1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ======================================================================-====*/
20 #include <QMessageBox>
21 #include <QInputDialog>
23 #include "QTreePushButton.h"
26 #include "vvMainWindow.h"
27 #include "vvHelpDialog.h"
28 #include "vvDocumentation.h"
29 #include "vvProgressDialog.h"
30 #include "vvQDicomSeriesSelector.h"
31 #include "vvSlicerManager.h"
32 #include "clitkImageCommon.h"
34 #include "vvInteractorStyleNavigator.h"
35 #include "vvImageWriter.h"
36 #include "vvSegmentationDialog.h"
37 #include "vvSurfaceViewerDialog.h"
38 #include "vvDeformationDialog.h"
39 #include "vvImageWarp.h"
41 #include "vvMaximumIntensityProjection.h"
42 #include "vvMidPosition.h"
44 #include "vvStructSelector.h"
45 #include "vvMeshReader.h"
46 #include "vvConstants.h"
50 #include "itkImageFileReader.h"
51 #include "itkByteSwapper.h"
52 #include "itkCommand.h"
53 #include "itkNumericSeriesFileNames.h"
56 #include "vtkImageData.h"
57 #include "vtkImageActor.h"
58 #include "vtkCornerAnnotation.h"
59 #include "vtkRenderWindow.h"
60 #include "vtkRenderWindowInteractor.h"
61 #include "vtkRenderer.h"
62 #include "vtkRendererCollection.h"
63 #include "vtkWindowToImageFilter.h"
64 #include "vtkBMPWriter.h"
65 #include "vtkTIFFWriter.h"
66 #include "vtkPNMWriter.h"
67 #include "vtkPNGWriter.h"
68 #include "vtkJPEGWriter.h"
74 #define COLUMN_UL_VIEW 1
75 #define COLUMN_UR_VIEW 2
76 #define COLUMN_DL_VIEW 3
77 #define COLUMN_DR_VIEW 4
78 #define COLUMN_CLOSE_IMAGE 5
79 #define COLUMN_RELOAD_IMAGE 6
80 #define COLUMN_IMAGE_NAME 7
82 #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.hdr *.vox *.his *.xdr)"
85 0,Qt::UserRole full filename
86 1,Qt::CheckStateRole checkbutton UL View
87 1,Qt::UserRole overlay, fusion or vector
88 2,Qt::CheckStateRole checkbutton UR View
89 3,Qt::CheckStateRole checkbutton DL View
90 4,Qt::CheckStateRole checkbutton DR View
92 5,Qt::UserRole mSlicerManager id*/
94 //------------------------------------------------------------------------------
95 vvMainWindow::vvMainWindow():vvMainWindowBase()
97 setupUi(this); // this sets up the GUI
100 mMenuTools = menuTools;
101 mContextMenu = &contextMenu;
102 mMenuExperimentalTools = menuExperimental;
105 mCurrentSelectedImageId = "";
107 //Init the contextMenu
108 this->setContextMenuPolicy(Qt::CustomContextMenu);
109 contextActions.resize(0);
110 QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
111 tr("O&pen new Image"));
112 actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
113 connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
114 contextActions.push_back(actionOpen_new_image);
115 contextMenu.addSeparator();
117 QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
118 tr("Close Current Image"));
119 connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
120 contextActions.push_back(actionClose_Image);
122 QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
123 tr("Reload Current Image"));
124 connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
125 contextActions.push_back(actionReload_image);
127 QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
128 tr("Save Current Image"));
129 connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
130 contextActions.push_back(actionSave_image);
132 contextMenu.addSeparator();
134 // QAction* actionCrop_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/crop.png")),
135 // tr("Crop Current Image"));
136 // connect(actionCrop_image,SIGNAL(triggered()),this,SLOT(CropImage()));
137 // contextActions.push_back(actionCrop_image);
139 QAction* actionSplit_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/cut.png")),
140 tr("Split Current Image"));
141 connect(actionSplit_image,SIGNAL(triggered()),this,SLOT(SplitImage()));
142 contextActions.push_back(actionSplit_image);
144 contextMenu.addSeparator();
146 contextMenu.addAction(actionAdd_VF_to_current_Image);
147 contextActions.push_back(actionAdd_VF_to_current_Image);
149 QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
150 tr("Add overlay image to current image"));
151 contextMenu.addAction(actionAdd_Overlay_to_current_Image);
152 contextActions.push_back(actionAdd_Overlay_to_current_Image);
154 connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
156 contextMenu.addAction(actionAdd_fusion_image);
157 connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
158 contextActions.push_back(actionAdd_fusion_image);
162 QMenu * m = new QMenu(menubar);
164 // m->setObjectName(QString::fromUtf8("TOTOTO"));
165 contextMenu.addMenu(m);
166 QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
168 QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
172 connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
176 mSlicerManagers.resize(0);
186 header.append("Name");
188 DataTree->setHeaderLabels(header);
189 DataTree->resizeColumnToContents(COLUMN_TREE);
190 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
191 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
192 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
193 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
194 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
195 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
196 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
199 documentation = new vvDocumentation();
200 help_dialog = new vvHelpDialog();
201 dicomSeriesSelector = new vvDicomSeriesSelector();
203 inverseButton->setEnabled(0);
204 actionAdd_Overlay_to_current_Image->setEnabled(0);
205 actionSave_As->setEnabled(0);
206 actionAdd_VF_to_current_Image->setEnabled(0);
207 actionAdd_fusion_image->setEnabled(0);
210 verticalSliders.push_back(NOVerticalSlider);
211 verticalSliders.push_back(NEVerticalSlider);
212 verticalSliders.push_back(SOVerticalSlider);
213 verticalSliders.push_back(SEVerticalSlider);
215 for (int i =0; i < 4; i++)
216 verticalSliders[i]->hide();
218 horizontalSliders.push_back(NOHorizontalSlider);
219 horizontalSliders.push_back(NEHorizontalSlider);
220 horizontalSliders.push_back(SOHorizontalSlider);
221 horizontalSliders.push_back(SEHorizontalSlider);
223 for (int i =0; i < 4; i++)
224 horizontalSliders[i]->hide();
227 connect(NOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOVerticalSliderChanged()));
228 connect(NEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEVerticalSliderChanged()));
229 connect(SOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOVerticalSliderChanged()));
230 connect(SEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEVerticalSliderChanged()));
232 connect(NOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOHorizontalSliderMoved()));
233 connect(NEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEHorizontalSliderMoved()));
234 connect(SOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOHorizontalSliderMoved()));
235 connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved()));
238 connect(actionMaximum_Intensity_Projection,SIGNAL(triggered()),this,SLOT(ComputeMIP()));
239 connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition()));
240 connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration()));
241 connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
242 connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
243 connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
244 connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
245 connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
246 connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
247 connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
248 connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
249 connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
250 connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
251 connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
252 connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
253 connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
255 ///////////////////////////////////////////////
256 connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
257 connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
258 ///////////////////////////////////////////////
260 actionNorth_East_Window->setEnabled(0);
261 actionNorth_West_Window->setEnabled(0);
262 actionSouth_East_Window->setEnabled(0);
263 actionSouth_West_Window->setEnabled(0);
265 connect(actionNorth_East_Window,SIGNAL(triggered()),this,SLOT(SaveNEScreenshot()));
266 connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
267 connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
268 connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
270 connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
271 connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
272 SLOT(DisplayChanged(QTreeWidgetItem*, int)));
274 connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
275 connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
276 connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
277 connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
278 connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
279 connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
282 connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
284 connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
285 connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
286 connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int)),this,SLOT(SetVFProperty(int,int,int,int)));
287 connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int)),this,SLOT(SetOverlayProperty(int)));
288 connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,double,double)),
289 this,SLOT(SetFusionProperty(int,int,double,double)));
290 connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
294 playButton->setEnabled(0);
295 frameRateLabel->setEnabled(0);
296 frameRateSpinBox->setEnabled(0);
297 connect(playButton, SIGNAL(clicked()),this,SLOT(PlayPause()));
298 connect(frameRateSpinBox, SIGNAL(valueChanged(int)),this,SLOT(ChangeFrameRate(int)));
300 goToCursorPushButton->setEnabled(0);
301 connect(goToCursorPushButton, SIGNAL(clicked()),this,SLOT(GoToCursor()));
303 NOViewWidget->hide();
304 NEViewWidget->hide();
305 SOViewWidget->hide();
306 SEViewWidget->hide();
308 //Recently opened files
309 std::list<std::string> recent_files = GetRecentlyOpenedImages();
310 if ( !recent_files.empty() ) {
311 QMenu * rmenu = new QMenu("Recently opened files...");
312 rmenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
313 menuFile->insertMenu(actionOpen_Image_With_Time,rmenu);
314 for (std::list<std::string>::iterator i = recent_files.begin(); i!=recent_files.end(); i++) {
315 QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")),
317 rmenu->addAction(current);
318 connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage()));
322 // Adding all new tools (insertion in the menu)
323 vvToolManager::GetInstance()->InsertToolsInMenu(this);
325 if (!CLITK_EXPERIMENTAL)
326 menuExperimental->menuAction()->setVisible(false);
328 //------------------------------------------------------------------------------
331 //------------------------------------------------------------------------------
332 void vvMainWindow::ComputeMIP()
334 vvMaximumIntensityProjection mip;
335 vvSlicerManager* selected_slicer = mSlicerManagers[GetSlicerIndexFromItem(DataTree->selectedItems()[0])];
336 QFileInfo info(selected_slicer->GetFileName().c_str());
337 mip.Compute(selected_slicer);
339 AddImage(mip.GetOutput(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_mip.mhd");
341 //------------------------------------------------------------------------------
344 //------------------------------------------------------------------------------
345 void vvMainWindow::ComputeMidPosition()
348 int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
349 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
350 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
353 midp.slicer_manager = mSlicerManagers[index];
354 midp.reference_image_index = ref;
355 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
358 QMessageBox::warning(this, "Error computing midposition image",midp.error_message.c_str());
360 QFileInfo info(midp.slicer_manager->GetFileName().c_str());
361 AddImage(midp.output,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_midposition.mhd");
363 QApplication::restoreOverrideCursor();
366 //------------------------------------------------------------------------------
369 //------------------------------------------------------------------------------
