setf(ios::fixed,ios::floatfield);
1273 strmatrix.fill(' ');
1274 strmatrix << std::left << matrix->GetElement(i, j);
1275 //strmatrix.width(10);
1278 strmatrix << std::endl;
1280 QString result = strmatrix.str().c_str();
1283 //------------------------------------------------------------------------------
1285 //------------------------------------------------------------------------------
1286 QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble)
1289 for (unsigned int i= 0; i < vectorDouble.size(); i++) {
1292 result += QString::number(vectorDouble[i]);
1296 //------------------------------------------------------------------------------
1298 //------------------------------------------------------------------------------
1299 QString vvMainWindow::GetVectorIntAsString(std::vector<int> vectorInt)
1302 for (unsigned int i= 0; i < vectorInt.size(); i++) {
1305 result += QString::number(vectorInt[i]);
1309 //------------------------------------------------------------------------------
1311 //------------------------------------------------------------------------------
1312 int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item)
1314 QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1315 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1316 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1321 //------------------------------------------------------------------------------
1323 //------------------------------------------------------------------------------
1324 QTreeWidgetItem* vvMainWindow::GetItemFromSlicerManager(vvSlicerManager* sm)
1326 QString id = sm->GetId().c_str();
1327 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1328 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1329 return DataTree->topLevelItem(i);
1333 //------------------------------------------------------------------------------
1335 //------------------------------------------------------------------------------
1336 void vvMainWindow::DisplayChanged(QTreeWidgetItem *clickedItem, int column)
1338 if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
1341 // Get parent information (might be the same item)
1342 int slicerManagerIndex = GetSlicerIndexFromItem(clickedItem);
1343 QTreeWidgetItem* clickedParentItem = DataTree->topLevelItem(slicerManagerIndex);
1344 vvSlicer* clickedSlicer = mSlicerManagers[slicerManagerIndex]->GetSlicer(column-1);
1346 // Go over the complete item tree (only 2 levels, parents and children)
1347 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1348 // Trick to avoid redoing twice the job for a key (sr)
1349 mSlicerManagers[i]->GetSlicer(column-1)->GetRenderWindow()->GetInteractor()->SetKeySym("Crap");
1351 QTreeWidgetItem* currentParentItem = DataTree->topLevelItem(i);
1352 if(currentParentItem != clickedParentItem) {
1353 // Not the branch of the clicked item, uncheck all
1356 currentParentItem->setData(column,Qt::CheckStateRole, 0);
1357 mSlicerManagers[i]->UpdateSlicer(column-1, false);
1360 for (int iChild = 0; iChild < currentParentItem->childCount(); iChild++) {
1361 currentParentItem->child(iChild)->setData(column,Qt::CheckStateRole, 0);
1365 // Branch of the clicked one: get check status from actor visibility in slicer
1366 // and toggle the clicked one
1369 bool vis = clickedSlicer->GetActorVisibility("image", 0);
1370 bool draw = clickedSlicer->GetRenderer()->GetDraw();
1372 // Update slicer (after getting visibility)
1373 mSlicerManagers[slicerManagerIndex]->UpdateSlicer(column-1, true);
1374 mSlicerManagers[slicerManagerIndex]->UpdateInfoOnCursorPosition(column-1);
1375 DisplaySliders(slicerManagerIndex, column-1);
1376 if(clickedParentItem == clickedItem) {
1378 vis = !draw || !vis;
1380 clickedSlicer->SetActorVisibility("image", 0, vis);
1381 clickedParentItem->setData(column, Qt::CheckStateRole, vis?2:0);
1384 std::map<std::string, int> actorTypeCounts;
1385 for (int iChild = 0; iChild < clickedParentItem->childCount(); iChild++) {
1386 QTreeWidgetItem* currentChildItem = clickedParentItem->child(iChild);
1387 std::string actorType = currentChildItem->data(1,Qt::UserRole).toString().toStdString();
1388 vis = clickedSlicer->GetActorVisibility(actorType, actorTypeCounts[actorType]);
1389 if(currentChildItem == clickedItem) {
1390 // Toggle or force visibility if it was not on this branch so far
1391 vis = !draw || !vis;
1392 clickedSlicer->SetActorVisibility(actorType, actorTypeCounts[actorType], vis);
1394 currentChildItem->setData(column, Qt::CheckStateRole, vis?2:0);
1395 actorTypeCounts[actorType]++;
1400 clickedSlicer->Render();
1402 //------------------------------------------------------------------------------
1404 void vvMainWindow::InitSlicers()
1406 if (mSlicerManagers.size()) {
1407 mSlicerManagers.back()->GenerateDefaultLookupTable();
1409 mSlicerManagers.back()->SetSlicerWindow(0,NOViewWidget->GetRenderWindow());
1410 mSlicerManagers.back()->SetSlicerWindow(1,NEViewWidget->GetRenderWindow());
1411 mSlicerManagers.back()->SetSlicerWindow(2,SOViewWidget->GetRenderWindow());
1412 mSlicerManagers.back()->SetSlicerWindow(3,SEViewWidget->GetRenderWindow());
1416 //------------------------------------------------------------------------------
1417 void vvMainWindow::InitDisplay()
1419 if (mSlicerManagers.size()) {
1420 //BE CAREFUL : this is absolutely necessary to set the interactor style
1421 //in order to have the same style instanciation for all SlicerManagers in
1423 for (int j = 0; j < 4; j++) {
1424 vvInteractorStyleNavigator* style = vvInteractorStyleNavigator::New();
1425 style->SetAutoAdjustCameraClippingRange(1);
1426 bool AlreadySelected = false;
1427 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1428 mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
1430 //select the image only if previous are not selected
1431 if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1) {
1432 mSlicerManagers[i]->UpdateSlicer(j,1);
1433 AlreadySelected = true;
1434 } else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected) {
1435 if (DataTree->selectedItems().size() == 0)
1436 DataTree->topLevelItem(i)->setSelected(1);
1437 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
1438 mSlicerManagers[i]->UpdateSlicer(j,1);
1439 DisplaySliders(i,j);
1441 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,0);
1442 mSlicerManagers[i]->UpdateSlicer(j,0);
1449 //------------------------------------------------------------------------------
1451 //------------------------------------------------------------------------------
1452 void vvMainWindow::DisplaySliders(int slicer, int window)
1455 mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
1456 int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
1460 tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
1461 int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetTSlice();
1462 bool showHorizontal = false;
1463 bool showVertical = false;
1464 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1465 || (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 2
1466 && mSlicerManagers[slicer]->GetType() != vvImageReader::IMAGEWITHTIME
1467 && mSlicerManagers[slicer]->GetType() != vvImageReader::MERGEDWITHTIME))
1468 showVertical = true;
1469 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1470 || mSlicerManagers[slicer]->GetType() == vvImageReader::IMAGEWITHTIME
1471 || mSlicerManagers[slicer]->GetType() == vvImageReader::MERGEDWITHTIME)
1472 showHorizontal = true;
1475 verticalSliders[window]->show();
1477 verticalSliders[window]->hide();
1478 verticalSliders[window]->setRange(range[0],range[1]);
1479 verticalSliders[window]->setValue(position);
1482 horizontalSliders[window]->show();
1484 horizontalSliders[window]->hide();
