1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://www.centreleonberard.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ===========================================================================**/
20 #include <QMessageBox>
21 #include <QInputDialog>
23 #include "QTreePushButton.h"
28 #include "vvMainWindow.h"
29 #include "vvHelpDialog.h"
30 #include "vvRegisterForm.h"
31 #include "vvDocumentation.h"
32 #include "vvProgressDialog.h"
33 #include "vvQDicomSeriesSelector.h"
34 #include "vvSlicerManager.h"
35 #include "clitkImageCommon.h"
37 #include "vvInteractorStyleNavigator.h"
38 #include "vvImageWriter.h"
39 #include "vvSegmentationDialog.h"
40 #include "vvSurfaceViewerDialog.h"
41 #include "vvDeformationDialog.h"
42 #include "vvImageWarp.h"
44 #include "vvMidPosition.h"
46 #include "vvStructSelector.h"
47 #include "vvMeshReader.h"
48 #include "vvSaveState.h"
49 #include "vvReadState.h"
50 #include "clitkConfiguration.h"
54 #include <itkImageFileReader.h>
55 #include <itkByteSwapper.h>
56 #include <itkCommand.h>
57 #include <itkNumericSeriesFileNames.h>
60 #include <vtkImageData.h>
61 #include <vtkImageActor.h>
62 #include <vtkCornerAnnotation.h>
63 #include <vtkRenderWindow.h>
64 #include <vtkRenderWindowInteractor.h>
65 #include <vtkRenderer.h>
66 #include <vtkRendererCollection.h>
67 #include <vtkWindowToImageFilter.h>
68 #include <vtkBMPWriter.h>
69 #include <vtkTIFFWriter.h>
70 #include <vtkPNMWriter.h>
71 #include <vtkPNGWriter.h>
72 #include <vtkJPEGWriter.h>
73 #include <vtkGenericMovieWriter.h>
74 #ifdef CLITK_EXPERIMENTAL
75 # include <vvAnimatedGIFWriter.h>
77 #ifdef VTK_USE_VIDEO_FOR_WINDOWS
78 # include <vtkAVIWriter.h>
80 #ifdef VTK_USE_FFMPEG_ENCODER
81 # include <vtkFFMPEGWriter.h>
83 #ifdef VTK_USE_MPEG2_ENCODER
84 # include <vtkMPEG2Writer.h>
86 #include <vtkMatrix4x4.h>
87 #include <vtkTransform.h>
95 #define COLUMN_UL_VIEW 1
96 #define COLUMN_UR_VIEW 2
97 #define COLUMN_DL_VIEW 3
98 #define COLUMN_DR_VIEW 4
99 #define COLUMN_CLOSE_IMAGE 5
100 #define COLUMN_RELOAD_IMAGE 6
101 #define COLUMN_IMAGE_NAME 7
103 #ifdef CLITK_PRIVATE_FEATURES
104 #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr *.refscan *.nii.gz *.usf)"
106 #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr *.refscan *.nii.gz)"
111 0,Qt::UserRole full filename
112 1,Qt::CheckStateRole checkbutton UL View
113 1,Qt::UserRole overlay, fusion or vector
114 2,Qt::CheckStateRole checkbutton UR View
115 3,Qt::CheckStateRole checkbutton DL View
116 4,Qt::CheckStateRole checkbutton DR View
118 5,Qt::UserRole mSlicerManager id*/
120 //------------------------------------------------------------------------------
121 vvMainWindow::vvMainWindow():vvMainWindowBase()
123 setupUi(this); // this sets up the GUI
126 mMenuTools = menuTools;
127 // mMenuSegmentation = menuSegmentation;
128 mContextMenu = &contextMenu;
129 mMenuExperimentalTools = menuExperimental;
132 mCurrentSelectedImageId = "";
133 mCurrentPickedImageId = "";
134 mCurrentPickedImageIndex = 0;
136 //Init the contextMenu
137 this->setContextMenuPolicy(Qt::CustomContextMenu);
138 contextActions.resize(0);
139 QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
140 tr("O&pen new Image"));
141 actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
142 connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
143 contextActions.push_back(actionOpen_new_image);
144 contextMenu.addSeparator();
146 QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
147 tr("Close Current Image"));
148 connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
149 contextActions.push_back(actionClose_Image);
151 QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
152 tr("Reload Current Image"));
153 connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
154 contextActions.push_back(actionReload_image);
156 QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
157 tr("Save Current Image"));
158 connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
159 contextActions.push_back(actionSave_image);
161 QAction* actionSave_state = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
162 tr("Save Current State"));
163 connect(actionSave_state,SIGNAL(triggered()),this,SLOT(SaveCurrentState()));
164 contextActions.push_back(actionSave_state);
166 QAction* actionRead_state = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
167 tr("Read Saved State"));
168 connect(actionRead_state,SIGNAL(triggered()),this,SLOT(ReadSavedState()));
169 contextActions.push_back(actionRead_state);
171 contextMenu.addSeparator();
173 contextMenu.addAction(actionAdd_VF_to_current_Image);
174 contextActions.push_back(actionAdd_VF_to_current_Image);
176 //QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
177 // tr("Add overlay image to current image"));
178 contextMenu.addAction(actionAdd_overlay_image_to_current_image);
179 contextActions.push_back(actionAdd_overlay_image_to_current_image);
181 contextMenu.addAction(actionAdd_fusion_image);
182 contextActions.push_back(actionAdd_fusion_image);
184 contextMenu.addAction(actionAdd_USSequence_toCT);
185 contextActions.push_back(actionAdd_USSequence_toCT);
188 contextMenu.addSeparator();
189 QAction* actionResetMatrix = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/identity.png")),
190 tr("Reset transformation to identity"));
191 connect(actionResetMatrix, SIGNAL(triggered()), this,SLOT(ResetTransformationToIdentity()));
195 QMenu * m = new QMenu(menubar);
197 // m->setObjectName(QString::fromUtf8("TOTOTO"));
198 contextMenu.addMenu(m);
199 QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
201 QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
205 connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
209 mSlicerManagers.resize(0);
219 header.append("Name");
221 DataTree->setHeaderLabels(header);
222 DataTree->resizeColumnToContents(COLUMN_TREE);
223 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
224 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
225 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
226 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
227 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
228 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
229 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
232 documentation = new vvDocumentation();
233 help_dialog = new vvHelpDialog();
234 dicomSeriesSelector = new vvDicomSeriesSelector();
236 inverseButton->setEnabled(0);
237 actionAdd_overlay_image_to_current_image->setEnabled(0);
238 actionSave_As->setEnabled(0);
239 actionAdd_VF_to_current_Image->setEnabled(0);
240 actionAdd_fusion_image->setEnabled(0);
241 actionAdd_USSequence_toCT->setEnabled(0);
244 verticalSliders.push_back(NOVerticalSlider);
245 verticalSliders.push_back(NEVerticalSlider);
246 verticalSliders.push_back(SOVerticalSlider);
247 verticalSliders.push_back(SEVerticalSlider);
249 for (int i =0; i < 4; i++)
250 verticalSliders[i]->hide();
252 horizontalSliders.push_back(NOHorizontalSlider);
253 horizontalSliders.push_back(NEHorizontalSlider);
254 horizontalSliders.push_back(SOHorizontalSlider);
255 horizontalSliders.push_back(SEHorizontalSlider);
257 for (int i =0; i < 4; i++)
258 horizontalSliders[i]->hide();
261 connect(NOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOVerticalSliderChanged()));
262 connect(NEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEVerticalSliderChanged()));
