1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ======================================================================-====*/
20 #include <QMessageBox>
21 #include <QInputDialog>
23 #include "QTreePushButton.h"
26 #include "vvMainWindow.h"
27 #include "vvHelpDialog.h"
28 #include "vvDocumentation.h"
29 #include "vvProgressDialog.h"
30 #include "vvQDicomSeriesSelector.h"
31 #include "vvSlicerManager.h"
32 #include "clitkImageCommon.h"
34 #include "vvInteractorStyleNavigator.h"
35 #include "vvImageWriter.h"
36 #include "vvSegmentationDialog.h"
37 #include "vvSurfaceViewerDialog.h"
38 #include "vvDeformationDialog.h"
39 #include "vvImageWarp.h"
41 #include "vvMaximumIntensityProjection.h"
42 #include "vvMidPosition.h"
44 #include "vvStructSelector.h"
45 #include "vvMeshReader.h"
46 #include "vvConstants.h"
48 #ifdef CLITK_VV_USE_BDCM
49 #include <bdcmDicomFilesSelectorDialog.h>
54 #include "itkImageFileReader.h"
55 #include "itkByteSwapper.h"
56 #include "itkCommand.h"
57 #include "itkNumericSeriesFileNames.h"
60 #include "vtkImageData.h"
61 #include "vtkImageActor.h"
62 #include "vtkCornerAnnotation.h"
63 #include "vtkRenderWindow.h"
64 #include "vtkRenderWindowInteractor.h"
65 #include "vtkRenderer.h"
66 #include "vtkRendererCollection.h"
67 #include "vtkWindowToImageFilter.h"
68 #include "vtkBMPWriter.h"
69 #include "vtkTIFFWriter.h"
70 #include "vtkPNMWriter.h"
71 #include "vtkPNGWriter.h"
72 #include "vtkJPEGWriter.h"
78 #define COLUMN_UL_VIEW 1
79 #define COLUMN_UR_VIEW 2
80 #define COLUMN_DL_VIEW 3
81 #define COLUMN_DR_VIEW 4
82 #define COLUMN_CLOSE_IMAGE 5
83 #define COLUMN_RELOAD_IMAGE 6
84 #define COLUMN_IMAGE_NAME 7
86 #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.hdr *.vox *.his *.xdr)"
89 0,Qt::UserRole full filename
90 1,Qt::CheckStateRole checkbutton UL View
91 1,Qt::UserRole overlay, fusion or vector
92 2,Qt::CheckStateRole checkbutton UR View
93 3,Qt::CheckStateRole checkbutton DL View
94 4,Qt::CheckStateRole checkbutton DR View
96 5,Qt::UserRole mSlicerManager id*/
98 //------------------------------------------------------------------------------
99 vvMainWindow::vvMainWindow():vvMainWindowBase()
101 setupUi(this); // this sets up the GUI
104 mMenuTools = menuTools;
105 mContextMenu = &contextMenu;
106 mMenuExperimentalTools = menuExperimental;
110 //Init the contextMenu
111 this->setContextMenuPolicy(Qt::CustomContextMenu);
112 contextActions.resize(0);
113 QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
114 tr("O&pen new Image"));
115 actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
116 connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
117 contextActions.push_back(actionOpen_new_image);
118 contextMenu.addSeparator();
120 QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
121 tr("Close Current Image"));
122 connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
123 contextActions.push_back(actionClose_Image);
125 QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
126 tr("Reload Current Image"));
127 connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
128 contextActions.push_back(actionReload_image);
130 QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
131 tr("Save Current Image"));
132 connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
133 contextActions.push_back(actionSave_image);
135 contextMenu.addSeparator();
137 // QAction* actionCrop_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/crop.png")),
138 // tr("Crop Current Image"));
139 // connect(actionCrop_image,SIGNAL(triggered()),this,SLOT(CropImage()));
140 // contextActions.push_back(actionCrop_image);
142 QAction* actionSplit_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/cut.png")),
143 tr("Split Current Image"));
144 connect(actionSplit_image,SIGNAL(triggered()),this,SLOT(SplitImage()));
145 contextActions.push_back(actionSplit_image);
147 contextMenu.addSeparator();
149 contextMenu.addAction(actionAdd_VF_to_current_Image);
150 contextActions.push_back(actionAdd_VF_to_current_Image);
152 QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
153 tr("Add overlay image to current image"));
154 contextMenu.addAction(actionAdd_Overlay_to_current_Image);
155 contextActions.push_back(actionAdd_Overlay_to_current_Image);
157 connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
159 contextMenu.addAction(actionAdd_fusion_image);
160 connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
161 contextActions.push_back(actionAdd_fusion_image);
165 QMenu * m = new QMenu(menubar);
167 // m->setObjectName(QString::fromUtf8("TOTOTO"));
168 contextMenu.addMenu(m);
169 QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
171 QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
175 connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
179 mSlicerManagers.resize(0);
189 header.append("Name");
191 DataTree->setHeaderLabels(header);
192 DataTree->resizeColumnToContents(COLUMN_TREE);
193 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
194 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
195 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
196 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
197 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
198 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
199 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
202 documentation = new vvDocumentation();
203 help_dialog = new vvHelpDialog();
204 dicomSeriesSelector = new vvDicomSeriesSelector();
206 inverseButton->setEnabled(0);
207 actionAdd_Overlay_to_current_Image->setEnabled(0);
208 actionSave_As->setEnabled(0);
209 actionAdd_VF_to_current_Image->setEnabled(0);
210 actionAdd_fusion_image->setEnabled(0);
213 verticalSliders.push_back(NOVerticalSlider);
214 verticalSliders.push_back(NEVerticalSlider);
215 verticalSliders.push_back(SOVerticalSlider);
216 verticalSliders.push_back(SEVerticalSlider);
218 for (int i =0; i < 4; i++)
219 verticalSliders[i]->hide();
221 horizontalSliders.push_back(NOHorizontalSlider);
222 horizontalSliders.push_back(NEHorizontalSlider);
223 horizontalSliders.push_back(SOHorizontalSlider);
224 horizontalSliders.push_back(SEHorizontalSlider);
226 for (int i =0; i < 4; i++)
227 horizontalSliders[i]->hide();
230 connect(NOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOVerticalSliderChanged()));
231 connect(NEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEVerticalSliderChanged()));
232 connect(SOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOVerticalSliderChanged()));
233 connect(SEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEVerticalSliderChanged()));
235 connect(NOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOHorizontalSliderMoved()));
236 connect(NEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEHorizontalSliderMoved()));
237 connect(SOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOHorizontalSliderMoved()));
238 connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved()));
241 connect(actionMaximum_Intensity_Projection,SIGNAL(triggered()),this,SLOT(ComputeMIP()));
242 connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition()));
243 connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration()));
244 connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
245 connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
246 connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
247 connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
248 connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
249 connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
250 connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
251 connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
252 connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
253 connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
254 connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
255 connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
256 connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
258 ///////////////////////////////////////////////
259 connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
260 connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
261 ///////////////////////////////////////////////
263 actionNorth_East_Window->setEnabled(0);
264 actionNorth_West_Window->setEnabled(0);
265 actionSouth_East_Window->setEnabled(0);
266 actionSouth_West_Window->setEnabled(0);
268 connect(actionNorth_East_Window,SIGNAL(triggered()),this,SLOT(SaveNEScreenshot()));
269 connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
270 connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
271 connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
273 connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
274 connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
275 SLOT(DisplayChanged(QTreeWidgetItem*, int)));
277 connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
278 connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
279 connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
280 connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
281 connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
282 connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
285 connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
287 connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
288 connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
289 connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int)),this,SLOT(SetVFProperty(int,int,int,int)));
290 connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int)),this,SLOT(SetOverlayProperty(int)));
291 connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,double,double)),
292 this,SLOT(SetFusionProperty(int,int,double,double)));
293 connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
297 playButton->setEnabled(0);
298 frameRateLabel->setEnabled(0);
299 frameRateSpinBox->setEnabled(0);
300 connect(playButton, SIGNAL(clicked()),this,SLOT(PlayPause()));
301 connect(frameRateSpinBox, SIGNAL(valueChanged(int)),this,SLOT(ChangeFrameRate(int)));
303 goToCursorPushButton->setEnabled(0);
304 connect(goToCursorPushButton, SIGNAL(clicked()),this,SLOT(GoToCursor()));
306 NOViewWidget->hide();
307 NEViewWidget->hide();
308 SOViewWidget->hide();
309 SEViewWidget->hide();
311 //Recently opened files
312 std::list<std::string> recent_files = GetRecentlyOpenedImages();
313 if ( !recent_files.empty() ) {
314 QMenu * rmenu = new QMenu("Recently opened files...");
315 rmenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
316 menuFile->insertMenu(actionOpen_Image_With_Time,rmenu);
317 for (std::list<std::string>::iterator i = recent_files.begin(); i!=recent_files.end(); i++) {
318 QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")),
320 rmenu->addAction(current);
321 connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage()));
325 // Adding all new tools (insertion in the menu)
326 vvToolManager::GetInstance()->InsertToolsInMenu(this);
328 if (!CLITK_EXPERIMENTAL)
329 menuExperimental->menuAction()->setVisible(false);
331 //------------------------------------------------------------------------------
334 //------------------------------------------------------------------------------
335 void vvMainWindow::ComputeMIP()
337 vvMaximumIntensityProjection mip;
338 vvSlicerManager* selected_slicer = mSlicerManagers[GetSlicerIndexFromItem(DataTree->selectedItems()[0])];
339 QFileInfo info(selected_slicer->GetFileName().c_str());
340 mip.Compute(selected_slicer);
342 AddImage(mip.GetOutput(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_mip.mhd");
344 //------------------------------------------------------------------------------
347 //------------------------------------------------------------------------------
348 void vvMainWindow::ComputeMidPosition()
351 int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
352 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
353 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
356 midp.slicer_manager = mSlicerManagers[index];
357 midp.reference_image_index = ref;
358 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
361 QMessageBox::warning(this, "Error computing midposition image",midp.error_message.c_str());
363 QFileInfo info(midp.slicer_manager->GetFileName().c_str());
364 AddImage(midp.output,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_midposition.mhd");