1485 horizontalSliders[window]->setRange(tRange[0],tRange[1]);
1486 horizontalSliders[window]->setValue(tPosition);
1488 //------------------------------------------------------------------------------
1490 //------------------------------------------------------------------------------
1491 void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column)
1493 int index = GetSlicerIndexFromItem(item);
1495 if (DataTree->topLevelItem(index) != item) {
1496 QString warning = "Do you really want to close the overlay : ";
1497 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1498 QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
1500 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1501 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1502 if (msgBox.exec() == QMessageBox::AcceptRole) {
1503 std::string overlay_type=item->data(1,Qt::UserRole).toString().toStdString();
1504 int overlay_index=0;
1505 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++) {
1506 if (DataTree->topLevelItem(index)->\
1507 child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1509 if (DataTree->topLevelItem(index)->child(child) == item) break;
1511 mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
1512 mSlicerManagers[index]->SetColorMap(0);
1513 DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
1514 mSlicerManagers[index]->Render();
1516 } else if (DataTree->topLevelItemCount() <= 1) {
1517 QString warning = "Do you really want to close the image : ";
1518 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1519 warning += "\nThis is the last image, you're about to close vv !!!";
1520 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1522 msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
1523 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1524 if (msgBox.exec() == QMessageBox::AcceptRole) {
1528 QString warning = "Do you really want to close the image : ";
1529 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1530 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1532 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1533 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1534 if (msgBox.exec() == QMessageBox::AcceptRole) {
1536 // Tell tools that we close an image
1537 emit AnImageIsBeingClosed(mSlicerManagers[index]);
1539 std::vector<vvSlicerManager*>::iterator Manageriter = mSlicerManagers.begin();
1540 DataTree->takeTopLevelItem(index);
1541 for (int i = 0; i < index; i++) {
1544 linkPanel->removeImage(index);
1545 mSlicerManagers[index]->RemoveActors();
1546 delete mSlicerManagers[index];
1547 mSlicerManagers.erase(Manageriter);
1555 //------------------------------------------------------------------------------
1557 //------------------------------------------------------------------------------
1558 void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column)
1560 // int index = GetSlicerIndexFromItem(item);
1561 // QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1562 // if (item->data(1,Qt::UserRole).toString() == "vector")
1563 // mSlicerManagers[index]->ReloadVF();
1565 // mSlicerManagers[index]->Reload();
1567 // QApplication::restoreOverrideCursor();
1568 int index = GetSlicerIndexFromItem(item);
1569 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1570 QString role=item->data(1,Qt::UserRole).toString();
1571 if ( role == "vector"){
1572 mSlicerManagers[index]->ReloadVF();
1574 else if (role == "overlay"){
1575 mSlicerManagers[index]->ReloadOverlay();
1577 else if (role == "fusion"){
1578 mSlicerManagers[index]->ReloadFusion();
1581 mSlicerManagers[index]->Reload();
1583 // Update view and info
1585 mSlicerManagers[index]->Render();
1586 QApplication::restoreOverrideCursor();
1588 //------------------------------------------------------------------------------
1590 //------------------------------------------------------------------------------
1591 void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value)
1593 infoPanel->setCurrentInfo(visibility,x,y,z,X,Y,Z,value);
1595 //------------------------------------------------------------------------------
1597 //------------------------------------------------------------------------------
1598 void vvMainWindow::VectorChanged(int visibility,double x, double y, double z, double value)
1600 overlayPanel->getCurrentVectorInfo(visibility,x,y,z,value);
1602 //------------------------------------------------------------------------------
1604 //------------------------------------------------------------------------------
1605 void vvMainWindow::OverlayChanged(int visibility, double valueOver, double valueRef)
1607 overlayPanel->getCurrentOverlayInfo(visibility,valueOver, valueRef);
1609 //------------------------------------------------------------------------------
1611 //------------------------------------------------------------------------------
1612 void vvMainWindow::FusionChanged(int visibility, double value)
1614 overlayPanel->getCurrentFusionInfo(visibility,value);
1616 //------------------------------------------------------------------------------
1618 //------------------------------------------------------------------------------
1619 void vvMainWindow::WindowLevelChanged()
1622 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1623 if(index==-1) return;
1624 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1625 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1626 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1627 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1630 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay())
1631 overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor(),
1632 mSlicerManagers[index]->GetLinkOverlayWindowLevel(),
1633 mSlicerManagers[index]->GetOverlayColorWindow(),
1634 mSlicerManagers[index]->GetOverlayColorLevel());
1636 overlayPanel->getOverlayProperty(-1,0,0.,0.);
1639 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion())
1640 overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
1641 mSlicerManagers[index]->GetFusionThresholdOpacity(),
1642 mSlicerManagers[index]->GetFusionColorMap(),
1643 mSlicerManagers[index]->GetFusionWindow(),
1644 mSlicerManagers[index]->GetFusionLevel());
1646 overlayPanel->getFusionProperty(-1, -1, -1, -1, -1);
1648 //------------------------------------------------------------------------------
1650 //------------------------------------------------------------------------------
1651 void vvMainWindow::WindowLevelEdited()
1653 presetComboBox->setCurrentIndex(6);
1654 UpdateWindowLevel();
1656 //------------------------------------------------------------------------------
1658 //------------------------------------------------------------------------------
1659 void vvMainWindow::SetWindowLevel(double w, double l)
1661 windowSpinBox->setValue(w);
1662 levelSpinBox->setValue(l);
1663 presetComboBox->setCurrentIndex(6);
1664 colorMapComboBox->setCurrentIndex(0);
1665 UpdateWindowLevel();
1667 //------------------------------------------------------------------------------
1669 //------------------------------------------------------------------------------
1670 void vvMainWindow::UpdateWindowLevel()
1672 if (DataTree->selectedItems().size()) {
1673 if (presetComboBox->currentIndex() == 7) //For ventilation
1674 colorMapComboBox->setCurrentIndex(5);
1675 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1676 mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
1677 mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
1678 mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
1679 mSlicerManagers[index]->Render();
1680 WindowLevelChanged();
1683 //------------------------------------------------------------------------------