370 void vvMainWindow::AddContour(int image_index, vvMesh::Pointer contour, bool propagation)
372 QTreeWidgetItem *item = new QTreeWidgetItem();
373 item->setData(0,Qt::UserRole,"filename.vtk");
374 item->setData(1,Qt::UserRole,tr("contour"));
376 brush.setColor(QColor(contour->r*255,contour->g*255,contour->b*255));
377 brush.setStyle(Qt::SolidPattern);
378 item->setData(COLUMN_IMAGE_NAME,Qt::BackgroundRole,brush);
379 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
381 for (int j = 1; j <= 4; j++)
382 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(image_index)->data(j,Qt::CheckStateRole));
384 QTreePushButton* cButton = new QTreePushButton;
385 cButton->setItem(item);
386 cButton->setColumn(COLUMN_CLOSE_IMAGE);
387 cButton->setToolTip(tr("close image"));
388 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
389 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
390 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
392 QTreePushButton* rButton = new QTreePushButton;
393 rButton->setItem(item);
394 rButton->setColumn(COLUMN_RELOAD_IMAGE);
395 rButton->setToolTip(tr("reload image"));
396 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
397 rButton->setEnabled(false);
399 //connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
400 //this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
402 DataTree->topLevelItem(image_index)->setExpanded(1);
403 DataTree->topLevelItem(image_index)->addChild(item);
404 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
405 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
406 QString id = DataTree->topLevelItem(image_index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
407 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
410 mSlicerManagers[image_index]->AddContour(contour,propagation);
411 mSlicerManagers[image_index]->Render();
413 //------------------------------------------------------------------------------
416 //------------------------------------------------------------------------------
417 void vvMainWindow::OpenVTKContour()
419 if (mSlicerManagers.size() > 0) {
420 QString Extensions = "Images ( *.vtk *.obj)";
421 Extensions += ";;All Files (*)";
422 QString file = QFileDialog::getOpenFileName(this,tr("Open vtkPolyData"),mInputPathName,Extensions);
425 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
426 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
428 reader.SetImage(mSlicerManagers[index]->GetImage());
429 reader.SetModeToVTK();
430 reader.SetFilename(file.toStdString());
432 AddContour(index,reader.GetOutput()[0],false);
433 QApplication::restoreOverrideCursor();
436 //------------------------------------------------------------------------------
439 //------------------------------------------------------------------------------
440 void vvMainWindow::OpenDCStructContour()
442 if (mSlicerManagers.size() > 0) {
443 QString Extensions = "Dicom Files ( *.dcm; RS*)";
444 Extensions += ";;All Files (*)";
445 QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
448 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
450 reader.SetFilename(file.toStdString());
451 vvStructSelector selector;
452 selector.SetStructures(reader.GetROINames());
453 if (!mSlicerManagers[index]->GetVF().IsNull())
454 selector.EnablePropagationCheckBox();
455 if (selector.exec()) {
456 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
457 reader.SetSelectedItems(selector.getSelectedItems());
458 reader.SetImage(mSlicerManagers[index]->GetImage());
459 if (selector.PropagationEnabled())
460 reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
462 std::vector<vvMesh::Pointer> contours=reader.GetOutput();
463 for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
464 i!=contours.end(); i++)
465 AddContour(index,*i,selector.PropagationEnabled());
466 QApplication::restoreOverrideCursor();
470 //------------------------------------------------------------------------------
473 //------------------------------------------------------------------------------
474 void vvMainWindow::ComputeDeformableRegistration()
476 if (mSlicerManagers.size() > 0) {
477 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
478 vvDeformationDialog dialog(index,mSlicerManagers);
480 std::string base_name=itksys::SystemTools::GetFilenameWithoutExtension(mSlicerManagers[dialog.GetInputFileIndex()]->GetFileName());
481 AddField(dialog.GetOutput(),dialog.getFieldFile(),dialog.GetInputFileIndex());
482 WarpImage(dialog.GetSelectedSlicer(),dialog.GetReferenceFrameIndex());
484 std::cout << "Error or user cancellation while computing deformation field..." << std::endl;
485 } else QMessageBox::information(this, "Need to open image","You must open an image first.");
487 //------------------------------------------------------------------------------
490 //------------------------------------------------------------------------------
491 void vvMainWindow::WarpImage()
493 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
494 if (!mSlicerManagers[index]->GetVF().IsNull()) {
496 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
497 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
499 WarpImage(mSlicerManagers[index],ref);
502 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field"));
504 //------------------------------------------------------------------------------
507 //------------------------------------------------------------------------------
508 void vvMainWindow::WarpImage(vvSlicerManager* selected_slicer,int reference_phase)
510 if (!selected_slicer->GetVF().IsNull()) {
511 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
512 QFileInfo info(selected_slicer->GetFileName().c_str());
513 vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
514 reference_phase,this);
515 if (warp.ComputeWarpedImage()) {
516 AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
517 AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
518 AddImage(warp.GetJacobianImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_jacobian.mhd");
519 QApplication::restoreOverrideCursor();
521 QApplication::restoreOverrideCursor();
522 QMessageBox::warning(this,tr("Different spacings"),tr("The vector field and image spacings must be the same in order to warp."));
525 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field."));
527 //------------------------------------------------------------------------------
530 //------------------------------------------------------------------------------
531 vvMainWindow::~vvMainWindow()
533 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
534 if (mSlicerManagers[i] != NULL)
535 delete mSlicerManagers[i];
538 //------------------------------------------------------------------------------
540 //------------------------------------------------------------------------------
541 QTabWidget * vvMainWindow::GetTab()
545 //------------------------------------------------------------------------------
548 //------------------------------------------------------------------------------
549 void vvMainWindow::MergeImages()
551 QString Extensions = EXTENSIONS;
552 Extensions += ";;All Files (*)";
553 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images"),mInputPathName,Extensions);
556 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
557 std::vector<std::string> vector;
559 unsigned int currentDim = 0;
560 std::vector<double> currentSpacing;
561 std::vector<int> currentSize;
562 std::vector<double> currentOrigin;
564 for (int i = 0; i < files.size(); i++) {
565 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
566 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
567 reader->SetFileName(files[i].toStdString().c_str());
568 reader->ReadImageInformation();
570 //NOViewWidget->hide();
571 //NEViewWidget->hide();
572 //SOViewWidget->hide();
573 //SEViewWidget->hide();
575 currentDim = reader->GetNumberOfDimensions();
577 for (unsigned int j = 0; j < currentDim; j++) {
580 currentSpacing.resize(currentDim);
581 currentSize.resize(currentDim);
582 currentOrigin.resize(currentDim);
584 currentOrigin[j] = reader->GetOrigin(j);
585 currentSpacing[j] = reader->GetSpacing(j);
586 currentSize[j] = reader->GetDimensions(j);
587 } else if (currentDim != reader->GetNumberOfDimensions()
588 || currentSpacing[j] != reader->GetSpacing(j)
589 || currentSize[j] != (int)reader->GetDimensions(j)
590 || currentOrigin[j] != reader->GetOrigin(j)) {
591 QString error = "Cannot read file (too different from others ";
592 error += files[i].toStdString().c_str();
593 QMessageBox::information(this,tr("Reading problem"),error);
599 vector.push_back(files[i].toStdString());
602 if (vector.size() > 0)
603 LoadImages(vector, MERGED);
605 //------------------------------------------------------------------------------
608 //------------------------------------------------------------------------------
609 void vvMainWindow::MergeImagesWithTime()
611 QString Extensions = EXTENSIONS;
612 Extensions += ";;All Files (*)";
613 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images With Time"),mInputPathName,Extensions);
616 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
617 std::vector<std::string> vector;
619 unsigned int currentDim = 0;
620 std::vector<double> currentSpacing;
621 std::vector<int> currentSize;
622 std::vector<double> currentOrigin;
624 for (int i = 0; i < files.size(); i++) {
625 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
626 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
628 reader->SetFileName(files[i].toStdString().c_str());
629 reader->ReadImageInformation();
631 currentDim = reader->GetNumberOfDimensions();
633 for (unsigned int j = 0; j < currentDim; j++) {
636 currentSpacing.resize(currentDim);
637 currentSize.resize(currentDim);
638 currentOrigin.resize(currentDim);
640 currentOrigin[j] = reader->GetOrigin(j);
641 currentSpacing[j] = reader->GetSpacing(j);
642 currentSize[j] = reader->GetDimensions(j);
643 } else if (currentDim != reader->GetNumberOfDimensions()
644 || currentSpacing[j] != reader->GetSpacing(j)
645 || currentSize[j] != (int)reader->GetDimensions(j)
646 || currentOrigin[j] != reader->GetOrigin(j)) {
647 QString error = "Cannot read file (too different from others ";
648 error += files[i].toStdString().c_str();
649 QMessageBox::information(this,tr("Reading problem"),error);
655 vector.push_back(files[i].toStdString());
657 QString error = "Cannot read file info for ";
658 error += files[i].toStdString().c_str();
660 error += "Maybe you're trying to open an image in an unsupported format?\n";
661 QMessageBox::information(this,tr("Reading problem"),error);
664 sort(vector.begin(),vector.end());
665 if (vector.size() > 1)
666 LoadImages(vector, MERGEDWITHTIME);
668 QMessageBox::warning(this,tr("Reading problem"),"You need to select at least two images to merge images with time.\nIf you only want to open one image, please use the \"Open Image\" function.");
670 //------------------------------------------------------------------------------
673 //------------------------------------------------------------------------------
674 void vvMainWindow::OpenDicom()
676 std::vector<std::string> files;
678 std::cout << "dicomSeriesSelector " << std::endl;
679 if (dicomSeriesSelector->exec() == QDialog::Accepted) {
680 files = *(dicomSeriesSelector->GetFilenames());
681 LoadImages(files,DICOM);
684 //------------------------------------------------------------------------------
686 //------------------------------------------------------------------------------
687 void vvMainWindow::OpenImages()
689 QString Extensions = EXTENSIONS;
690 Extensions += ";;All Files (*)";
692 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images"),mInputPathName,Extensions);
695 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
696 std::vector<std::string> vector;
697 for (int i = 0; i < files.size(); i++)
698 vector.push_back(files[i].toStdString());
699 LoadImages(vector, IMAGE);
701 //------------------------------------------------------------------------------
702 void vvMainWindow::OpenRecentImage()
704 QAction * caller = qobject_cast<QAction*>(sender());
705 std::vector<std::string> images;
706 images.push_back(caller->text().toStdString());
707 mInputPathName = itksys::SystemTools::GetFilenamePath(images[0]).c_str();
708 LoadImages(images,IMAGE);
710 //------------------------------------------------------------------------------
713 //------------------------------------------------------------------------------
714 void vvMainWindow::OpenImageWithTime()
716 QString Extensions = EXTENSIONS;
717 Extensions += ";;All Files (*)";