366 QApplication::restoreOverrideCursor();
369 //------------------------------------------------------------------------------
372 //------------------------------------------------------------------------------
373 void vvMainWindow::AddContour(int image_index, vvMesh::Pointer contour, bool propagation)
375 QTreeWidgetItem *item = new QTreeWidgetItem();
376 item->setData(0,Qt::UserRole,"filename.vtk");
377 item->setData(1,Qt::UserRole,tr("contour"));
379 brush.setColor(QColor(contour->r*255,contour->g*255,contour->b*255));
380 brush.setStyle(Qt::SolidPattern);
381 item->setData(COLUMN_IMAGE_NAME,Qt::BackgroundRole,brush);
382 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
384 for (int j = 1; j <= 4; j++)
385 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(image_index)->data(j,Qt::CheckStateRole));
387 QTreePushButton* cButton = new QTreePushButton;
388 cButton->setItem(item);
389 cButton->setColumn(COLUMN_CLOSE_IMAGE);
390 cButton->setToolTip(tr("close image"));
391 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
392 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
393 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
395 QTreePushButton* rButton = new QTreePushButton;
396 rButton->setItem(item);
397 rButton->setColumn(COLUMN_RELOAD_IMAGE);
398 rButton->setToolTip(tr("reload image"));
399 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
400 rButton->setEnabled(false);
402 //connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
403 //this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
405 DataTree->topLevelItem(image_index)->setExpanded(1);
406 DataTree->topLevelItem(image_index)->addChild(item);
407 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
408 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
409 QString id = DataTree->topLevelItem(image_index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
410 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
413 mSlicerManagers[image_index]->AddContour(contour,propagation);
414 mSlicerManagers[image_index]->Render();
416 //------------------------------------------------------------------------------
419 //------------------------------------------------------------------------------
420 void vvMainWindow::OpenVTKContour()
422 if (mSlicerManagers.size() > 0) {
423 QString Extensions = "Images ( *.vtk *.obj)";
424 Extensions += ";;All Files (*)";
425 QString file = QFileDialog::getOpenFileName(this,tr("Open vtkPolyData"),mInputPathName,Extensions);
428 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
429 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
431 reader.SetImage(mSlicerManagers[index]->GetImage());
432 reader.SetModeToVTK();
433 reader.SetFilename(file.toStdString());
435 AddContour(index,reader.GetOutput()[0],false);
436 QApplication::restoreOverrideCursor();
439 //------------------------------------------------------------------------------
442 //------------------------------------------------------------------------------
443 void vvMainWindow::OpenDCStructContour()
445 if (mSlicerManagers.size() > 0) {
446 QString Extensions = "Dicom Files ( *.dcm; RS*)";
447 Extensions += ";;All Files (*)";
448 QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
451 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
453 reader.SetFilename(file.toStdString());
454 vvStructSelector selector;
455 selector.SetStructures(reader.GetROINames());
456 if (!mSlicerManagers[index]->GetVF().IsNull())
457 selector.EnablePropagationCheckBox();
458 if (selector.exec()) {
459 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
460 reader.SetSelectedItems(selector.getSelectedItems());
461 reader.SetImage(mSlicerManagers[index]->GetImage());
462 if (selector.PropagationEnabled())
463 reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
465 std::vector<vvMesh::Pointer> contours=reader.GetOutput();
466 for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
467 i!=contours.end(); i++)
468 AddContour(index,*i,selector.PropagationEnabled());
469 QApplication::restoreOverrideCursor();
473 //------------------------------------------------------------------------------
476 //------------------------------------------------------------------------------
477 void vvMainWindow::ComputeDeformableRegistration()
479 if (mSlicerManagers.size() > 0) {
480 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
481 vvDeformationDialog dialog(index,mSlicerManagers);
483 std::string base_name=itksys::SystemTools::GetFilenameWithoutExtension(mSlicerManagers[dialog.GetInputFileIndex()]->GetFileName());
484 AddField(dialog.GetOutput(),dialog.getFieldFile(),dialog.GetInputFileIndex());
485 WarpImage(dialog.GetSelectedSlicer(),dialog.GetReferenceFrameIndex());
487 std::cout << "Error or user cancellation while computing deformation field..." << std::endl;
488 } else QMessageBox::information(this, "Need to open image","You must open an image first.");
490 //------------------------------------------------------------------------------
493 //------------------------------------------------------------------------------
494 void vvMainWindow::WarpImage()
496 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
497 if (!mSlicerManagers[index]->GetVF().IsNull()) {
499 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
500 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
502 WarpImage(mSlicerManagers[index],ref);
505 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field"));
507 //------------------------------------------------------------------------------
510 //------------------------------------------------------------------------------
511 void vvMainWindow::WarpImage(vvSlicerManager* selected_slicer,int reference_phase)
513 if (!selected_slicer->GetVF().IsNull()) {
514 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
515 QFileInfo info(selected_slicer->GetFileName().c_str());
516 vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
517 reference_phase,this);
518 if (warp.ComputeWarpedImage()) {
519 AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
520 AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
521 AddImage(warp.GetJacobianImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_jacobian.mhd");
522 QApplication::restoreOverrideCursor();
524 QApplication::restoreOverrideCursor();
525 QMessageBox::warning(this,tr("Different spacings"),tr("The vector field and image spacings must be the same in order to warp."));
528 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field."));
530 //------------------------------------------------------------------------------
533 //------------------------------------------------------------------------------
534 vvMainWindow::~vvMainWindow()
536 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
537 if (mSlicerManagers[i] != NULL)
538 delete mSlicerManagers[i];
541 //------------------------------------------------------------------------------
543 //------------------------------------------------------------------------------
544 QTabWidget * vvMainWindow::GetTab()
548 //------------------------------------------------------------------------------
551 //------------------------------------------------------------------------------
552 void vvMainWindow::MergeImages()
554 QString Extensions = EXTENSIONS;
555 Extensions += ";;All Files (*)";
556 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images"),mInputPathName,Extensions);
559 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
560 std::vector<std::string> vector;
562 unsigned int currentDim = 0;
563 std::vector<double> currentSpacing;
564 std::vector<int> currentSize;
565 std::vector<double> currentOrigin;
567 for (int i = 0; i < files.size(); i++) {
568 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
569 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
570 reader->SetFileName(files[i].toStdString().c_str());
571 reader->ReadImageInformation();
573 //NOViewWidget->hide();
574 //NEViewWidget->hide();
575 //SOViewWidget->hide();
576 //SEViewWidget->hide();
578 currentDim = reader->GetNumberOfDimensions();
580 for (unsigned int j = 0; j < currentDim; j++) {
583 currentSpacing.resize(currentDim);
584 currentSize.resize(currentDim);
585 currentOrigin.resize(currentDim);
587 currentOrigin[j] = reader->GetOrigin(j);
588 currentSpacing[j] = reader->GetSpacing(j);
589 currentSize[j] = reader->GetDimensions(j);
590 } else if (currentDim != reader->GetNumberOfDimensions()
591 || currentSpacing[j] != reader->GetSpacing(j)
592 || currentSize[j] != (int)reader->GetDimensions(j)
593 || currentOrigin[j] != reader->GetOrigin(j)) {
594 QString error = "Cannot read file (too different from others ";
595 error += files[i].toStdString().c_str();
596 QMessageBox::information(this,tr("Reading problem"),error);
602 vector.push_back(files[i].toStdString());
605 if (vector.size() > 0)
606 LoadImages(vector, MERGED);
608 //------------------------------------------------------------------------------
611 //------------------------------------------------------------------------------
612 void vvMainWindow::MergeImagesWithTime()
614 QString Extensions = EXTENSIONS;
615 Extensions += ";;All Files (*)";
616 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images With Time"),mInputPathName,Extensions);
619 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
620 std::vector<std::string> vector;
622 unsigned int currentDim = 0;
623 std::vector<double> currentSpacing;
624 std::vector<int> currentSize;
625 std::vector<double> currentOrigin;
627 for (int i = 0; i < files.size(); i++) {
628 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
629 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
631 reader->SetFileName(files[i].toStdString().c_str());
632 reader->ReadImageInformation();
634 currentDim = reader->GetNumberOfDimensions();
636 for (unsigned int j = 0; j < currentDim; j++) {
639 currentSpacing.resize(currentDim);
640 currentSize.resize(currentDim);
641 currentOrigin.resize(currentDim);
643 currentOrigin[j] = reader->GetOrigin(j);
644 currentSpacing[j] = reader->GetSpacing(j);
645 currentSize[j] = reader->GetDimensions(j);
646 } else if (currentDim != reader->GetNumberOfDimensions()
647 || currentSpacing[j] != reader->GetSpacing(j)
648 || currentSize[j] != (int)reader->GetDimensions(j)
649 || currentOrigin[j] != reader->GetOrigin(j)) {
650 QString error = "Cannot read file (too different from others ";
651 error += files[i].toStdString().c_str();
652 QMessageBox::information(this,tr("Reading problem"),error);
658 vector.push_back(files[i].toStdString());
660 QString error = "Cannot read file info for ";
661 error += files[i].toStdString().c_str();
663 error += "Maybe you're trying to open an image in an unsupported format?\n";
664 QMessageBox::information(this,tr("Reading problem"),error);
667 sort(vector.begin(),vector.end());
668 if (vector.size() > 1)
669 LoadImages(vector, MERGEDWITHTIME);
671 QMessageBox::warning(this,tr("Reading problem"),"You need to select at least two images to merge images with time.\nIf you only want to open one image, please use the \"Open Image\" function.");
673 //------------------------------------------------------------------------------
676 //------------------------------------------------------------------------------
677 void vvMainWindow::OpenDicom()
679 std::vector<std::string> files;
681 #ifdef CLITK_VV_USE_BDCM
682 bool r = bdcm::OpenDicomFilesSelectorDialog(files,
683 "DicomFilesSelectorDialog test",
687 std::cout << "$$$$ main : user clicked 'OK' $$$$"<<std::endl;
688 std::cout << "$$$$ selected files : "<<std::endl;
689 std::vector<std::string>::iterator i;
690 for (i=files.begin(); i!=files.end(); ++i) {
691 std::cout << *i << std::endl;
693 std::cout << "$$$$ "<<std::endl;
695 LoadImages(files,DICOM);
697 std::cout << "$$$$ main : user clicked 'CANCEL' $$$$"<<std::endl;
700 std::cout << "dicomSeriesSelector " << std::endl;
701 if (dicomSeriesSelector->exec() == QDialog::Accepted) {
702 files = *(dicomSeriesSelector->GetFilenames());
703 LoadImages(files,DICOM);
708 //------------------------------------------------------------------------------
710 //------------------------------------------------------------------------------
711 void vvMainWindow::OpenImages()
713 QString Extensions = EXTENSIONS;
714 Extensions += ";;All Files (*)";
716 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images"),mInputPathName,Extensions);