1685 //------------------------------------------------------------------------------
1686 void vvMainWindow::UpdateColorMap()
1688 if (DataTree->selectedItems().size()) {
1689 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1690 mSlicerManagers[index]->SetColorMap(colorMapComboBox->currentIndex());
1691 mSlicerManagers[index]->Render();
1694 //------------------------------------------------------------------------------
1695 void vvMainWindow::SwitchWindowLevel()
1697 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1698 int window = mSlicerManagers[index]->GetColorWindow();
1699 presetComboBox->setCurrentIndex(6);
1700 windowSpinBox->setValue(-window);
1701 UpdateWindowLevel();
1703 //------------------------------------------------------------------------------
1705 //------------------------------------------------------------------------------
1706 void vvMainWindow::ApplyWindowLevelToAllImages()
1708 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1709 if (mSlicerManagers[i] == NULL)
1711 mSlicerManagers[i]->SetColorWindow(windowSpinBox->value());
1712 mSlicerManagers[i]->SetColorLevel(levelSpinBox->value());
1713 mSlicerManagers[i]->SetPreset(6);
1714 mSlicerManagers[i]->Render();
1717 //------------------------------------------------------------------------------
1719 //------------------------------------------------------------------------------
1720 void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
1722 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1723 if (mSlicerManagers[i]->GetId() == id) {
1724 //mSlicerManagers[i]->SetTSlice(temps);
1725 mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
1726 mSlicerManagers[i]->UpdateViews(0,slicer);
1731 //------------------------------------------------------------------------------
1733 //------------------------------------------------------------------------------
1734 void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm, vvSlicer* refSlicer)
1736 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1737 if (id == mSlicerManagers[i]->GetId()) {
1738 mSlicerManagers[i]->UpdateLinkedNavigation(refSlicer);
1742 //------------------------------------------------------------------------------
1744 //------------------------------------------------------------------------------
1745 void vvMainWindow::ShowContextMenu(QPoint point)
1747 if (!DataTree->selectedItems().size()) {
1748 contextActions[1]->setEnabled(0);
1749 contextActions[2]->setEnabled(0);
1750 contextActions[3]->setEnabled(0);
1751 contextActions[4]->setEnabled(0);
1752 contextActions[5]->setEnabled(0);
1753 contextActions[6]->setEnabled(0);
1755 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1756 contextActions[1]->setEnabled(1);
1757 contextActions[2]->setEnabled(
1758 DataTree->itemWidget(DataTree->selectedItems()[0],
1759 COLUMN_RELOAD_IMAGE)->isEnabled());
1760 contextActions[3]->setEnabled(1);
1761 contextActions[5]->setEnabled(1);
1762 contextActions[6]->setEnabled(1);
1764 if (mSlicerManagers[index]->GetDimension() < 3)
1765 contextActions[4]->setEnabled(0);
1767 contextActions[4]->setEnabled(1);
1769 contextMenu.exec(QCursor::pos());
1771 //------------------------------------------------------------------------------
1773 //------------------------------------------------------------------------------
1774 void vvMainWindow::CloseImage()
1776 CloseImage(DataTree->selectedItems()[0],0);
1778 //------------------------------------------------------------------------------
1780 //------------------------------------------------------------------------------
1781 void vvMainWindow::ReloadImage()
1783 ReloadImage(DataTree->selectedItems()[0],0);
1785 //------------------------------------------------------------------------------
1787 //------------------------------------------------------------------------------
1788 void vvMainWindow::SelectOverlayImage()
1790 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1792 //check if one overlay image is added
1793 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1794 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay") {
1795 QString error = "Cannot add more than one compared image\n";
1796 error += "Please remove first ";
1797 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1798 QMessageBox::information(this,tr("Problem adding compared image !"),error);
1802 QString Extensions = EXTENSIONS;
1803 Extensions += ";;All Files (*)";
1804 QString file = QFileDialog::getOpenFileName(this,tr("Load Overlay image"),mInputPathName,Extensions);
1805 if (!file.isEmpty())
1806 AddOverlayImage(index,file);
1808 //------------------------------------------------------------------------------
1810 //------------------------------------------------------------------------------
1811 void vvMainWindow::AddOverlayImage(int index, QString file)
1814 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1815 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1816 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1817 reader->SetFileName(file.toStdString().c_str());
1818 reader->ReadImageInformation();
1819 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1820 int dimension = reader->GetNumberOfDimensions();
1821 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1822 vvProgressDialog progress("Opening " + file.toStdString());
1823 qApp->processEvents();
1825 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1826 if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component)) {
1827 //create an item in the tree with good settings
1828 QTreeWidgetItem *item = new QTreeWidgetItem();
1829 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1830 item->setData(1,Qt::UserRole,tr("overlay"));
1831 QFileInfo fileinfo(file); //Do not show the path
1832 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
1833 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("overlay").c_str());
1834 qApp->processEvents();
1836 for (int j = 1; j <= 4; j++) {
1837 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1840 //Create the buttons for reload and close
1841 qApp->processEvents();
1842 QTreePushButton* cButton = new QTreePushButton;
1843 cButton->setItem(item);
1844 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1845 cButton->setToolTip(tr("close image"));
1846 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1847 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1848 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1850 QTreePushButton* rButton = new QTreePushButton;
1851 rButton->setItem(item);
1852 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1853 rButton->setToolTip(tr("reload image"));
1854 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1855 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1856 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1858 DataTree->topLevelItem(index)->setExpanded(1);
1859 DataTree->topLevelItem(index)->addChild(item);
1860 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1861 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1863 //set the id of the image
1864 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1865 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1867 qApp->processEvents();
1869 QApplication::restoreOverrideCursor();
1871 QApplication::restoreOverrideCursor();
1872 QString error = "Cannot import the new image.\n";
1873 error += mSlicerManagers[index]->GetLastError().c_str();
1874 QMessageBox::information(this,tr("Problem reading image !"),error);
1876 WindowLevelChanged();
1878 //------------------------------------------------------------------------------
1881 //------------------------------------------------------------------------------
1882 void vvMainWindow::AddROI(int index, QString file)
