1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ======================================================================-====*/
20 #include <QMessageBox>
21 #include <QInputDialog>
23 #include "QTreePushButton.h"
26 #include "vvMainWindow.h"
27 #include "vvHelpDialog.h"
28 #include "vvDocumentation.h"
29 #include "vvProgressDialog.h"
30 #include "vvQDicomSeriesSelector.h"
31 #include "vvSlicerManager.h"
32 #include "clitkImageCommon.h"
34 #include "vvInteractorStyleNavigator.h"
35 #include "vvImageWriter.h"
36 #include "vvSegmentationDialog.h"
37 #include "vvSurfaceViewerDialog.h"
38 #include "vvDeformationDialog.h"
39 #include "vvImageWarp.h"
41 #include "vvMaximumIntensityProjection.h"
42 #include "vvMidPosition.h"
44 #include "vvStructSelector.h"
45 #include "vvMeshReader.h"
46 #include "vvConstants.h"
50 #include "itkImageFileReader.h"
51 #include "itkByteSwapper.h"
52 #include "itkCommand.h"
53 #include "itkNumericSeriesFileNames.h"
56 #include "vtkImageData.h"
57 #include "vtkImageActor.h"
58 #include "vtkCornerAnnotation.h"
59 #include "vtkRenderWindow.h"
60 #include "vtkRenderWindowInteractor.h"
61 #include "vtkRenderer.h"
62 #include "vtkRendererCollection.h"
63 #include "vtkWindowToImageFilter.h"
64 #include "vtkBMPWriter.h"
65 #include "vtkTIFFWriter.h"
66 #include "vtkPNMWriter.h"
67 #include "vtkPNGWriter.h"
68 #include "vtkJPEGWriter.h"
74 #define COLUMN_UL_VIEW 1
75 #define COLUMN_UR_VIEW 2
76 #define COLUMN_DL_VIEW 3
77 #define COLUMN_DR_VIEW 4
78 #define COLUMN_CLOSE_IMAGE 5
79 #define COLUMN_RELOAD_IMAGE 6
80 #define COLUMN_IMAGE_NAME 7
82 #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.hdr *.vox *.his *.xdr)"
85 0,Qt::UserRole full filename
86 1,Qt::CheckStateRole checkbutton UL View
87 1,Qt::UserRole overlay, fusion or vector
88 2,Qt::CheckStateRole checkbutton UR View
89 3,Qt::CheckStateRole checkbutton DL View
90 4,Qt::CheckStateRole checkbutton DR View
92 5,Qt::UserRole mSlicerManager id*/
94 //------------------------------------------------------------------------------
95 vvMainWindow::vvMainWindow():vvMainWindowBase()
97 setupUi(this); // this sets up the GUI
100 mMenuTools = menuTools;
101 mContextMenu = &contextMenu;
102 mMenuExperimentalTools = menuExperimental;
106 //Init the contextMenu
107 this->setContextMenuPolicy(Qt::CustomContextMenu);
108 contextActions.resize(0);
109 QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
110 tr("O&pen new Image"));
111 actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
112 connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
113 contextActions.push_back(actionOpen_new_image);
114 contextMenu.addSeparator();
116 QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
117 tr("Close Current Image"));
118 connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
119 contextActions.push_back(actionClose_Image);
121 QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
122 tr("Reload Current Image"));
123 connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
124 contextActions.push_back(actionReload_image);
126 QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
127 tr("Save Current Image"));
128 connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
129 contextActions.push_back(actionSave_image);
131 contextMenu.addSeparator();
133 // QAction* actionCrop_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/crop.png")),
134 // tr("Crop Current Image"));
135 // connect(actionCrop_image,SIGNAL(triggered()),this,SLOT(CropImage()));
136 // contextActions.push_back(actionCrop_image);
138 QAction* actionSplit_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/cut.png")),
139 tr("Split Current Image"));
140 connect(actionSplit_image,SIGNAL(triggered()),this,SLOT(SplitImage()));
141 contextActions.push_back(actionSplit_image);
143 contextMenu.addSeparator();
145 contextMenu.addAction(actionAdd_VF_to_current_Image);
146 contextActions.push_back(actionAdd_VF_to_current_Image);
148 QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
149 tr("Add overlay image to current image"));
150 contextMenu.addAction(actionAdd_Overlay_to_current_Image);
151 contextActions.push_back(actionAdd_Overlay_to_current_Image);
153 connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
155 contextMenu.addAction(actionAdd_fusion_image);
156 connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
157 contextActions.push_back(actionAdd_fusion_image);
161 QMenu * m = new QMenu(menubar);
163 // m->setObjectName(QString::fromUtf8("TOTOTO"));
164 contextMenu.addMenu(m);
165 QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
167 QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
171 connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
175 mSlicerManagers.resize(0);
185 header.append("Name");
187 DataTree->setHeaderLabels(header);
188 DataTree->resizeColumnToContents(COLUMN_TREE);
189 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
190 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
191 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
192 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
193 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
194 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
195 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
198 documentation = new vvDocumentation();
199 help_dialog = new vvHelpDialog();
200 dicomSeriesSelector = new vvDicomSeriesSelector();
202 inverseButton->setEnabled(0);
203 actionAdd_Overlay_to_current_Image->setEnabled(0);
204 actionSave_As->setEnabled(0);
205 actionAdd_VF_to_current_Image->setEnabled(0);
206 actionAdd_fusion_image->setEnabled(0);
209 verticalSliders.push_back(NOVerticalSlider);
210 verticalSliders.push_back(NEVerticalSlider);
211 verticalSliders.push_back(SOVerticalSlider);
212 verticalSliders.push_back(SEVerticalSlider);
214 for (int i =0; i < 4; i++)
215 verticalSliders[i]->hide();
217 horizontalSliders.push_back(NOHorizontalSlider);
218 horizontalSliders.push_back(NEHorizontalSlider);
219 horizontalSliders.push_back(SOHorizontalSlider);
220 horizontalSliders.push_back(SEHorizontalSlider);
222 for (int i =0; i < 4; i++)
223 horizontalSliders[i]->hide();
226 connect(NOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOVerticalSliderChanged()));
227 connect(NEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEVerticalSliderChanged()));
228 connect(SOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOVerticalSliderChanged()));
229 connect(SEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEVerticalSliderChanged()));
231 connect(NOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOHorizontalSliderMoved()));
232 connect(NEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEHorizontalSliderMoved()));
233 connect(SOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOHorizontalSliderMoved()));
234 connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved()));
237 connect(actionMaximum_Intensity_Projection,SIGNAL(triggered()),this,SLOT(ComputeMIP()));
238 connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition()));
239 connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration()));
240 connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
241 connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
242 connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
243 connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
244 connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
245 connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
246 connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
247 connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
248 connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
249 connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
250 connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
251 connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
252 connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
254 ///////////////////////////////////////////////
255 connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
256 connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
257 ///////////////////////////////////////////////
259 actionNorth_East_Window->setEnabled(0);
260 actionNorth_West_Window->setEnabled(0);
261 actionSouth_East_Window->setEnabled(0);
262 actionSouth_West_Window->setEnabled(0);
264 connect(actionNorth_East_Window,SIGNAL(triggered()),this,SLOT(SaveNEScreenshot()));
265 connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
266 connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
267 connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
269 connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
270 connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
271 SLOT(DisplayChanged(QTreeWidgetItem*, int)));
273 connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
274 connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
275 connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
276 connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
277 connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
278 connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
281 connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
283 connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
284 connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
285 connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int)),this,SLOT(SetVFProperty(int,int,int,int)));
286 connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int)),this,SLOT(SetOverlayProperty(int)));
287 connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,double,double)),
288 this,SLOT(SetFusionProperty(int,int,double,double)));
289 connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
293 playButton->setEnabled(0);
294 frameRateLabel->setEnabled(0);
295 frameRateSpinBox->setEnabled(0);
296 connect(playButton, SIGNAL(clicked()),this,SLOT(PlayPause()));
297 connect(frameRateSpinBox, SIGNAL(valueChanged(int)),this,SLOT(ChangeFrameRate(int)));
299 goToCursorPushButton->setEnabled(0);
300 connect(goToCursorPushButton, SIGNAL(clicked()),this,SLOT(GoToCursor()));
302 NOViewWidget->hide();
303 NEViewWidget->hide();
304 SOViewWidget->hide();
305 SEViewWidget->hide();
307 //Recently opened files
308 std::list<std::string> recent_files = GetRecentlyOpenedImages();
309 if ( !recent_files.empty() ) {
310 QMenu * rmenu = new QMenu("Recently opened files...");
311 rmenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
312 menuFile->insertMenu(actionOpen_Image_With_Time,rmenu);
313 for (std::list<std::string>::iterator i = recent_files.begin(); i!=recent_files.end(); i++) {
314 QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")),
316 rmenu->addAction(current);
317 connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage()));
321 // Adding all new tools (insertion in the menu)
322 vvToolManager::GetInstance()->InsertToolsInMenu(this);
324 if (!CLITK_EXPERIMENTAL)
325 menuExperimental->menuAction()->setVisible(false);
327 //------------------------------------------------------------------------------
330 //------------------------------------------------------------------------------
331 void vvMainWindow::ComputeMIP()
333 vvMaximumIntensityProjection mip;
334 vvSlicerManager* selected_slicer = mSlicerManagers[GetSlicerIndexFromItem(DataTree->selectedItems()[0])];
335 QFileInfo info(selected_slicer->GetFileName().c_str());
336 mip.Compute(selected_slicer);
338 AddImage(mip.GetOutput(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_mip.mhd");
340 //------------------------------------------------------------------------------
343 //------------------------------------------------------------------------------
344 void vvMainWindow::ComputeMidPosition()
347 int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
348 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
349 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
352 midp.slicer_manager = mSlicerManagers[index];
353 midp.reference_image_index = ref;
354 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
357 QMessageBox::warning(this, "Error computing midposition image",midp.error_message.c_str());
359 QFileInfo info(midp.slicer_manager->GetFileName().c_str());
360 AddImage(midp.output,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_midposition.mhd");
362 QApplication::restoreOverrideCursor();