719 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images With Time"),mInputPathName,Extensions);
722 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
723 std::vector<std::string> vector;
724 for (int i = 0; i < files.size(); i++) {
725 vector.push_back(files[i].toStdString());
727 LoadImages(vector, IMAGEWITHTIME);
729 //------------------------------------------------------------------------------
732 //------------------------------------------------------------------------------
733 void vvMainWindow::LoadImages(std::vector<std::string> files, LoadedImageType filetype)
735 //Separate the way to open images and dicoms
737 if (filetype == IMAGE || filetype == IMAGEWITHTIME)
738 fileSize = files.size();
742 //Only add to the list of recently opened files when a single file is opened,
743 //to avoid polluting the list of recently opened files
744 if (files.size() == 1) {
745 QFileInfo finfo=tr(files[0].c_str());
746 AddToRecentlyOpenedImages(finfo.absoluteFilePath().toStdString());
748 //init the progress events
749 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
750 vvProgressDialog progress("Opening " + files[0],fileSize>1);
751 qApp->processEvents();
753 int numberofsuccesulreads=0;
754 //open images as 1 or multiples
755 for (int i = 0; i < fileSize; i++) {
757 progress.SetText("Opening " + files[i]);
758 progress.SetProgress(i,fileSize);
759 qApp->processEvents();
761 //read the image and put it in mSlicerManagers
762 vvSlicerManager* imageManager = new vvSlicerManager(4);
763 qApp->processEvents();
765 bool SetImageSucceed=false;
767 // Change filename if an image with the same already exist
770 for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
771 vvSlicerManager * v = mSlicerManagers[l];
772 // DD(v->GetBaseFileName());
773 // DD(v->GetFileName());
774 if (v->GetBaseFileName() ==
775 vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(files[i]))) {
776 number = std::max(number, v->GetBaseFileNameNumber()+1);
781 if (filetype == IMAGE || filetype == IMAGEWITHTIME)
782 SetImageSucceed = imageManager->SetImage(files[i],filetype, number);
784 SetImageSucceed = imageManager->SetImages(files,filetype, number);
786 if (SetImageSucceed == false) {
787 QApplication::restoreOverrideCursor();
788 QString error = "Cannot open file \n";
789 error += imageManager->GetLastError().c_str();
790 QMessageBox::information(this,tr("Reading problem"),error);
793 mSlicerManagers.push_back(imageManager);
795 //create an item in the tree with good settings
796 QTreeWidgetItem *item = new QTreeWidgetItem();
797 item->setData(0,Qt::UserRole,files[i].c_str());
798 QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
799 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
800 qApp->processEvents();
802 //Create the buttons for reload and close
803 qApp->processEvents();
804 QTreePushButton* cButton = new QTreePushButton;
805 cButton->setItem(item);
806 cButton->setColumn(COLUMN_CLOSE_IMAGE);
807 cButton->setToolTip(tr("close image"));
808 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
809 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
810 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
812 QTreePushButton* rButton = new QTreePushButton;
813 rButton->setItem(item);
814 rButton->setColumn(COLUMN_RELOAD_IMAGE);
815 rButton->setToolTip(tr("reload image"));
816 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
817 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
818 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
820 DataTree->addTopLevelItem(item);
821 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
822 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
824 //set the id of the image
825 QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
826 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
827 mSlicerManagers.back()->SetId(id.toStdString());
829 linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
831 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
832 this,SLOT(CurrentImageChanged(std::string)));
833 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
834 this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
835 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
836 this, SLOT(VectorChanged(int,double,double,double, double)));
837 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
838 this, SLOT(OverlayChanged(int,double,double)));
839 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
840 this, SLOT(FusionChanged(int,double)));
841 connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
842 this,SLOT(WindowsChanged(int, int, int)));
843 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
844 this,SLOT(WindowLevelChanged(double, double, int, int)));
845 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
846 this,SLOT(UpdateSlice(int,int)));
847 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
848 this,SLOT(UpdateTSlice(int, int)));
849 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
850 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
851 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
852 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
853 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)),
854 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*)));
855 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
856 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
857 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
859 numberofsuccesulreads++;
862 if (numberofsuccesulreads) {
863 NOViewWidget->show();
864 NEViewWidget->show();
865 SOViewWidget->show();
866 SEViewWidget->show();
871 // Try to guess default WindowLevel
873 mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
876 if ((range[0] == 0) && (range[1] == 1)) {
877 presetComboBox->setCurrentIndex(5);// binary
882 QApplication::restoreOverrideCursor();
884 //------------------------------------------------------------------------------
886 //------------------------------------------------------------------------------
887 void vvMainWindow::UpdateTree()
889 DataTree->resizeColumnToContents(COLUMN_TREE);
890 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
891 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
892 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
893 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
894 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
895 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
896 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
898 //------------------------------------------------------------------------------
900 //------------------------------------------------------------------------------
901 void vvMainWindow::CurrentImageChanged(std::string id)
903 // DD("CurrentImageChanged");
905 // DD(mCurrentSelectedImageId);
906 if (id == mCurrentSelectedImageId) return; // Do nothing
908 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
909 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
912 DataTree->topLevelItem(i)->setSelected(0);
914 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
915 DataTree->topLevelItem(i)->child(child)->setSelected(0);
918 DataTree->topLevelItem(selected)->setSelected(1);
919 // DD(mSlicerManagers[selected]->GetFileName());
920 mCurrentSelectedImageId = id;
921 emit SelectedImageHasChanged(mSlicerManagers[selected]);
923 //------------------------------------------------------------------------------
925 //------------------------------------------------------------------------------
926 void vvMainWindow::ImageInfoChanged()
928 contextActions[7]->setEnabled(1);
929 contextActions[6]->setEnabled(1);
930 actionSave_As->setEnabled(1);
931 actionAdd_VF_to_current_Image->setEnabled(1);
932 actionAdd_fusion_image->setEnabled(1);
933 actionNorth_East_Window->setEnabled(1);
934 actionNorth_West_Window->setEnabled(1);
935 actionSouth_East_Window->setEnabled(1);
936 actionSouth_West_Window->setEnabled(1);
937 inverseButton->setEnabled(1);
939 goToCursorPushButton->setEnabled(1);
941 if (DataTree->selectedItems().size()) {
942 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
944 colorMapComboBox->setEnabled(1);
945 for (int i = 0; i < DataTree->topLevelItem(index)->childCount(); i++) {
946 if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
947 DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion") {
948 colorMapComboBox->setEnabled(0);
953 std::vector<double> origin;
954 std::vector<double> inputSpacing;
955 std::vector<int> inputSize;
956 std::vector<double> sizeMM;
959 QString inputSizeInBytes;
960 QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
962 if (mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size() > 1 || playMode == 1) {
963 playButton->setEnabled(1);
964 frameRateLabel->setEnabled(1);
965 frameRateSpinBox->setEnabled(1);
967 playButton->setEnabled(0);
968 frameRateLabel->setEnabled(0);
969 frameRateSpinBox->setEnabled(0);
975 if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
976 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
977 dimension = imageSelected->GetNumberOfDimensions();
978 origin.resize(dimension);
979 inputSpacing.resize(dimension);
980 inputSize.resize(dimension);
981 sizeMM.resize(dimension);
982 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
983 for (int i = 0; i < dimension; i++) {
984 origin[i] = imageSelected->GetOrigin()[i];
985 inputSpacing[i] = imageSelected->GetSpacing()[i];
986 inputSize[i] = imageSelected->GetSize()[i];
987 sizeMM[i] = inputSize[i]*inputSpacing[i];
988 NPixel *= inputSize[i];
990 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
991 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
992 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
993 dimension = imageSelected->GetNumberOfDimensions();
994 origin.resize(dimension);
995 inputSpacing.resize(dimension);
996 inputSize.resize(dimension);
997 sizeMM.resize(dimension);
998 pixelType = mSlicerManagers[index]->GetVF()->GetScalarTypeAsITKString().c_str();
999 for (int i = 0; i < dimension; i++) {
1000 origin[i] = imageSelected->GetOrigin()[i];
1001 inputSpacing[i] = imageSelected->GetSpacing()[i];
1002 inputSize[i] = imageSelected->GetSize()[i];
1003 sizeMM[i] = inputSize[i]*inputSpacing[i];
1004 NPixel *= inputSize[i];
1006 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1007 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
1008 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
1009 dimension = imageSelected->GetNumberOfDimensions();
1010 origin.resize(dimension);
1011 inputSpacing.resize(dimension);
1012 inputSize.resize(dimension);
1013 sizeMM.resize(dimension);
1014 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1015 for (int i = 0; i < dimension; i++) {
1016 origin[i] = imageSelected->GetOrigin()[i];
1017 inputSpacing[i] = imageSelected->GetSpacing()[i];
1018 inputSize[i] = imageSelected->GetSize()[i];
1019 sizeMM[i] = inputSize[i]*inputSpacing[i];
1020 NPixel *= inputSize[i];
1022 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1023 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
1024 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
1025 dimension = imageSelected->GetNumberOfDimensions();
1026 origin.resize(dimension);
1027 inputSpacing.resize(dimension);
1028 inputSize.resize(dimension);
1029 sizeMM.resize(dimension);
1030 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1031 for (int i = 0; i < dimension; i++) {
1032 origin[i] = imageSelected->GetOrigin()[i];
1033 inputSpacing[i] = imageSelected->GetSpacing()[i];
1034 inputSize[i] = imageSelected->GetSize()[i];
1035 sizeMM[i] = inputSize[i]*inputSpacing[i];
1036 NPixel *= inputSize[i];
1038 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1041 QString dim = QString::number(dimension) + " (";
1042 dim += pixelType + ")";
1044 infoPanel->setFileName(image);
1045 infoPanel->setDimension(dim);
1046 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1047 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1048 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1049 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1050 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1052 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1053 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1054 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1055 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1057 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1058 for (int i = 0; i < 4; i++) {