1885 // Get slice manager
1889 vvImageReader * mReader = new vvImageReader;
1890 mReader->SetInputFilename(filename.toStdString());
1891 mReader->Update(IMAGE);
1892 if (mReader->GetLastError().size() != 0) {
1893 std::cerr << "Error while reading " << filename.toStdString() << std::endl;
1894 QString error = "Cannot open file \n";
1895 error += mReader->GetLastError().c_str();
1896 QMessageBox::information(this,tr("Reading problem"),error);
1900 vvImage::Pointer roi = mReader->GetOutput();
1902 // Create roi in new tool
1903 vvToolStructureSetManager::AddImage(mCurrentSlicerManager, roi);
1906 //------------------------------------------------------------------------------
1908 //------------------------------------------------------------------------------
1909 void vvMainWindow::SelectFusionImage()
1911 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1913 //check if one fusion image is added
1914 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1915 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") {
1916 QString error = "Cannot add more than one fusion image\n";
1917 error += "Please remove first ";
1918 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1919 QMessageBox::information(this,tr("Problem adding fusion image !"),error);
1923 QString Extensions = EXTENSIONS;
1924 Extensions += ";;All Files (*)";
1925 QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
1926 if (!file.isEmpty())
1927 AddFusionImage(index,file);
1929 //------------------------------------------------------------------------------
1931 //------------------------------------------------------------------------------
1932 void vvMainWindow::ResetTransformationToIdentity()
1934 std::string actorType = DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString().toStdString();
1935 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1936 mSlicerManagers[index]->ResetTransformationToIdentity(actorType);
1939 //------------------------------------------------------------------------------
1941 //------------------------------------------------------------------------------
1942 void vvMainWindow::AddFusionImage(int index, QString file)
1944 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1945 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1946 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1947 reader->SetFileName(file.toStdString().c_str());
1948 reader->ReadImageInformation();
1949 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1951 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1952 vvProgressDialog progress("Opening fusion");
1953 qApp->processEvents();
1955 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1956 if (mSlicerManagers[index]->SetFusion(file.toStdString(),
1957 reader->GetNumberOfDimensions(), component)) {
1958 //create an item in the tree with good settings
1959 QTreeWidgetItem *item = new QTreeWidgetItem();
1960 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1961 item->setData(1,Qt::UserRole,tr("fusion"));
1962 QFileInfo fileinfo(filename.c_str()); //Do not show the path
1963 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
1964 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusion").c_str());
1965 qApp->processEvents();
1967 for (int j = 1; j <= 4; j++) {
1968 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1971 //Create the buttons for reload and close
1972 qApp->processEvents();
1973 QTreePushButton* cButton = new QTreePushButton;
1974 cButton->setItem(item);
1975 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1976 cButton->setToolTip(tr("close image"));
1977 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1978 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1979 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1981 QTreePushButton* rButton = new QTreePushButton;
1982 rButton->setItem(item);
1983 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1984 rButton->setToolTip(tr("reload image"));
1985 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1986 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1987 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1989 DataTree->topLevelItem(index)->setExpanded(1);
1990 DataTree->topLevelItem(index)->addChild(item);
1991 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1992 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1994 //set the id of the image
1995 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1996 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1998 qApp->processEvents();
2000 QApplication::restoreOverrideCursor();
2002 QApplication::restoreOverrideCursor();
2003 QString error = "Cannot import the new image.\n";
2004 error += mSlicerManagers[index]->GetLastError().c_str();
2005 QMessageBox::information(this,tr("Problem reading image !"),error);
2008 QString error = "Cannot import the new image.\n";
2009 QMessageBox::information(this,tr("Problem reading image !"),error);
2012 //------------------------------------------------------------------------------
2015 //------------------------------------------------------------------------------
2016 void vvMainWindow::OpenField()
2018 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2019 //check if a vector field has already been added
2020 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
2021 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector") {
2022 QString error = "Cannot add more than one vector field\n";
2023 error += "Please remove first ";
2024 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
2025 QMessageBox::information(this,tr("Problem adding vector field!"),error);
2029 QString Extensions = "Images ( *.mhd)";
2030 Extensions += ";;Images ( *.mha)";
2031 Extensions += ";;Images ( *.vf)";
2032 QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
2033 if (!file.isEmpty())
2034 AddField(file,index);
2036 //------------------------------------------------------------------------------
2039 //------------------------------------------------------------------------------
2040 void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
2042 //create an item in the tree with good settings
2043 QTreeWidgetItem *item = new QTreeWidgetItem();
2044 item->setData(0,Qt::UserRole,filename.toStdString().c_str());
2045 item->setData(1,Qt::UserRole,tr("vector"));
2046 QFileInfo fileinfo(filename); //Do not show the path
2047 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
2048 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("vector").c_str());
2049 qApp->processEvents();
2051 for (int j = 1; j <= 4; j++) {
2052 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2055 //Create the buttons for reload and close
2056 qApp->processEvents();
2057 QTreePushButton* cButton = new QTreePushButton;
2058 cButton->setItem(item);
2059 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2060 cButton->setToolTip(tr("close vector field"));
2061 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2062 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2063 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2065 QTreePushButton* rButton = new QTreePushButton;
2066 rButton->setItem(item);
2067 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2068 rButton->setToolTip(tr("reload vector field"));
2069 rButton->setEnabled(from_disk);
2070 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2071 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2072 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2074 DataTree->topLevelItem(index)->setExpanded(1);
2075 DataTree->topLevelItem(index)->addChild(item);
2076 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2077 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2079 //set the id of the image