365 //------------------------------------------------------------------------------
368 //------------------------------------------------------------------------------
369 void vvMainWindow::AddContour(int image_index, vvMesh::Pointer contour, bool propagation)
371 QTreeWidgetItem *item = new QTreeWidgetItem();
372 item->setData(0,Qt::UserRole,"filename.vtk");
373 item->setData(1,Qt::UserRole,tr("contour"));
375 brush.setColor(QColor(contour->r*255,contour->g*255,contour->b*255));
376 brush.setStyle(Qt::SolidPattern);
377 item->setData(COLUMN_IMAGE_NAME,Qt::BackgroundRole,brush);
378 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
380 for (int j = 1; j <= 4; j++)
381 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(image_index)->data(j,Qt::CheckStateRole));
383 QTreePushButton* cButton = new QTreePushButton;
384 cButton->setItem(item);
385 cButton->setColumn(COLUMN_CLOSE_IMAGE);
386 cButton->setToolTip(tr("close image"));
387 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
388 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
389 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
391 QTreePushButton* rButton = new QTreePushButton;
392 rButton->setItem(item);
393 rButton->setColumn(COLUMN_RELOAD_IMAGE);
394 rButton->setToolTip(tr("reload image"));
395 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
396 rButton->setEnabled(false);
398 //connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
399 //this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
401 DataTree->topLevelItem(image_index)->setExpanded(1);
402 DataTree->topLevelItem(image_index)->addChild(item);
403 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
404 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
405 QString id = DataTree->topLevelItem(image_index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
406 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
409 mSlicerManagers[image_index]->AddContour(contour,propagation);
410 mSlicerManagers[image_index]->Render();
412 //------------------------------------------------------------------------------
415 //------------------------------------------------------------------------------
416 void vvMainWindow::OpenVTKContour()
418 if (mSlicerManagers.size() > 0) {
419 QString Extensions = "Images ( *.vtk *.obj)";
420 Extensions += ";;All Files (*)";
421 QString file = QFileDialog::getOpenFileName(this,tr("Open vtkPolyData"),mInputPathName,Extensions);
424 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
425 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
427 reader.SetImage(mSlicerManagers[index]->GetImage());
428 reader.SetModeToVTK();
429 reader.SetFilename(file.toStdString());
431 AddContour(index,reader.GetOutput()[0],false);
432 QApplication::restoreOverrideCursor();
435 //------------------------------------------------------------------------------
438 //------------------------------------------------------------------------------
439 void vvMainWindow::OpenDCStructContour()
441 if (mSlicerManagers.size() > 0) {
442 QString Extensions = "Dicom Files ( *.dcm; RS*)";
443 Extensions += ";;All Files (*)";
444 QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
447 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
449 reader.SetFilename(file.toStdString());
450 vvStructSelector selector;
451 selector.SetStructures(reader.GetROINames());
452 if (!mSlicerManagers[index]->GetVF().IsNull())
453 selector.EnablePropagationCheckBox();
454 if (selector.exec()) {
455 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
456 reader.SetSelectedItems(selector.getSelectedItems());
457 reader.SetImage(mSlicerManagers[index]->GetImage());
458 if (selector.PropagationEnabled())
459 reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
461 std::vector<vvMesh::Pointer> contours=reader.GetOutput();
462 for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
463 i!=contours.end(); i++)
464 AddContour(index,*i,selector.PropagationEnabled());
465 QApplication::restoreOverrideCursor();
469 //------------------------------------------------------------------------------
472 //------------------------------------------------------------------------------
473 void vvMainWindow::ComputeDeformableRegistration()
475 if (mSlicerManagers.size() > 0) {
476 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
477 vvDeformationDialog dialog(index,mSlicerManagers);
479 std::string base_name=itksys::SystemTools::GetFilenameWithoutExtension(mSlicerManagers[dialog.GetInputFileIndex()]->GetFileName());
480 AddField(dialog.GetOutput(),dialog.getFieldFile(),dialog.GetInputFileIndex());
481 WarpImage(dialog.GetSelectedSlicer(),dialog.GetReferenceFrameIndex());
483 std::cout << "Error or user cancellation while computing deformation field..." << std::endl;
484 } else QMessageBox::information(this, "Need to open image","You must open an image first.");
486 //------------------------------------------------------------------------------
489 //------------------------------------------------------------------------------
490 void vvMainWindow::WarpImage()
492 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
493 if (!mSlicerManagers[index]->GetVF().IsNull()) {
495 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
496 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
498 WarpImage(mSlicerManagers[index],ref);
501 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field"));
503 //------------------------------------------------------------------------------
506 //------------------------------------------------------------------------------
507 void vvMainWindow::WarpImage(vvSlicerManager* selected_slicer,int reference_phase)
509 if (!selected_slicer->GetVF().IsNull()) {
510 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
511 QFileInfo info(selected_slicer->GetFileName().c_str());
512 vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
513 reference_phase,this);
514 if (warp.ComputeWarpedImage()) {
515 AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
516 AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
517 AddImage(warp.GetJacobianImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_jacobian.mhd");
518 QApplication::restoreOverrideCursor();
520 QApplication::restoreOverrideCursor();
521 QMessageBox::warning(this,tr("Different spacings"),tr("The vector field and image spacings must be the same in order to warp."));
524 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field."));
526 //------------------------------------------------------------------------------
529 //------------------------------------------------------------------------------
530 vvMainWindow::~vvMainWindow()
532 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
533 if (mSlicerManagers[i] != NULL)
534 delete mSlicerManagers[i];
537 //------------------------------------------------------------------------------
539 //------------------------------------------------------------------------------
540 QTabWidget * vvMainWindow::GetTab()
544 //------------------------------------------------------------------------------
547 //------------------------------------------------------------------------------
548 void vvMainWindow::MergeImages()
550 QString Extensions = EXTENSIONS;
551 Extensions += ";;All Files (*)";
552 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images"),mInputPathName,Extensions);
555 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
556 std::vector<std::string> vector;
558 unsigned int currentDim = 0;
559 std::vector<double> currentSpacing;
560 std::vector<int> currentSize;
561 std::vector<double> currentOrigin;
563 for (int i = 0; i < files.size(); i++) {
564 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
565 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
566 reader->SetFileName(files[i].toStdString().c_str());
567 reader->ReadImageInformation();
569 //NOViewWidget->hide();
570 //NEViewWidget->hide();
571 //SOViewWidget->hide();
572 //SEViewWidget->hide();
574 currentDim = reader->GetNumberOfDimensions();
576 for (unsigned int j = 0; j < currentDim; j++) {
579 currentSpacing.resize(currentDim);
580 currentSize.resize(currentDim);
581 currentOrigin.resize(currentDim);
583 currentOrigin[j] = reader->GetOrigin(j);
584 currentSpacing[j] = reader->GetSpacing(j);
585 currentSize[j] = reader->GetDimensions(j);
586 } else if (currentDim != reader->GetNumberOfDimensions()
587 || currentSpacing[j] != reader->GetSpacing(j)
588 || currentSize[j] != (int)reader->GetDimensions(j)
589 || currentOrigin[j] != reader->GetOrigin(j)) {
590 QString error = "Cannot read file (too different from others ";
591 error += files[i].toStdString().c_str();
592 QMessageBox::information(this,tr("Reading problem"),error);
598 vector.push_back(files[i].toStdString());
601 if (vector.size() > 0)
602 LoadImages(vector, MERGED);
604 //------------------------------------------------------------------------------
607 //------------------------------------------------------------------------------
608 void vvMainWindow::MergeImagesWithTime()
610 QString Extensions = EXTENSIONS;
611 Extensions += ";;All Files (*)";
612 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images With Time"),mInputPathName,Extensions);
615 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
616 std::vector<std::string> vector;
618 unsigned int currentDim = 0;
619 std::vector<double> currentSpacing;
620 std::vector<int> currentSize;
621 std::vector<double> currentOrigin;
623 for (int i = 0; i < files.size(); i++) {
624 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
625 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
627 reader->SetFileName(files[i].toStdString().c_str());
628 reader->ReadImageInformation();
630 currentDim = reader->GetNumberOfDimensions();
632 for (unsigned int j = 0; j < currentDim; j++) {
635 currentSpacing.resize(currentDim);
636 currentSize.resize(currentDim);
637 currentOrigin.resize(currentDim);
639 currentOrigin[j] = reader->GetOrigin(j);
640 currentSpacing[j] = reader->GetSpacing(j);
641 currentSize[j] = reader->GetDimensions(j);
642 } else if (currentDim != reader->GetNumberOfDimensions()
643 || currentSpacing[j] != reader->GetSpacing(j)
644 || currentSize[j] != (int)reader->GetDimensions(j)
645 || currentOrigin[j] != reader->GetOrigin(j)) {
646 QString error = "Cannot read file (too different from others ";
647 error += files[i].toStdString().c_str();
648 QMessageBox::information(this,tr("Reading problem"),error);
654 vector.push_back(files[i].toStdString());
656 QString error = "Cannot read file info for ";
657 error += files[i].toStdString().c_str();
659 error += "Maybe you're trying to open an image in an unsupported format?\n";
660 QMessageBox::information(this,tr("Reading problem"),error);
663 sort(vector.begin(),vector.end());
664 if (vector.size() > 1)
665 LoadImages(vector, MERGEDWITHTIME);
667 QMessageBox::warning(this,tr("Reading problem"),"You need to select at least two images to merge images with time.\nIf you only want to open one image, please use the \"Open Image\" function.");
669 //------------------------------------------------------------------------------
672 //------------------------------------------------------------------------------
673 void vvMainWindow::OpenDicom()
675 std::vector<std::string> files;
677 std::cout << "dicomSeriesSelector " << std::endl;
678 if (dicomSeriesSelector->exec() == QDialog::Accepted) {
679 files = *(dicomSeriesSelector->GetFilenames());
680 LoadImages(files,DICOM);
683 //------------------------------------------------------------------------------
685 //------------------------------------------------------------------------------
686 void vvMainWindow::OpenImages()
688 QString Extensions = EXTENSIONS;
689 Extensions += ";;All Files (*)";
691 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images"),mInputPathName,Extensions);
694 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
695 std::vector<std::string> vector;
696 for (int i = 0; i < files.size(); i++)
697 vector.push_back(files[i].toStdString());
698 LoadImages(vector, IMAGE);
700 //------------------------------------------------------------------------------
701 void vvMainWindow::OpenRecentImage()
703 QAction * caller = qobject_cast<QAction*>(sender());
704 std::vector<std::string> images;
705 images.push_back(caller->text().toStdString());
706 mInputPathName = itksys::SystemTools::GetFilenamePath(images[0]).c_str();