719 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
720 std::vector<std::string> vector;
721 for (int i = 0; i < files.size(); i++)
722 vector.push_back(files[i].toStdString());
723 LoadImages(vector, IMAGE);
725 //------------------------------------------------------------------------------
726 void vvMainWindow::OpenRecentImage()
728 QAction * caller = qobject_cast<QAction*>(sender());
729 std::vector<std::string> images;
730 images.push_back(caller->text().toStdString());
731 mInputPathName = itksys::SystemTools::GetFilenamePath(images[0]).c_str();
732 LoadImages(images,IMAGE);
734 //------------------------------------------------------------------------------
737 //------------------------------------------------------------------------------
738 void vvMainWindow::OpenImageWithTime()
740 QString Extensions = EXTENSIONS;
741 Extensions += ";;All Files (*)";
743 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images With Time"),mInputPathName,Extensions);
746 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
747 std::vector<std::string> vector;
748 for (int i = 0; i < files.size(); i++) {
749 vector.push_back(files[i].toStdString());
751 LoadImages(vector, IMAGEWITHTIME);
753 //------------------------------------------------------------------------------
756 //------------------------------------------------------------------------------
757 void vvMainWindow::LoadImages(std::vector<std::string> files, LoadedImageType filetype)
759 //Separate the way to open images and dicoms
761 if (filetype == IMAGE || filetype == IMAGEWITHTIME)
762 fileSize = files.size();
766 //Only add to the list of recently opened files when a single file is opened,
767 //to avoid polluting the list of recently opened files
768 if (files.size() == 1) {
769 QFileInfo finfo=tr(files[0].c_str());
770 AddToRecentlyOpenedImages(finfo.absoluteFilePath().toStdString());
772 //init the progress events
773 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
774 vvProgressDialog progress("Opening " + files[0],fileSize>1);
775 qApp->processEvents();
777 int numberofsuccesulreads=0;
778 //open images as 1 or multiples
779 for (int i = 0; i < fileSize; i++) {
781 progress.Update("Opening " + files[i]);
782 progress.SetProgress(i,fileSize);
783 qApp->processEvents();
785 //read the image and put it in mSlicerManagers
786 vvSlicerManager* imageManager = new vvSlicerManager(4);
787 qApp->processEvents();
789 bool SetImageSucceed=false;
791 // Change filename if an image with the same already exist
794 for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
795 vvSlicerManager * v = mSlicerManagers[l];
796 // DD(v->GetBaseFileName());
797 // DD(v->GetFileName());
798 if (v->GetBaseFileName() ==
799 vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(files[i]))) {
800 number = std::max(number, v->GetBaseFileNameNumber()+1);
805 if (filetype == IMAGE || filetype == IMAGEWITHTIME)
806 SetImageSucceed = imageManager->SetImage(files[i],filetype, number);
808 SetImageSucceed = imageManager->SetImages(files,filetype, number);
810 if (SetImageSucceed == false) {
811 QApplication::restoreOverrideCursor();
812 QString error = "Cannot open file \n";
813 error += imageManager->GetLastError().c_str();
814 QMessageBox::information(this,tr("Reading problem"),error);
817 mSlicerManagers.push_back(imageManager);
819 //create an item in the tree with good settings
820 QTreeWidgetItem *item = new QTreeWidgetItem();
821 item->setData(0,Qt::UserRole,files[i].c_str());
822 QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
823 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
824 qApp->processEvents();
826 //Create the buttons for reload and close
827 qApp->processEvents();
828 QTreePushButton* cButton = new QTreePushButton;
829 cButton->setItem(item);
830 cButton->setColumn(COLUMN_CLOSE_IMAGE);
831 cButton->setToolTip(tr("close image"));
832 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
833 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
834 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
836 QTreePushButton* rButton = new QTreePushButton;
837 rButton->setItem(item);
838 rButton->setColumn(COLUMN_RELOAD_IMAGE);
839 rButton->setToolTip(tr("reload image"));
840 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
841 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
842 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
844 DataTree->addTopLevelItem(item);
845 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
846 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
848 //set the id of the image
849 QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
850 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
851 mSlicerManagers.back()->SetId(id.toStdString());
853 linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
855 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
856 this,SLOT(CurrentImageChanged(std::string)));
857 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
858 this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
859 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
860 this, SLOT(VectorChanged(int,double,double,double, double)));
861 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
862 this, SLOT(OverlayChanged(int,double,double)));
863 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
864 this, SLOT(FusionChanged(int,double)));
865 connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
866 this,SLOT(WindowsChanged(int, int, int)));
867 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
868 this,SLOT(WindowLevelChanged(double, double, int, int)));
869 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
870 this,SLOT(UpdateSlice(int,int)));
871 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
872 this,SLOT(UpdateTSlice(int, int)));
873 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
874 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
875 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
876 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
877 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
878 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
879 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
881 numberofsuccesulreads++;
884 if (numberofsuccesulreads) {
885 NOViewWidget->show();
886 NEViewWidget->show();
887 SOViewWidget->show();
888 SEViewWidget->show();
893 QApplication::restoreOverrideCursor();
895 // Try to guess default WindowLevel
897 mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
900 if ((range[0] == 0) && (range[1] == 1)) {
901 presetComboBox->setCurrentIndex(5);// binary
906 //------------------------------------------------------------------------------
908 //------------------------------------------------------------------------------
909 void vvMainWindow::UpdateTree()
911 DataTree->resizeColumnToContents(COLUMN_TREE);
912 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
913 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
914 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
915 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
916 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
917 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
918 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
920 //------------------------------------------------------------------------------
922 //------------------------------------------------------------------------------
923 void vvMainWindow::CurrentImageChanged(std::string id)
925 // DD("CurrentImageChanged");
927 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
928 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
931 DataTree->topLevelItem(i)->setSelected(0);
933 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
934 DataTree->topLevelItem(i)->child(child)->setSelected(0);
937 DataTree->topLevelItem(selected)->setSelected(1);
938 // DD(mSlicerManagers[selected]->GetFileName());
939 emit SelectedImageHasChanged(mSlicerManagers[selected]);
941 //------------------------------------------------------------------------------
943 //------------------------------------------------------------------------------
944 void vvMainWindow::ImageInfoChanged()
946 contextActions[7]->setEnabled(1);
947 contextActions[6]->setEnabled(1);
948 actionSave_As->setEnabled(1);
949 actionAdd_VF_to_current_Image->setEnabled(1);
950 actionAdd_fusion_image->setEnabled(1);
951 actionNorth_East_Window->setEnabled(1);
952 actionNorth_West_Window->setEnabled(1);
953 actionSouth_East_Window->setEnabled(1);
954 actionSouth_West_Window->setEnabled(1);
955 inverseButton->setEnabled(1);
957 goToCursorPushButton->setEnabled(1);
959 if (DataTree->selectedItems().size()) {
960 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
962 colorMapComboBox->setEnabled(1);
963 for (int i = 0; i < DataTree->topLevelItem(index)->childCount(); i++) {
964 if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
965 DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion") {
966 colorMapComboBox->setEnabled(0);
971 std::vector<double> origin;
972 std::vector<double> inputSpacing;
973 std::vector<int> inputSize;
974 std::vector<double> sizeMM;
977 QString inputSizeInBytes;
978 QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
980 if (mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size() > 1 || playMode == 1) {
981 playButton->setEnabled(1);
982 frameRateLabel->setEnabled(1);
983 frameRateSpinBox->setEnabled(1);
985 playButton->setEnabled(0);
986 frameRateLabel->setEnabled(0);
987 frameRateSpinBox->setEnabled(0);
993 if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
994 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
995 dimension = imageSelected->GetNumberOfDimensions();
996 origin.resize(dimension);
997 inputSpacing.resize(dimension);
998 inputSize.resize(dimension);
999 sizeMM.resize(dimension);
1000 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
1001 for (int i = 0; i < dimension; i++) {
1002 origin[i] = imageSelected->GetOrigin()[i];
1003 inputSpacing[i] = imageSelected->GetSpacing()[i];
1004 inputSize[i] = imageSelected->GetSize()[i];
1005 sizeMM[i] = inputSize[i]*inputSpacing[i];
1006 NPixel *= inputSize[i];
1008 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1009 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
1010 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
1011 dimension = imageSelected->GetNumberOfDimensions();
1012 origin.resize(dimension);
1013 inputSpacing.resize(dimension);
1014 inputSize.resize(dimension);
1015 sizeMM.resize(dimension);
1016 pixelType = mSlicerManagers[index]->GetVF()->GetScalarTypeAsString().c_str();
1017 for (int i = 0; i < dimension; i++) {
1018 origin[i] = imageSelected->GetOrigin()[i];
1019 inputSpacing[i] = imageSelected->GetSpacing()[i];
1020 inputSize[i] = imageSelected->GetSize()[i];
1021 sizeMM[i] = inputSize[i]*inputSpacing[i];
1022 NPixel *= inputSize[i];
1024 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1025 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
1026 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
1027 dimension = imageSelected->GetNumberOfDimensions();
1028 origin.resize(dimension);
1029 inputSpacing.resize(dimension);
1030 inputSize.resize(dimension);
1031 sizeMM.resize(dimension);
1032 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
1033 for (int i = 0; i < dimension; i++) {
1034 origin[i] = imageSelected->GetOrigin()[i];
1035 inputSpacing[i] = imageSelected->GetSpacing()[i];
1036 inputSize[i] = imageSelected->GetSize()[i];
1037 sizeMM[i] = inputSize[i]*inputSpacing[i];
1038 NPixel *= inputSize[i];
1040 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1041 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
1042 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
1043 dimension = imageSelected->GetNumberOfDimensions();
1044 origin.resize(dimension);
1045 inputSpacing.resize(dimension);
1046 inputSize.resize(dimension);
1047 sizeMM.resize(dimension);
1048 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
1049 for (int i = 0; i < dimension; i++) {
1050 origin[i] = imageSelected->GetOrigin()[i];
1051 inputSpacing[i] = imageSelected->GetSpacing()[i];
1052 inputSize[i] = imageSelected->GetSize()[i];
1053 sizeMM[i] = inputSize[i]*inputSpacing[i];
1054 NPixel *= inputSize[i];
1056 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1059 QString dim = QString::number(dimension) + " (";