1059 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1060 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1064 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1065 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1066 // DD(mSlicerManagers[index]->GetColorMap());
1067 // DD(mSlicerManagers[index]->GetPreset());
1068 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1069 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1071 infoPanel->setFileName(image);
1072 infoPanel->setDimension(dim);
1073 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1074 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1075 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1076 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1077 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1079 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1080 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1081 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1082 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1084 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1085 for (int i = 0; i < 4; i++) {
1086 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1087 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1091 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1092 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1093 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1094 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1096 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
1097 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1098 overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
1099 mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
1100 mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
1102 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1103 overlayPanel->getVFProperty(-1,-1,-1);
1105 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
1106 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1107 overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor());
1109 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1110 overlayPanel->getOverlayProperty(-1);
1112 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
1113 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1114 overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
1115 mSlicerManagers[index]->GetFusionColorMap(),
1116 mSlicerManagers[index]->GetFusionWindow(),
1117 mSlicerManagers[index]->GetFusionLevel());
1119 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1120 overlayPanel->getFusionProperty(-1, -1,-1,-1);
1124 //------------------------------------------------------------------------------
1126 //------------------------------------------------------------------------------
1127 void vvMainWindow::ShowDocumentation()
1129 documentation->show();
1131 //------------------------------------------------------------------------------
1132 void vvMainWindow::ShowHelpDialog()
1134 help_dialog->show();
1136 //------------------------------------------------------------------------------
1138 //------------------------------------------------------------------------------
1139 void vvMainWindow::ChangeViewMode()
1141 QListIterator<int> it0(splitter_3->sizes());
1142 QListIterator<int> it1(splitter_3->sizes());
1145 while (it0.hasNext()) {
1148 while (it1.hasNext()) {
1153 if (viewMode == 1) {
1155 size0.push_back(max0);
1157 size1.push_back(max1);
1159 splitter_3->setSizes(size0);
1160 OSplitter->setSizes(size1);
1161 DataTree->setColumnHidden(2,1);
1162 DataTree->setColumnHidden(3,1);
1163 DataTree->setColumnHidden(4,1);
1166 size0.push_back(int(max0/2));
1167 size0.push_back(int(max0/2));
1168 size1.push_back(int(max1/2));
1169 size1.push_back(int(max1/2));
1170 splitter_3->setSizes(size0);
1171 OSplitter->setSizes(size1);
1172 DataTree->setColumnHidden(2,0);
1173 DataTree->setColumnHidden(3,0);
1174 DataTree->setColumnHidden(4,0);
1177 //------------------------------------------------------------------------------
1179 //------------------------------------------------------------------------------
1180 QString vvMainWindow::GetSizeInBytes(unsigned long size)
1182 QString result = "";// QString::number(size);
1183 //result += " bytes (";
1184 if (size > 1000000000) {
1186 result += QString::number(size);
1187 result += "Gb";//)";
1188 } else if (size > 1000000) {
1190 result += QString::number(size);
1191 result += "Mb";//)";
1192 } else if (size > 1000) {
1194 result += QString::number(size);
1195 result += "kb";//)";
1199 //------------------------------------------------------------------------------
1201 //------------------------------------------------------------------------------
1202 QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble)
1205 for (unsigned int i= 0; i < vectorDouble.size(); i++) {
1208 result += QString::number(vectorDouble[i]);
1212 //------------------------------------------------------------------------------
1214 //------------------------------------------------------------------------------
1215 QString vvMainWindow::GetVectorIntAsString(std::vector<int> vectorInt)
1218 for (unsigned int i= 0; i < vectorInt.size(); i++) {
1221 result += QString::number(vectorInt[i]);
1225 //------------------------------------------------------------------------------
1227 //------------------------------------------------------------------------------
1228 int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item)
1230 QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1231 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1232 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1237 //------------------------------------------------------------------------------
1239 //------------------------------------------------------------------------------
1240 QTreeWidgetItem* vvMainWindow::GetItemFromSlicerManager(vvSlicerManager* sm)
1242 QString id = sm->GetId().c_str();
1243 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1244 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1245 return DataTree->topLevelItem(i);
1249 //------------------------------------------------------------------------------
1251 //------------------------------------------------------------------------------
1252 void vvMainWindow::DisplayChanged(QTreeWidgetItem *clicked_item, int column)
1254 int index = GetSlicerIndexFromItem(clicked_item);
1255 if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
1257 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1258 //Trick to avoid redoing twice the job for a key (sr)
1259 mSlicerManagers[i]->GetSlicer(column-1)->GetRenderWindow()-> GetInteractor()->SetKeySym("Crap");
1261 QTreeWidgetItem* current_row=DataTree->topLevelItem(i);
1262 if (DataTree->topLevelItem(index) == current_row) {
1263 vvSlicer* clicked_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1264 if (current_row == clicked_item) {
1265 //If we just activated a slicer
1266 if (current_row->data(column,Qt::CheckStateRole).toInt() > 0) {
1267 mSlicerManagers[i]->UpdateSlicer(column-1,clicked_item->data(column,Qt::CheckStateRole).toInt());
1268 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1269 DisplaySliders(i,column-1);
1270 std::map<std::string,int> overlay_counts;
1271 for (int child = 0; child < current_row->childCount(); child++) {
1272 std::string overlay_type =
1273 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1274 overlay_counts[overlay_type]++;
1275 current_row->child(child)->setData(column,Qt::CheckStateRole,
1276 current_row->data(column,Qt::CheckStateRole));
1277 clicked_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,true);
1279 } else { //We don't allow simply desactivating a slicer
1280 clicked_item->setData(column,Qt::CheckStateRole,2);
1284 //if we clicked on the vector(or overlay) and not the image
1286 if (clicked_item->data(column,Qt::CheckStateRole).toInt()) {
1287 current_row->setData(column,Qt::CheckStateRole,2);
1288 mSlicerManagers[i]->UpdateSlicer(column-1,2);
1289 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1290 DisplaySliders(i,column-1);
1292 int vis = clicked_item->data(column,Qt::CheckStateRole).toInt();
1293 std::string overlay_type = clicked_item->data(1,Qt::UserRole).toString().toStdString();
1294 int overlay_index=0;
1295 for (int child = 0; child < current_row->childCount(); child++) {
1296 if (current_row->child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1298 if (current_row->child(child) == clicked_item) break;
1300 clicked_slicer->SetActorVisibility(
1301 clicked_item->data(1,Qt::UserRole).toString().toStdString(), overlay_index-1,vis);
1303 } else if (current_row->data(column,Qt::CheckStateRole).toInt() > 0) {
1304 current_row->setData(column,Qt::CheckStateRole,0);
1305 mSlicerManagers[i]->UpdateSlicer(column-1,0);
1306 std::map<std::string,int> overlay_counts;
1307 for (int child = 0; child < current_row->childCount(); child++) {
1308 std::string overlay_type =
1309 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1310 overlay_counts[overlay_type]++;
1311 current_row->child(child)->setData(column,Qt::CheckStateRole,0);
1312 vvSlicer * current_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1313 current_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,false);
1316 //mSlicerManagers[i]->SetColorMap(-1);
1317 mSlicerManagers[i]->SetColorMap();
1319 mSlicerManagers[index]->GetSlicer(column-1)->Render();
1321 //------------------------------------------------------------------------------
1323 void vvMainWindow::InitSlicers()
1325 if (mSlicerManagers.size()) {
1326 mSlicerManagers.back()->GenerateDefaultLookupTable();
1328 mSlicerManagers.back()->SetSlicerWindow(0,NOViewWidget->GetRenderWindow());
1329 mSlicerManagers.back()->SetSlicerWindow(1,NEViewWidget->GetRenderWindow());
1330 mSlicerManagers.back()->SetSlicerWindow(2,SOViewWidget->GetRenderWindow());
1331 mSlicerManagers.back()->SetSlicerWindow(3,SEViewWidget->GetRenderWindow());
1335 //------------------------------------------------------------------------------
1336 void vvMainWindow::InitDisplay()
1338 if (mSlicerManagers.size()) {
1339 //BE CAREFUL : this is absolutely necessary to set the interactor style
1340 //in order to have the same style instanciation for all SlicerManagers in
1342 for (int j = 0; j < 4; j++) {
1343 vvInteractorStyleNavigator* style = vvInteractorStyleNavigator::New();
1344 style->SetAutoAdjustCameraClippingRange(1);
1345 bool AlreadySelected = false;
1346 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1347 mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
1349 //select the image only if previous are not selected
1350 if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1) {
1351 mSlicerManagers[i]->UpdateSlicer(j,1);
1352 AlreadySelected = true;
1353 } else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected) {
1354 if (DataTree->selectedItems().size() == 0)
1355 DataTree->topLevelItem(i)->setSelected(1);
1356 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
1357 mSlicerManagers[i]->UpdateSlicer(j,1);
1358 DisplaySliders(i,j);
1360 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,0);
1361 mSlicerManagers[i]->UpdateSlicer(j,0);
1368 //------------------------------------------------------------------------------
1370 //------------------------------------------------------------------------------
1371 void vvMainWindow::DisplaySliders(int slicer, int window)
1374 mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
1375 int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
1379 tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
1380 int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetTSlice();
1381 bool showHorizontal = false;
1382 bool showVertical = false;
1383 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1384 || (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 2
1385 && mSlicerManagers[slicer]->GetType() != IMAGEWITHTIME
1386 && mSlicerManagers[slicer]->GetType() != MERGEDWITHTIME))
1387 showVertical = true;
1388 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1389 || mSlicerManagers[slicer]->GetType() == IMAGEWITHTIME
1390 || mSlicerManagers[slicer]->GetType() == MERGEDWITHTIME)
1391 showHorizontal = true;
1394 verticalSliders[window]->show();
1396 verticalSliders[window]->hide();
1397 verticalSliders[window]->setRange(range[0],range[1]);
1398 verticalSliders[window]->setValue(position);
1401 horizontalSliders[window]->show();
1403 horizontalSliders[window]->hide();
1404 horizontalSliders[window]->setRange(tRange[0],tRange[1]);
1405 horizontalSliders[window]->setValue(tPosition);
1407 //------------------------------------------------------------------------------