707 LoadImages(images,IMAGE);
709 //------------------------------------------------------------------------------
712 //------------------------------------------------------------------------------
713 void vvMainWindow::OpenImageWithTime()
715 QString Extensions = EXTENSIONS;
716 Extensions += ";;All Files (*)";
718 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images With Time"),mInputPathName,Extensions);
721 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
722 std::vector<std::string> vector;
723 for (int i = 0; i < files.size(); i++) {
724 vector.push_back(files[i].toStdString());
726 LoadImages(vector, IMAGEWITHTIME);
728 //------------------------------------------------------------------------------
731 //------------------------------------------------------------------------------
732 void vvMainWindow::LoadImages(std::vector<std::string> files, LoadedImageType filetype)
734 //Separate the way to open images and dicoms
736 if (filetype == IMAGE || filetype == IMAGEWITHTIME)
737 fileSize = files.size();
741 //Only add to the list of recently opened files when a single file is opened,
742 //to avoid polluting the list of recently opened files
743 if (files.size() == 1) {
744 QFileInfo finfo=tr(files[0].c_str());
745 AddToRecentlyOpenedImages(finfo.absoluteFilePath().toStdString());
747 //init the progress events
748 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
749 vvProgressDialog progress("Opening " + files[0],fileSize>1);
750 qApp->processEvents();
752 int numberofsuccesulreads=0;
753 //open images as 1 or multiples
754 for (int i = 0; i < fileSize; i++) {
756 progress.Update("Opening " + files[i]);
757 progress.SetProgress(i,fileSize);
758 qApp->processEvents();
760 //read the image and put it in mSlicerManagers
761 vvSlicerManager* imageManager = new vvSlicerManager(4);
762 qApp->processEvents();
764 bool SetImageSucceed=false;
766 // Change filename if an image with the same already exist
769 for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
770 vvSlicerManager * v = mSlicerManagers[l];
771 // DD(v->GetBaseFileName());
772 // DD(v->GetFileName());
773 if (v->GetBaseFileName() ==
774 vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(files[i]))) {
775 number = std::max(number, v->GetBaseFileNameNumber()+1);
780 if (filetype == IMAGE || filetype == IMAGEWITHTIME)
781 SetImageSucceed = imageManager->SetImage(files[i],filetype, number);
783 SetImageSucceed = imageManager->SetImages(files,filetype, number);
785 if (SetImageSucceed == false) {
786 QApplication::restoreOverrideCursor();
787 QString error = "Cannot open file \n";
788 error += imageManager->GetLastError().c_str();
789 QMessageBox::information(this,tr("Reading problem"),error);
792 mSlicerManagers.push_back(imageManager);
794 //create an item in the tree with good settings
795 QTreeWidgetItem *item = new QTreeWidgetItem();
796 item->setData(0,Qt::UserRole,files[i].c_str());
797 QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
798 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
799 qApp->processEvents();
801 //Create the buttons for reload and close
802 qApp->processEvents();
803 QTreePushButton* cButton = new QTreePushButton;
804 cButton->setItem(item);
805 cButton->setColumn(COLUMN_CLOSE_IMAGE);
806 cButton->setToolTip(tr("close image"));
807 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
808 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
809 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
811 QTreePushButton* rButton = new QTreePushButton;
812 rButton->setItem(item);
813 rButton->setColumn(COLUMN_RELOAD_IMAGE);
814 rButton->setToolTip(tr("reload image"));
815 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
816 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
817 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
819 DataTree->addTopLevelItem(item);
820 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
821 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
823 //set the id of the image
824 QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
825 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
826 mSlicerManagers.back()->SetId(id.toStdString());
828 linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
830 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
831 this,SLOT(CurrentImageChanged(std::string)));
832 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
833 this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
834 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
835 this, SLOT(VectorChanged(int,double,double,double, double)));
836 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
837 this, SLOT(OverlayChanged(int,double,double)));
838 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
839 this, SLOT(FusionChanged(int,double)));
840 connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
841 this,SLOT(WindowsChanged(int, int, int)));
842 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
843 this,SLOT(WindowLevelChanged(double, double, int, int)));
844 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
845 this,SLOT(UpdateSlice(int,int)));
846 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
847 this,SLOT(UpdateTSlice(int, int)));
848 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
849 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
850 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
851 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
852 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)),
853 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*)));
854 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
855 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
856 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
858 numberofsuccesulreads++;
861 if (numberofsuccesulreads) {
862 NOViewWidget->show();
863 NEViewWidget->show();
864 SOViewWidget->show();
865 SEViewWidget->show();
870 // Try to guess default WindowLevel
872 mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
875 if ((range[0] == 0) && (range[1] == 1)) {
876 presetComboBox->setCurrentIndex(5);// binary
881 QApplication::restoreOverrideCursor();
883 //------------------------------------------------------------------------------
885 //------------------------------------------------------------------------------
886 void vvMainWindow::UpdateTree()
888 DataTree->resizeColumnToContents(COLUMN_TREE);
889 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
890 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
891 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
892 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
893 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
894 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
895 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
897 //------------------------------------------------------------------------------
899 //------------------------------------------------------------------------------
900 void vvMainWindow::CurrentImageChanged(std::string id)
902 // DD("CurrentImageChanged");
904 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
905 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
908 DataTree->topLevelItem(i)->setSelected(0);
910 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
911 DataTree->topLevelItem(i)->child(child)->setSelected(0);
914 DataTree->topLevelItem(selected)->setSelected(1);
915 // DD(mSlicerManagers[selected]->GetFileName());
916 emit SelectedImageHasChanged(mSlicerManagers[selected]);
918 //------------------------------------------------------------------------------
920 //------------------------------------------------------------------------------
921 void vvMainWindow::ImageInfoChanged()
923 contextActions[7]->setEnabled(1);
924 contextActions[6]->setEnabled(1);
925 actionSave_As->setEnabled(1);
926 actionAdd_VF_to_current_Image->setEnabled(1);
927 actionAdd_fusion_image->setEnabled(1);
928 actionNorth_East_Window->setEnabled(1);
929 actionNorth_West_Window->setEnabled(1);
930 actionSouth_East_Window->setEnabled(1);
931 actionSouth_West_Window->setEnabled(1);
932 inverseButton->setEnabled(1);
934 goToCursorPushButton->setEnabled(1);
936 if (DataTree->selectedItems().size()) {
937 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
939 colorMapComboBox->setEnabled(1);
940 for (int i = 0; i < DataTree->topLevelItem(index)->childCount(); i++) {
941 if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
942 DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion") {
943 colorMapComboBox->setEnabled(0);
948 std::vector<double> origin;
949 std::vector<double> inputSpacing;
950 std::vector<int> inputSize;
951 std::vector<double> sizeMM;
954 QString inputSizeInBytes;
955 QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
957 if (mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size() > 1 || playMode == 1) {
958 playButton->setEnabled(1);
959 frameRateLabel->setEnabled(1);
960 frameRateSpinBox->setEnabled(1);
962 playButton->setEnabled(0);
963 frameRateLabel->setEnabled(0);
964 frameRateSpinBox->setEnabled(0);
970 if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
971 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
972 dimension = imageSelected->GetNumberOfDimensions();
973 origin.resize(dimension);
974 inputSpacing.resize(dimension);
975 inputSize.resize(dimension);
976 sizeMM.resize(dimension);
977 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
978 for (int i = 0; i < dimension; i++) {
979 origin[i] = imageSelected->GetOrigin()[i];
980 inputSpacing[i] = imageSelected->GetSpacing()[i];
981 inputSize[i] = imageSelected->GetSize()[i];
982 sizeMM[i] = inputSize[i]*inputSpacing[i];
983 NPixel *= inputSize[i];
985 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
986 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
987 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
988 dimension = imageSelected->GetNumberOfDimensions();
989 origin.resize(dimension);
990 inputSpacing.resize(dimension);
991 inputSize.resize(dimension);
992 sizeMM.resize(dimension);
993 pixelType = mSlicerManagers[index]->GetVF()->GetScalarTypeAsString().c_str();
994 for (int i = 0; i < dimension; i++) {
995 origin[i] = imageSelected->GetOrigin()[i];
996 inputSpacing[i] = imageSelected->GetSpacing()[i];
997 inputSize[i] = imageSelected->GetSize()[i];
998 sizeMM[i] = inputSize[i]*inputSpacing[i];
999 NPixel *= inputSize[i];
1001 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1002 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
1003 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
1004 dimension = imageSelected->GetNumberOfDimensions();
1005 origin.resize(dimension);
1006 inputSpacing.resize(dimension);
1007 inputSize.resize(dimension);
1008 sizeMM.resize(dimension);
1009 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
1010 for (int i = 0; i < dimension; i++) {
1011 origin[i] = imageSelected->GetOrigin()[i];
1012 inputSpacing[i] = imageSelected->GetSpacing()[i];
1013 inputSize[i] = imageSelected->GetSize()[i];
1014 sizeMM[i] = inputSize[i]*inputSpacing[i];
1015 NPixel *= inputSize[i];
1017 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1018 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
1019 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
1020 dimension = imageSelected->GetNumberOfDimensions();
1021 origin.resize(dimension);
1022 inputSpacing.resize(dimension);
1023 inputSize.resize(dimension);
1024 sizeMM.resize(dimension);
1025 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
1026 for (int i = 0; i < dimension; i++) {
1027 origin[i] = imageSelected->GetOrigin()[i];
1028 inputSpacing[i] = imageSelected->GetSpacing()[i];
1029 inputSize[i] = imageSelected->GetSize()[i];
1030 sizeMM[i] = inputSize[i]*inputSpacing[i];
1031 NPixel *= inputSize[i];
1033 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1036 QString dim = QString::number(dimension) + " (";
1037 dim += pixelType + ")";
1039 infoPanel->setFileName(image);
1040 infoPanel->setDimension(dim);
1041 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1042 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1043 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1044 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1045 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1047 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1048 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1049 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1050 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1052 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1053 for (int i = 0; i < 4; i++) {