263 connect(SOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOVerticalSliderChanged()));
264 connect(SEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEVerticalSliderChanged()));
266 connect(NOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOHorizontalSliderMoved()));
267 connect(NEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEHorizontalSliderMoved()));
268 connect(SOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOHorizontalSliderMoved()));
269 connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved()));
272 connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition()));
273 connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration()));
274 connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
275 connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
276 connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
277 connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
278 connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
279 connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
280 connect(actionSlice_Image_As_Multiple_Images,SIGNAL(triggered()),this,SLOT(SliceImages()));
281 connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
282 connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
283 connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
284 connect(actionSave_current_state,SIGNAL(triggered()),this,SLOT(SaveCurrentState()));
285 connect(actionRead_saved_state,SIGNAL(triggered()),this,SLOT(ReadSavedState()));
286 connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
287 connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
288 connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
289 connect(actionAdd_overlay_image_to_current_image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
290 connect(actionAdd_USSequence_toCT,SIGNAL(triggered()), this,SLOT(SelectFusionSequence()));
291 connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
292 connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
293 connect(actionRegister_vv,SIGNAL(triggered()),this,SLOT(PopupRegisterForm()));
295 connect(overlayPanel, SIGNAL(FusionSequenceSignalButtonPressed()), this, SLOT(SelectFusionSequenceTemporalSignal()));
298 ///////////////////////////////////////////////
299 connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
300 connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
301 ///////////////////////////////////////////////
303 actionNorth_East_Window->setEnabled(0);
304 actionNorth_West_Window->setEnabled(0);
305 actionSouth_East_Window->setEnabled(0);
306 actionSouth_West_Window->setEnabled(0);
308 connect(actionNorth_East_Window,SIGNAL(triggered()),this,SLOT(SaveNEScreenshot()));
309 connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
310 connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
311 connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
312 connect(actionSave_all_slices,SIGNAL(triggered()),this,SLOT(SaveScreenshotAllSlices()));
314 connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
315 connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
316 SLOT(DisplayChanged(QTreeWidgetItem*, int)));
318 connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
319 connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
320 connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
321 connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
322 connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
323 connect(slicingPresetComboBox, SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateSlicingPreset()));
324 connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
325 connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages()));
327 connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
329 connect(linkPanel,SIGNAL(addLink(QString,QString,bool)),this,SLOT(AddLink(QString,QString,bool)));
330 connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
331 connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double)));
332 connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int,int,double,double)),
333 this,SLOT(SetOverlayProperty(int,int,double,double)));
334 connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,int,double,double, bool)),
335 this,SLOT(SetFusionProperty(int,int,int,double,double, bool)));
336 connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
338 connect(overlayPanel,SIGNAL(FusionSequencePropertyUpdated(int, bool, unsigned int, bool)),
339 this,SLOT(SetFusionSequenceProperty(int, bool,unsigned int, bool)));
344 playButton->setEnabled(0);
345 frameRateLabel->setEnabled(0);
346 frameRateSpinBox->setEnabled(0);
347 connect(playButton, SIGNAL(clicked()),this,SLOT(PlayPause()));
348 connect(frameRateSpinBox, SIGNAL(valueChanged(int)),this,SLOT(ChangeFrameRate(int)));
350 goToCursorPushButton->setEnabled(0);
351 connect(goToCursorPushButton, SIGNAL(clicked()),this,SLOT(GoToCursor()));
353 NOViewWidget->hide();
354 NEViewWidget->hide();
355 SOViewWidget->hide();
356 SEViewWidget->hide();
358 //Recently opened files
359 std::list<std::string> recent_files = GetRecentlyOpenedImages();
360 recentlyOpenedFilesMenu=NULL;
361 if ( !recent_files.empty() ) {
362 createRecentlyOpenedFilesMenu();
363 updateRecentlyOpenedFilesMenu(recent_files);
366 // Adding all new tools (insertion in the menu)
367 vvToolManager::GetInstance()->InsertToolsInMenu(this);
368 vvToolManager::GetInstance()->EnableToolsInMenu(this, false);
370 if (!CLITK_EXPERIMENTAL)
371 menuExperimental->menuAction()->setVisible(false);
374 QTimer * timerMemory = new QTimer(this);
375 //timerMemory->setInterval(5);
376 connect(timerMemory, SIGNAL(timeout()), this, SLOT(UpdateMemoryUsage()));
377 timerMemory->start(2000);
380 //------------------------------------------------------------------------------
381 void vvMainWindow::show()
383 vvMainWindowBase::show();
384 PopupRegisterForm(true);
386 //------------------------------------------------------------------------------
387 void vvMainWindow::UpdateMemoryUsage()
389 // clitk::PrintMemory(true);
390 if (clitk::GetMemoryUsageInMb() == 0) infoPanel->setMemoryInMb("NA");
391 else infoPanel->setMemoryInMb(QString::number(clitk::GetMemoryUsageInMb())+" MiB");
393 //------------------------------------------------------------------------------
396 //------------------------------------------------------------------------------
397 void vvMainWindow::createRecentlyOpenedFilesMenu()
399 recentlyOpenedFilesMenu = new QMenu("Recently opened files...");
400 recentlyOpenedFilesMenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
401 menuFile->insertMenu(actionOpen_Image_With_Time,recentlyOpenedFilesMenu);
402 menuFile->insertSeparator(actionOpen_Image_With_Time);
404 //------------------------------------------------------------------------------
407 //------------------------------------------------------------------------------
409 void vvMainWindow::updateRecentlyOpenedFilesMenu(const std::list<std::string> &recent_files)
411 if(recentlyOpenedFilesMenu==NULL) {
412 createRecentlyOpenedFilesMenu();
414 recentlyOpenedFilesMenu->clear();
416 for (std::list<std::string>::const_iterator i = recent_files.begin(); i!=recent_files.end(); i++) {
417 QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")), i->c_str(),this);
418 recentlyOpenedFilesMenu->addAction(current);