1409 //------------------------------------------------------------------------------
1410 void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column)
1412 int index = GetSlicerIndexFromItem(item);
1414 if (DataTree->topLevelItem(index) != item) {
1415 QString warning = "Do you really want to close the overlay : ";
1416 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1417 QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
1419 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1420 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1421 if (msgBox.exec() == QMessageBox::AcceptRole) {
1422 std::string overlay_type=item->data(1,Qt::UserRole).toString().toStdString();
1423 int overlay_index=0;
1424 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++) {
1425 if (DataTree->topLevelItem(index)->\
1426 child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1428 if (DataTree->topLevelItem(index)->child(child) == item) break;
1430 mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
1431 mSlicerManagers[index]->SetColorMap(0);
1432 DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
1433 mSlicerManagers[index]->Render();
1435 } else if (DataTree->topLevelItemCount() <= 1) {
1436 QString warning = "Do you really want to close the image : ";
1437 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1438 warning += "\nThis is the last image, you're about to close vv !!!";
1439 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1441 msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
1442 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1443 if (msgBox.exec() == QMessageBox::AcceptRole) {
1447 QString warning = "Do you really want to close the image : ";
1448 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1449 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1451 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1452 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1453 if (msgBox.exec() == QMessageBox::AcceptRole) {
1455 // Tell tools that we close an image
1456 emit AnImageIsBeingClosed(mSlicerManagers[index]);
1458 std::vector<vvSlicerManager*>::iterator Manageriter = mSlicerManagers.begin();
1459 DataTree->takeTopLevelItem(index);
1460 for (int i = 0; i < index; i++) {
1463 linkPanel->removeImage(index);
1464 mSlicerManagers[index]->RemoveActors();
1465 delete mSlicerManagers[index];
1466 mSlicerManagers.erase(Manageriter);
1473 //------------------------------------------------------------------------------
1475 //------------------------------------------------------------------------------
1476 void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column)
1478 // int index = GetSlicerIndexFromItem(item);
1479 // QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1480 // if (item->data(1,Qt::UserRole).toString() == "vector")
1481 // mSlicerManagers[index]->ReloadVF();
1483 // mSlicerManagers[index]->Reload();
1485 // QApplication::restoreOverrideCursor();
1486 int index = GetSlicerIndexFromItem(item);
1487 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1488 QString role=item->data(1,Qt::UserRole).toString();
1489 if ( role == "vector")
1490 mSlicerManagers[index]->ReloadVF();
1491 else if (role == "overlay")
1492 mSlicerManagers[index]->ReloadOverlay();
1493 else if (role == "fusion")
1494 mSlicerManagers[index]->ReloadFusion();
1496 mSlicerManagers[index]->Reload();
1498 // Update view and info
1500 mSlicerManagers[index]->Render();
1501 QApplication::restoreOverrideCursor();
1503 //------------------------------------------------------------------------------
1505 // void vvMainWindow::CropImage()
1507 // int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1508 // vvCropDialog crop(mSlicerManagers,index);
1510 // AddImage(crop.GetOutput(),"cropped.mhd");
1513 //------------------------------------------------------------------------------
1514 void vvMainWindow::SplitImage()
1516 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1517 int dim = mSlicerManagers[index]->GetDimension();
1518 QString warning = "Do you really want to split the ";
1519 warning += QString::number(dim) + "D image ";
1520 warning += DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString() + " into ";
1521 warning += QString::number(mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetSize()[dim-1]) + " ";
1522 warning += QString::number(dim-1) + "D images.";
1523 QMessageBox msgBox(QMessageBox::Warning, tr("Split Image"),
1525 msgBox.addButton(tr("Split"), QMessageBox::AcceptRole);
1526 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1527 if (msgBox.exec() == QMessageBox::AcceptRole) {
1528 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1530 std::string filename = DataTree->selectedItems()[0]->data(0,Qt::UserRole).toString().toStdString();
1531 int numberOfSlice = mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetSize()[dim-1];
1532 std::string path = itksys::SystemTools::GetFilenamePath(
1535 path += DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString().toStdString();
1537 path += itksys::SystemTools::GetFilenameLastExtension(
1540 typedef itk::NumericSeriesFileNames NameGeneratorType;
1541 NameGeneratorType::Pointer nameGenerator = NameGeneratorType::New();
1542 nameGenerator->SetSeriesFormat(path.c_str());
1543 nameGenerator->SetStartIndex(0);
1544 nameGenerator->SetEndIndex(numberOfSlice-1);
1545 nameGenerator->SetIncrementIndex(1);
1547 for (int i = 0; i < numberOfSlice; i++) {
1548 vvSlicerManager* imageManager = new vvSlicerManager(4);
1549 imageManager->SetExtractedImage(nameGenerator->GetFileNames()[i],
1550 mSlicerManagers[index]->GetSlicer(0)->GetImage(), i);
1551 mSlicerManagers.push_back(imageManager);
1553 //create an item in the tree with good settings
1554 QTreeWidgetItem *item = new QTreeWidgetItem();
1555 item->setData(0,Qt::UserRole,nameGenerator->GetFileNames()[i].c_str());
1556 std::string fileI = itksys::SystemTools::GetFilenameWithoutLastExtension(
1557 nameGenerator->GetFileNames()[i]).c_str();
1558 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileI.c_str());
1559 for (int j = 1; j <= 4; j++) {
1560 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1561 DataTree->topLevelItem(i)->setData(j,Qt::CheckStateRole,0);
1563 item->setData(j,Qt::CheckStateRole,2);
1566 //Create the buttons for reload and close
1567 QTreePushButton* cButton = new QTreePushButton;
1568 cButton->setItem(item);
1569 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1570 cButton->setToolTip(tr("close image"));
1571 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1572 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1573 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1575 QTreePushButton* rButton = new QTreePushButton;
1576 rButton->setItem(item);
1577 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1578 rButton->setToolTip(tr("reload image"));
1579 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1580 rButton->setEnabled(false);
1581 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1582 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1584 DataTree->addTopLevelItem(item);
1585 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1586 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1588 //set the id of the image
1589 QString id = nameGenerator->GetFileNames()[i].c_str() + QString::number(mSlicerManagers.size()-1);
1590 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1591 mSlicerManagers.back()->SetId(id.toStdString());
1592 linkPanel->addImage(fileI, id.toStdString());
1593 connect(mSlicerManagers.back(),SIGNAL(currentImageChanged(std::string)),
1594 this,SLOT(CurrentImageChanged(std::string)));
1595 connect(mSlicerManagers.back(),SIGNAL(
1596 UpdatePosition(int, double, double, double, double, double, double, double)),this,
1597 SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
1598 connect(mSlicerManagers.back(),SIGNAL(UpdateVector(int, double, double, double, double)),
1599 this, SLOT(VectorChanged(int,double,double,double, double)));
1600 connect(mSlicerManagers.back(),SIGNAL(UpdateOverlay(int, double, double)),
1601 this, SLOT(OverlayChanged(int,double,double)));
1602 connect(mSlicerManagers.back(),SIGNAL(UpdateFusion(int, double)),
1603 this, SLOT(FusionChanged(int,double)));
1604 connect(mSlicerManagers.back(),SIGNAL(UpdateWindows(int, int, int)),
1605 this,SLOT(WindowsChanged(int, int, int)));
1606 connect(mSlicerManagers.back(),SIGNAL(WindowLevelChanged(double, double,int, int)),
1607 this,SLOT(WindowLevelChanged(double, double, int, int)));
1608 connect(mSlicerManagers.back(),SIGNAL(UpdateSlice(int,int)),
1609 this,SLOT(UpdateSlice(int,int)));
1610 connect(mSlicerManagers.back(),SIGNAL(UpdateTSlice(int, int)),
1611 this,SLOT(UpdateTSlice(int, int)));
1612 connect(mSlicerManagers.back(),SIGNAL(UpdateSliceRange(int,int,int,int,int)),
1613 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
1614 connect(mSlicerManagers.back(),SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
1615 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
1616 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)),
1617 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*)));
1618 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
1620 qApp->processEvents();
1623 qApp->processEvents();
1625 QApplication::restoreOverrideCursor();
1627 QApplication::restoreOverrideCursor();
1628 QString error = "Cannot split file (dimensions must be greater than 2) ";
1629 QMessageBox::information(this,tr("Splitting problem"),error);
1633 //------------------------------------------------------------------------------
1635 //------------------------------------------------------------------------------
1636 void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value)
1638 infoPanel->setCurrentInfo(visibility,x,y,z,X,Y,Z,value);
1640 //------------------------------------------------------------------------------
1642 //------------------------------------------------------------------------------
1643 void vvMainWindow::VectorChanged(int visibility,double x, double y, double z, double value)
1645 overlayPanel->getCurrentVectorInfo(visibility,x,y,z,value);
1647 //------------------------------------------------------------------------------
1649 //------------------------------------------------------------------------------
1650 void vvMainWindow::OverlayChanged(int visibility, double valueOver, double valueRef)
1652 overlayPanel->getCurrentOverlayInfo(visibility,valueOver, valueRef);
1654 //------------------------------------------------------------------------------
1656 //------------------------------------------------------------------------------
1657 void vvMainWindow::FusionChanged(int visibility, double value)
1659 overlayPanel->getCurrentFusionInfo(visibility,value);
1661 //------------------------------------------------------------------------------
1663 //------------------------------------------------------------------------------
1664 void vvMainWindow::WindowsChanged(int window, int view, int slice)
1666 infoPanel->setViews(window, view, slice);
1668 //------------------------------------------------------------------------------
1670 //------------------------------------------------------------------------------
1671 void vvMainWindow::WindowLevelChanged(double window, double level,int preset,int colormap)
1673 windowSpinBox->setValue(window);
1674 levelSpinBox->setValue(level);
1675 colorMapComboBox->setCurrentIndex(colormap);
1676 presetComboBox->setCurrentIndex(preset);
1678 //------------------------------------------------------------------------------
1680 //------------------------------------------------------------------------------
1681 void vvMainWindow::WindowLevelEdited()
1683 presetComboBox->setCurrentIndex(6);
1684 UpdateWindowLevel();
1686 //------------------------------------------------------------------------------
1688 //------------------------------------------------------------------------------
1689 void vvMainWindow::UpdateWindowLevel()
1691 if (DataTree->selectedItems().size()) {
1692 if (presetComboBox->currentIndex() == 7) //For ventilation
1693 colorMapComboBox->setCurrentIndex(5);
1694 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1695 mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
1696 mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
1697 mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
1698 mSlicerManagers[index]->Render();
1701 //------------------------------------------------------------------------------