1054 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1055 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1059 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1060 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1061 // DD(mSlicerManagers[index]->GetColorMap());
1062 // DD(mSlicerManagers[index]->GetPreset());
1063 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1064 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1066 infoPanel->setFileName(image);
1067 infoPanel->setDimension(dim);
1068 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1069 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1070 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1071 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1072 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1074 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1075 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1076 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1077 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1079 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1080 for (int i = 0; i < 4; i++) {
1081 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1082 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1086 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1087 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1088 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1089 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1091 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
1092 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1093 overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
1094 mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
1095 mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
1097 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1098 overlayPanel->getVFProperty(-1,-1,-1);
1100 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
1101 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1102 overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor());
1104 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1105 overlayPanel->getOverlayProperty(-1);
1107 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
1108 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1109 overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
1110 mSlicerManagers[index]->GetFusionColorMap(),
1111 mSlicerManagers[index]->GetFusionWindow(),
1112 mSlicerManagers[index]->GetFusionLevel());
1114 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1115 overlayPanel->getFusionProperty(-1, -1,-1,-1);
1119 //------------------------------------------------------------------------------
1121 //------------------------------------------------------------------------------
1122 void vvMainWindow::ShowDocumentation()
1124 documentation->show();
1126 //------------------------------------------------------------------------------
1127 void vvMainWindow::ShowHelpDialog()
1129 help_dialog->show();
1131 //------------------------------------------------------------------------------
1133 //------------------------------------------------------------------------------
1134 void vvMainWindow::ChangeViewMode()
1136 QListIterator<int> it0(splitter_3->sizes());
1137 QListIterator<int> it1(splitter_3->sizes());
1140 while (it0.hasNext()) {
1143 while (it1.hasNext()) {
1148 if (viewMode == 1) {
1150 size0.push_back(max0);
1152 size1.push_back(max1);
1154 splitter_3->setSizes(size0);
1155 OSplitter->setSizes(size1);
1156 DataTree->setColumnHidden(2,1);
1157 DataTree->setColumnHidden(3,1);
1158 DataTree->setColumnHidden(4,1);
1161 size0.push_back(int(max0/2));
1162 size0.push_back(int(max0/2));
1163 size1.push_back(int(max1/2));
1164 size1.push_back(int(max1/2));
1165 splitter_3->setSizes(size0);
1166 OSplitter->setSizes(size1);
1167 DataTree->setColumnHidden(2,0);
1168 DataTree->setColumnHidden(3,0);
1169 DataTree->setColumnHidden(4,0);
1172 //------------------------------------------------------------------------------
1174 //------------------------------------------------------------------------------
1175 QString vvMainWindow::GetSizeInBytes(unsigned long size)
1177 QString result = "";// QString::number(size);
1178 //result += " bytes (";
1179 if (size > 1000000000) {
1181 result += QString::number(size);
1182 result += "Gb";//)";
1183 } else if (size > 1000000) {
1185 result += QString::number(size);
1186 result += "Mb";//)";
1187 } else if (size > 1000) {
1189 result += QString::number(size);
1190 result += "kb";//)";
1194 //------------------------------------------------------------------------------
1196 //------------------------------------------------------------------------------
1197 QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble)
1200 for (unsigned int i= 0; i < vectorDouble.size(); i++) {
1203 result += QString::number(vectorDouble[i]);
1207 //------------------------------------------------------------------------------
1209 //------------------------------------------------------------------------------
1210 QString vvMainWindow::GetVectorIntAsString(std::vector<int> vectorInt)
1213 for (unsigned int i= 0; i < vectorInt.size(); i++) {
1216 result += QString::number(vectorInt[i]);
1220 //------------------------------------------------------------------------------
1222 //------------------------------------------------------------------------------
1223 int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item)
1225 QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1226 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1227 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1232 //------------------------------------------------------------------------------
1234 //------------------------------------------------------------------------------
1235 QTreeWidgetItem* vvMainWindow::GetItemFromSlicerManager(vvSlicerManager* sm)
1237 QString id = sm->GetId().c_str();
1238 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1239 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1240 return DataTree->topLevelItem(i);
1244 //------------------------------------------------------------------------------
1246 //------------------------------------------------------------------------------
1247 void vvMainWindow::DisplayChanged(QTreeWidgetItem *clicked_item, int column)
1249 int index = GetSlicerIndexFromItem(clicked_item);
1250 if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
1252 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1253 //Trick to avoid redoing twice the job for a key (sr)
1254 mSlicerManagers[i]->GetSlicer(column-1)->GetRenderWindow()-> GetInteractor()->SetKeySym("Crap");
1256 QTreeWidgetItem* current_row=DataTree->topLevelItem(i);
1257 if (DataTree->topLevelItem(index) == current_row) {
1258 vvSlicer* clicked_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1259 if (current_row == clicked_item) {
1260 //If we just activated a slicer
1261 if (current_row->data(column,Qt::CheckStateRole).toInt() > 0) {
1262 mSlicerManagers[i]->UpdateSlicer(column-1,clicked_item->data(column,Qt::CheckStateRole).toInt());
1263 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1264 DisplaySliders(i,column-1);
1265 std::map<std::string,int> overlay_counts;
1266 for (int child = 0; child < current_row->childCount(); child++) {
1267 std::string overlay_type =
1268 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1269 overlay_counts[overlay_type]++;
1270 current_row->child(child)->setData(column,Qt::CheckStateRole,
1271 current_row->data(column,Qt::CheckStateRole));
1272 clicked_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,true);
1274 } else { //We don't allow simply desactivating a slicer
1275 clicked_item->setData(column,Qt::CheckStateRole,2);
1279 //if we clicked on the vector(or overlay) and not the image
1281 if (clicked_item->data(column,Qt::CheckStateRole).toInt()) {
1282 current_row->setData(column,Qt::CheckStateRole,2);
1283 mSlicerManagers[i]->UpdateSlicer(column-1,2);
1284 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1285 DisplaySliders(i,column-1);
1287 int vis = clicked_item->data(column,Qt::CheckStateRole).toInt();
1288 std::string overlay_type = clicked_item->data(1,Qt::UserRole).toString().toStdString();
1289 int overlay_index=0;
1290 for (int child = 0; child < current_row->childCount(); child++) {
1291 if (current_row->child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1293 if (current_row->child(child) == clicked_item) break;
1295 clicked_slicer->SetActorVisibility(
1296 clicked_item->data(1,Qt::UserRole).toString().toStdString(), overlay_index-1,vis);
1298 } else if (current_row->data(column,Qt::CheckStateRole).toInt() > 0) {
1299 current_row->setData(column,Qt::CheckStateRole,0);
1300 mSlicerManagers[i]->UpdateSlicer(column-1,0);
1301 std::map<std::string,int> overlay_counts;
1302 for (int child = 0; child < current_row->childCount(); child++) {
1303 std::string overlay_type =
1304 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1305 overlay_counts[overlay_type]++;
1306 current_row->child(child)->setData(column,Qt::CheckStateRole,0);
1307 vvSlicer * current_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1308 current_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,false);
1311 //mSlicerManagers[i]->SetColorMap(-1);
1312 mSlicerManagers[i]->SetColorMap();
1314 mSlicerManagers[index]->GetSlicer(column-1)->Render();
1316 //------------------------------------------------------------------------------
1318 void vvMainWindow::InitSlicers()
1320 if (mSlicerManagers.size()) {
1321 mSlicerManagers.back()->GenerateDefaultLookupTable();
1323 mSlicerManagers.back()->SetSlicerWindow(0,NOViewWidget->GetRenderWindow());
1324 mSlicerManagers.back()->SetSlicerWindow(1,NEViewWidget->GetRenderWindow());
1325 mSlicerManagers.back()->SetSlicerWindow(2,SOViewWidget->GetRenderWindow());
1326 mSlicerManagers.back()->SetSlicerWindow(3,SEViewWidget->GetRenderWindow());
1330 //------------------------------------------------------------------------------
1331 void vvMainWindow::InitDisplay()
1333 if (mSlicerManagers.size()) {
1334 //BE CAREFUL : this is absolutely necessary to set the interactor style
1335 //in order to have the same style instanciation for all SlicerManagers in
1337 for (int j = 0; j < 4; j++) {
1338 vvInteractorStyleNavigator* style = vvInteractorStyleNavigator::New();
1339 style->SetAutoAdjustCameraClippingRange(1);
1340 bool AlreadySelected = false;
1341 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1342 mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
1344 //select the image only if previous are not selected
1345 if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1) {
1346 mSlicerManagers[i]->UpdateSlicer(j,1);
1347 AlreadySelected = true;
1348 } else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected) {
1349 if (DataTree->selectedItems().size() == 0)
1350 DataTree->topLevelItem(i)->setSelected(1);
1351 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
1352 mSlicerManagers[i]->UpdateSlicer(j,1);
1353 DisplaySliders(i,j);
1355 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,0);
1356 mSlicerManagers[i]->UpdateSlicer(j,0);
1363 //------------------------------------------------------------------------------
1365 //------------------------------------------------------------------------------
1366 void vvMainWindow::DisplaySliders(int slicer, int window)
1369 mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
1370 int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
1374 tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
1375 int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetTSlice();
1376 bool showHorizontal = false;
1377 bool showVertical = false;
1378 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1379 || (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 2
1380 && mSlicerManagers[slicer]->GetType() != IMAGEWITHTIME
1381 && mSlicerManagers[slicer]->GetType() != MERGEDWITHTIME))
1382 showVertical = true;
1383 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1384 || mSlicerManagers[slicer]->GetType() == IMAGEWITHTIME