419 connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage()));
422 //------------------------------------------------------------------------------
425 //------------------------------------------------------------------------------
426 void vvMainWindow::ComputeMidPosition()
429 int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
430 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
431 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
434 midp.slicer_manager = mSlicerManagers[index];
435 midp.reference_image_index = ref;
436 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
439 QMessageBox::warning(this, "Error computing midposition image",midp.error_message.c_str());
441 QFileInfo info(midp.slicer_manager->GetFileName().c_str());
442 AddImage(midp.output,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_midposition.mhd");
444 QApplication::restoreOverrideCursor();
447 //------------------------------------------------------------------------------
450 //------------------------------------------------------------------------------
451 void vvMainWindow::AddContour(int image_index, vvMesh::Pointer contour, bool propagation)
453 QTreeWidgetItem *item = new QTreeWidgetItem();
454 item->setData(0,Qt::UserRole,"filename.vtk");
455 item->setData(1,Qt::UserRole,tr("contour"));
457 brush.setColor(QColor(contour->r*255,contour->g*255,contour->b*255));
458 brush.setStyle(Qt::SolidPattern);
459 item->setData(COLUMN_IMAGE_NAME,Qt::BackgroundRole,brush);
460 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
462 for (int j = 1; j <= 4; j++)
463 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(image_index)->data(j,Qt::CheckStateRole));
465 QTreePushButton* cButton = new QTreePushButton;
466 cButton->setItem(item);
467 cButton->setColumn(COLUMN_CLOSE_IMAGE);
468 cButton->setToolTip(tr("close image"));
469 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
470 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
471 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
473 QTreePushButton* rButton = new QTreePushButton;
474 rButton->setItem(item);
475 rButton->setColumn(COLUMN_RELOAD_IMAGE);
476 rButton->setToolTip(tr("reload image"));
477 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
478 rButton->setEnabled(false);
480 //connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
481 //this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
483 DataTree->topLevelItem(image_index)->setExpanded(1);
484 DataTree->topLevelItem(image_index)->addChild(item);
485 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
486 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
487 QString id = DataTree->topLevelItem(image_index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
488 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
491 mSlicerManagers[image_index]->AddContour(contour,propagation);
492 mSlicerManagers[image_index]->Render();
494 //------------------------------------------------------------------------------
497 //------------------------------------------------------------------------------
498 void vvMainWindow::OpenVTKContour()
500 if (mSlicerManagers.size() > 0) {
501 QString Extensions = "Images ( *.vtk *.obj)";
502 Extensions += ";;All Files (*)";
503 QString file = QFileDialog::getOpenFileName(this,tr("Open vtkPolyData"),mInputPathName,Extensions);
506 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
507 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
509 reader.SetImage(mSlicerManagers[index]->GetImage());
510 reader.SetModeToVTK();
511 reader.SetFilename(file.toStdString());
513 AddContour(index,reader.GetOutput()[0],false);
514 QApplication::restoreOverrideCursor();
517 //------------------------------------------------------------------------------
520 //------------------------------------------------------------------------------
521 void vvMainWindow::AddDCStructContour(int index, QString file)
524 reader.SetFilename(file.toStdString());
525 vvStructSelector selector;
526 selector.SetStructures(reader.GetROINames());
527 if (!mSlicerManagers[index]->GetVF().IsNull())
528 selector.EnablePropagationCheckBox();
529 if (selector.exec()) {
530 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
531 reader.SetSelectedItems(selector.getSelectedItems());
532 reader.SetImage(mSlicerManagers[index]->GetImage());
533 if (selector.PropagationEnabled())
534 reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
536 std::vector<vvMesh::Pointer> contours=reader.GetOutput();
537 for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
538 i!=contours.end(); i++)
539 AddContour(index,*i,selector.PropagationEnabled());
540 QApplication::restoreOverrideCursor();
544 //------------------------------------------------------------------------------
545 void vvMainWindow::OpenDCStructContour()
547 if (mSlicerManagers.size() > 0) {
548 QString Extensions = "Dicom Files ( *.dcm RS*)";
549 Extensions += ";;All Files (*)";
550 QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
553 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
554 AddDCStructContour(index, file);
557 //------------------------------------------------------------------------------
560 //------------------------------------------------------------------------------
561 void vvMainWindow::ComputeDeformableRegistration()
563 if (mSlicerManagers.size() > 0) {
564 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
565 vvDeformationDialog dialog(index,mSlicerManagers);
567 std::string base_name=itksys::SystemTools::GetFilenameWithoutExtension(mSlicerManagers[dialog.GetInputFileIndex()]->GetFileName());
568 AddField(dialog.GetOutput(),dialog.getFieldFile(),dialog.GetInputFileIndex());
569 WarpImage(dialog.GetSelectedSlicer(),dialog.GetReferenceFrameIndex());
571 std::cout << "Error or user cancellation while computing deformation field..." << std::endl;
572 } else QMessageBox::information(this, "Need to open image","You must open an image first.");
574 //------------------------------------------------------------------------------
577 //------------------------------------------------------------------------------
578 void vvMainWindow::WarpImage()
580 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
581 if (!mSlicerManagers[index]->GetVF().IsNull()) {
583 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
584 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
586 WarpImage(mSlicerManagers[index],ref);
589 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field"));
591 //------------------------------------------------------------------------------
594 //------------------------------------------------------------------------------
595 void vvMainWindow::WarpImage(vvSlicerManager* selected_slicer,int reference_phase)
597 if (!selected_slicer->GetVF().IsNull()) {
598 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
599 QFileInfo info(selected_slicer->GetFileName().c_str());
600 vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
601 reference_phase,this);
602 if (warp.ComputeWarpedImage()) {
603 AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
604 AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
605 AddImage(warp.GetJacobianImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_jacobian.mhd");
606 QApplication::restoreOverrideCursor();
608 QApplication::restoreOverrideCursor();