1703 //------------------------------------------------------------------------------
1704 void vvMainWindow::UpdateColorMap()
1706 if (DataTree->selectedItems().size()) {
1707 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1708 mSlicerManagers[index]->SetColorMap(colorMapComboBox->currentIndex());
1709 mSlicerManagers[index]->Render();
1712 //------------------------------------------------------------------------------
1713 void vvMainWindow::SwitchWindowLevel()
1715 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1716 int window = mSlicerManagers[index]->GetColorWindow();
1717 presetComboBox->setCurrentIndex(6);
1718 windowSpinBox->setValue(-window);
1719 UpdateWindowLevel();
1721 //------------------------------------------------------------------------------
1723 //------------------------------------------------------------------------------
1724 void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
1726 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1727 if (mSlicerManagers[i]->GetId() == id) {
1728 //mSlicerManagers[i]->SetTSlice(temps);
1729 mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
1730 mSlicerManagers[i]->UpdateViews(0,slicer);
1735 //------------------------------------------------------------------------------
1737 //------------------------------------------------------------------------------
1738 void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm)
1740 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1741 if (id == mSlicerManagers[i]->GetId()) {
1742 mSlicerManagers[i]->UpdateLinkedNavigation(sm->GetSlicer(0));
1746 //------------------------------------------------------------------------------
1748 //------------------------------------------------------------------------------
1749 void vvMainWindow::ShowContextMenu(QPoint point)
1751 if (!DataTree->selectedItems().size()) {
1752 contextActions[1]->setEnabled(0);
1753 contextActions[2]->setEnabled(0);
1754 contextActions[3]->setEnabled(0);
1755 contextActions[4]->setEnabled(0);
1756 contextActions[5]->setEnabled(0);
1757 contextActions[6]->setEnabled(0);
1758 contextActions[7]->setEnabled(0);
1760 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1761 contextActions[1]->setEnabled(1);
1762 contextActions[2]->setEnabled(
1763 DataTree->itemWidget(DataTree->selectedItems()[0],
1764 COLUMN_RELOAD_IMAGE)->isEnabled());
1765 contextActions[3]->setEnabled(1);
1766 contextActions[5]->setEnabled(1);
1767 contextActions[6]->setEnabled(1);
1768 contextActions[7]->setEnabled(1);
1770 if (mSlicerManagers[index]->GetDimension() < 3)
1771 contextActions[4]->setEnabled(0);
1773 contextActions[4]->setEnabled(1);
1775 contextMenu.exec(QCursor::pos());
1777 //------------------------------------------------------------------------------
1779 //------------------------------------------------------------------------------
1780 void vvMainWindow::CloseImage()
1782 CloseImage(DataTree->selectedItems()[0],0);
1784 //------------------------------------------------------------------------------
1786 //------------------------------------------------------------------------------
1787 void vvMainWindow::ReloadImage()
1789 ReloadImage(DataTree->selectedItems()[0],0);
1791 //------------------------------------------------------------------------------
1793 //------------------------------------------------------------------------------
1794 void vvMainWindow::SelectOverlayImage()
1796 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1798 //check if one overlay image is added
1799 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1800 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay") {
1801 QString error = "Cannot add more than one compared image\n";
1802 error += "Please remove first ";
1803 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1804 QMessageBox::information(this,tr("Problem adding compared image !"),error);
1808 QString Extensions = EXTENSIONS;
1809 Extensions += ";;All Files (*)";
1810 QString file = QFileDialog::getOpenFileName(this,tr("Load Overlay image"),mInputPathName,Extensions);
1811 if (!file.isEmpty())
1812 AddOverlayImage(index,file);
1814 //------------------------------------------------------------------------------
1816 //------------------------------------------------------------------------------
1817 void vvMainWindow::AddOverlayImage(int index, QString file)
1820 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1821 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1822 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1823 reader->SetFileName(file.toStdString().c_str());
1824 reader->ReadImageInformation();
1825 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1826 int dimension = reader->GetNumberOfDimensions();
1827 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1828 vvProgressDialog progress("Opening " + file.toStdString());
1829 qApp->processEvents();
1831 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1832 if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component)) {
1833 //create an item in the tree with good settings
1834 QTreeWidgetItem *item = new QTreeWidgetItem();
1835 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1836 item->setData(1,Qt::UserRole,tr("overlay"));
1837 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
1838 qApp->processEvents();
1840 for (int j = 1; j <= 4; j++) {
1841 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1842 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("overlay",0,
1843 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1846 //Create the buttons for reload and close
1847 qApp->processEvents();
1848 QTreePushButton* cButton = new QTreePushButton;
1849 cButton->setItem(item);
1850 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1851 cButton->setToolTip(tr("close image"));
1852 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1853 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1854 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1856 QTreePushButton* rButton = new QTreePushButton;
1857 rButton->setItem(item);
1858 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1859 rButton->setToolTip(tr("reload image"));
1860 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1861 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1862 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1864 DataTree->topLevelItem(index)->setExpanded(1);
1865 DataTree->topLevelItem(index)->addChild(item);
1866 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1867 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1869 //set the id of the image
1870 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1871 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1873 qApp->processEvents();
1875 QApplication::restoreOverrideCursor();
1877 QApplication::restoreOverrideCursor();
1878 QString error = "Cannot import the new image.\n";
1879 error += mSlicerManagers[index]->GetLastError().c_str();
1880 QMessageBox::information(this,tr("Problem reading image !"),error);
1883 //------------------------------------------------------------------------------
1886 //------------------------------------------------------------------------------
1887 void vvMainWindow::AddROI(int index, QString file)
1889 DD("AddImageAndROI");
1891 // Get slice manager
1895 vvImageReader * mReader = new vvImageReader;
1896 mReader->SetInputFilename(filename.toStdString());
1897 mReader->Update(IMAGE);
1898 if (mReader->GetLastError().size() != 0) {
1899 std::cerr << "Error while reading " << filename.toStdString() << std::endl;
1900 QString error = "Cannot open file \n";
1901 error += mReader->GetLastError().c_str();
1902 QMessageBox::information(this,tr("Reading problem"),error);
1906 vvImage::Pointer roi = mReader->GetOutput();
1908 // Create roi in new tool
1909 vvToolStructureSetManager::AddImage(mCurrentSlicerManager, roi);
1912 //------------------------------------------------------------------------------
1914 //------------------------------------------------------------------------------
1915 void vvMainWindow::AddFusionImage()
1917 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1919 //check if one fusion image is added
1920 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1921 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") {
1922 QString error = "Cannot add more than one fusion image\n";
1923 error += "Please remove first ";
1924 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1925 QMessageBox::information(this,tr("Problem adding fusion image !"),error);
1929 QString Extensions = EXTENSIONS;
1930 Extensions += ";;All Files (*)";
1931 QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
1932 if (!file.isEmpty()) {
1933 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1934 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1935 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1936 reader->SetFileName(file.toStdString().c_str());
1937 reader->ReadImageInformation();
1938 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1940 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1941 vvProgressDialog progress("Opening fusion");
1942 qApp->processEvents();
1944 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1945 if (mSlicerManagers[index]->SetFusion(file.toStdString(),
1946 reader->GetNumberOfDimensions(), component)) {
1947 //create an item in the tree with good settings
1948 QTreeWidgetItem *item = new QTreeWidgetItem();
1949 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1950 item->setData(1,Qt::UserRole,tr("fusion"));
1951 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
1952 qApp->processEvents();
1954 for (int j = 1; j <= 4; j++) {
1955 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1956 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0,
1957 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1960 //Create the buttons for reload and close
1961 qApp->processEvents();
1962 QTreePushButton* cButton = new QTreePushButton;
1963 cButton->setItem(item);
1964 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1965 cButton->setToolTip(tr("close image"));
1966 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1967 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1968 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1970 QTreePushButton* rButton = new QTreePushButton;
1971 rButton->setItem(item);
1972 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1973 rButton->setToolTip(tr("reload image"));
1974 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1975 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1976 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1978 DataTree->topLevelItem(index)->setExpanded(1);
1979 DataTree->topLevelItem(index)->addChild(item);
1980 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1981 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1983 //set the id of the image
1984 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1985 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1987 qApp->processEvents();
1989 QApplication::restoreOverrideCursor();
1991 QApplication::restoreOverrideCursor();
1992 QString error = "Cannot import the new image.\n";
1993 error += mSlicerManagers[index]->GetLastError().c_str();
1994 QMessageBox::information(this,tr("Problem reading image !"),error);
1997 QString error = "Cannot import the new image.\n";
1998 QMessageBox::information(this,tr("Problem reading image !"),error);
2002 //------------------------------------------------------------------------------
2005 //------------------------------------------------------------------------------
2006 void vvMainWindow::OpenField()
2008 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2009 //check if a vector field has already been added
2010 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
2011 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector") {
2012 QString error = "Cannot add more than one vector field\n";
2013 error += "Please remove first ";
2014 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
2015 QMessageBox::information(this,tr("Problem adding vector field!"),error);
2019 QString Extensions = "Images ( *.mhd)";
2020 Extensions += ";;Images ( *.vf)";
2021 QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
2022 if (!file.isEmpty())
2023 AddField(file,index);
2025 //------------------------------------------------------------------------------
2028 //------------------------------------------------------------------------------
2029 void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