2080 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2081 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2083 qApp->processEvents();
2085 QApplication::restoreOverrideCursor();
2087 //------------------------------------------------------------------------------
2090 //------------------------------------------------------------------------------
2091 void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
2093 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2094 vvSlicerManager* imageManager = mSlicerManagers[index];
2095 if (imageManager->SetVF(vf,file.toStdString())) {
2096 AddFieldEntry(file,index,false);
2098 QString error = "Cannot import the vector field for this image.\n";
2099 error += imageManager->GetLastError().c_str();
2100 QMessageBox::information(this,tr("Problem reading VF !"),error);
2102 QApplication::restoreOverrideCursor();
2104 //------------------------------------------------------------------------------
2107 //------------------------------------------------------------------------------
2108 void vvMainWindow::AddField(QString file,int index)
2110 if (QFile::exists(file)) {
2111 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2113 //init the progress events
2114 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2115 vvProgressDialog progress("Opening " + file.toStdString());
2116 qApp->processEvents();
2118 //read the vector and put it in the current mSlicerManager
2119 vvSlicerManager* imageManager = mSlicerManagers[index];
2120 qApp->processEvents();
2122 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2123 if (imageManager->SetVF(file.toStdString())) {
2124 imageManager->Render();
2125 AddFieldEntry(file,index,true);
2127 QApplication::restoreOverrideCursor();
2128 QString error = "Cannot import the vector field for this image.\n";
2129 error += imageManager->GetLastError().c_str();
2130 QMessageBox::information(this,tr("Problem reading VF !"),error);
2133 QMessageBox::information(this,tr("Problem reading VF !"),"File doesn't exist!");
2136 //------------------------------------------------------------------------------
2139 //------------------------------------------------------------------------------
2140 void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width, double r, double g, double b)
2142 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2143 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
2144 for (int i = 0; i < 4; i++) {
2145 mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
2146 mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
2147 mSlicerManagers[index]->GetSlicer(i)->SetVFWidth(width);
2148 mSlicerManagers[index]->GetSlicer(i)->SetVFColor(r,g,b);
2150 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
2152 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(0);
2156 //------------------------------------------------------------------------------
2159 //------------------------------------------------------------------------------
2160 void vvMainWindow::SetOverlayProperty(int color, int linked, double window, double level)
2162 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2163 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
2164 mSlicerManagers[index]->SetOverlayColor(color);
2165 mSlicerManagers[index]->SetColorMap(0);
2166 mSlicerManagers[index]->SetLinkOverlayWindowLevel(linked);
2167 mSlicerManagers[index]->SetOverlayColorWindow(window);
2168 mSlicerManagers[index]->SetOverlayColorLevel(level);
2169 mSlicerManagers[index]->Render();
2172 //------------------------------------------------------------------------------
2174 //------------------------------------------------------------------------------
2175 void vvMainWindow::SetFusionProperty(int opacity, int thresOpacity, int colormap,double window, double level)
2177 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2178 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
2179 mSlicerManagers[index]->SetFusionColorMap(colormap);
2180 mSlicerManagers[index]->SetFusionOpacity(opacity);
2181 mSlicerManagers[index]->SetFusionThresholdOpacity(thresOpacity);
2182 mSlicerManagers[index]->SetFusionWindow(window);
2183 mSlicerManagers[index]->SetFusionLevel(level);
2184 mSlicerManagers[index]->SetColorMap(0);
2185 mSlicerManagers[index]->Render();
2188 //------------------------------------------------------------------------------
2190 //------------------------------------------------------------------------------
2191 void vvMainWindow::SaveAs()
2193 if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
2194 QMessageBox::warning(this,tr("Unsupported type"),tr("Sorry, saving a vector field is unsupported for the moment"));
2198 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2199 int dimension = mSlicerManagers[index]->GetDimension();
2200 QStringList OutputListeFormat;
2201 OutputListeFormat.clear();
2202 if (dimension == 1) {
2203 OutputListeFormat.push_back(".mhd");
2204 OutputListeFormat.push_back(".mha");
2206 if (dimension == 2) {
2207 OutputListeFormat.push_back(".bmp");
2208 OutputListeFormat.push_back(".png");
2209 OutputListeFormat.push_back(".jpeg");
2210 OutputListeFormat.push_back(".tif");
2211 OutputListeFormat.push_back(".mhd");
2212 OutputListeFormat.push_back(".mha");
2213 OutputListeFormat.push_back(".hdr");
2214 OutputListeFormat.push_back(".vox");
2215 } else if (dimension == 3) {
2216 OutputListeFormat.push_back(".mhd");
2217 OutputListeFormat.push_back(".mha");
2218 OutputListeFormat.push_back(".hdr");
2219 OutputListeFormat.push_back(".vox");
2220 } else if (dimension == 4) {
2221 OutputListeFormat.push_back(".mhd");
2222 OutputListeFormat.push_back(".mha");
2224 QString Extensions = "AllFiles(*.*)";
2225 for (int i = 0; i < OutputListeFormat.count(); i++) {
2226 Extensions += ";;Images ( *";
2227 Extensions += OutputListeFormat[i];
2230 QString fileName = QFileDialog::getSaveFileName(this,
2232 mSlicerManagers[index]->GetFileName().c_str(),
2234 if (!fileName.isEmpty()) {
2235 std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
2236 if (OutputListeFormat.contains(
2237 fileformat.c_str())) {
2238 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2239 std::string action = "Saving";
2240 vvProgressDialog progress("Saving "+fileName.toStdString());
2241 qApp->processEvents();
2242 vvImageWriter::Pointer writer = vvImageWriter::New();
2243 writer->SetOutputFileName(fileName.toStdString());
2244 writer->SetInput(mSlicerManagers[index]->GetImage());
2246 QApplication::restoreOverrideCursor();
2247 if (writer->GetLastError().size()) {
2248 QString error = "Saving did not succeed\n";
2249 error += writer->GetLastError().c_str();
2250 QMessageBox::information(this,tr("Saving Problem"),error);
2254 QString error = fileformat.c_str();
2255 if (error.isEmpty())
2256 error += "no file format specified !";
2258 error += " format unknown !!!\n";
2259 QMessageBox::information(this,tr("Saving Problem"),error);
2264 //------------------------------------------------------------------------------
2267 //------------------------------------------------------------------------------
2268 void vvMainWindow::AddLink(QString image1,QString image2)
2270 unsigned int sm1 = 0;
2271 unsigned int sm2 = 0;
2273 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2274 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2275 mSlicerManagers[i]->AddLink(image2.toStdString());
2278 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2279 mSlicerManagers[i]->AddLink(image1.toStdString());
2284 if (linkPanel->isLinkAll()) {
2285 emit UpdateLinkedNavigation(mSlicerManagers[sm1]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2286 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2288 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[sm1], mSlicerManagers[sm1]->GetSlicer(0));