609 QMessageBox::warning(this,tr("Different spacings"),tr("The vector field and image spacings must be the same in order to warp."));
612 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field."));
614 //------------------------------------------------------------------------------
617 //------------------------------------------------------------------------------
618 vvMainWindow::~vvMainWindow()
620 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
621 if (mSlicerManagers[i] != NULL)
622 delete mSlicerManagers[i];
625 //------------------------------------------------------------------------------
627 //------------------------------------------------------------------------------
628 QTabWidget * vvMainWindow::GetTab()
632 //------------------------------------------------------------------------------
635 //------------------------------------------------------------------------------
636 void vvMainWindow::MergeImages()
638 QString Extensions = EXTENSIONS;
639 Extensions += ";;All Files (*)";
640 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images"),mInputPathName,Extensions);
643 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
644 std::vector<std::string> vector;
646 unsigned int currentDim = 0;
647 std::vector<double> currentSpacing;
648 std::vector<int> currentSize;
649 std::vector<double> currentOrigin;
651 for (int i = 0; i < files.size(); i++) {
652 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
653 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
654 reader->SetFileName(files[i].toStdString().c_str());
655 reader->ReadImageInformation();
657 //NOViewWidget->hide();
658 //NEViewWidget->hide();
659 //SOViewWidget->hide();
660 //SEViewWidget->hide();
662 currentDim = reader->GetNumberOfDimensions();
664 for (unsigned int j = 0; j < currentDim; j++) {
667 currentSpacing.resize(currentDim);
668 currentSize.resize(currentDim);
669 currentOrigin.resize(currentDim);
671 currentOrigin[j] = reader->GetOrigin(j);
672 currentSpacing[j] = reader->GetSpacing(j);
673 currentSize[j] = reader->GetDimensions(j);
674 } else if (currentDim != reader->GetNumberOfDimensions()
675 || currentSpacing[j] != reader->GetSpacing(j)
676 || currentSize[j] != (int)reader->GetDimensions(j)
677 || currentOrigin[j] != reader->GetOrigin(j)) {
678 QString error = "Cannot read file (too different from others ";
679 error += files[i].toStdString().c_str();
680 QMessageBox::information(this,tr("Reading problem"),error);
686 vector.push_back(files[i].toStdString());
689 if (vector.size() > 0)
690 LoadImages(vector, vvImageReader::MERGED);
692 //------------------------------------------------------------------------------
694 //------------------------------------------------------------------------------
695 void vvMainWindow::SliceImages()
697 QString Extensions = EXTENSIONS;
698 Extensions += ";;All Files (*)";
700 QStringList files = QFileDialog::getOpenFileNames(this,tr("Slice Images"),mInputPathName,Extensions);
703 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
704 std::vector<std::string> vector;
705 for (int i = 0; i < files.size(); i++)
706 vector.push_back(files[i].toStdString());
707 LoadImages(vector, vvImageReader::SLICED);
709 //------------------------------------------------------------------------------
711 //------------------------------------------------------------------------------
712 void vvMainWindow::MergeImagesWithTime()
714 QString Extensions = EXTENSIONS;
715 Extensions += ";;All Files (*)";
716 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images With Time"),mInputPathName,Extensions);
719 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
720 std::vector<std::string> vector;
722 for (int i = 0; i < files.size(); i++)
723 vector.push_back(files[i].toStdString());
724 sort(vector.begin(),vector.end());
725 if (vector.size() > 1)
726 LoadImages(vector, vvImageReader::MERGEDWITHTIME);
728 QMessageBox::warning(this,tr("Reading problem"),"You need to select at least two images to merge images with time.\nIf you only want to open one image, please use the \"Open Image\" function.");
730 //------------------------------------------------------------------------------
733 //------------------------------------------------------------------------------
734 void vvMainWindow::OpenDicom()
736 std::vector<std::string> files;
738 std::cout << "dicomSeriesSelector " << std::endl;
739 if (dicomSeriesSelector->exec() == QDialog::Accepted) {
740 files = *(dicomSeriesSelector->GetFilenames());
741 LoadImages(files, vvImageReader::DICOM);
744 //------------------------------------------------------------------------------
746 //------------------------------------------------------------------------------
747 void vvMainWindow::OpenImages()
749 QString Extensions = EXTENSIONS;
750 Extensions += ";;All Files (*)";
752 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images"),mInputPathName,Extensions);
755 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
756 std::vector<std::string> vector;
757 for (int i = 0; i < files.size(); i++)
758 vector.push_back(files[i].toStdString());
759 LoadImages(vector, vvImageReader::IMAGE);
761 //------------------------------------------------------------------------------
762 void vvMainWindow::OpenRecentImage()
764 QAction * caller = qobject_cast<QAction*>(sender());
765 std::vector<std::string> images;
766 images.push_back(caller->text().toStdString());
767 mInputPathName = itksys::SystemTools::GetFilenamePath(images[0]).c_str();
768 LoadImages(images, vvImageReader::IMAGE);
770 //------------------------------------------------------------------------------
773 //------------------------------------------------------------------------------
774 void vvMainWindow::OpenImageWithTime()
776 QString Extensions = EXTENSIONS;
777 Extensions += ";;All Files (*)";
779 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images With Time"),mInputPathName,Extensions);
782 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
783 std::vector<std::string> vector;
784 for (int i = 0; i < files.size(); i++) {
785 vector.push_back(files[i].toStdString());
787 LoadImages(vector, vvImageReader::IMAGEWITHTIME);
789 //------------------------------------------------------------------------------
792 //------------------------------------------------------------------------------
793 void vvMainWindow::LoadImages(std::vector<std::string> files, vvImageReader::LoadedImageType filetype)
795 //Separate the way to open images and dicoms
797 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME)
798 fileSize = files.size();
802 // For SLICED, we need the number of slices (ndim and #slices)
803 std::vector<unsigned int> nSlices;
804 nSlices.resize(files.size());
805 std::fill(nSlices.begin(), nSlices.end(), 1);
806 if (filetype == vvImageReader::SLICED) {
807 for (int i = 0; i < fileSize; i++) {
808 itk::ImageIOBase::Pointer header = clitk::readImageHeader(files[i]);
809 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
812 QString error = "Cannot open file \n";
813 error += files[i].c_str();
814 QMessageBox::information(this,tr("Reading problem"),error);
817 if (header->GetNumberOfDimensions() < 3) {
819 QString error = "Dimension problem. Cannot slice \n";
820 error += files[i].c_str();
821 QMessageBox::information(this,tr("Reading problem"),error);
824 nSlices[i] = header->GetDimensions( header->GetNumberOfDimensions()-1 );