1060 dim += pixelType + ")";
1062 infoPanel->setFileName(image);
1063 infoPanel->setDimension(dim);
1064 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1065 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1066 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1067 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1068 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1070 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1071 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1072 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1073 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1075 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1076 for (int i = 0; i < 4; i++) {
1077 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1078 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1082 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1083 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1084 // DD(mSlicerManagers[index]->GetColorMap());
1085 // DD(mSlicerManagers[index]->GetPreset());
1086 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1087 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1089 infoPanel->setFileName(image);
1090 infoPanel->setDimension(dim);
1091 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1092 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1093 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1094 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1095 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1097 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1098 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1099 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1100 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1102 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1103 for (int i = 0; i < 4; i++) {
1104 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1105 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1109 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1110 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1111 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1112 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1114 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
1115 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1116 overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
1117 mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
1118 mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
1120 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1121 overlayPanel->getVFProperty(-1,-1,-1);
1123 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
1124 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1125 overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor());
1127 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1128 overlayPanel->getOverlayProperty(-1);
1130 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
1131 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1132 overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
1133 mSlicerManagers[index]->GetFusionColorMap(),
1134 mSlicerManagers[index]->GetFusionWindow(),
1135 mSlicerManagers[index]->GetFusionLevel());
1137 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1138 overlayPanel->getFusionProperty(-1, -1,-1,-1);
1142 //------------------------------------------------------------------------------
1144 //------------------------------------------------------------------------------
1145 void vvMainWindow::ShowDocumentation()
1147 documentation->show();
1149 //------------------------------------------------------------------------------
1150 void vvMainWindow::ShowHelpDialog()
1152 help_dialog->show();
1154 //------------------------------------------------------------------------------
1156 //------------------------------------------------------------------------------
1157 void vvMainWindow::ChangeViewMode()
1159 QListIterator<int> it0(splitter_3->sizes());
1160 QListIterator<int> it1(splitter_3->sizes());
1163 while (it0.hasNext()) {
1166 while (it1.hasNext()) {
1171 if (viewMode == 1) {
1173 size0.push_back(max0);
1175 size1.push_back(max1);
1177 splitter_3->setSizes(size0);
1178 OSplitter->setSizes(size1);
1179 DataTree->setColumnHidden(2,1);
1180 DataTree->setColumnHidden(3,1);
1181 DataTree->setColumnHidden(4,1);
1184 size0.push_back(int(max0/2));
1185 size0.push_back(int(max0/2));
1186 size1.push_back(int(max1/2));
1187 size1.push_back(int(max1/2));
1188 splitter_3->setSizes(size0);
1189 OSplitter->setSizes(size1);
1190 DataTree->setColumnHidden(2,0);
1191 DataTree->setColumnHidden(3,0);
1192 DataTree->setColumnHidden(4,0);
1195 //------------------------------------------------------------------------------
1197 //------------------------------------------------------------------------------
1198 QString vvMainWindow::GetSizeInBytes(unsigned long size)
1200 QString result = "";// QString::number(size);
1201 //result += " bytes (";
1202 if (size > 1000000000) {
1204 result += QString::number(size);
1205 result += "Gb";//)";
1206 } else if (size > 1000000) {
1208 result += QString::number(size);
1209 result += "Mb";//)";
1210 } else if (size > 1000) {
1212 result += QString::number(size);
1213 result += "kb";//)";
1217 //------------------------------------------------------------------------------
1219 //------------------------------------------------------------------------------
1220 QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble)
1223 for (unsigned int i= 0; i < vectorDouble.size(); i++) {
1226 result += QString::number(vectorDouble[i]);
1230 //------------------------------------------------------------------------------
1232 //------------------------------------------------------------------------------
1233 QString vvMainWindow::GetVectorIntAsString(std::vector<int> vectorInt)
1236 for (unsigned int i= 0; i < vectorInt.size(); i++) {
1239 result += QString::number(vectorInt[i]);
1243 //------------------------------------------------------------------------------
1245 //------------------------------------------------------------------------------
1246 int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item)
1248 QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1249 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1250 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1255 //------------------------------------------------------------------------------
1257 //------------------------------------------------------------------------------
1258 QTreeWidgetItem* vvMainWindow::GetItemFromSlicerManager(vvSlicerManager* sm)
1260 QString id = sm->GetId().c_str();
1261 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1262 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1263 return DataTree->topLevelItem(i);
1267 //------------------------------------------------------------------------------
1269 //------------------------------------------------------------------------------
1270 void vvMainWindow::DisplayChanged(QTreeWidgetItem *clicked_item, int column)
1272 int index = GetSlicerIndexFromItem(clicked_item);
1273 if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
1275 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1276 //Trick to avoid redoing twice the job for a key (sr)
1277 mSlicerManagers[i]->GetSlicer(column-1)->GetRenderWindow()-> GetInteractor()->SetKeySym("Crap");
1279 QTreeWidgetItem* current_row=DataTree->topLevelItem(i);
1280 if (DataTree->topLevelItem(index) == current_row) {
1281 vvSlicer* clicked_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1282 if (current_row == clicked_item) {
1283 //If we just activated a slicer
1284 if (current_row->data(column,Qt::CheckStateRole).toInt() > 0) {
1285 mSlicerManagers[i]->UpdateSlicer(column-1,clicked_item->data(column,Qt::CheckStateRole).toInt());
1286 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1287 DisplaySliders(i,column-1);
1288 std::map<std::string,int> overlay_counts;
1289 for (int child = 0; child < current_row->childCount(); child++) {
1290 std::string overlay_type =
1291 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1292 overlay_counts[overlay_type]++;
1293 current_row->child(child)->setData(column,Qt::CheckStateRole,
1294 current_row->data(column,Qt::CheckStateRole));
1295 clicked_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,true);
1297 } else { //We don't allow simply desactivating a slicer
1298 clicked_item->setData(column,Qt::CheckStateRole,2);
1302 //if we clicked on the vector(or overlay) and not the image
1304 if (clicked_item->data(column,Qt::CheckStateRole).toInt()) {
1305 current_row->setData(column,Qt::CheckStateRole,2);
1306 mSlicerManagers[i]->UpdateSlicer(column-1,2);
1307 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1308 DisplaySliders(i,column-1);
1310 int vis = clicked_item->data(column,Qt::CheckStateRole).toInt();
1311 std::string overlay_type = clicked_item->data(1,Qt::UserRole).toString().toStdString();
1312 int overlay_index=0;
1313 for (int child = 0; child < current_row->childCount(); child++) {
1314 if (current_row->child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1316 if (current_row->child(child) == clicked_item) break;
1318 clicked_slicer->SetActorVisibility(
1319 clicked_item->data(1,Qt::UserRole).toString().toStdString(), overlay_index-1,vis);
1321 } else if (current_row->data(column,Qt::CheckStateRole).toInt() > 0) {
1322 current_row->setData(column,Qt::CheckStateRole,0);
1323 mSlicerManagers[i]->UpdateSlicer(column-1,0);
1324 std::map<std::string,int> overlay_counts;
1325 for (int child = 0; child < current_row->childCount(); child++) {
1326 std::string overlay_type =
1327 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1328 overlay_counts[overlay_type]++;
1329 current_row->child(child)->setData(column,Qt::CheckStateRole,0);
1330 vvSlicer * current_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1331 current_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,false);
1334 //mSlicerManagers[i]->SetColorMap(-1);
1335 mSlicerManagers[i]->SetColorMap();
1337 mSlicerManagers[index]->GetSlicer(column-1)->Render();
1339 //------------------------------------------------------------------------------
1341 void vvMainWindow::InitSlicers()
1343 if (mSlicerManagers.size()) {
1344 mSlicerManagers.back()->GenerateDefaultLookupTable();
1346 mSlicerManagers.back()->SetSlicerWindow(0,NOViewWidget->GetRenderWindow());
1347 mSlicerManagers.back()->SetSlicerWindow(1,NEViewWidget->GetRenderWindow());
1348 mSlicerManagers.back()->SetSlicerWindow(2,SOViewWidget->GetRenderWindow());
1349 mSlicerManagers.back()->SetSlicerWindow(3,SEViewWidget->GetRenderWindow());
1353 //------------------------------------------------------------------------------
1354 void vvMainWindow::InitDisplay()
1356 if (mSlicerManagers.size()) {
1357 //BE CAREFUL : this is absolutely necessary to set the interactor style
1358 //in order to have the same style instanciation for all SlicerManagers in
1360 for (int j = 0; j < 4; j++) {
1361 vvInteractorStyleNavigator* style = vvInteractorStyleNavigator::New();
1362 style->SetAutoAdjustCameraClippingRange(1);
1363 bool AlreadySelected = false;
1364 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1365 mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
1367 //select the image only if previous are not selected
1368 if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1) {
1369 mSlicerManagers[i]->UpdateSlicer(j,1);
1370 AlreadySelected = true;
1371 } else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected) {
1372 if (DataTree->selectedItems().size() == 0)
1373 DataTree->topLevelItem(i)->setSelected(1);
1374 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
1375 mSlicerManagers[i]->UpdateSlicer(j,1);
1376 DisplaySliders(i,j);
1378 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,0);
1379 mSlicerManagers[i]->UpdateSlicer(j,0);
1386 //------------------------------------------------------------------------------
1388 //------------------------------------------------------------------------------
1389 void vvMainWindow::DisplaySliders(int slicer, int window)
1392 mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
1393 int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
1397 tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