2292 //------------------------------------------------------------------------------
2295 //------------------------------------------------------------------------------
2296 void vvMainWindow::RemoveLink(QString image1,QString image2)
2298 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2299 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2300 mSlicerManagers[i]->RemoveLink(image2.toStdString());
2302 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2303 mSlicerManagers[i]->RemoveLink(image1.toStdString());
2307 //------------------------------------------------------------------------------
2309 //------------------------------------------------------------------------------
2310 void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset)
2313 while(sm != mSlicerManagers[index])
2315 index = (index+offset) % mSlicerManagers.size();
2317 QTreeWidgetItem* item = GetItemFromSlicerManager(mSlicerManagers[index]);
2318 item->setData(slicer+1,Qt::CheckStateRole,2); //change checkbox
2319 CurrentImageChanged(mSlicerManagers[index]->GetId()); //select new image
2320 DisplayChanged(item,slicer+1);
2322 //------------------------------------------------------------------------------
2324 void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
2326 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2327 if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
2328 for (int j = 0; j < 4; j++) {
2329 mSlicerManagers[i]->SetTSliceInSlicer(value,j);
2330 //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
2331 //UpdateTSlice(j,value);
2333 mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
2338 //------------------------------------------------------------------------------
2341 //------------------------------------------------------------------------------
2342 void vvMainWindow::NOHorizontalSliderMoved()
2344 // if (mCurrentTime == NOHorizontalSlider->value()) return;
2345 HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
2346 // mCurrentTime = NOHorizontalSlider->value();
2348 //------------------------------------------------------------------------------
2351 //------------------------------------------------------------------------------
2352 void vvMainWindow::NEHorizontalSliderMoved()
2354 // if (mCurrentTime == NEHorizontalSlider->value()) return;
2355 HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
2356 // mCurrentTime = NEHorizontalSlider->value();
2358 //------------------------------------------------------------------------------
2361 //------------------------------------------------------------------------------
2362 void vvMainWindow::SOHorizontalSliderMoved()
2364 // if (mCurrentTime == SOHorizontalSlider->value()) return;
2365 HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
2366 // mCurrentTime = SOHorizontalSlider->value();
2368 //------------------------------------------------------------------------------
2371 //------------------------------------------------------------------------------
2372 void vvMainWindow::SEHorizontalSliderMoved()
2374 // if (mCurrentTime == SEHorizontalSlider->value()) return;
2375 HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
2376 // mCurrentTime = SEHorizontalSlider->value();
2378 //------------------------------------------------------------------------------
2380 //------------------------------------------------------------------------------
2381 void vvMainWindow::NOVerticalSliderChanged()
2383 static int value=-1;
2384 if (value == NOVerticalSlider->value()) return;
2385 else value = NOVerticalSlider->value();
2386 // int value = NOVerticalSlider->value();
2387 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2388 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2389 if (mSlicerManagers[i]->GetSlicer(0)->GetSlice() != value) {
2390 mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
2391 mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
2393 // If nor Update/Render -> slider not work
2394 // only render = ok navigation, but for contour Update needed but slower ?
2396 mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
2397 //mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2403 //------------------------------------------------------------------------------
2406 //------------------------------------------------------------------------------
2407 void vvMainWindow::NEVerticalSliderChanged()
2409 static int value=-1;
2410 if (value == NEVerticalSlider->value()) return;
2411 else value = NEVerticalSlider->value();
2412 // int value = NEVerticalSlider->value();
2413 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2414 if (DataTree->topLevelItem(i)->data(COLUMN_UR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2415 if (mSlicerManagers[i]->GetSlicer(1)->GetSlice() != value) {
2416 mSlicerManagers[i]->GetSlicer(1)->SetSlice(value);
2417 mSlicerManagers[i]->VerticalSliderHasChanged(1, value);
2418 mSlicerManagers[i]->UpdateSlice(1);
2419 //mSlicerManagers[i]->GetSlicer(1)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2425 //------------------------------------------------------------------------------
2428 //------------------------------------------------------------------------------
2429 void vvMainWindow::SOVerticalSliderChanged()
2431 static int value=-1;
2432 if (value == SOVerticalSlider->value()) return;
2433 else value = SOVerticalSlider->value();
2434 //int value = SOVerticalSlider->value();
2435 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2436 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2437 if (mSlicerManagers[i]->GetSlicer(2)->GetSlice() != value) {
2438 mSlicerManagers[i]->GetSlicer(2)->SetSlice(value);
2439 mSlicerManagers[i]->VerticalSliderHasChanged(2, value);
2440 mSlicerManagers[i]->UpdateSlice(2);
2441 //mSlicerManagers[i]->GetSlicer(2)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2443 // else { DD("avoid SOVerticalSlider slicer update"); }
2448 //------------------------------------------------------------------------------
2451 //------------------------------------------------------------------------------
2452 void vvMainWindow::SEVerticalSliderChanged()
2454 static int value=-1;
2455 if (value == SEVerticalSlider->value()) return;
2456 else value = SEVerticalSlider->value();
2457 // int value = SEVerticalSlider->value();
2458 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2459 if (DataTree->topLevelItem(i)->data(COLUMN_DR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2460 if (mSlicerManagers[i]->GetSlicer(3)->GetSlice() != value) {
2461 mSlicerManagers[i]->GetSlicer(3)->SetSlice(value);
2462 mSlicerManagers[i]->VerticalSliderHasChanged(3, value);
2463 mSlicerManagers[i]->UpdateSlice(3);
2464 //mSlicerManagers[i]->GetSlicer(3)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2470 //------------------------------------------------------------------------------
2473 //------------------------------------------------------------------------------
2474 void vvMainWindow::UpdateSlice(int slicer, int slice)
2476 // DD("vvMainWindow::UpdateSlice");
2480 // if (slice != NOVerticalSlider->value())
2481 NOVerticalSlider->setValue(slice);
2484 NEVerticalSlider->setValue(slice);
2487 SOVerticalSlider->setValue(slice);
2490 SEVerticalSlider->setValue(slice);
2494 // DD("vvMainWindow:UpdateSlice END");
2496 //------------------------------------------------------------------------------
2499 //------------------------------------------------------------------------------
2500 void vvMainWindow::UpdateTSlice(int slicer, int slice)
2504 NOHorizontalSlider->setValue(slice);