828 //Only add to the list of recently opened files when a single file is opened,
829 //to avoid polluting the list of recently opened files
830 if (files.size() == 1) {
831 QFileInfo finfo=tr(files[0].c_str());
832 AddToRecentlyOpenedImages(finfo.absoluteFilePath().toStdString());
833 updateRecentlyOpenedFilesMenu(GetRecentlyOpenedImages());
835 //init the progress events
836 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
837 vvProgressDialog progress("Opening " + files[0],fileSize>1);
838 qApp->processEvents();
840 int numberofsuccesulreads=0;
841 //open images as 1 or multiples
842 for (int i = 0; i < fileSize; i++) {
843 progress.SetText("Opening " + files[i]);
844 progress.SetProgress(i,fileSize);
845 qApp->processEvents();
847 for (unsigned int j = 0; j < nSlices[i]; j++) {
848 //read the image and put it in mSlicerManagers
849 vvSlicerManager* imageManager = new vvSlicerManager(4);
850 qApp->processEvents();
852 bool SetImageSucceed=false;
854 // Change filename if an image with the same already exist
855 int number = GetImageDuplicateFilenameNumber(files[i] + std::string("_slice"));
857 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME || filetype == vvImageReader::SLICED)
858 SetImageSucceed = imageManager->SetImage(files[i],filetype, number, j);
860 SetImageSucceed = imageManager->SetImages(files,filetype, number);
863 if (!SetImageSucceed) {
864 QApplication::restoreOverrideCursor();
865 QString error = "Cannot open file \n";
866 error += imageManager->GetLastError().c_str();
867 QMessageBox::information(this,tr("Reading problem"),error);
870 mSlicerManagers.push_back(imageManager);
872 //create an item in the tree with good settings
873 QTreeWidgetItem *item = new QTreeWidgetItem();
874 item->setData(0,Qt::UserRole,files[i].c_str());
875 QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
876 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
877 item->setData(1,Qt::UserRole,tr("image"));
878 item->setToolTip(COLUMN_IMAGE_NAME, imageManager->GetListOfAbsoluteFilePathInOneString("image").c_str());
879 qApp->processEvents();
881 //Create the buttons for reload and close
882 qApp->processEvents();
883 QTreePushButton* cButton = new QTreePushButton;
884 cButton->setItem(item);
885 cButton->setColumn(COLUMN_CLOSE_IMAGE);
886 cButton->setToolTip(tr("close image"));
887 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
888 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
889 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
891 QTreePushButton* rButton = new QTreePushButton;
892 rButton->setItem(item);
893 rButton->setColumn(COLUMN_RELOAD_IMAGE);
894 rButton->setToolTip(tr("reload image"));
895 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
896 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
897 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
899 DataTree->addTopLevelItem(item);
900 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
901 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
903 //set the id of the image
904 QString id = QDir::current().absoluteFilePath(files[i].c_str()) + QString::number(mSlicerManagers.size()-1);
905 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
906 mSlicerManagers.back()->SetId(id.toStdString());
908 linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
910 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
911 this,SLOT(CurrentImageChanged(std::string)));
912 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
913 this, SLOT(CurrentPickedImageChanged(std::string)));
914 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
915 this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
916 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
917 this, SLOT(VectorChanged(int,double,double,double, double)));
918 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
919 this, SLOT(OverlayChanged(int,double,double)));
920 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
921 this, SLOT(FusionChanged(int,double)));
922 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
923 this,SLOT(WindowLevelChanged()));
924 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
925 this,SLOT(UpdateSlice(int,int)));
926 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
927 this,SLOT(UpdateTSlice(int, int)));
928 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
929 this,SLOT(ImageInfoChanged()));
930 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
931 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
932 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
933 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
934 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
935 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
936 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
937 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
938 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
941 numberofsuccesulreads++;
945 if (numberofsuccesulreads) {
946 NOViewWidget->show();
947 NEViewWidget->show();
948 SOViewWidget->show();
949 SEViewWidget->show();
954 // Try to guess default WindowLevel
956 mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
957 if ((range[0] == 0) && (range[1] == 1)) {
958 presetComboBox->setCurrentIndex(5);// binary
963 QApplication::restoreOverrideCursor();
965 //------------------------------------------------------------------------------
967 //------------------------------------------------------------------------------
968 void vvMainWindow::UpdateTree()
970 DataTree->resizeColumnToContents(COLUMN_TREE);
971 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
972 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
973 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
974 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
975 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
976 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
977 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
979 //------------------------------------------------------------------------------
981 //------------------------------------------------------------------------------
982 void vvMainWindow::CurrentImageChanged(std::string id)
984 if (id == mCurrentSelectedImageId) return; // Do nothing
986 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
987 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
990 DataTree->topLevelItem(i)->setSelected(0);
992 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
993 DataTree->topLevelItem(i)->child(child)->setSelected(0);
996 DataTree->topLevelItem(selected)->setSelected(1);
997 mCurrentSelectedImageId = id;
998 emit SelectedImageHasChanged(mSlicerManagers[selected]);
1000 //------------------------------------------------------------------------------
1002 //------------------------------------------------------------------------------
1003 void vvMainWindow::CurrentPickedImageChanged(std::string id)
1005 if (id == mCurrentPickedImageId) return; // Do nothing
1007 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1008 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
1011 DataTree->topLevelItem(i)->setSelected(0);
1013 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
1014 DataTree->topLevelItem(i)->child(child)->setSelected(0);
1017 DataTree->topLevelItem(selected)->setSelected(1);