1398 int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetTSlice();
1399 bool showHorizontal = false;
1400 bool showVertical = false;
1401 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1402 || (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 2
1403 && mSlicerManagers[slicer]->GetType() != IMAGEWITHTIME
1404 && mSlicerManagers[slicer]->GetType() != MERGEDWITHTIME))
1405 showVertical = true;
1406 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1407 || mSlicerManagers[slicer]->GetType() == IMAGEWITHTIME
1408 || mSlicerManagers[slicer]->GetType() == MERGEDWITHTIME)
1409 showHorizontal = true;
1412 verticalSliders[window]->show();
1414 verticalSliders[window]->hide();
1415 verticalSliders[window]->setRange(range[0],range[1]);
1416 verticalSliders[window]->setValue(position);
1419 horizontalSliders[window]->show();
1421 horizontalSliders[window]->hide();
1422 horizontalSliders[window]->setRange(tRange[0],tRange[1]);
1423 horizontalSliders[window]->setValue(tPosition);
1425 //------------------------------------------------------------------------------
1427 //------------------------------------------------------------------------------
1428 void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column)
1430 int index = GetSlicerIndexFromItem(item);
1432 if (DataTree->topLevelItem(index) != item) {
1433 QString warning = "Do you really want to close the overlay : ";
1434 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1435 QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
1437 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1438 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1439 if (msgBox.exec() == QMessageBox::AcceptRole) {
1440 std::string overlay_type=item->data(1,Qt::UserRole).toString().toStdString();
1441 int overlay_index=0;
1442 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++) {
1443 if (DataTree->topLevelItem(index)->\
1444 child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1446 if (DataTree->topLevelItem(index)->child(child) == item) break;
1448 mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
1449 mSlicerManagers[index]->SetColorMap(0);
1450 DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
1451 mSlicerManagers[index]->Render();
1453 } else if (DataTree->topLevelItemCount() <= 1) {
1454 QString warning = "Do you really want to close the image : ";
1455 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1456 warning += "\nThis is the last image, you're about to close vv !!!";
1457 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1459 msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
1460 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1461 if (msgBox.exec() == QMessageBox::AcceptRole) {
1465 QString warning = "Do you really want to close the image : ";
1466 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1467 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1469 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1470 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1471 if (msgBox.exec() == QMessageBox::AcceptRole) {
1473 // Tell tools that we close an image
1474 emit AnImageIsBeingClosed(mSlicerManagers[index]);
1476 std::vector<vvSlicerManager*>::iterator Manageriter = mSlicerManagers.begin();
1477 DataTree->takeTopLevelItem(index);
1478 for (int i = 0; i < index; i++) {
1481 linkPanel->removeImage(index);
1482 mSlicerManagers[index]->RemoveActors();
1483 delete mSlicerManagers[index];
1484 mSlicerManagers.erase(Manageriter);
1491 //------------------------------------------------------------------------------
1493 //------------------------------------------------------------------------------
1494 void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column)
1496 // int index = GetSlicerIndexFromItem(item);
1497 // QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1498 // if (item->data(1,Qt::UserRole).toString() == "vector")
1499 // mSlicerManagers[index]->ReloadVF();
1501 // mSlicerManagers[index]->Reload();
1503 // QApplication::restoreOverrideCursor();
1504 int index = GetSlicerIndexFromItem(item);
1505 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1506 QString role=item->data(1,Qt::UserRole).toString();
1507 if ( role == "vector")
1508 mSlicerManagers[index]->ReloadVF();
1509 else if (role == "overlay")
1510 mSlicerManagers[index]->ReloadOverlay();
1511 else if (role == "fusion")
1512 mSlicerManagers[index]->ReloadFusion();
1514 mSlicerManagers[index]->Reload();
1516 // Update view and info
1518 mSlicerManagers[index]->Render();
1519 QApplication::restoreOverrideCursor();
1521 //------------------------------------------------------------------------------
1523 // void vvMainWindow::CropImage()
1525 // int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1526 // vvCropDialog crop(mSlicerManagers,index);
1528 // AddImage(crop.GetOutput(),"cropped.mhd");
1531 //------------------------------------------------------------------------------
1532 void vvMainWindow::SplitImage()
1534 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1535 int dim = mSlicerManagers[index]->GetDimension();
1536 QString warning = "Do you really want to split the ";
1537 warning += QString::number(dim) + "D image ";
1538 warning += DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString() + " into ";
1539 warning += QString::number(mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetSize()[dim-1]) + " ";
1540 warning += QString::number(dim-1) + "D images.";
1541 QMessageBox msgBox(QMessageBox::Warning, tr("Split Image"),
1543 msgBox.addButton(tr("Split"), QMessageBox::AcceptRole);
1544 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1545 if (msgBox.exec() == QMessageBox::AcceptRole) {
1546 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1548 std::string filename = DataTree->selectedItems()[0]->data(0,Qt::UserRole).toString().toStdString();
1549 int numberOfSlice = mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetSize()[dim-1];
1550 std::string path = itksys::SystemTools::GetFilenamePath(
1553 path += DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString().toStdString();
1555 path += itksys::SystemTools::GetFilenameLastExtension(
1558 typedef itk::NumericSeriesFileNames NameGeneratorType;
1559 NameGeneratorType::Pointer nameGenerator = NameGeneratorType::New();
1560 nameGenerator->SetSeriesFormat(path.c_str());
1561 nameGenerator->SetStartIndex(0);
1562 nameGenerator->SetEndIndex(numberOfSlice-1);
1563 nameGenerator->SetIncrementIndex(1);
1565 for (int i = 0; i < numberOfSlice; i++) {
1566 vvSlicerManager* imageManager = new vvSlicerManager(4);
1567 imageManager->SetExtractedImage(nameGenerator->GetFileNames()[i],
1568 mSlicerManagers[index]->GetSlicer(0)->GetImage(), i);
1569 mSlicerManagers.push_back(imageManager);
1571 //create an item in the tree with good settings
1572 QTreeWidgetItem *item = new QTreeWidgetItem();
1573 item->setData(0,Qt::UserRole,nameGenerator->GetFileNames()[i].c_str());
1574 std::string fileI = itksys::SystemTools::GetFilenameWithoutLastExtension(
1575 nameGenerator->GetFileNames()[i]).c_str();
1576 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileI.c_str());
1577 for (int j = 1; j <= 4; j++) {
1578 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1579 DataTree->topLevelItem(i)->setData(j,Qt::CheckStateRole,0);
1581 item->setData(j,Qt::CheckStateRole,2);
1584 //Create the buttons for reload and close
1585 QTreePushButton* cButton = new QTreePushButton;
1586 cButton->setItem(item);
1587 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1588 cButton->setToolTip(tr("close image"));
1589 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1590 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1591 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1593 QTreePushButton* rButton = new QTreePushButton;
1594 rButton->setItem(item);
1595 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1596 rButton->setToolTip(tr("reload image"));
1597 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1598 rButton->setEnabled(false);
1599 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1600 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1602 DataTree->addTopLevelItem(item);
1603 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1604 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1606 //set the id of the image
1607 QString id = nameGenerator->GetFileNames()[i].c_str() + QString::number(mSlicerManagers.size()-1);
1608 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1609 mSlicerManagers.back()->SetId(id.toStdString());
1610 linkPanel->addImage(fileI, id.toStdString());
1611 connect(mSlicerManagers.back(),SIGNAL(currentImageChanged(std::string)),
1612 this,SLOT(CurrentImageChanged(std::string)));
1613 connect(mSlicerManagers.back(),SIGNAL(
1614 UpdatePosition(int, double, double, double, double, double, double, double)),this,
1615 SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
1616 connect(mSlicerManagers.back(),SIGNAL(UpdateVector(int, double, double, double, double)),
1617 this, SLOT(VectorChanged(int,double,double,double, double)));
1618 connect(mSlicerManagers.back(),SIGNAL(UpdateOverlay(int, double, double)),
1619 this, SLOT(OverlayChanged(int,double,double)));
1620 connect(mSlicerManagers.back(),SIGNAL(UpdateFusion(int, double)),
1621 this, SLOT(FusionChanged(int,double)));
1622 connect(mSlicerManagers.back(),SIGNAL(UpdateWindows(int, int, int)),
1623 this,SLOT(WindowsChanged(int, int, int)));
1624 connect(mSlicerManagers.back(),SIGNAL(WindowLevelChanged(double, double,int, int)),
1625 this,SLOT(WindowLevelChanged(double, double, int, int)));
1626 connect(mSlicerManagers.back(),SIGNAL(UpdateSlice(int,int)),
1627 this,SLOT(UpdateSlice(int,int)));
1628 connect(mSlicerManagers.back(),SIGNAL(UpdateTSlice(int, int)),
1629 this,SLOT(UpdateTSlice(int, int)));
1630 connect(mSlicerManagers.back(),SIGNAL(UpdateSliceRange(int,int,int,int,int)),
1631 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
1632 connect(mSlicerManagers.back(),SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
1633 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
1634 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
1636 qApp->processEvents();
1639 qApp->processEvents();
1641 QApplication::restoreOverrideCursor();
1643 QApplication::restoreOverrideCursor();
1644 QString error = "Cannot split file (dimensions must be greater than 2) ";
1645 QMessageBox::information(this,tr("Splitting problem"),error);
1649 //------------------------------------------------------------------------------
1651 //------------------------------------------------------------------------------
1652 void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value)
1654 infoPanel->setCurrentInfo(visibility,x,y,z,X,Y,Z,value);
1656 //------------------------------------------------------------------------------
1658 //------------------------------------------------------------------------------
1659 void vvMainWindow::VectorChanged(int visibility,double x, double y, double z, double value)
1661 overlayPanel->getCurrentVectorInfo(visibility,x,y,z,value);
1663 //------------------------------------------------------------------------------
1665 //------------------------------------------------------------------------------
1666 void vvMainWindow::OverlayChanged(int visibility, double valueOver, double valueRef)
1668 overlayPanel->getCurrentOverlayInfo(visibility,valueOver, valueRef);
1670 //------------------------------------------------------------------------------
1672 //------------------------------------------------------------------------------
1673 void vvMainWindow::FusionChanged(int visibility, double value)
1675 overlayPanel->getCurrentFusionInfo(visibility,value);
1677 //------------------------------------------------------------------------------
1679 //------------------------------------------------------------------------------
1680 void vvMainWindow::WindowsChanged(int window, int view, int slice)
1682 infoPanel->setViews(window, view, slice);
1684 //------------------------------------------------------------------------------
1686 //------------------------------------------------------------------------------
1687 void vvMainWindow::WindowLevelChanged(double window, double level,int preset,int colormap)
1689 windowSpinBox->setValue(window);
1690 levelSpinBox->setValue(level);
1691 colorMapComboBox->setCurrentIndex(colormap);