1385 || mSlicerManagers[slicer]->GetType() == MERGEDWITHTIME)
1386 showHorizontal = true;
1389 verticalSliders[window]->show();
1391 verticalSliders[window]->hide();
1392 verticalSliders[window]->setRange(range[0],range[1]);
1393 verticalSliders[window]->setValue(position);
1396 horizontalSliders[window]->show();
1398 horizontalSliders[window]->hide();
1399 horizontalSliders[window]->setRange(tRange[0],tRange[1]);
1400 horizontalSliders[window]->setValue(tPosition);
1402 //------------------------------------------------------------------------------
1404 //------------------------------------------------------------------------------
1405 void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column)
1407 int index = GetSlicerIndexFromItem(item);
1409 if (DataTree->topLevelItem(index) != item) {
1410 QString warning = "Do you really want to close the overlay : ";
1411 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1412 QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
1414 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1415 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1416 if (msgBox.exec() == QMessageBox::AcceptRole) {
1417 std::string overlay_type=item->data(1,Qt::UserRole).toString().toStdString();
1418 int overlay_index=0;
1419 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++) {
1420 if (DataTree->topLevelItem(index)->\
1421 child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1423 if (DataTree->topLevelItem(index)->child(child) == item) break;
1425 mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
1426 mSlicerManagers[index]->SetColorMap(0);
1427 DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
1428 mSlicerManagers[index]->Render();
1430 } else if (DataTree->topLevelItemCount() <= 1) {
1431 QString warning = "Do you really want to close the image : ";
1432 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1433 warning += "\nThis is the last image, you're about to close vv !!!";
1434 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1436 msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
1437 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1438 if (msgBox.exec() == QMessageBox::AcceptRole) {
1442 QString warning = "Do you really want to close the image : ";
1443 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1444 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1446 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1447 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1448 if (msgBox.exec() == QMessageBox::AcceptRole) {
1450 // Tell tools that we close an image
1451 emit AnImageIsBeingClosed(mSlicerManagers[index]);
1453 std::vector<vvSlicerManager*>::iterator Manageriter = mSlicerManagers.begin();
1454 DataTree->takeTopLevelItem(index);
1455 for (int i = 0; i < index; i++) {
1458 linkPanel->removeImage(index);
1459 mSlicerManagers[index]->RemoveActors();
1460 delete mSlicerManagers[index];
1461 mSlicerManagers.erase(Manageriter);
1468 //------------------------------------------------------------------------------
1470 //------------------------------------------------------------------------------
1471 void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column)
1473 // int index = GetSlicerIndexFromItem(item);
1474 // QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1475 // if (item->data(1,Qt::UserRole).toString() == "vector")
1476 // mSlicerManagers[index]->ReloadVF();
1478 // mSlicerManagers[index]->Reload();
1480 // QApplication::restoreOverrideCursor();
1481 int index = GetSlicerIndexFromItem(item);
1482 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1483 QString role=item->data(1,Qt::UserRole).toString();
1484 if ( role == "vector")
1485 mSlicerManagers[index]->ReloadVF();
1486 else if (role == "overlay")
1487 mSlicerManagers[index]->ReloadOverlay();
1488 else if (role == "fusion")
1489 mSlicerManagers[index]->ReloadFusion();
1491 mSlicerManagers[index]->Reload();
1493 // Update view and info
1495 mSlicerManagers[index]->Render();
1496 QApplication::restoreOverrideCursor();
1498 //------------------------------------------------------------------------------
1500 // void vvMainWindow::CropImage()
1502 // int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1503 // vvCropDialog crop(mSlicerManagers,index);
1505 // AddImage(crop.GetOutput(),"cropped.mhd");
1508 //------------------------------------------------------------------------------
1509 void vvMainWindow::SplitImage()
1511 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1512 int dim = mSlicerManagers[index]->GetDimension();
1513 QString warning = "Do you really want to split the ";
1514 warning += QString::number(dim) + "D image ";
1515 warning += DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString() + " into ";
1516 warning += QString::number(mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetSize()[dim-1]) + " ";
1517 warning += QString::number(dim-1) + "D images.";
1518 QMessageBox msgBox(QMessageBox::Warning, tr("Split Image"),
1520 msgBox.addButton(tr("Split"), QMessageBox::AcceptRole);
1521 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1522 if (msgBox.exec() == QMessageBox::AcceptRole) {
1523 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1525 std::string filename = DataTree->selectedItems()[0]->data(0,Qt::UserRole).toString().toStdString();
1526 int numberOfSlice = mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetSize()[dim-1];
1527 std::string path = itksys::SystemTools::GetFilenamePath(
1530 path += DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString().toStdString();
1532 path += itksys::SystemTools::GetFilenameLastExtension(
1535 typedef itk::NumericSeriesFileNames NameGeneratorType;
1536 NameGeneratorType::Pointer nameGenerator = NameGeneratorType::New();
1537 nameGenerator->SetSeriesFormat(path.c_str());
1538 nameGenerator->SetStartIndex(0);
1539 nameGenerator->SetEndIndex(numberOfSlice-1);
1540 nameGenerator->SetIncrementIndex(1);
1542 for (int i = 0; i < numberOfSlice; i++) {
1543 vvSlicerManager* imageManager = new vvSlicerManager(4);
1544 imageManager->SetExtractedImage(nameGenerator->GetFileNames()[i],
1545 mSlicerManagers[index]->GetSlicer(0)->GetImage(), i);
1546 mSlicerManagers.push_back(imageManager);
1548 //create an item in the tree with good settings
1549 QTreeWidgetItem *item = new QTreeWidgetItem();
1550 item->setData(0,Qt::UserRole,nameGenerator->GetFileNames()[i].c_str());
1551 std::string fileI = itksys::SystemTools::GetFilenameWithoutLastExtension(
1552 nameGenerator->GetFileNames()[i]).c_str();
1553 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileI.c_str());
1554 for (int j = 1; j <= 4; j++) {
1555 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1556 DataTree->topLevelItem(i)->setData(j,Qt::CheckStateRole,0);
1558 item->setData(j,Qt::CheckStateRole,2);
1561 //Create the buttons for reload and close
1562 QTreePushButton* cButton = new QTreePushButton;
1563 cButton->setItem(item);
1564 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1565 cButton->setToolTip(tr("close image"));
1566 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1567 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1568 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1570 QTreePushButton* rButton = new QTreePushButton;
1571 rButton->setItem(item);
1572 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1573 rButton->setToolTip(tr("reload image"));
1574 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1575 rButton->setEnabled(false);
1576 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1577 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1579 DataTree->addTopLevelItem(item);
1580 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1581 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1583 //set the id of the image
1584 QString id = nameGenerator->GetFileNames()[i].c_str() + QString::number(mSlicerManagers.size()-1);
1585 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1586 mSlicerManagers.back()->SetId(id.toStdString());
1587 linkPanel->addImage(fileI, id.toStdString());
1588 connect(mSlicerManagers.back(),SIGNAL(currentImageChanged(std::string)),
1589 this,SLOT(CurrentImageChanged(std::string)));
1590 connect(mSlicerManagers.back(),SIGNAL(
1591 UpdatePosition(int, double, double, double, double, double, double, double)),this,
1592 SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
1593 connect(mSlicerManagers.back(),SIGNAL(UpdateVector(int, double, double, double, double)),
1594 this, SLOT(VectorChanged(int,double,double,double, double)));
1595 connect(mSlicerManagers.back(),SIGNAL(UpdateOverlay(int, double, double)),
1596 this, SLOT(OverlayChanged(int,double,double)));
1597 connect(mSlicerManagers.back(),SIGNAL(UpdateFusion(int, double)),
1598 this, SLOT(FusionChanged(int,double)));
1599 connect(mSlicerManagers.back(),SIGNAL(UpdateWindows(int, int, int)),
1600 this,SLOT(WindowsChanged(int, int, int)));
1601 connect(mSlicerManagers.back(),SIGNAL(WindowLevelChanged(double, double,int, int)),
1602 this,SLOT(WindowLevelChanged(double, double, int, int)));
1603 connect(mSlicerManagers.back(),SIGNAL(UpdateSlice(int,int)),
1604 this,SLOT(UpdateSlice(int,int)));
1605 connect(mSlicerManagers.back(),SIGNAL(UpdateTSlice(int, int)),
1606 this,SLOT(UpdateTSlice(int, int)));
1607 connect(mSlicerManagers.back(),SIGNAL(UpdateSliceRange(int,int,int,int,int)),
1608 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
1609 connect(mSlicerManagers.back(),SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
1610 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
1611 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)),
1612 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*)));
1613 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
1615 qApp->processEvents();
1618 qApp->processEvents();
1620 QApplication::restoreOverrideCursor();
1622 QApplication::restoreOverrideCursor();
1623 QString error = "Cannot split file (dimensions must be greater than 2) ";
1624 QMessageBox::information(this,tr("Splitting problem"),error);
1628 //------------------------------------------------------------------------------
1630 //------------------------------------------------------------------------------
1631 void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value)
1633 infoPanel->setCurrentInfo(visibility,x,y,z,X,Y,Z,value);
1635 //------------------------------------------------------------------------------
1637 //------------------------------------------------------------------------------
1638 void vvMainWindow::VectorChanged(int visibility,double x, double y, double z, double value)
1640 overlayPanel->getCurrentVectorInfo(visibility,x,y,z,value);
1642 //------------------------------------------------------------------------------
1644 //------------------------------------------------------------------------------
1645 void vvMainWindow::OverlayChanged(int visibility, double valueOver, double valueRef)
1647 overlayPanel->getCurrentOverlayInfo(visibility,valueOver, valueRef);
1649 //------------------------------------------------------------------------------
1651 //------------------------------------------------------------------------------
1652 void vvMainWindow::FusionChanged(int visibility, double value)
1654 overlayPanel->getCurrentFusionInfo(visibility,value);
1656 //------------------------------------------------------------------------------
1658 //------------------------------------------------------------------------------
1659 void vvMainWindow::WindowsChanged(int window, int view, int slice)
1661 infoPanel->setViews(window, view, slice);
1663 //------------------------------------------------------------------------------
1665 //------------------------------------------------------------------------------
1666 void vvMainWindow::WindowLevelChanged(double window, double level,int preset,int colormap)
1668 windowSpinBox->setValue(window);
1669 levelSpinBox->setValue(level);
1670 colorMapComboBox->setCurrentIndex(colormap);
1671 presetComboBox->setCurrentIndex(preset);
1673 //------------------------------------------------------------------------------
1675 //------------------------------------------------------------------------------
1676 void vvMainWindow::WindowLevelEdited()
1678 presetComboBox->setCurrentIndex(6);
1679 UpdateWindowLevel();
1681 //------------------------------------------------------------------------------