1018 mCurrentPickedImageId = id;
1019 mCurrentPickedImageIndex = selected;
1021 //------------------------------------------------------------------------------
1023 //------------------------------------------------------------------------------
1024 void vvMainWindow::ImageInfoChanged()
1026 contextActions[6]->setEnabled(1);
1027 contextActions[5]->setEnabled(1);
1028 actionSave_As->setEnabled(1);
1029 actionAdd_VF_to_current_Image->setEnabled(1);
1030 actionAdd_fusion_image->setEnabled(1);
1031 actionAdd_overlay_image_to_current_image->setEnabled(1);
1032 actionAdd_USSequence_toCT->setEnabled(1);
1033 actionNorth_East_Window->setEnabled(1);
1034 actionNorth_West_Window->setEnabled(1);
1035 actionSouth_East_Window->setEnabled(1);
1036 actionSouth_West_Window->setEnabled(1);
1037 vvToolManager::GetInstance()->EnableToolsInMenu(this, true);
1038 inverseButton->setEnabled(1);
1040 goToCursorPushButton->setEnabled(1);
1042 if (DataTree->selectedItems().size()) {
1043 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1045 colorMapComboBox->setEnabled(1);
1046 for (int i = 0; i < DataTree->topLevelItem(index)->childCount(); i++) {
1047 if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
1048 DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion" ||
1049 DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusionSequence") {
1050 colorMapComboBox->setEnabled(0);
1055 std::vector<double> origin;
1056 std::vector<double> inputSpacing;
1057 std::vector<int> inputSize;
1058 std::vector<double> sizeMM;
1059 vtkSmartPointer<vtkMatrix4x4> transformation;
1062 QString inputSizeInBytes;
1063 QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1065 int nframes = mSlicerManagers[index]->GetSlicer(0)->GetTMax();
1067 if (nframes > 1 || playMode == 1) {
1068 playButton->setEnabled(1);
1069 frameRateLabel->setEnabled(1);
1070 frameRateSpinBox->setEnabled(1);
1072 playButton->setEnabled(0);
1073 frameRateLabel->setEnabled(0);
1074 frameRateSpinBox->setEnabled(0);
1081 vvImage::Pointer imageSelected;
1082 if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
1083 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1084 tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
1085 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
1086 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
1087 tSlice = mSlicerManagers[index]->GetSlicer(0)->GetOverlayTSlice();
1088 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
1089 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
1090 tSlice = mSlicerManagers[index]->GetSlicer(0)->GetOverlayTSlice();
1091 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
1092 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
1093 tSlice = mSlicerManagers[index]->GetSlicer(0)->GetFusionTSlice();
1095 else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusionSequence") {
1096 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
1097 tSlice = mSlicerManagers[index]->GetSlicer(0)->GetFusionTSlice();
1099 else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "contour") {
1100 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1101 tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
1104 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1105 tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
1108 dimension = imageSelected->GetNumberOfDimensions();
1109 origin.resize(dimension);
1110 inputSpacing.resize(dimension);
1111 inputSize.resize(dimension);
1112 sizeMM.resize(dimension);
1113 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1114 for (int i = 0; i < dimension; i++) {
1115 origin[i] = imageSelected->GetOrigin()[i];
1116 inputSpacing[i] = imageSelected->GetSpacing()[i];
1117 inputSize[i] = imageSelected->GetSize()[i];
1118 sizeMM[i] = inputSize[i]*inputSpacing[i];
1119 NPixel *= inputSize[i];
1121 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1123 QString dim = QString::number(dimension) + " (";
1124 dim += pixelType + ")";
1126 infoPanel->setFileName(image);
1127 infoPanel->setDimension(dim);
1128 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1129 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1130 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1131 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1132 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1134 transformation = imageSelected->GetTransform()[tSlice]->GetMatrix();
1135 infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
1137 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1138 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1139 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1140 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1142 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1143 for (int i = 0; i < 4; i++) {
1144 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1145 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1150 infoPanel->setFileName(image);
1151 infoPanel->setDimension(dim);
1152 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1153 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1154 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1155 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1156 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1158 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1159 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1160 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1161 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1163 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1164 for (int i = 0; i < 4; i++) {
1165 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1166 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1170 WindowLevelChanged();
1172 slicingPresetComboBox->setCurrentIndex(mSlicerManagers[index]->GetSlicingPreset());
1174 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
1175 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1176 overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
1177 mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
1178 mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
1180 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1181 overlayPanel->getVFProperty(-1,-1,-1);
1183 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
1184 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1186 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1189 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
1190 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1192 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1196 //------------------------------------------------------------------------------
1198 //------------------------------------------------------------------------------
1199 void vvMainWindow::ShowDocumentation()
1201 documentation->show();
1203 //------------------------------------------------------------------------------
1205 //------------------------------------------------------------------------------
1206 void vvMainWindow::PopupRegisterForm(bool checkCanPush)
1208 vvRegisterForm* registerForm = new vvRegisterForm(QUrl("http://www.creatis.insa-lyon.fr/~dsarrut/vvregister/write.php"), getVVSettingsPath(), getSettingsOptionFormat());
1210 registerForm->show();
1212 if(registerForm->canPush()) {
1213 registerForm->show();
1214 registerForm->acquitPushed();//too bad if there is not internet connection anymore.