1692 presetComboBox->setCurrentIndex(preset);
1694 //------------------------------------------------------------------------------
1696 //------------------------------------------------------------------------------
1697 void vvMainWindow::WindowLevelEdited()
1699 presetComboBox->setCurrentIndex(6);
1700 UpdateWindowLevel();
1702 //------------------------------------------------------------------------------
1704 //------------------------------------------------------------------------------
1705 void vvMainWindow::UpdateWindowLevel()
1707 if (DataTree->selectedItems().size()) {
1708 if (presetComboBox->currentIndex() == 7) //For ventilation
1709 colorMapComboBox->setCurrentIndex(5);
1710 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1711 mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
1712 mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
1713 mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
1714 mSlicerManagers[index]->Render();
1717 //------------------------------------------------------------------------------
1719 //------------------------------------------------------------------------------
1720 void vvMainWindow::UpdateColorMap()
1722 if (DataTree->selectedItems().size()) {
1723 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1724 mSlicerManagers[index]->SetColorMap(colorMapComboBox->currentIndex());
1725 mSlicerManagers[index]->Render();
1728 //------------------------------------------------------------------------------
1729 void vvMainWindow::SwitchWindowLevel()
1731 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1732 int window = mSlicerManagers[index]->GetColorWindow();
1733 presetComboBox->setCurrentIndex(6);
1734 windowSpinBox->setValue(-window);
1735 UpdateWindowLevel();
1737 //------------------------------------------------------------------------------
1739 //------------------------------------------------------------------------------
1740 void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
1742 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1743 if (mSlicerManagers[i]->GetId() == id) {
1744 //mSlicerManagers[i]->SetTSlice(temps);
1745 mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
1746 mSlicerManagers[i]->UpdateViews(0,slicer);
1751 //------------------------------------------------------------------------------
1753 //------------------------------------------------------------------------------
1754 void vvMainWindow::ShowContextMenu(QPoint point)
1756 if (!DataTree->selectedItems().size()) {
1757 contextActions[1]->setEnabled(0);
1758 contextActions[2]->setEnabled(0);
1759 contextActions[3]->setEnabled(0);
1760 contextActions[4]->setEnabled(0);
1761 contextActions[5]->setEnabled(0);
1762 contextActions[6]->setEnabled(0);
1763 contextActions[7]->setEnabled(0);
1765 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1766 contextActions[1]->setEnabled(1);
1767 contextActions[2]->setEnabled(
1768 DataTree->itemWidget(DataTree->selectedItems()[0],
1769 COLUMN_RELOAD_IMAGE)->isEnabled());
1770 contextActions[3]->setEnabled(1);
1771 contextActions[5]->setEnabled(1);
1772 contextActions[6]->setEnabled(1);
1773 contextActions[7]->setEnabled(1);
1775 if (mSlicerManagers[index]->GetDimension() < 3)
1776 contextActions[4]->setEnabled(0);
1778 contextActions[4]->setEnabled(1);
1780 contextMenu.exec(QCursor::pos());
1782 //------------------------------------------------------------------------------
1784 //------------------------------------------------------------------------------
1785 void vvMainWindow::CloseImage()
1787 CloseImage(DataTree->selectedItems()[0],0);
1789 //------------------------------------------------------------------------------
1791 //------------------------------------------------------------------------------
1792 void vvMainWindow::ReloadImage()
1794 ReloadImage(DataTree->selectedItems()[0],0);
1796 //------------------------------------------------------------------------------
1798 //------------------------------------------------------------------------------
1799 void vvMainWindow::SelectOverlayImage()
1801 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1803 //check if one overlay image is added
1804 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1805 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay") {
1806 QString error = "Cannot add more than one compared image\n";
1807 error += "Please remove first ";
1808 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1809 QMessageBox::information(this,tr("Problem adding compared image !"),error);
1813 QString Extensions = EXTENSIONS;
1814 Extensions += ";;All Files (*)";
1815 QString file = QFileDialog::getOpenFileName(this,tr("Load Overlay image"),mInputPathName,Extensions);
1816 if (!file.isEmpty())
1817 AddOverlayImage(index,file);
1819 //------------------------------------------------------------------------------
1821 //------------------------------------------------------------------------------
1822 void vvMainWindow::AddOverlayImage(int index, QString file)
1825 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1826 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1827 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1828 reader->SetFileName(file.toStdString().c_str());
1829 reader->ReadImageInformation();
1830 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1831 int dimension = reader->GetNumberOfDimensions();
1832 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1833 vvProgressDialog progress("Opening " + file.toStdString());
1834 qApp->processEvents();
1836 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1837 if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component)) {
1838 //create an item in the tree with good settings
1839 QTreeWidgetItem *item = new QTreeWidgetItem();
1840 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1841 item->setData(1,Qt::UserRole,tr("overlay"));
1842 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
1843 qApp->processEvents();
1845 for (int j = 1; j <= 4; j++) {
1846 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1847 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("overlay",0,
1848 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1851 //Create the buttons for reload and close
1852 qApp->processEvents();
1853 QTreePushButton* cButton = new QTreePushButton;
1854 cButton->setItem(item);
1855 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1856 cButton->setToolTip(tr("close image"));
1857 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1858 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1859 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1861 QTreePushButton* rButton = new QTreePushButton;
1862 rButton->setItem(item);
1863 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1864 rButton->setToolTip(tr("reload image"));
1865 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1866 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1867 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1869 DataTree->topLevelItem(index)->setExpanded(1);
1870 DataTree->topLevelItem(index)->addChild(item);
1871 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1872 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1874 //set the id of the image
1875 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1876 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1878 qApp->processEvents();
1880 QApplication::restoreOverrideCursor();
1882 QApplication::restoreOverrideCursor();
1883 QString error = "Cannot import the new image.\n";
1884 error += mSlicerManagers[index]->GetLastError().c_str();
1885 QMessageBox::information(this,tr("Problem reading image !"),error);
1889 void vvMainWindow::AddFusionImage()
1891 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1893 //check if one fusion image is added
1894 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1895 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") {
1896 QString error = "Cannot add more than one fusion image\n";
1897 error += "Please remove first ";
1898 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1899 QMessageBox::information(this,tr("Problem adding fusion image !"),error);
1903 QString Extensions = EXTENSIONS;
1904 Extensions += ";;All Files (*)";
1905 QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
1906 if (!file.isEmpty()) {
1907 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1908 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1909 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1910 reader->SetFileName(file.toStdString().c_str());
1911 reader->ReadImageInformation();
1912 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1914 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1915 vvProgressDialog progress("Opening fusion");
1916 qApp->processEvents();
1918 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1919 if (mSlicerManagers[index]->SetFusion(file.toStdString(),
1920 reader->GetNumberOfDimensions(), component)) {
1921 //create an item in the tree with good settings
1922 QTreeWidgetItem *item = new QTreeWidgetItem();
1923 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1924 item->setData(1,Qt::UserRole,tr("fusion"));
1925 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
1926 qApp->processEvents();
1928 for (int j = 1; j <= 4; j++) {
1929 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1930 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0,
1931 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1934 //Create the buttons for reload and close
1935 qApp->processEvents();
1936 QTreePushButton* cButton = new QTreePushButton;
1937 cButton->setItem(item);
1938 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1939 cButton->setToolTip(tr("close image"));
1940 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1941 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1942 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1944 QTreePushButton* rButton = new QTreePushButton;
1945 rButton->setItem(item);
1946 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1947 rButton->setToolTip(tr("reload image"));
1948 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1949 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1950 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1952 DataTree->topLevelItem(index)->setExpanded(1);
1953 DataTree->topLevelItem(index)->addChild(item);
1954 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1955 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1957 //set the id of the image
1958 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1959 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1961 qApp->processEvents();
1963 QApplication::restoreOverrideCursor();
1965 QApplication::restoreOverrideCursor();
1966 QString error = "Cannot import the new image.\n";
1967 error += mSlicerManagers[index]->GetLastError().c_str();
1968 QMessageBox::information(this,tr("Problem reading image !"),error);
1971 QString error = "Cannot import the new image.\n";
1972 QMessageBox::information(this,tr("Problem reading image !"),error);
1976 //------------------------------------------------------------------------------
1979 //------------------------------------------------------------------------------
1980 void vvMainWindow::OpenField()
1982 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1983 //check if a vector field has already been added
1984 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1985 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector") {
1986 QString error = "Cannot add more than one vector field\n";
1987 error += "Please remove first ";
1988 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1989 QMessageBox::information(this,tr("Problem adding vector field!"),error);
1993 QString Extensions = "Images ( *.mhd)";
1994 Extensions += ";;Images ( *.vf)";
1995 QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
1996 if (!file.isEmpty())
1997 AddField(file,index);
1999 //------------------------------------------------------------------------------
2002 //------------------------------------------------------------------------------
2003 void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
2005 //create an item in the tree with good settings
2006 QTreeWidgetItem *item = new QTreeWidgetItem();
2007 item->setData(0,Qt::UserRole,filename.toStdString().c_str());
2008 item->setData(1,Qt::UserRole,tr("vector"));