1683 //------------------------------------------------------------------------------
1684 void vvMainWindow::UpdateWindowLevel()
1686 if (DataTree->selectedItems().size()) {
1687 if (presetComboBox->currentIndex() == 7) //For ventilation
1688 colorMapComboBox->setCurrentIndex(5);
1689 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1690 mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
1691 mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
1692 mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
1693 mSlicerManagers[index]->Render();
1696 //------------------------------------------------------------------------------
1698 //------------------------------------------------------------------------------
1699 void vvMainWindow::UpdateColorMap()
1701 if (DataTree->selectedItems().size()) {
1702 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1703 mSlicerManagers[index]->SetColorMap(colorMapComboBox->currentIndex());
1704 mSlicerManagers[index]->Render();
1707 //------------------------------------------------------------------------------
1708 void vvMainWindow::SwitchWindowLevel()
1710 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1711 int window = mSlicerManagers[index]->GetColorWindow();
1712 presetComboBox->setCurrentIndex(6);
1713 windowSpinBox->setValue(-window);
1714 UpdateWindowLevel();
1716 //------------------------------------------------------------------------------
1718 //------------------------------------------------------------------------------
1719 void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
1721 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1722 if (mSlicerManagers[i]->GetId() == id) {
1723 //mSlicerManagers[i]->SetTSlice(temps);
1724 mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
1725 mSlicerManagers[i]->UpdateViews(0,slicer);
1730 //------------------------------------------------------------------------------
1732 //------------------------------------------------------------------------------
1733 void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm)
1735 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1736 if (id == mSlicerManagers[i]->GetId()) {
1737 mSlicerManagers[i]->UpdateLinkedNavigation(sm->GetSlicer(0));
1741 //------------------------------------------------------------------------------
1743 //------------------------------------------------------------------------------
1744 void vvMainWindow::ShowContextMenu(QPoint point)
1746 if (!DataTree->selectedItems().size()) {
1747 contextActions[1]->setEnabled(0);
1748 contextActions[2]->setEnabled(0);
1749 contextActions[3]->setEnabled(0);
1750 contextActions[4]->setEnabled(0);
1751 contextActions[5]->setEnabled(0);
1752 contextActions[6]->setEnabled(0);
1753 contextActions[7]->setEnabled(0);
1755 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1756 contextActions[1]->setEnabled(1);
1757 contextActions[2]->setEnabled(
1758 DataTree->itemWidget(DataTree->selectedItems()[0],
1759 COLUMN_RELOAD_IMAGE)->isEnabled());
1760 contextActions[3]->setEnabled(1);
1761 contextActions[5]->setEnabled(1);
1762 contextActions[6]->setEnabled(1);
1763 contextActions[7]->setEnabled(1);
1765 if (mSlicerManagers[index]->GetDimension() < 3)
1766 contextActions[4]->setEnabled(0);
1768 contextActions[4]->setEnabled(1);
1770 contextMenu.exec(QCursor::pos());
1772 //------------------------------------------------------------------------------
1774 //------------------------------------------------------------------------------
1775 void vvMainWindow::CloseImage()
1777 CloseImage(DataTree->selectedItems()[0],0);
1779 //------------------------------------------------------------------------------
1781 //------------------------------------------------------------------------------
1782 void vvMainWindow::ReloadImage()
1784 ReloadImage(DataTree->selectedItems()[0],0);
1786 //------------------------------------------------------------------------------
1788 //------------------------------------------------------------------------------
1789 void vvMainWindow::SelectOverlayImage()
1791 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1793 //check if one overlay image is added
1794 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1795 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay") {
1796 QString error = "Cannot add more than one compared image\n";
1797 error += "Please remove first ";
1798 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1799 QMessageBox::information(this,tr("Problem adding compared image !"),error);
1803 QString Extensions = EXTENSIONS;
1804 Extensions += ";;All Files (*)";
1805 QString file = QFileDialog::getOpenFileName(this,tr("Load Overlay image"),mInputPathName,Extensions);
1806 if (!file.isEmpty())
1807 AddOverlayImage(index,file);
1809 //------------------------------------------------------------------------------
1811 //------------------------------------------------------------------------------
1812 void vvMainWindow::AddOverlayImage(int index, QString file)
1815 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1816 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1817 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1818 reader->SetFileName(file.toStdString().c_str());
1819 reader->ReadImageInformation();
1820 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1821 int dimension = reader->GetNumberOfDimensions();
1822 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1823 vvProgressDialog progress("Opening " + file.toStdString());
1824 qApp->processEvents();
1826 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1827 if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component)) {
1828 //create an item in the tree with good settings
1829 QTreeWidgetItem *item = new QTreeWidgetItem();
1830 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1831 item->setData(1,Qt::UserRole,tr("overlay"));
1832 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
1833 qApp->processEvents();
1835 for (int j = 1; j <= 4; j++) {
1836 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1837 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("overlay",0,
1838 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1841 //Create the buttons for reload and close
1842 qApp->processEvents();
1843 QTreePushButton* cButton = new QTreePushButton;
1844 cButton->setItem(item);
1845 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1846 cButton->setToolTip(tr("close image"));
1847 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1848 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1849 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1851 QTreePushButton* rButton = new QTreePushButton;
1852 rButton->setItem(item);
1853 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1854 rButton->setToolTip(tr("reload image"));
1855 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1856 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1857 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1859 DataTree->topLevelItem(index)->setExpanded(1);
1860 DataTree->topLevelItem(index)->addChild(item);
1861 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1862 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1864 //set the id of the image
1865 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1866 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1868 qApp->processEvents();
1870 QApplication::restoreOverrideCursor();
1872 QApplication::restoreOverrideCursor();
1873 QString error = "Cannot import the new image.\n";
1874 error += mSlicerManagers[index]->GetLastError().c_str();
1875 QMessageBox::information(this,tr("Problem reading image !"),error);
1879 void vvMainWindow::AddFusionImage()
1881 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1883 //check if one fusion image is added
1884 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1885 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") {
1886 QString error = "Cannot add more than one fusion image\n";
1887 error += "Please remove first ";
1888 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1889 QMessageBox::information(this,tr("Problem adding fusion image !"),error);
1893 QString Extensions = EXTENSIONS;
1894 Extensions += ";;All Files (*)";
1895 QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
1896 if (!file.isEmpty()) {
1897 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1898 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1899 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1900 reader->SetFileName(file.toStdString().c_str());
1901 reader->ReadImageInformation();
1902 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1904 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1905 vvProgressDialog progress("Opening fusion");
1906 qApp->processEvents();
1908 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1909 if (mSlicerManagers[index]->SetFusion(file.toStdString(),
1910 reader->GetNumberOfDimensions(), component)) {
1911 //create an item in the tree with good settings
1912 QTreeWidgetItem *item = new QTreeWidgetItem();
1913 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1914 item->setData(1,Qt::UserRole,tr("fusion"));
1915 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
1916 qApp->processEvents();
1918 for (int j = 1; j <= 4; j++) {
1919 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1920 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0,
1921 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1924 //Create the buttons for reload and close
1925 qApp->processEvents();
1926 QTreePushButton* cButton = new QTreePushButton;
1927 cButton->setItem(item);
1928 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1929 cButton->setToolTip(tr("close image"));
1930 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1931 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1932 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1934 QTreePushButton* rButton = new QTreePushButton;
1935 rButton->setItem(item);
1936 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1937 rButton->setToolTip(tr("reload image"));
1938 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1939 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1940 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1942 DataTree->topLevelItem(index)->setExpanded(1);
1943 DataTree->topLevelItem(index)->addChild(item);
1944 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1945 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1947 //set the id of the image
1948 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1949 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1951 qApp->processEvents();
1953 QApplication::restoreOverrideCursor();
1955 QApplication::restoreOverrideCursor();
1956 QString error = "Cannot import the new image.\n";
1957 error += mSlicerManagers[index]->GetLastError().c_str();
1958 QMessageBox::information(this,tr("Problem reading image !"),error);
1961 QString error = "Cannot import the new image.\n";
1962 QMessageBox::information(this,tr("Problem reading image !"),error);
1966 //------------------------------------------------------------------------------
1969 //------------------------------------------------------------------------------
1970 void vvMainWindow::OpenField()
1972 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1973 //check if a vector field has already been added
1974 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1975 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector") {
1976 QString error = "Cannot add more than one vector field\n";
1977 error += "Please remove first ";
1978 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1979 QMessageBox::information(this,tr("Problem adding vector field!"),error);
1983 QString Extensions = "Images ( *.mhd)";
1984 Extensions += ";;Images ( *.vf)";
1985 QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
1986 if (!file.isEmpty())
1987 AddField(file,index);
1989 //------------------------------------------------------------------------------
1992 //------------------------------------------------------------------------------
1993 void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
1995 //create an item in the tree with good settings
1996 QTreeWidgetItem *item = new QTreeWidgetItem();
1997 item->setData(0,Qt::UserRole,filename.toStdString().c_str());