1218 //------------------------------------------------------------------------------
1220 //------------------------------------------------------------------------------
1221 void vvMainWindow::ShowHelpDialog()
1223 help_dialog->show();
1225 //------------------------------------------------------------------------------
1227 //------------------------------------------------------------------------------
1228 void vvMainWindow::ChangeViewMode()
1230 typedef struct _SIZE{
1231 QSplitter* splitter;
1232 QList<int> size1, size2;
1235 SplitterSize sizes[4];
1236 sizes[0].splitter = OSplitter;
1237 sizes[0].size1.push_back(1);
1238 sizes[0].size1.push_back(0);
1239 sizes[0].size2.push_back(1);
1240 sizes[0].size2.push_back(0);
1241 sizes[0].cols[0] = 2;
1242 sizes[0].cols[1] = 3;
1243 sizes[0].cols[2] = 4;
1245 sizes[1].splitter = ESplitter;
1246 sizes[1].size1.push_back(0);
1247 sizes[1].size1.push_back(1);
1248 sizes[1].size2.push_back(1);
1249 sizes[1].size2.push_back(0);
1250 sizes[1].cols[0] = 1;
1251 sizes[1].cols[1] = 3;
1252 sizes[1].cols[2] = 4;
1254 sizes[2].splitter = OSplitter;
1255 sizes[2].size1.push_back(1);
1256 sizes[2].size1.push_back(0);
1257 sizes[2].size2.push_back(0);
1258 sizes[2].size2.push_back(1);
1259 sizes[2].cols[0] = 1;
1260 sizes[2].cols[1] = 2;
1261 sizes[2].cols[2] = 4;
1263 sizes[3].splitter = ESplitter;
1264 sizes[3].size1.push_back(0);
1265 sizes[3].size1.push_back(1);
1266 sizes[3].size2.push_back(0);
1267 sizes[3].size2.push_back(1);
1268 sizes[3].cols[0] = 1;
1269 sizes[3].cols[1] = 2;
1270 sizes[3].cols[2] = 3;
1272 int slicer = mSlicerManagers[mCurrentPickedImageIndex]->GetSelectedSlicer();
1273 if (viewMode == 1) {
1276 splitter_3->setSizes(sizes[slicer].size1);
1277 sizes[slicer].splitter->setSizes(sizes[slicer].size2);
1278 DataTree->setColumnHidden(sizes[slicer].cols[0],1);
1279 DataTree->setColumnHidden(sizes[slicer].cols[1],1);
1280 DataTree->setColumnHidden(sizes[slicer].cols[2],1);
1288 splitter_3->setSizes(size);
1289 sizes[slicer].splitter->setSizes(size);
1290 DataTree->setColumnHidden(sizes[slicer].cols[0],0);
1291 DataTree->setColumnHidden(sizes[slicer].cols[1],0);
1292 DataTree->setColumnHidden(sizes[slicer].cols[2],0);
1295 UpdateRenderWindows();
1297 ** I don't know why but for both resized QVTKWidget we also need to render
1298 ** the associated Slicer to redraw crosses.
1300 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1301 // if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
1302 mSlicerManagers[i]->GetSlicer(0)->Render();
1303 mSlicerManagers[i]->GetSlicer(1)->Render();
1304 // if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
1305 mSlicerManagers[i]->GetSlicer(2)->Render();
1306 mSlicerManagers[i]->GetSlicer(3)->Render();
1309 //------------------------------------------------------------------------------
1311 //------------------------------------------------------------------------------
1312 QString vvMainWindow::GetSizeInBytes(unsigned long size)
1314 QString result = "";// QString::number(size);
1315 //result += " bytes (";
1316 if (size > 1000000000) {
1318 result += QString::number(size);
1319 result += "Gb";//)";
1320 } else if (size > 1000000) {
1322 result += QString::number(size);
1323 result += "Mb";//)";
1324 } else if (size > 1000) {
1326 result += QString::number(size);
1327 result += "kb";//)";
1331 //------------------------------------------------------------------------------
1333 //------------------------------------------------------------------------------
1334 QString vvMainWindow::Get4x4MatrixDoubleAsString(vtkSmartPointer<vtkMatrix4x4> matrix, const int precision)
1336 std::ostringstream strmatrix;
1338 // Figure out the number of digits of the integer part of the largest absolute value
1341 for (unsigned int j = 0; j < 4; j++){
1343 for (unsigned int i = 0; i < 4; i++)
1344 absmax = std::max(absmax, vnl_math_abs(matrix->GetElement(i, j)));
1345 unsigned ndigits = (unsigned)std::max(0.,std::log10(absmax))+1;
1346 width[j] = precision+ndigits+3;
1349 // Output with correct width, aligned to the right
1350 for (unsigned int i = 0; i < 4; i++) {
1351 for (unsigned int j = 0; j < 4; j++) {
1352 strmatrix.setf(ios::fixed,ios::floatfield);
1353 strmatrix.precision(precision);
1354 strmatrix.fill(' ');
1355 strmatrix.width(width[j]);
1356 strmatrix << std::right << matrix->GetElement(i, j);
1358 strmatrix << std::endl;
1360 QString result = strmatrix.str().c_str();
1363 //------------------------------------------------------------------------------
1365 //------------------------------------------------------------------------------
1366 QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble)
1369 for (unsigned int i= 0; i < vectorDouble.size(); i++) {
1372 result += QString::number(vectorDouble[i]);
1376 //------------------------------------------------------------------------------
1378 //------------------------------------------------------------------------------
1379 QString vvMainWindow::GetVectorIntAsString(std::vector<int> vectorInt)
1382 for (unsigned int i= 0; i < vectorInt.size(); i++) {
1385 result += QString::number(vectorInt[i]);
1389 //------------------------------------------------------------------------------
1391 //------------------------------------------------------------------------------
1392 //this actually returns the SlicerManager index!