2507 NEHorizontalSlider->setValue(slice);
2510 SOHorizontalSlider->setValue(slice);
2513 SEHorizontalSlider->setValue(slice);
2517 //------------------------------------------------------------------------------
2520 //------------------------------------------------------------------------------
2521 void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax)
2523 int position = int((min+max)/2);
2525 NOVerticalSlider->setValue(position);
2526 NOVerticalSlider->setRange(min,max);
2527 NOHorizontalSlider->setRange(tmin,tmax);
2528 } else if (slicer == 1) {
2529 NEVerticalSlider->setValue(position);
2530 NEVerticalSlider->setRange(min,max);
2531 NEHorizontalSlider->setRange(tmin,tmax);
2532 } else if (slicer == 2) {
2533 SOVerticalSlider->setValue(position);
2534 SOVerticalSlider->setRange(min,max);
2535 SOHorizontalSlider->setRange(tmin,tmax);
2536 } else if (slicer == 3) {
2537 SEVerticalSlider->setValue(position);
2538 SEVerticalSlider->setRange(min,max);
2539 SEHorizontalSlider->setRange(tmin,tmax);
2542 //------------------------------------------------------------------------------
2545 //------------------------------------------------------------------------------
2546 void vvMainWindow::SaveNOScreenshot()
2548 SaveScreenshot(NOViewWidget);
2550 //------------------------------------------------------------------------------
2553 //------------------------------------------------------------------------------
2554 void vvMainWindow::SaveNEScreenshot()
2556 SaveScreenshot(NEViewWidget);
2558 //------------------------------------------------------------------------------
2561 //------------------------------------------------------------------------------
2562 void vvMainWindow::SaveSOScreenshot()
2564 SaveScreenshot(SOViewWidget);
2566 //------------------------------------------------------------------------------
2569 //------------------------------------------------------------------------------
2570 void vvMainWindow::SaveSEScreenshot()
2572 SaveScreenshot(SEViewWidget);
2574 //------------------------------------------------------------------------------
2577 //------------------------------------------------------------------------------
2578 void vvMainWindow::SaveScreenshotAllSlices()
2580 QVTKWidget *widget = NOViewWidget;
2582 int index = 0;// GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2583 vvSlicerManager * SM = mSlicerManagers[index];
2584 vvImage * image = SM->GetImage();
2585 vvSlicer * slicer = SM->GetSlicer(0);
2586 int orientation = slicer->GetOrientation();
2587 int nbSlices = image->GetSize()[orientation];
2588 vtkSmartPointer<vtkRenderWindow> renderWindow = widget->GetRenderWindow();
2590 // Select filename base
2591 QString filename = QFileDialog::getSaveFileName(this,
2592 tr("Save As (filename will be completed by slice number)"),
2593 itksys::SystemTools::GetFilenamePath(mSlicerManagers[index]->GetFileName()).c_str(),
2594 "Images( *.png);;Images( *.jpg)");
2597 for(uint i=0; i<nbSlices; i++) {
2599 slicer->SetSlice(i); // -> change the slice of the current slicer
2600 SM->UpdateSlice(0); // --> this one emit UpdateSlice
2601 QCoreApplication::flush(); // -> needed to force display of contours
2604 vtkSmartPointer<vtkWindowToImageFilter> windowToImageFilter = vtkSmartPointer<vtkWindowToImageFilter>::New();
2605 windowToImageFilter->SetInput(renderWindow);
2606 windowToImageFilter->SetMagnification(1);
2607 windowToImageFilter->SetInputBufferTypeToRGBA(); //also record the alpha (transparency) channel
2608 windowToImageFilter->Update();
2610 vtkSmartPointer<vtkPNGWriter> writer = vtkSmartPointer<vtkPNGWriter>::New();
2611 std::string fn = itksys::SystemTools::GetFilenameWithoutLastExtension(filename.toStdString());
2612 std::string num = clitk::toString(i);
2613 if (i<10) num = "0"+num;
2614 if (i<100) num = "0"+num;
2615 if (i<1000) num = "0"+num;
2617 fn = itksys::SystemTools::GetFilenamePath(filename.toStdString()) + "/"+ fn
2618 + "_" + num + itksys::SystemTools::GetFilenameLastExtension(filename.toStdString());
2619 writer->SetFileName(fn.c_str());
2620 writer->SetInput(windowToImageFilter->GetOutput());
2624 //------------------------------------------------------------------------------
2627 //------------------------------------------------------------------------------
2628 void vvMainWindow::SaveScreenshot(QVTKWidget *widget)
2630 QString Extensions = "Images( *.png);;";
2631 Extensions += "Images( *.jpg);;";
2632 Extensions += "Images( *.bmp);;";
2633 Extensions += "Images( *.tif);;";
2634 Extensions += "Images( *.ppm)";
2635 #ifdef VTK_USE_FFMPEG_ENCODER
2636 Extensions += "Images( *.avi)";
2638 #ifdef VTK_USE_MPEG2_ENCODER
2639 Extensions += "Images( *.mpg)";
2642 int smIndex=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2643 QString fileName = QFileDialog::getSaveFileName(this,
2645 itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(),
2648 if (!fileName.isEmpty()) {
2649 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2650 w2i->SetInput(widget->GetRenderWindow());
2652 vtkImageData *image = w2i->GetOutput();
2654 const char *ext = fileName.toStdString().c_str() + strlen(fileName.toStdString().c_str()) - 4;
2655 if (!strcmp(ext, ".bmp")) {
2656 vtkBMPWriter *bmp = vtkBMPWriter::New();
2657 bmp->SetInput(image);
2658 bmp->SetFileName(fileName.toStdString().c_str());
2661 } else if (!strcmp(ext, ".tif")) {
2662 vtkTIFFWriter *tif = vtkTIFFWriter::New();
2663 tif->SetInput(image);
2664 tif->SetFileName(fileName.toStdString().c_str());
2667 } else if (!strcmp(ext, ".ppm")) {
2668 vtkPNMWriter *pnm = vtkPNMWriter::New();
2669 pnm->SetInput(image);
2670 pnm->SetFileName(fileName.toStdString().c_str());
2673 } else if (!strcmp(ext, ".png")) {
2674 vtkPNGWriter *png = vtkPNGWriter::New();
2675 png->SetInput(image);
2676 png->SetFileName(fileName.toStdString().c_str());
2679 } else if (!strcmp(ext, ".jpg")) {
2680 vtkJPEGWriter *jpg = vtkJPEGWriter::New();
2681 jpg->SetInput(image);
2682 jpg->SetFileName(fileName.toStdString().c_str());
2685 #ifdef VTK_USE_FFMPEG_ENCODER
2686 } else if (!strcmp(ext, ".avi")) {
2687 vtkFFMPEGWriter *mpg = vtkFFMPEGWriter::New();
2688 mpg->SetInput(image);
2689 mpg->SetFileName(fileName.toStdString().c_str());
2694 vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
2695 int nSlice = vvImg->GetVTKImages().size();
2696 for(int i=0; i<nSlice; i++) {
2697 mSlicerManagers[smIndex]->SetNextTSlice(0);
2698 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2699 w2i->SetInput(widget->GetRenderWindow());
2701 mpg->SetInput(w2i->GetOutput());
2707 #ifdef VTK_USE_MPEG2_ENCODER
2708 } else if (!strcmp(ext, ".mpg")) {
2709 vtkMPEG2Writer *mpg = vtkMPEG2Writer::New();
2710 mpg->SetInput(image);
2711 mpg->SetFileName(fileName.toStdString().c_str());
2714 vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
2715 int nSlice = vvImg->GetVTKImages().size();
2716 for(int i=0; i<nSlice; i++) {
2717 mSlicerManagers[smIndex]->SetNextTSlice(0);
2718 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2719 w2i->SetInput(widget->GetRenderWindow());
2721 mpg->SetInput(w2i->GetOutput());
2728 QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
2732 //------------------------------------------------------------------------------
2735 //------------------------------------------------------------------------------
2736 void vvMainWindow::GoToCursor()
2738 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2739 for (int column = 1; column < 5; column++) {
2740 if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1) {
2741 double* cursorPos = mSlicerManagers[index]->GetSlicer(column-1)->GetCursorPosition();
2742 mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
2743 cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