1998 item->setData(1,Qt::UserRole,tr("vector"));
1999 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename);
2000 qApp->processEvents();
2002 for (int j = 1; j <= 4; j++) {
2003 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2004 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("vector",0,
2005 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
2008 //Create the buttons for reload and close
2009 qApp->processEvents();
2010 QTreePushButton* cButton = new QTreePushButton;
2011 cButton->setItem(item);
2012 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2013 cButton->setToolTip(tr("close vector field"));
2014 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2015 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2016 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2018 QTreePushButton* rButton = new QTreePushButton;
2019 rButton->setItem(item);
2020 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2021 rButton->setToolTip(tr("reload vector field"));
2022 rButton->setEnabled(from_disk);
2023 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2024 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2025 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2027 DataTree->topLevelItem(index)->setExpanded(1);
2028 DataTree->topLevelItem(index)->addChild(item);
2029 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2030 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2032 //set the id of the image
2033 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2034 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2036 qApp->processEvents();
2038 QApplication::restoreOverrideCursor();
2040 //------------------------------------------------------------------------------
2043 //------------------------------------------------------------------------------
2044 void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
2046 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2047 vvSlicerManager* imageManager = mSlicerManagers[index];
2048 if (imageManager->SetVF(vf,file.toStdString())) {
2049 AddFieldEntry(file,index,false);
2051 QString error = "Cannot import the vector field for this image.\n";
2052 error += imageManager->GetLastError().c_str();
2053 QMessageBox::information(this,tr("Problem reading VF !"),error);
2055 QApplication::restoreOverrideCursor();
2057 //------------------------------------------------------------------------------
2060 //------------------------------------------------------------------------------
2061 void vvMainWindow::AddField(QString file,int index)
2063 if (QFile::exists(file)) {
2064 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2066 //init the progress events
2067 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2068 vvProgressDialog progress("Opening " + file.toStdString());
2069 qApp->processEvents();
2071 //read the vector and put it in the current mSlicerManager
2072 vvSlicerManager* imageManager = mSlicerManagers[index];
2073 qApp->processEvents();
2075 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2076 if (imageManager->SetVF(file.toStdString())) {
2077 imageManager->Render();
2078 AddFieldEntry(file,index,true);
2080 QApplication::restoreOverrideCursor();
2081 QString error = "Cannot import the vector field for this image.\n";
2082 error += imageManager->GetLastError().c_str();
2083 QMessageBox::information(this,tr("Problem reading VF !"),error);
2086 QMessageBox::information(this,tr("Problem reading VF !"),"File doesn't exist!");
2089 //------------------------------------------------------------------------------
2092 //------------------------------------------------------------------------------
2093 void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width)
2095 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2096 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
2097 for (int i = 0; i < 4; i++) {
2098 mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
2099 mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
2100 mSlicerManagers[index]->GetSlicer(i)->SetVFWidth(width);
2102 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
2104 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(0);
2108 //------------------------------------------------------------------------------
2111 //------------------------------------------------------------------------------
2112 void vvMainWindow::SetOverlayProperty(int color)
2114 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2115 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
2116 mSlicerManagers[index]->SetOverlayColor(color);
2117 mSlicerManagers[index]->SetColorMap(0);
2118 mSlicerManagers[index]->Render();
2121 //------------------------------------------------------------------------------
2123 //------------------------------------------------------------------------------
2124 void vvMainWindow::SetFusionProperty(int opacity, int colormap,double window, double level)
2126 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2127 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
2128 mSlicerManagers[index]->SetFusionOpacity(opacity);
2129 mSlicerManagers[index]->SetFusionColorMap(colormap);
2130 mSlicerManagers[index]->SetFusionWindow(window);
2131 mSlicerManagers[index]->SetFusionLevel(level);
2132 mSlicerManagers[index]->SetColorMap(0);
2133 mSlicerManagers[index]->Render();
2136 //------------------------------------------------------------------------------
2138 //------------------------------------------------------------------------------
2139 void vvMainWindow::SaveAs()
2141 if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
2142 QMessageBox::warning(this,tr("Unsupported type"),tr("Sorry, saving a vector field is unsupported for the moment"));
2146 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2147 int dimension = mSlicerManagers[index]->GetDimension();
2148 QStringList OutputListeFormat;
2149 OutputListeFormat.clear();
2150 if (dimension == 1) {
2151 OutputListeFormat.push_back(".mhd");
2153 if (dimension == 2) {
2154 OutputListeFormat.push_back(".bmp");
2155 OutputListeFormat.push_back(".png");
2156 OutputListeFormat.push_back(".jpeg");
2157 OutputListeFormat.push_back(".tif");
2158 OutputListeFormat.push_back(".mhd");
2159 OutputListeFormat.push_back(".hdr");
2160 OutputListeFormat.push_back(".vox");
2161 } else if (dimension == 3) {
2162 OutputListeFormat.push_back(".mhd");
2163 OutputListeFormat.push_back(".hdr");
2164 OutputListeFormat.push_back(".vox");
2165 } else if (dimension == 4) {
2166 OutputListeFormat.push_back(".mhd");
2168 QString Extensions = "AllFiles(*.*)";
2169 for (int i = 0; i < OutputListeFormat.count(); i++) {
2170 Extensions += ";;Images ( *";
2171 Extensions += OutputListeFormat[i];
2174 QString fileName = QFileDialog::getSaveFileName(this,
2176 mSlicerManagers[index]->GetFileName().c_str(),
2178 if (!fileName.isEmpty()) {
2179 std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
2180 if (OutputListeFormat.contains(
2181 fileformat.c_str())) {
2182 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2183 std::string action = "Saving";
2184 vvProgressDialog progress("Saving "+fileName.toStdString());
2185 qApp->processEvents();
2186 vvImageWriter *writer = new vvImageWriter;
2187 writer->SetOutputFileName(fileName.toStdString());
2188 writer->SetInput(mSlicerManagers[index]->GetImage());
2190 QApplication::restoreOverrideCursor();
2191 if (writer->GetLastError().size()) {
2192 QString error = "Saving did not succeed\n";
2193 error += writer->GetLastError().c_str();
2194 QMessageBox::information(this,tr("Saving Problem"),error);
2198 QString error = fileformat.c_str();
2199 if (error.isEmpty())
2200 error += "no file format specified !";
2202 error += " format unknown !!!\n";
2203 QMessageBox::information(this,tr("Saving Problem"),error);
2208 //------------------------------------------------------------------------------
2211 //------------------------------------------------------------------------------
2212 void vvMainWindow::AddLink(QString image1,QString image2)
2214 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2215 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2216 mSlicerManagers[i]->AddLink(image2.toStdString());
2218 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2219 mSlicerManagers[i]->AddLink(image1.toStdString());
2223 //------------------------------------------------------------------------------
2226 //------------------------------------------------------------------------------
2227 void vvMainWindow::RemoveLink(QString image1,QString image2)
2229 // DD("vvMainWindow:RemoveLink");
2230 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2231 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2232 mSlicerManagers[i]->RemoveLink(image2.toStdString());
2234 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2235 mSlicerManagers[i]->RemoveLink(image1.toStdString());
2239 //------------------------------------------------------------------------------
2241 //------------------------------------------------------------------------------
2242 void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset)
2245 while(sm != mSlicerManagers[index])
2247 index = (index+offset) % mSlicerManagers.size();
2249 QTreeWidgetItem* item = GetItemFromSlicerManager(mSlicerManagers[index]);
2250 //CurrentImageChanged(mSlicerManagers[index]->GetId()); //select new image
2251 item->setData(slicer+1,Qt::CheckStateRole,2); //change checkbox
2252 DisplayChanged(item,slicer+1);
2254 //------------------------------------------------------------------------------
2256 void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
2258 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2259 if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
2260 for (int j = 0; j < 4; j++) {
2261 mSlicerManagers[i]->SetTSliceInSlicer(value,j);
2262 //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
2263 //UpdateTSlice(j,value);
2265 mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
2270 //------------------------------------------------------------------------------
2273 //------------------------------------------------------------------------------
2274 void vvMainWindow::NOHorizontalSliderMoved()
2276 // if (mCurrentTime == NOHorizontalSlider->value()) return;
2277 HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
2278 // mCurrentTime = NOHorizontalSlider->value();
2280 //------------------------------------------------------------------------------
2283 //------------------------------------------------------------------------------
2284 void vvMainWindow::NEHorizontalSliderMoved()
2286 // if (mCurrentTime == NEHorizontalSlider->value()) return;
2287 HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
2288 // mCurrentTime = NEHorizontalSlider->value();
2290 //------------------------------------------------------------------------------
2293 //------------------------------------------------------------------------------
2294 void vvMainWindow::SOHorizontalSliderMoved()
2296 // if (mCurrentTime == SOHorizontalSlider->value()) return;
2297 HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
2298 // mCurrentTime = SOHorizontalSlider->value();
2300 //------------------------------------------------------------------------------
2303 //------------------------------------------------------------------------------
2304 void vvMainWindow::SEHorizontalSliderMoved()
2306 // if (mCurrentTime == SEHorizontalSlider->value()) return;
2307 HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
2308 // mCurrentTime = SEHorizontalSlider->value();
2310 //------------------------------------------------------------------------------
2312 //------------------------------------------------------------------------------
2313 void vvMainWindow::NOVerticalSliderChanged()
2315 static int value=-1;
2316 if (value == NOVerticalSlider->value()) return;
2317 else value = NOVerticalSlider->value();
2318 // int value = NOVerticalSlider->value();
2319 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2320 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2321 if (mSlicerManagers[i]->GetSlicer(0)->GetSlice() != value) {
2322 mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
2323 mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
2325 // If nor Update/Render -> slider not work
2326 // only render = ok navigation, but for contour Update needed but slower ?