2009 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename);
2010 qApp->processEvents();
2012 for (int j = 1; j <= 4; j++) {
2013 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2014 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("vector",0,
2015 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
2018 //Create the buttons for reload and close
2019 qApp->processEvents();
2020 QTreePushButton* cButton = new QTreePushButton;
2021 cButton->setItem(item);
2022 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2023 cButton->setToolTip(tr("close vector field"));
2024 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2025 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2026 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2028 QTreePushButton* rButton = new QTreePushButton;
2029 rButton->setItem(item);
2030 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2031 rButton->setToolTip(tr("reload vector field"));
2032 rButton->setEnabled(from_disk);
2033 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2034 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2035 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2037 DataTree->topLevelItem(index)->setExpanded(1);
2038 DataTree->topLevelItem(index)->addChild(item);
2039 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2040 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2042 //set the id of the image
2043 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2044 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2046 qApp->processEvents();
2048 QApplication::restoreOverrideCursor();
2050 //------------------------------------------------------------------------------
2053 //------------------------------------------------------------------------------
2054 void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
2056 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2057 vvSlicerManager* imageManager = mSlicerManagers[index];
2058 if (imageManager->SetVF(vf,file.toStdString())) {
2059 AddFieldEntry(file,index,false);
2061 QString error = "Cannot import the vector field for this image.\n";
2062 error += imageManager->GetLastError().c_str();
2063 QMessageBox::information(this,tr("Problem reading VF !"),error);
2065 QApplication::restoreOverrideCursor();
2067 //------------------------------------------------------------------------------
2070 //------------------------------------------------------------------------------
2071 void vvMainWindow::AddField(QString file,int index)
2073 if (QFile::exists(file)) {
2074 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2076 //init the progress events
2077 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2078 vvProgressDialog progress("Opening " + file.toStdString());
2079 qApp->processEvents();
2081 //read the vector and put it in the current mSlicerManager
2082 vvSlicerManager* imageManager = mSlicerManagers[index];
2083 qApp->processEvents();
2085 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2086 if (imageManager->SetVF(file.toStdString())) {
2087 imageManager->Render();
2088 AddFieldEntry(file,index,true);
2090 QApplication::restoreOverrideCursor();
2091 QString error = "Cannot import the vector field for this image.\n";
2092 error += imageManager->GetLastError().c_str();
2093 QMessageBox::information(this,tr("Problem reading VF !"),error);
2096 QMessageBox::information(this,tr("Problem reading VF !"),"File doesn't exist!");
2099 //------------------------------------------------------------------------------
2102 //------------------------------------------------------------------------------
2103 void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width)
2105 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2106 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
2107 for (int i = 0; i < 4; i++) {
2108 mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
2109 mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
2110 mSlicerManagers[index]->GetSlicer(i)->SetVFWidth(width);
2112 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
2114 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(0);
2118 //------------------------------------------------------------------------------
2121 //------------------------------------------------------------------------------
2122 void vvMainWindow::SetOverlayProperty(int color)
2124 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2125 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
2126 mSlicerManagers[index]->SetOverlayColor(color);
2127 mSlicerManagers[index]->SetColorMap(0);
2128 mSlicerManagers[index]->Render();
2131 //------------------------------------------------------------------------------
2133 //------------------------------------------------------------------------------
2134 void vvMainWindow::SetFusionProperty(int opacity, int colormap,double window, double level)
2136 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2137 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
2138 mSlicerManagers[index]->SetFusionOpacity(opacity);
2139 mSlicerManagers[index]->SetFusionColorMap(colormap);
2140 mSlicerManagers[index]->SetFusionWindow(window);
2141 mSlicerManagers[index]->SetFusionLevel(level);
2142 mSlicerManagers[index]->SetColorMap(0);
2143 mSlicerManagers[index]->Render();
2146 //------------------------------------------------------------------------------
2148 //------------------------------------------------------------------------------
2149 void vvMainWindow::SaveAs()
2151 if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
2152 QMessageBox::warning(this,tr("Unsupported type"),tr("Sorry, saving a vector field is unsupported for the moment"));
2156 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2157 int dimension = mSlicerManagers[index]->GetDimension();
2158 QStringList OutputListeFormat;
2159 OutputListeFormat.clear();
2160 if (dimension == 1) {
2161 OutputListeFormat.push_back(".mhd");
2163 if (dimension == 2) {
2164 OutputListeFormat.push_back(".bmp");
2165 OutputListeFormat.push_back(".png");
2166 OutputListeFormat.push_back(".jpeg");
2167 OutputListeFormat.push_back(".tif");
2168 OutputListeFormat.push_back(".mhd");
2169 OutputListeFormat.push_back(".hdr");
2170 OutputListeFormat.push_back(".vox");
2171 } else if (dimension == 3) {
2172 OutputListeFormat.push_back(".mhd");
2173 OutputListeFormat.push_back(".hdr");
2174 OutputListeFormat.push_back(".vox");
2175 } else if (dimension == 4) {
2176 OutputListeFormat.push_back(".mhd");
2178 QString Extensions = "AllFiles(*.*)";
2179 for (int i = 0; i < OutputListeFormat.count(); i++) {
2180 Extensions += ";;Images ( *";
2181 Extensions += OutputListeFormat[i];
2184 QString fileName = QFileDialog::getSaveFileName(this,
2186 mSlicerManagers[index]->GetFileName().c_str(),
2188 if (!fileName.isEmpty()) {
2189 std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
2190 if (OutputListeFormat.contains(
2191 fileformat.c_str())) {
2192 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2193 std::string action = "Saving";
2194 vvProgressDialog progress("Saving "+fileName.toStdString());
2195 qApp->processEvents();
2196 vvImageWriter *writer = new vvImageWriter;
2197 writer->SetOutputFileName(fileName.toStdString());
2198 writer->SetInput(mSlicerManagers[index]->GetImage());
2200 QApplication::restoreOverrideCursor();
2201 if (writer->GetLastError().size()) {
2202 QString error = "Saving did not succeed\n";
2203 error += writer->GetLastError().c_str();
2204 QMessageBox::information(this,tr("Saving Problem"),error);
2208 QString error = fileformat.c_str();
2209 if (error.isEmpty())
2210 error += "no file format specified !";
2212 error += " format unknown !!!\n";
2213 QMessageBox::information(this,tr("Saving Problem"),error);
2218 //------------------------------------------------------------------------------
2221 //------------------------------------------------------------------------------
2222 void vvMainWindow::AddLink(QString image1,QString image2)
2224 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2225 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2226 mSlicerManagers[i]->AddLink(image2.toStdString());
2228 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2229 mSlicerManagers[i]->AddLink(image1.toStdString());
2233 //------------------------------------------------------------------------------
2236 //------------------------------------------------------------------------------
2237 void vvMainWindow::RemoveLink(QString image1,QString image2)
2239 // DD("vvMainWindow:RemoveLink");
2240 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2241 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2242 mSlicerManagers[i]->RemoveLink(image2.toStdString());
2244 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2245 mSlicerManagers[i]->RemoveLink(image1.toStdString());
2249 //------------------------------------------------------------------------------
2251 //------------------------------------------------------------------------------
2252 void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset)
2255 while(sm != mSlicerManagers[index])
2257 index = (index+offset) % mSlicerManagers.size();
2259 QTreeWidgetItem* item = GetItemFromSlicerManager(mSlicerManagers[index]);
2260 //CurrentImageChanged(mSlicerManagers[index]->GetId()); //select new image
2261 item->setData(slicer+1,Qt::CheckStateRole,2); //change checkbox
2262 DisplayChanged(item,slicer+1);
2264 //------------------------------------------------------------------------------
2266 void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
2268 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2269 if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
2270 for (int j = 0; j < 4; j++) {
2271 mSlicerManagers[i]->SetTSliceInSlicer(value,j);
2272 //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
2273 //UpdateTSlice(j,value);
2275 mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
2280 //------------------------------------------------------------------------------
2283 //------------------------------------------------------------------------------
2284 void vvMainWindow::NOHorizontalSliderMoved()
2286 // if (mCurrentTime == NOHorizontalSlider->value()) return;
2287 HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
2288 // mCurrentTime = NOHorizontalSlider->value();
2290 //------------------------------------------------------------------------------
2293 //------------------------------------------------------------------------------
2294 void vvMainWindow::NEHorizontalSliderMoved()
2296 // if (mCurrentTime == NEHorizontalSlider->value()) return;
2297 HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
2298 // mCurrentTime = NEHorizontalSlider->value();
2300 //------------------------------------------------------------------------------
2303 //------------------------------------------------------------------------------
2304 void vvMainWindow::SOHorizontalSliderMoved()
2306 // if (mCurrentTime == SOHorizontalSlider->value()) return;
2307 HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
2308 // mCurrentTime = SOHorizontalSlider->value();
2310 //------------------------------------------------------------------------------
2313 //------------------------------------------------------------------------------
2314 void vvMainWindow::SEHorizontalSliderMoved()
2316 // if (mCurrentTime == SEHorizontalSlider->value()) return;
2317 HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
2318 // mCurrentTime = SEHorizontalSlider->value();
2320 //------------------------------------------------------------------------------
2322 //------------------------------------------------------------------------------
2323 void vvMainWindow::NOVerticalSliderChanged()
2325 static int value=-1;
2326 if (value == NOVerticalSlider->value()) return;
2327 else value = NOVerticalSlider->value();
2328 // int value = NOVerticalSlider->value();
2329 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
2331 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
2333 if (mSlicerManagers[i]->GetSlicer(0)->GetSlice() != value) {
2334 mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
2335 mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
2337 // If nor Update/Render -> slider not work
2338 // only render = ok navigation, but for contour Update needed but slower ?