2031 //create an item in the tree with good settings
2032 QTreeWidgetItem *item = new QTreeWidgetItem();
2033 item->setData(0,Qt::UserRole,filename.toStdString().c_str());
2034 item->setData(1,Qt::UserRole,tr("vector"));
2035 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename);
2036 qApp->processEvents();
2038 for (int j = 1; j <= 4; j++) {
2039 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2040 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("vector",0,
2041 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
2044 //Create the buttons for reload and close
2045 qApp->processEvents();
2046 QTreePushButton* cButton = new QTreePushButton;
2047 cButton->setItem(item);
2048 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2049 cButton->setToolTip(tr("close vector field"));
2050 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2051 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2052 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2054 QTreePushButton* rButton = new QTreePushButton;
2055 rButton->setItem(item);
2056 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2057 rButton->setToolTip(tr("reload vector field"));
2058 rButton->setEnabled(from_disk);
2059 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2060 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2061 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2063 DataTree->topLevelItem(index)->setExpanded(1);
2064 DataTree->topLevelItem(index)->addChild(item);
2065 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2066 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2068 //set the id of the image
2069 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2070 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2072 qApp->processEvents();
2074 QApplication::restoreOverrideCursor();
2076 //------------------------------------------------------------------------------
2079 //------------------------------------------------------------------------------
2080 void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
2082 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2083 vvSlicerManager* imageManager = mSlicerManagers[index];
2084 if (imageManager->SetVF(vf,file.toStdString())) {
2085 AddFieldEntry(file,index,false);
2087 QString error = "Cannot import the vector field for this image.\n";
2088 error += imageManager->GetLastError().c_str();
2089 QMessageBox::information(this,tr("Problem reading VF !"),error);
2091 QApplication::restoreOverrideCursor();
2093 //------------------------------------------------------------------------------
2096 //------------------------------------------------------------------------------
2097 void vvMainWindow::AddField(QString file,int index)
2099 if (QFile::exists(file)) {
2100 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2102 //init the progress events
2103 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2104 vvProgressDialog progress("Opening " + file.toStdString());
2105 qApp->processEvents();
2107 //read the vector and put it in the current mSlicerManager
2108 vvSlicerManager* imageManager = mSlicerManagers[index];
2109 qApp->processEvents();
2111 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2112 if (imageManager->SetVF(file.toStdString())) {
2113 imageManager->Render();
2114 AddFieldEntry(file,index,true);
2116 QApplication::restoreOverrideCursor();
2117 QString error = "Cannot import the vector field for this image.\n";
2118 error += imageManager->GetLastError().c_str();
2119 QMessageBox::information(this,tr("Problem reading VF !"),error);
2122 QMessageBox::information(this,tr("Problem reading VF !"),"File doesn't exist!");
2125 //------------------------------------------------------------------------------
2128 //------------------------------------------------------------------------------
2129 void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width)
2131 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2132 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
2133 for (int i = 0; i < 4; i++) {
2134 mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
2135 mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
2136 mSlicerManagers[index]->GetSlicer(i)->SetVFWidth(width);
2138 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
2140 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(0);
2144 //------------------------------------------------------------------------------
2147 //------------------------------------------------------------------------------
2148 void vvMainWindow::SetOverlayProperty(int color)
2150 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2151 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
2152 mSlicerManagers[index]->SetOverlayColor(color);
2153 mSlicerManagers[index]->SetColorMap(0);
2154 mSlicerManagers[index]->Render();
2157 //------------------------------------------------------------------------------
2159 //------------------------------------------------------------------------------
2160 void vvMainWindow::SetFusionProperty(int opacity, int colormap,double window, double level)
2162 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2163 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
2164 mSlicerManagers[index]->SetFusionOpacity(opacity);
2165 mSlicerManagers[index]->SetFusionColorMap(colormap);
2166 mSlicerManagers[index]->SetFusionWindow(window);
2167 mSlicerManagers[index]->SetFusionLevel(level);
2168 mSlicerManagers[index]->SetColorMap(0);
2169 mSlicerManagers[index]->Render();
2172 //------------------------------------------------------------------------------
2174 //------------------------------------------------------------------------------
2175 void vvMainWindow::SaveAs()
2177 if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
2178 QMessageBox::warning(this,tr("Unsupported type"),tr("Sorry, saving a vector field is unsupported for the moment"));
2182 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2183 int dimension = mSlicerManagers[index]->GetDimension();
2184 QStringList OutputListeFormat;
2185 OutputListeFormat.clear();
2186 if (dimension == 1) {
2187 OutputListeFormat.push_back(".mhd");
2189 if (dimension == 2) {
2190 OutputListeFormat.push_back(".bmp");
2191 OutputListeFormat.push_back(".png");
2192 OutputListeFormat.push_back(".jpeg");
2193 OutputListeFormat.push_back(".tif");
2194 OutputListeFormat.push_back(".mhd");
2195 OutputListeFormat.push_back(".hdr");
2196 OutputListeFormat.push_back(".vox");
2197 } else if (dimension == 3) {
2198 OutputListeFormat.push_back(".mhd");
2199 OutputListeFormat.push_back(".hdr");
2200 OutputListeFormat.push_back(".vox");
2201 } else if (dimension == 4) {
2202 OutputListeFormat.push_back(".mhd");
2204 QString Extensions = "AllFiles(*.*)";
2205 for (int i = 0; i < OutputListeFormat.count(); i++) {
2206 Extensions += ";;Images ( *";
2207 Extensions += OutputListeFormat[i];
2210 QString fileName = QFileDialog::getSaveFileName(this,
2212 mSlicerManagers[index]->GetFileName().c_str(),
2214 if (!fileName.isEmpty()) {
2215 std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
2216 if (OutputListeFormat.contains(
2217 fileformat.c_str())) {
2218 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2219 std::string action = "Saving";
2220 vvProgressDialog progress("Saving "+fileName.toStdString());
2221 qApp->processEvents();
2222 vvImageWriter *writer = new vvImageWriter;
2223 writer->SetOutputFileName(fileName.toStdString());
2224 writer->SetInput(mSlicerManagers[index]->GetImage());
2226 QApplication::restoreOverrideCursor();
2227 if (writer->GetLastError().size()) {
2228 QString error = "Saving did not succeed\n";
2229 error += writer->GetLastError().c_str();
2230 QMessageBox::information(this,tr("Saving Problem"),error);
2234 QString error = fileformat.c_str();
2235 if (error.isEmpty())
2236 error += "no file format specified !";
2238 error += " format unknown !!!\n";
2239 QMessageBox::information(this,tr("Saving Problem"),error);
2244 //------------------------------------------------------------------------------
2247 //------------------------------------------------------------------------------
2248 void vvMainWindow::AddLink(QString image1,QString image2)
2250 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2251 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2252 mSlicerManagers[i]->AddLink(image2.toStdString());
2254 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2255 mSlicerManagers[i]->AddLink(image1.toStdString());
2259 //------------------------------------------------------------------------------
2262 //------------------------------------------------------------------------------
2263 void vvMainWindow::RemoveLink(QString image1,QString image2)
2265 // DD("vvMainWindow:RemoveLink");
2266 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2267 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2268 mSlicerManagers[i]->RemoveLink(image2.toStdString());
2270 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2271 mSlicerManagers[i]->RemoveLink(image1.toStdString());
2275 //------------------------------------------------------------------------------
2277 //------------------------------------------------------------------------------
2278 void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset)
2281 while(sm != mSlicerManagers[index])
2283 index = (index+offset) % mSlicerManagers.size();
2285 QTreeWidgetItem* item = GetItemFromSlicerManager(mSlicerManagers[index]);
2286 //CurrentImageChanged(mSlicerManagers[index]->GetId()); //select new image
2287 item->setData(slicer+1,Qt::CheckStateRole,2); //change checkbox
2288 DisplayChanged(item,slicer+1);
2290 //------------------------------------------------------------------------------
2292 void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
2294 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2295 if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
2296 for (int j = 0; j < 4; j++) {
2297 mSlicerManagers[i]->SetTSliceInSlicer(value,j);
2298 //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
2299 //UpdateTSlice(j,value);
2301 mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
2306 //------------------------------------------------------------------------------
2309 //------------------------------------------------------------------------------
2310 void vvMainWindow::NOHorizontalSliderMoved()
2312 // if (mCurrentTime == NOHorizontalSlider->value()) return;
2313 HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
2314 // mCurrentTime = NOHorizontalSlider->value();
2316 //------------------------------------------------------------------------------
2319 //------------------------------------------------------------------------------
2320 void vvMainWindow::NEHorizontalSliderMoved()
2322 // if (mCurrentTime == NEHorizontalSlider->value()) return;
2323 HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
2324 // mCurrentTime = NEHorizontalSlider->value();
2326 //------------------------------------------------------------------------------
2329 //------------------------------------------------------------------------------
2330 void vvMainWindow::SOHorizontalSliderMoved()
2332 // if (mCurrentTime == SOHorizontalSlider->value()) return;
2333 HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
2334 // mCurrentTime = SOHorizontalSlider->value();
2336 //------------------------------------------------------------------------------
2339 //------------------------------------------------------------------------------
2340 void vvMainWindow::SEHorizontalSliderMoved()
2342 // if (mCurrentTime == SEHorizontalSlider->value()) return;
2343 HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
2344 // mCurrentTime = SEHorizontalSlider->value();
2346 //------------------------------------------------------------------------------
2348 //------------------------------------------------------------------------------
2349 void vvMainWindow::NOVerticalSliderChanged()
2351 static int value=-1;
2352 if (value == NOVerticalSlider->value()) return;
2353 else value = NOVerticalSlider->value();
2354 // int value = NOVerticalSlider->value();
2355 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2356 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2357 if (mSlicerManagers[i]->GetSlicer(0)->GetSlice() != value) {
2358 mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
2359 mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
2361 // If nor Update/Render -> slider not work
2362 // only render = ok navigation, but for contour Update needed but slower ?