2328 mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
2329 //mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2335 //------------------------------------------------------------------------------
2338 //------------------------------------------------------------------------------
2339 void vvMainWindow::NEVerticalSliderChanged()
2341 static int value=-1;
2342 if (value == NEVerticalSlider->value()) return;
2343 else value = NEVerticalSlider->value();
2344 // int value = NEVerticalSlider->value();
2345 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2346 if (DataTree->topLevelItem(i)->data(COLUMN_UR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2347 if (mSlicerManagers[i]->GetSlicer(1)->GetSlice() != value) {
2348 mSlicerManagers[i]->GetSlicer(1)->SetSlice(value);
2349 mSlicerManagers[i]->VerticalSliderHasChanged(1, value);
2350 mSlicerManagers[i]->UpdateSlice(1);
2351 //mSlicerManagers[i]->GetSlicer(1)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2357 //------------------------------------------------------------------------------
2360 //------------------------------------------------------------------------------
2361 void vvMainWindow::SOVerticalSliderChanged()
2363 // DD("SOVerticalSliderChanged");
2364 static int value=-1;
2366 // DD(SOVerticalSlider->value());
2367 if (value == SOVerticalSlider->value()) return;
2368 else value = SOVerticalSlider->value();
2369 //int value = SOVerticalSlider->value();
2370 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2371 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2372 if (mSlicerManagers[i]->GetSlicer(2)->GetSlice() != value) {
2373 mSlicerManagers[i]->GetSlicer(2)->SetSlice(value);
2374 mSlicerManagers[i]->VerticalSliderHasChanged(2, value);
2375 mSlicerManagers[i]->UpdateSlice(2);
2376 //mSlicerManagers[i]->GetSlicer(2)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2378 // else { DD("avoid SOVerticalSlider slicer update"); }
2383 //------------------------------------------------------------------------------
2386 //------------------------------------------------------------------------------
2387 void vvMainWindow::SEVerticalSliderChanged()
2389 static int value=-1;
2390 if (value == SEVerticalSlider->value()) return;
2391 else value = SEVerticalSlider->value();
2392 // int value = SEVerticalSlider->value();
2393 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2394 if (DataTree->topLevelItem(i)->data(COLUMN_DR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2395 if (mSlicerManagers[i]->GetSlicer(3)->GetSlice() != value) {
2396 mSlicerManagers[i]->GetSlicer(3)->SetSlice(value);
2397 mSlicerManagers[i]->VerticalSliderHasChanged(3, value);
2398 mSlicerManagers[i]->UpdateSlice(3);
2399 //mSlicerManagers[i]->GetSlicer(3)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2405 //------------------------------------------------------------------------------
2408 //------------------------------------------------------------------------------
2409 void vvMainWindow::UpdateSlice(int slicer, int slice)
2411 // DD("vvMainWindow::UpdateSlice");
2415 // if (slice != NOVerticalSlider->value())
2416 NOVerticalSlider->setValue(slice);
2419 NEVerticalSlider->setValue(slice);
2422 SOVerticalSlider->setValue(slice);
2425 SEVerticalSlider->setValue(slice);
2429 // DD("vvMainWindow:UpdateSlice END");
2431 //------------------------------------------------------------------------------
2434 //------------------------------------------------------------------------------
2435 void vvMainWindow::UpdateTSlice(int slicer, int slice)
2439 NOHorizontalSlider->setValue(slice);
2442 NEHorizontalSlider->setValue(slice);
2445 SOHorizontalSlider->setValue(slice);
2448 SEHorizontalSlider->setValue(slice);
2452 //------------------------------------------------------------------------------
2455 //------------------------------------------------------------------------------
2456 void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax)
2458 int position = int((min+max)/2);
2459 int tPosition = int((tmin+tmax)/2);
2461 NOVerticalSlider->setValue(position);
2462 NOVerticalSlider->setRange(min,max);
2463 NOHorizontalSlider->setRange(tmin,tmax);
2464 NOHorizontalSlider->setValue(tPosition);
2465 } else if (slicer == 1) {
2466 NEVerticalSlider->setValue(position);
2467 NEVerticalSlider->setRange(min,max);
2468 NEHorizontalSlider->setRange(tmin,tmax);
2469 NEHorizontalSlider->setValue(tPosition);
2470 } else if (slicer == 2) {
2471 SOVerticalSlider->setValue(position);
2472 SOVerticalSlider->setRange(min,max);
2473 SOHorizontalSlider->setRange(tmin,tmax);
2474 SOHorizontalSlider->setValue(tPosition);
2475 } else if (slicer == 3) {
2476 SEVerticalSlider->setValue(position);
2477 SEVerticalSlider->setRange(min,max);
2478 SEHorizontalSlider->setRange(tmin,tmax);
2479 SEHorizontalSlider->setValue(tPosition);
2482 //------------------------------------------------------------------------------
2485 //------------------------------------------------------------------------------
2486 void vvMainWindow::SaveNOScreenshot()
2488 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2489 w2i->SetInput(NOViewWidget->GetRenderWindow());
2491 SaveScreenshot(w2i->GetOutput());
2494 //------------------------------------------------------------------------------
2497 //------------------------------------------------------------------------------
2498 void vvMainWindow::SaveNEScreenshot()
2500 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2501 w2i->SetInput(NEViewWidget->GetRenderWindow());
2503 SaveScreenshot(w2i->GetOutput());
2506 //------------------------------------------------------------------------------
2509 //------------------------------------------------------------------------------
2510 void vvMainWindow::SaveSOScreenshot()
2512 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2513 w2i->SetInput(SOViewWidget->GetRenderWindow());
2515 SaveScreenshot(w2i->GetOutput());
2518 //------------------------------------------------------------------------------
2521 //------------------------------------------------------------------------------
2522 void vvMainWindow::SaveSEScreenshot()
2524 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2525 w2i->SetInput(SEViewWidget->GetRenderWindow());
2527 SaveScreenshot(w2i->GetOutput());
2530 //------------------------------------------------------------------------------
2533 //------------------------------------------------------------------------------
2534 void vvMainWindow::SaveScreenshot(vtkImageData* image)
2536 QString Extensions = "Images( *.png);;";
2537 Extensions += "Images( *.jpg);;";
2538 Extensions += "Images( *.bmp);;";
2539 Extensions += "Images( *.tif);;";
2540 Extensions += "Images( *.ppm)";
2541 QString fileName = QFileDialog::getSaveFileName(this,
2543 itksys::SystemTools::GetFilenamePath(
2544 mSlicerManagers[0]->GetFileName()).c_str(),
2546 if (!fileName.isEmpty()) {
2547 const char *ext = fileName.toStdString().c_str() + strlen(fileName.toStdString().c_str()) - 4;
2548 if (!strcmp(ext, ".bmp")) {
2549 vtkBMPWriter *bmp = vtkBMPWriter::New();
2550 bmp->SetInput(image);
2551 bmp->SetFileName(fileName.toStdString().c_str());
2554 } else if (!strcmp(ext, ".tif")) {
2555 vtkTIFFWriter *tif = vtkTIFFWriter::New();
2556 tif->SetInput(image);
2557 tif->SetFileName(fileName.toStdString().c_str());
2560 } else if (!strcmp(ext, ".ppm")) {
2561 vtkPNMWriter *pnm = vtkPNMWriter::New();
2562 pnm->SetInput(image);
2563 pnm->SetFileName(fileName.toStdString().c_str());
2566 } else if (!strcmp(ext, ".png")) {
2567 vtkPNGWriter *png = vtkPNGWriter::New();
2568 png->SetInput(image);
2569 png->SetFileName(fileName.toStdString().c_str());
2572 } else if (!strcmp(ext, ".jpg")) {
2573 vtkJPEGWriter *jpg = vtkJPEGWriter::New();
2574 jpg->SetInput(image);
2575 jpg->SetFileName(fileName.toStdString().c_str());
2579 QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
2584 //------------------------------------------------------------------------------
2587 //------------------------------------------------------------------------------
2588 void vvMainWindow::GoToCursor()
2590 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2591 for (int column = 1; column < 5; column++) {
2592 if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1) {
2593 double* cursorPos = mSlicerManagers[index]->GetSlicer(column-1)->GetCursorPosition();
2594 mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
2595 cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
2596 mSlicerManagers[index]->UpdateViews(1,column-1);
2597 mSlicerManagers[index]->UpdateLinked(column-1);
2602 //------------------------------------------------------------------------------
2604 //------------------------------------------------------------------------------
2605 void vvMainWindow::PlayPause()
2609 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_play.png")));
2613 int image_number=DataTree->topLevelItemCount();
2615 for (int i=0; i<image_number; i++)
2616 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1) {
2622 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
2623 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2627 //------------------------------------------------------------------------------
2629 //------------------------------------------------------------------------------
2630 void vvMainWindow::PlayNext()
2632 if (playMode && !this->isHidden()) {
2633 int image_number=DataTree->topLevelItemCount();
2634 ///Only play one slicer per SM, and only if the SM is being displayed
2635 for (int i=0; i<image_number; i++)
2636 for (int j=0; j<4; j++)
2637 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1 &&
2638 DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
2639 mSlicerManagers[i]->SetNextTSlice(j);
2642 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2645 //------------------------------------------------------------------------------
2647 void vvMainWindow::ShowLastImage()
2649 if (mSlicerManagers.size() > 1) {
2650 QTreeWidgetItem * item=DataTree->topLevelItem(DataTree->topLevelItemCount()-1);
2651 CurrentImageChanged(mSlicerManagers.back()->GetId()); //select new image
2652 item->setData(1,Qt::CheckStateRole,2); //show the new image in the first panel
2653 DisplayChanged(item,1);
2657 //------------------------------------------------------------------------------
2658 void vvMainWindow::UpdateRenderWindows()
2660 if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
2661 if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
2662 if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
2663 if (SEViewWidget->GetRenderWindow()) SEViewWidget->GetRenderWindow()->Render();
2665 //------------------------------------------------------------------------------
2667 //------------------------------------------------------------------------------
2668 void vvMainWindow::SegmentationOnCurrentImage()
2670 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2672 vvSegmentationDialog segmentation;
2673 segmentation.SetImage(mSlicerManagers[index]->GetSlicer(0)->GetImage());
2674 segmentation.exec();
2676 //------------------------------------------------------------------------------
2678 void vvMainWindow::SurfaceViewerLaunch()
2680 vvSurfaceViewerDialog surfaceViewer;
2681 surfaceViewer.exec();
2684 //------------------------------------------------------------------------------
2685 void vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
2687 vvSlicerManager* slicer_manager = new vvSlicerManager(4);
2688 slicer_manager->SetImage(image);
2689 slicer_manager->SetFilename(filename);
2690 mSlicerManagers.push_back(slicer_manager);
2692 //create an item in the tree with good settings
2693 QTreeWidgetItem *item = new QTreeWidgetItem();
2694 item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
2695 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
2696 qApp->processEvents();
2698 for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1);
2700 //Create the buttons for reload and close
2701 qApp->processEvents();
2702 QTreePushButton* cButton = new QTreePushButton;
2703 cButton->setItem(item);
2704 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2705 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2706 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2707 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2709 QTreePushButton* rButton = new QTreePushButton;
2710 rButton->setItem(item);
2711 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2712 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2713 rButton->setEnabled(0);
2714 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2715 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2717 DataTree->addTopLevelItem(item);
2718 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2719 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2721 //set the id of the image
2722 QString id = slicer_manager->GetFileName().c_str() + QString::number(mSlicerManagers.size()-1);
2723 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2724 mSlicerManagers.back()->SetId(id.toStdString());
2726 linkPanel->addImage(filename, id.toStdString());
2728 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
2729 this, SLOT(CurrentImageChanged(std::string)));
2730 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
2731 this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
2732 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
2733 this, SLOT(VectorChanged(int,double,double,double, double)));
2734 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
2735 this, SLOT(OverlayChanged(int,double,double)));
2736 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
2737 this, SLOT(FusionChanged(int,double)));
2738 connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
2739 this,SLOT(WindowsChanged(int, int, int)));
2740 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
2741 this,SLOT(WindowLevelChanged(double, double, int, int)));
2742 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
2743 this,SLOT(UpdateSlice(int,int)));
2744 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
2745 this,SLOT(UpdateTSlice(int, int)));
2746 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
2747 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
2748 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
2749 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
2750 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)),
2751 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*)));
2752 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
2753 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
2754 connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
2756 qApp->processEvents();
2760 qApp->processEvents();
2762 //------------------------------------------------------------------------------
2765 //------------------------------------------------------------------------------
2766 void vvMainWindow::UpdateCurrentSlicer()
2769 if (DataTree->selectedItems().size() > 0) {
2770 index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2772 mSlicerManagerCurrentIndex = index;
2774 //------------------------------------------------------------------------------