2744 mSlicerManagers[index]->UpdateViews(1,column-1);
2745 mSlicerManagers[index]->UpdateLinked(column-1);
2750 //------------------------------------------------------------------------------
2752 //------------------------------------------------------------------------------
2753 void vvMainWindow::PlayPause()
2757 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_play.png")));
2761 int image_number=DataTree->topLevelItemCount();
2763 for (int i=0; i<image_number; i++)
2764 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1) {
2770 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
2771 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2775 //------------------------------------------------------------------------------
2777 //------------------------------------------------------------------------------
2778 void vvMainWindow::PlayNext()
2780 if (playMode && !this->isHidden()) {
2781 int image_number=DataTree->topLevelItemCount();
2782 ///Only play one slicer per SM, and only if the SM is being displayed
2783 for (int i=0; i<image_number; i++)
2784 for (int j=0; j<4; j++)
2785 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1 &&
2786 DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
2787 mSlicerManagers[i]->SetNextTSlice(j);
2790 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2793 //------------------------------------------------------------------------------
2795 void vvMainWindow::ShowLastImage()
2797 if (mSlicerManagers.size() > 1) {
2798 QTreeWidgetItem * item=DataTree->topLevelItem(DataTree->topLevelItemCount()-1);
2799 CurrentImageChanged(mSlicerManagers.back()->GetId()); //select new image
2800 item->setData(1,Qt::CheckStateRole,2); //show the new image in the first panel
2801 DisplayChanged(item,1);
2805 //------------------------------------------------------------------------------
2806 void vvMainWindow::UpdateRenderWindows()
2808 if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
2809 if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
2810 if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
2811 if (SEViewWidget->GetRenderWindow()) SEViewWidget->GetRenderWindow()->Render();
2813 //------------------------------------------------------------------------------
2815 //------------------------------------------------------------------------------
2816 void vvMainWindow::SegmentationOnCurrentImage()
2818 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2820 vvSegmentationDialog segmentation;
2821 segmentation.SetImage(mSlicerManagers[index]->GetSlicer(0)->GetImage());
2822 segmentation.exec();
2824 //------------------------------------------------------------------------------
2826 void vvMainWindow::SurfaceViewerLaunch()
2828 vvSurfaceViewerDialog surfaceViewer;
2829 surfaceViewer.exec();
2831 //------------------------------------------------------------------------------
2834 //------------------------------------------------------------------------------
2835 int vvMainWindow::GetImageDuplicateFilenameNumber(std::string filename)
2838 for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
2839 vvSlicerManager * v = mSlicerManagers[l];
2840 if (v->GetBaseFileName() ==
2841 vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
2842 number = std::max(number, v->GetBaseFileNameNumber()+1);
2847 //------------------------------------------------------------------------------
2850 //------------------------------------------------------------------------------
2851 vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
2853 // Change filename if another image exist with the same name
2854 int number = GetImageDuplicateFilenameNumber(filename);
2856 // Create new SliceManager
2857 vvSlicerManager* slicer_manager = new vvSlicerManager(4);
2858 slicer_manager->SetImage(image);//, IMAGE, number);
2859 // filename = filename+"_"+clitk::toString(number);
2860 slicer_manager->SetFilename(filename, number);
2861 mSlicerManagers.push_back(slicer_manager);
2863 //create an item in the tree with good settings
2864 QTreeWidgetItem *item = new QTreeWidgetItem();
2865 item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
2866 item->setData(1,Qt::UserRole,tr("image"));
2867 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,slicer_manager->GetFileName().c_str());//filename.c_str());
2868 qApp->processEvents();
2870 for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1);
2872 //Create the buttons for reload and close
2873 qApp->processEvents();
2874 QTreePushButton* cButton = new QTreePushButton;
2875 cButton->setItem(item);
2876 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2877 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2878 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2879 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2881 QTreePushButton* rButton = new QTreePushButton;
2882 rButton->setItem(item);
2883 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2884 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2885 rButton->setEnabled(0);
2886 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2887 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2889 DataTree->addTopLevelItem(item);
2890 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2891 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2893 //set the id of the image
2894 QString id = slicer_manager->GetFileName().c_str() + QString::number(mSlicerManagers.size()-1);
2895 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2896 mSlicerManagers.back()->SetId(id.toStdString());
2898 linkPanel->addImage(slicer_manager->GetFileName().c_str()// filename
2899 , id.toStdString());
2901 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
2902 this, SLOT(CurrentImageChanged(std::string)));
2903 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
2904 this, SLOT(CurrentPickedImageChanged(std::string)));
2905 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
2906 this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
2907 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
2908 this, SLOT(VectorChanged(int,double,double,double, double)));
2909 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
2910 this, SLOT(OverlayChanged(int,double,double)));
2911 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
2912 this, SLOT(FusionChanged(int,double)));
2913 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
2914 this,SLOT(WindowLevelChanged()));
2915 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
2916 this,SLOT(UpdateSlice(int,int)));
2917 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
2918 this,SLOT(UpdateTSlice(int, int)));
2919 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
2920 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
2921 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
2922 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
2923 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
2924 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
2925 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
2926 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
2927 connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
2929 qApp->processEvents();
2933 qApp->processEvents();
2937 return slicer_manager;
2939 //------------------------------------------------------------------------------
2942 //------------------------------------------------------------------------------
2943 void vvMainWindow::UpdateCurrentSlicer()
2946 if (DataTree->selectedItems().size() > 0) {
2947 index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2949 mSlicerManagerCurrentIndex = index;
2951 //------------------------------------------------------------------------------