2340 mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
2341 //mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2347 //------------------------------------------------------------------------------
2350 //------------------------------------------------------------------------------
2351 void vvMainWindow::NEVerticalSliderChanged()
2353 static int value=-1;
2354 if (value == NEVerticalSlider->value()) return;
2355 else value = NEVerticalSlider->value();
2356 // int value = NEVerticalSlider->value();
2357 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2358 if (DataTree->topLevelItem(i)->data(COLUMN_UR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2359 if (mSlicerManagers[i]->GetSlicer(1)->GetSlice() != value) {
2360 mSlicerManagers[i]->GetSlicer(1)->SetSlice(value);
2361 mSlicerManagers[i]->VerticalSliderHasChanged(1, value);
2362 mSlicerManagers[i]->UpdateSlice(1);
2363 //mSlicerManagers[i]->GetSlicer(1)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2369 //------------------------------------------------------------------------------
2372 //------------------------------------------------------------------------------
2373 void vvMainWindow::SOVerticalSliderChanged()
2375 // DD("SOVerticalSliderChanged");
2376 static int value=-1;
2378 // DD(SOVerticalSlider->value());
2379 if (value == SOVerticalSlider->value()) return;
2380 else value = SOVerticalSlider->value();
2381 //int value = SOVerticalSlider->value();
2382 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2383 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2384 if (mSlicerManagers[i]->GetSlicer(2)->GetSlice() != value) {
2385 mSlicerManagers[i]->GetSlicer(2)->SetSlice(value);
2386 mSlicerManagers[i]->VerticalSliderHasChanged(2, value);
2387 mSlicerManagers[i]->UpdateSlice(2);
2388 //mSlicerManagers[i]->GetSlicer(2)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2390 // else { DD("avoid SOVerticalSlider slicer update"); }
2395 //------------------------------------------------------------------------------
2398 //------------------------------------------------------------------------------
2399 void vvMainWindow::SEVerticalSliderChanged()
2401 static int value=-1;
2402 if (value == SEVerticalSlider->value()) return;
2403 else value = SEVerticalSlider->value();
2404 // int value = SEVerticalSlider->value();
2405 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2406 if (DataTree->topLevelItem(i)->data(COLUMN_DR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2407 if (mSlicerManagers[i]->GetSlicer(3)->GetSlice() != value) {
2408 mSlicerManagers[i]->GetSlicer(3)->SetSlice(value);
2409 mSlicerManagers[i]->VerticalSliderHasChanged(3, value);
2410 mSlicerManagers[i]->UpdateSlice(3);
2411 //mSlicerManagers[i]->GetSlicer(3)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2417 //------------------------------------------------------------------------------
2420 //------------------------------------------------------------------------------
2421 void vvMainWindow::UpdateSlice(int slicer, int slice)
2423 // DD("vvMainWindow::UpdateSlice");
2427 // if (slice != NOVerticalSlider->value())
2428 NOVerticalSlider->setValue(slice);
2431 NEVerticalSlider->setValue(slice);
2434 SOVerticalSlider->setValue(slice);
2437 SEVerticalSlider->setValue(slice);
2441 // DD("vvMainWindow:UpdateSlice END");
2443 //------------------------------------------------------------------------------
2446 //------------------------------------------------------------------------------
2447 void vvMainWindow::UpdateTSlice(int slicer, int slice)
2451 NOHorizontalSlider->setValue(slice);
2454 NEHorizontalSlider->setValue(slice);
2457 SOHorizontalSlider->setValue(slice);
2460 SEHorizontalSlider->setValue(slice);
2464 //------------------------------------------------------------------------------
2467 //------------------------------------------------------------------------------
2468 void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax)
2470 int position = int((min+max)/2);
2471 int tPosition = int((tmin+tmax)/2);
2473 NOVerticalSlider->setValue(position);
2474 NOVerticalSlider->setRange(min,max);
2475 NOHorizontalSlider->setRange(tmin,tmax);
2476 NOHorizontalSlider->setValue(tPosition);
2477 } else if (slicer == 1) {
2478 NEVerticalSlider->setValue(position);
2479 NEVerticalSlider->setRange(min,max);
2480 NEHorizontalSlider->setRange(tmin,tmax);
2481 NEHorizontalSlider->setValue(tPosition);
2482 } else if (slicer == 2) {
2483 SOVerticalSlider->setValue(position);
2484 SOVerticalSlider->setRange(min,max);
2485 SOHorizontalSlider->setRange(tmin,tmax);
2486 SOHorizontalSlider->setValue(tPosition);
2487 } else if (slicer == 3) {
2488 SEVerticalSlider->setValue(position);
2489 SEVerticalSlider->setRange(min,max);
2490 SEHorizontalSlider->setRange(tmin,tmax);
2491 SEHorizontalSlider->setValue(tPosition);
2494 //------------------------------------------------------------------------------
2497 //------------------------------------------------------------------------------
2498 void vvMainWindow::SaveNOScreenshot()
2500 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2501 w2i->SetInput(NOViewWidget->GetRenderWindow());
2503 SaveScreenshot(w2i->GetOutput());
2506 //------------------------------------------------------------------------------
2509 //------------------------------------------------------------------------------
2510 void vvMainWindow::SaveNEScreenshot()
2512 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2513 w2i->SetInput(NEViewWidget->GetRenderWindow());
2515 SaveScreenshot(w2i->GetOutput());
2518 //------------------------------------------------------------------------------
2521 //------------------------------------------------------------------------------
2522 void vvMainWindow::SaveSOScreenshot()
2524 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2525 w2i->SetInput(SOViewWidget->GetRenderWindow());
2527 SaveScreenshot(w2i->GetOutput());
2530 //------------------------------------------------------------------------------
2533 //------------------------------------------------------------------------------
2534 void vvMainWindow::SaveSEScreenshot()
2536 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2537 w2i->SetInput(SEViewWidget->GetRenderWindow());
2539 SaveScreenshot(w2i->GetOutput());
2542 //------------------------------------------------------------------------------
2545 //------------------------------------------------------------------------------
2546 void vvMainWindow::SaveScreenshot(vtkImageData* image)
2548 QString Extensions = "Images( *.png);;";
2549 Extensions += "Images( *.jpg);;";
2550 Extensions += "Images( *.bmp);;";
2551 Extensions += "Images( *.tif);;";
2552 Extensions += "Images( *.ppm)";
2553 QString fileName = QFileDialog::getSaveFileName(this,
2555 itksys::SystemTools::GetFilenamePath(
2556 mSlicerManagers[0]->GetFileName()).c_str(),
2558 if (!fileName.isEmpty()) {
2559 const char *ext = fileName.toStdString().c_str() + strlen(fileName.toStdString().c_str()) - 4;
2560 if (!strcmp(ext, ".bmp")) {
2561 vtkBMPWriter *bmp = vtkBMPWriter::New();
2562 bmp->SetInput(image);
2563 bmp->SetFileName(fileName.toStdString().c_str());
2566 } else if (!strcmp(ext, ".tif")) {
2567 vtkTIFFWriter *tif = vtkTIFFWriter::New();
2568 tif->SetInput(image);
2569 tif->SetFileName(fileName.toStdString().c_str());
2572 } else if (!strcmp(ext, ".ppm")) {
2573 vtkPNMWriter *pnm = vtkPNMWriter::New();
2574 pnm->SetInput(image);
2575 pnm->SetFileName(fileName.toStdString().c_str());
2578 } else if (!strcmp(ext, ".png")) {
2579 vtkPNGWriter *png = vtkPNGWriter::New();
2580 png->SetInput(image);
2581 png->SetFileName(fileName.toStdString().c_str());
2584 } else if (!strcmp(ext, ".jpg")) {
2585 vtkJPEGWriter *jpg = vtkJPEGWriter::New();
2586 jpg->SetInput(image);
2587 jpg->SetFileName(fileName.toStdString().c_str());
2591 QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
2596 //------------------------------------------------------------------------------
2599 //------------------------------------------------------------------------------
2600 void vvMainWindow::GoToCursor()
2602 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2603 for (int column = 1; column < 5; column++) {
2604 if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1) {
2605 double* cursorPos = mSlicerManagers[index]->GetSlicer(column-1)->GetCursorPosition();
2606 mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
2607 cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
2608 mSlicerManagers[index]->UpdateViews(1,column-1);
2609 mSlicerManagers[index]->UpdateLinked(column-1);
2614 //------------------------------------------------------------------------------
2616 //------------------------------------------------------------------------------
2617 void vvMainWindow::PlayPause()
2621 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_play.png")));
2625 int image_number=DataTree->topLevelItemCount();
2627 for (int i=0; i<image_number; i++)
2628 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1) {
2634 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
2635 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2639 //------------------------------------------------------------------------------
2641 //------------------------------------------------------------------------------
2642 void vvMainWindow::PlayNext()
2644 if (playMode && !this->isHidden()) {
2645 int image_number=DataTree->topLevelItemCount();
2646 ///Only play one slicer per SM, and only if the SM is being displayed
2647 for (int i=0; i<image_number; i++)
2648 for (int j=0; j<4; j++)
2649 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1 &&
2650 DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
2651 mSlicerManagers[i]->SetNextTSlice(j);
2654 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2657 //------------------------------------------------------------------------------
2659 void vvMainWindow::ShowLastImage()
2661 if (mSlicerManagers.size() > 1) {
2662 QTreeWidgetItem * item=DataTree->topLevelItem(DataTree->topLevelItemCount()-1);
2663 CurrentImageChanged(mSlicerManagers.back()->GetId()); //select new image
2664 item->setData(1,Qt::CheckStateRole,2); //show the new image in the first panel
2665 DisplayChanged(item,1);
2669 //------------------------------------------------------------------------------
2670 void vvMainWindow::UpdateRenderWindows()
2672 if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
2673 if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
2674 if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
2675 if (SEViewWidget->GetRenderWindow()) SEViewWidget->GetRenderWindow()->Render();
2677 //------------------------------------------------------------------------------
2679 //------------------------------------------------------------------------------
2680 void vvMainWindow::SegmentationOnCurrentImage()
2682 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2684 vvSegmentationDialog segmentation;
2685 segmentation.SetImage(mSlicerManagers[index]->GetSlicer(0)->GetImage());
2686 segmentation.exec();
2688 //------------------------------------------------------------------------------
2690 void vvMainWindow::SurfaceViewerLaunch()
2692 vvSurfaceViewerDialog surfaceViewer;
2693 surfaceViewer.exec();
2696 //------------------------------------------------------------------------------
2697 void vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
2699 vvSlicerManager* slicer_manager = new vvSlicerManager(4);
2700 slicer_manager->SetImage(image);
2701 slicer_manager->SetFilename(filename);
2702 mSlicerManagers.push_back(slicer_manager);
2704 //create an item in the tree with good settings
2705 QTreeWidgetItem *item = new QTreeWidgetItem();
2706 item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
2707 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
2708 qApp->processEvents();
2710 for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1);
2712 //Create the buttons for reload and close
2713 qApp->processEvents();
2714 QTreePushButton* cButton = new QTreePushButton;
2715 cButton->setItem(item);
2716 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2717 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2718 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2719 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2721 QTreePushButton* rButton = new QTreePushButton;
2722 rButton->setItem(item);
2723 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2724 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2725 rButton->setEnabled(0);
2726 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2727 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2729 DataTree->addTopLevelItem(item);
2730 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2731 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2733 //set the id of the image
2734 QString id = slicer_manager->GetFileName().c_str() + QString::number(mSlicerManagers.size()-1);
2735 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2736 mSlicerManagers.back()->SetId(id.toStdString());
2738 linkPanel->addImage(filename, id.toStdString());
2740 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
2741 this, SLOT(CurrentImageChanged(std::string)));
2742 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
2743 this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
2744 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
2745 this, SLOT(VectorChanged(int,double,double,double, double)));
2746 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
2747 this, SLOT(OverlayChanged(int,double,double)));
2748 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
2749 this, SLOT(FusionChanged(int,double)));
2750 connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
2751 this,SLOT(WindowsChanged(int, int, int)));
2752 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
2753 this,SLOT(WindowLevelChanged(double, double, int, int)));
2754 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
2755 this,SLOT(UpdateSlice(int,int)));
2756 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
2757 this,SLOT(UpdateTSlice(int, int)));
2758 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
2759 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
2760 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
2761 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
2762 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
2763 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
2764 connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
2766 qApp->processEvents();
2770 qApp->processEvents();
2772 //------------------------------------------------------------------------------
2775 //------------------------------------------------------------------------------
2776 void vvMainWindow::UpdateCurrentSlicer()
2779 if (DataTree->selectedItems().size() > 0) {
2780 index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2782 mSlicerManagerCurrentIndex = index;
2784 //------------------------------------------------------------------------------