2364 mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
2365 //mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2371 //------------------------------------------------------------------------------
2374 //------------------------------------------------------------------------------
2375 void vvMainWindow::NEVerticalSliderChanged()
2377 static int value=-1;
2378 if (value == NEVerticalSlider->value()) return;
2379 else value = NEVerticalSlider->value();
2380 // int value = NEVerticalSlider->value();
2381 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2382 if (DataTree->topLevelItem(i)->data(COLUMN_UR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2383 if (mSlicerManagers[i]->GetSlicer(1)->GetSlice() != value) {
2384 mSlicerManagers[i]->GetSlicer(1)->SetSlice(value);
2385 mSlicerManagers[i]->VerticalSliderHasChanged(1, value);
2386 mSlicerManagers[i]->UpdateSlice(1);
2387 //mSlicerManagers[i]->GetSlicer(1)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2393 //------------------------------------------------------------------------------
2396 //------------------------------------------------------------------------------
2397 void vvMainWindow::SOVerticalSliderChanged()
2399 static int value=-1;
2401 // DD(SOVerticalSlider->value());
2402 if (value == SOVerticalSlider->value()) return;
2403 else value = SOVerticalSlider->value();
2404 //int value = SOVerticalSlider->value();
2405 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2406 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2407 if (mSlicerManagers[i]->GetSlicer(2)->GetSlice() != value) {
2408 mSlicerManagers[i]->GetSlicer(2)->SetSlice(value);
2409 mSlicerManagers[i]->VerticalSliderHasChanged(2, value);
2410 mSlicerManagers[i]->UpdateSlice(2);
2411 //mSlicerManagers[i]->GetSlicer(2)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2413 // else { DD("avoid SOVerticalSlider slicer update"); }
2418 //------------------------------------------------------------------------------
2421 //------------------------------------------------------------------------------
2422 void vvMainWindow::SEVerticalSliderChanged()
2424 static int value=-1;
2425 if (value == SEVerticalSlider->value()) return;
2426 else value = SEVerticalSlider->value();
2427 // int value = SEVerticalSlider->value();
2428 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2429 if (DataTree->topLevelItem(i)->data(COLUMN_DR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2430 if (mSlicerManagers[i]->GetSlicer(3)->GetSlice() != value) {
2431 mSlicerManagers[i]->GetSlicer(3)->SetSlice(value);
2432 mSlicerManagers[i]->VerticalSliderHasChanged(3, value);
2433 mSlicerManagers[i]->UpdateSlice(3);
2434 //mSlicerManagers[i]->GetSlicer(3)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2440 //------------------------------------------------------------------------------
2443 //------------------------------------------------------------------------------
2444 void vvMainWindow::UpdateSlice(int slicer, int slice)
2446 // DD("vvMainWindow::UpdateSlice");
2450 // if (slice != NOVerticalSlider->value())
2451 NOVerticalSlider->setValue(slice);
2454 NEVerticalSlider->setValue(slice);
2457 SOVerticalSlider->setValue(slice);
2460 SEVerticalSlider->setValue(slice);
2464 // DD("vvMainWindow:UpdateSlice END");
2466 //------------------------------------------------------------------------------
2469 //------------------------------------------------------------------------------
2470 void vvMainWindow::UpdateTSlice(int slicer, int slice)
2474 NOHorizontalSlider->setValue(slice);
2477 NEHorizontalSlider->setValue(slice);
2480 SOHorizontalSlider->setValue(slice);
2483 SEHorizontalSlider->setValue(slice);
2487 //------------------------------------------------------------------------------
2490 //------------------------------------------------------------------------------
2491 void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax)
2493 int position = int((min+max)/2);
2494 int tPosition = int((tmin+tmax)/2);
2496 NOVerticalSlider->setValue(position);
2497 NOVerticalSlider->setRange(min,max);
2498 NOHorizontalSlider->setRange(tmin,tmax);
2499 NOHorizontalSlider->setValue(tPosition);
2500 } else if (slicer == 1) {
2501 NEVerticalSlider->setValue(position);
2502 NEVerticalSlider->setRange(min,max);
2503 NEHorizontalSlider->setRange(tmin,tmax);
2504 NEHorizontalSlider->setValue(tPosition);
2505 } else if (slicer == 2) {
2506 SOVerticalSlider->setValue(position);
2507 SOVerticalSlider->setRange(min,max);
2508 SOHorizontalSlider->setRange(tmin,tmax);
2509 SOHorizontalSlider->setValue(tPosition);
2510 } else if (slicer == 3) {
2511 SEVerticalSlider->setValue(position);
2512 SEVerticalSlider->setRange(min,max);
2513 SEHorizontalSlider->setRange(tmin,tmax);
2514 SEHorizontalSlider->setValue(tPosition);
2517 //------------------------------------------------------------------------------
2520 //------------------------------------------------------------------------------
2521 void vvMainWindow::SaveNOScreenshot()
2523 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2524 w2i->SetInput(NOViewWidget->GetRenderWindow());
2526 SaveScreenshot(w2i->GetOutput());
2529 //------------------------------------------------------------------------------
2532 //------------------------------------------------------------------------------
2533 void vvMainWindow::SaveNEScreenshot()
2535 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2536 w2i->SetInput(NEViewWidget->GetRenderWindow());
2538 SaveScreenshot(w2i->GetOutput());
2541 //------------------------------------------------------------------------------
2544 //------------------------------------------------------------------------------
2545 void vvMainWindow::SaveSOScreenshot()
2547 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2548 w2i->SetInput(SOViewWidget->GetRenderWindow());
2550 SaveScreenshot(w2i->GetOutput());
2553 //------------------------------------------------------------------------------
2556 //------------------------------------------------------------------------------
2557 void vvMainWindow::SaveSEScreenshot()
2559 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2560 w2i->SetInput(SEViewWidget->GetRenderWindow());
2562 SaveScreenshot(w2i->GetOutput());
2565 //------------------------------------------------------------------------------
2568 //------------------------------------------------------------------------------
2569 void vvMainWindow::SaveScreenshot(vtkImageData* image)
2571 QString Extensions = "Images( *.png);;";
2572 Extensions += "Images( *.jpg);;";
2573 Extensions += "Images( *.bmp);;";
2574 Extensions += "Images( *.tif);;";
2575 Extensions += "Images( *.ppm)";
2576 QString fileName = QFileDialog::getSaveFileName(this,
2578 itksys::SystemTools::GetFilenamePath(
2579 mSlicerManagers[0]->GetFileName()).c_str(),
2581 if (!fileName.isEmpty()) {
2582 const char *ext = fileName.toStdString().c_str() + strlen(fileName.toStdString().c_str()) - 4;
2583 if (!strcmp(ext, ".bmp")) {
2584 vtkBMPWriter *bmp = vtkBMPWriter::New();
2585 bmp->SetInput(image);
2586 bmp->SetFileName(fileName.toStdString().c_str());
2589 } else if (!strcmp(ext, ".tif")) {
2590 vtkTIFFWriter *tif = vtkTIFFWriter::New();
2591 tif->SetInput(image);
2592 tif->SetFileName(fileName.toStdString().c_str());
2595 } else if (!strcmp(ext, ".ppm")) {
2596 vtkPNMWriter *pnm = vtkPNMWriter::New();
2597 pnm->SetInput(image);
2598 pnm->SetFileName(fileName.toStdString().c_str());
2601 } else if (!strcmp(ext, ".png")) {
2602 vtkPNGWriter *png = vtkPNGWriter::New();
2603 png->SetInput(image);
2604 png->SetFileName(fileName.toStdString().c_str());
2607 } else if (!strcmp(ext, ".jpg")) {
2608 vtkJPEGWriter *jpg = vtkJPEGWriter::New();
2609 jpg->SetInput(image);
2610 jpg->SetFileName(fileName.toStdString().c_str());
2614 QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
2619 //------------------------------------------------------------------------------
2622 //------------------------------------------------------------------------------
2623 void vvMainWindow::GoToCursor()
2625 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2626 for (int column = 1; column < 5; column++) {
2627 if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1) {
2628 double* cursorPos = mSlicerManagers[index]->GetSlicer(column-1)->GetCursorPosition();
2629 mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
2630 cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
2631 mSlicerManagers[index]->UpdateViews(1,column-1);
2632 mSlicerManagers[index]->UpdateLinked(column-1);
2637 //------------------------------------------------------------------------------
2639 //------------------------------------------------------------------------------
2640 void vvMainWindow::PlayPause()
2644 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_play.png")));
2648 int image_number=DataTree->topLevelItemCount();
2650 for (int i=0; i<image_number; i++)
2651 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1) {
2657 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
2658 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2662 //------------------------------------------------------------------------------
2664 //------------------------------------------------------------------------------
2665 void vvMainWindow::PlayNext()
2667 if (playMode && !this->isHidden()) {
2668 int image_number=DataTree->topLevelItemCount();
2669 ///Only play one slicer per SM, and only if the SM is being displayed
2670 for (int i=0; i<image_number; i++)
2671 for (int j=0; j<4; j++)
2672 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1 &&
2673 DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
2674 mSlicerManagers[i]->SetNextTSlice(j);
2677 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2680 //------------------------------------------------------------------------------
2682 void vvMainWindow::ShowLastImage()
2684 if (mSlicerManagers.size() > 1) {
2685 QTreeWidgetItem * item=DataTree->topLevelItem(DataTree->topLevelItemCount()-1);
2686 CurrentImageChanged(mSlicerManagers.back()->GetId()); //select new image
2687 item->setData(1,Qt::CheckStateRole,2); //show the new image in the first panel
2688 DisplayChanged(item,1);
2692 //------------------------------------------------------------------------------
2693 void vvMainWindow::UpdateRenderWindows()
2695 if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
2696 if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
2697 if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
2698 if (SEViewWidget->GetRenderWindow()) SEViewWidget->GetRenderWindow()->Render();
2700 //------------------------------------------------------------------------------
2702 //------------------------------------------------------------------------------
2703 void vvMainWindow::SegmentationOnCurrentImage()
2705 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2707 vvSegmentationDialog segmentation;
2708 segmentation.SetImage(mSlicerManagers[index]->GetSlicer(0)->GetImage());
2709 segmentation.exec();
2711 //------------------------------------------------------------------------------
2713 void vvMainWindow::SurfaceViewerLaunch()
2715 vvSurfaceViewerDialog surfaceViewer;
2716 surfaceViewer.exec();
2719 //------------------------------------------------------------------------------
2720 vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
2722 vvSlicerManager* slicer_manager = new vvSlicerManager(4);
2723 slicer_manager->SetImage(image);
2724 slicer_manager->SetFilename(filename);
2725 mSlicerManagers.push_back(slicer_manager);
2727 //create an item in the tree with good settings
2728 QTreeWidgetItem *item = new QTreeWidgetItem();
2729 item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
2730 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
2731 qApp->processEvents();
2733 for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1);
2735 //Create the buttons for reload and close
2736 qApp->processEvents();
2737 QTreePushButton* cButton = new QTreePushButton;
2738 cButton->setItem(item);
2739 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2740 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2741 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2742 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2744 QTreePushButton* rButton = new QTreePushButton;
2745 rButton->setItem(item);
2746 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2747 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2748 rButton->setEnabled(0);
2749 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2750 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2752 DataTree->addTopLevelItem(item);
2753 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2754 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2756 //set the id of the image
2757 QString id = slicer_manager->GetFileName().c_str() + QString::number(mSlicerManagers.size()-1);
2758 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2759 mSlicerManagers.back()->SetId(id.toStdString());
2761 linkPanel->addImage(filename, id.toStdString());
2763 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
2764 this, SLOT(CurrentImageChanged(std::string)));
2765 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
2766 this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
2767 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
2768 this, SLOT(VectorChanged(int,double,double,double, double)));
2769 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
2770 this, SLOT(OverlayChanged(int,double,double)));
2771 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
2772 this, SLOT(FusionChanged(int,double)));
2773 connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
2774 this,SLOT(WindowsChanged(int, int, int)));
2775 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
2776 this,SLOT(WindowLevelChanged(double, double, int, int)));
2777 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
2778 this,SLOT(UpdateSlice(int,int)));
2779 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
2780 this,SLOT(UpdateTSlice(int, int)));
2781 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
2782 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
2783 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
2784 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
2785 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)),
2786 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*)));
2787 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
2788 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
2789 connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
2791 qApp->processEvents();
2795 qApp->processEvents();
2798 return slicer_manager;
2800 //------------------------------------------------------------------------------
2803 //------------------------------------------------------------------------------
2804 void vvMainWindow::UpdateCurrentSlicer()
2807 if (DataTree->selectedItems().size() > 0) {
2808 index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2810 mSlicerManagerCurrentIndex = index;
2812 //------------------------------------------------------------------------------