1393 int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item)
1395 QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1396 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1397 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1402 //------------------------------------------------------------------------------
1404 //------------------------------------------------------------------------------
1405 QTreeWidgetItem* vvMainWindow::GetItemFromSlicerManager(vvSlicerManager* sm)
1407 QString id = sm->GetId().c_str();
1408 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1409 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1410 return DataTree->topLevelItem(i);
1414 //------------------------------------------------------------------------------
1416 //------------------------------------------------------------------------------
1417 void vvMainWindow::DisplayChanged(QTreeWidgetItem *clickedItem, int column)
1419 if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
1422 // Get parent information (might be the same item)
1423 int slicerManagerIndex = GetSlicerIndexFromItem(clickedItem);
1424 QTreeWidgetItem* clickedParentItem = DataTree->topLevelItem(slicerManagerIndex);
1425 vvSlicer* clickedSlicer = mSlicerManagers[slicerManagerIndex]->GetSlicer(column-1);
1427 // Go over the complete item tree (only 2 levels, parents and children)
1428 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1429 // Trick to avoid redoing twice the job for a key (sr)
1430 mSlicerManagers[i]->GetSlicer(column-1)->GetRenderWindow()->GetInteractor()->SetKeySym("Crap");
1432 QTreeWidgetItem* currentParentItem = DataTree->topLevelItem(i);
1433 if(currentParentItem != clickedParentItem) {
1434 // Not the branch of the clicked item, uncheck all
1437 currentParentItem->setData(column,Qt::CheckStateRole, 0);
1438 mSlicerManagers[i]->UpdateSlicer(column-1, false);
1441 for (int iChild = 0; iChild < currentParentItem->childCount(); iChild++) {
1442 currentParentItem->child(iChild)->setData(column,Qt::CheckStateRole, 0);
1446 // Branch of the clicked one: get check status from actor visibility in slicer
1447 // and toggle the clicked one
1450 bool vis = clickedSlicer->GetActorVisibility("image", 0);
1451 bool draw = clickedSlicer->GetRenderer()->GetDraw();
1453 // Update slicer (after getting visibility)
1454 mSlicerManagers[slicerManagerIndex]->UpdateSlicer(column-1, true);
1455 mSlicerManagers[slicerManagerIndex]->UpdateInfoOnCursorPosition(column-1);
1456 DisplaySliders(slicerManagerIndex, column-1);
1457 if(clickedParentItem == clickedItem) {
1459 vis = !draw || !vis;
1461 clickedSlicer->SetActorVisibility("image", 0, vis);
1462 clickedParentItem->setData(column, Qt::CheckStateRole, vis?2:0);
1465 std::map<std::string, int> actorTypeCounts;
1466 for (int iChild = 0; iChild < clickedParentItem->childCount(); iChild++) {
1467 QTreeWidgetItem* currentChildItem = clickedParentItem->child(iChild);
1468 std::string actorType = currentChildItem->data(1,Qt::UserRole).toString().toStdString();
1469 vis = clickedSlicer->GetActorVisibility(actorType, actorTypeCounts[actorType]);
1470 if(currentChildItem == clickedItem) {
1471 // Toggle or force visibility if it was not on this branch so far
1472 vis = !draw || !vis;
1473 clickedSlicer->SetActorVisibility(actorType, actorTypeCounts[actorType], vis);
1475 currentChildItem->setData(column, Qt::CheckStateRole, vis?2:0);
1476 actorTypeCounts[actorType]++;
1481 clickedSlicer->Render();
1483 //------------------------------------------------------------------------------
1485 void vvMainWindow::InitSlicers()
1487 if (mSlicerManagers.size()) {
1488 mSlicerManagers.back()->GenerateDefaultLookupTable();
1490 mSlicerManagers.back()->SetSlicerWindow(0,NOViewWidget->GetRenderWindow());
1491 mSlicerManagers.back()->SetSlicerWindow(1,NEViewWidget->GetRenderWindow());
1492 mSlicerManagers.back()->SetSlicerWindow(2,SOViewWidget->GetRenderWindow());
1493 mSlicerManagers.back()->SetSlicerWindow(3,SEViewWidget->GetRenderWindow());
1497 //------------------------------------------------------------------------------
1498 void vvMainWindow::InitDisplay()
1500 if (mSlicerManagers.size()) {
1501 //BE CAREFUL : this is absolutely necessary to set the interactor style
1502 //in order to have the same style instanciation for all SlicerManagers in
1504 for (int j = 0; j < 4; j++) {
1505 vvInteractorStyleNavigator* style = vvInteractorStyleNavigator::New();
1506 style->SetAutoAdjustCameraClippingRange(1);
1507 bool AlreadySelected = false;
1508 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1509 mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
1511 //select the image only if previous are not selected
1512 if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1) {
1513 mSlicerManagers[i]->UpdateSlicer(j,1);
1514 AlreadySelected = true;
1515 } else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected) {
1516 if (DataTree->selectedItems().size() == 0)
1517 DataTree->topLevelItem(i)->setSelected(1); //RB: crash here when loading an image...
1518 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
1519 mSlicerManagers[i]->UpdateSlicer(j,1);
1520 DisplaySliders(i,j);
1522 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,0);
1523 mSlicerManagers[i]->UpdateSlicer(j,0);
1530 //------------------------------------------------------------------------------
1532 //------------------------------------------------------------------------------
1533 void vvMainWindow::DisplaySliders(int slicer, int window)
1535 if(!mSlicerManagers[slicer]->GetSlicer(window)->GetRenderer()->GetDraw())
1539 mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
1540 int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
1542 verticalSliders[window]->show();
1544 verticalSliders[window]->hide();
1545 verticalSliders[window]->setRange(range[0],range[1]);
1546 verticalSliders[window]->setValue(position);
1550 tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
1552 horizontalSliders[window]->show();
1554 horizontalSliders[window]->hide();
1555 horizontalSliders[window]->setRange(tRange[0],tRange[1]);
1556 int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetMaxCurrentTSlice();
1557 horizontalSliders[window]->setValue(tPosition);
1559 //------------------------------------------------------------------------------
1561 //------------------------------------------------------------------------------
1562 void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column)
1564 int index = GetSlicerIndexFromItem(item);
1566 if (DataTree->topLevelItem(index) != item) {
1567 QString warning = "Do you really want to close the overlay : ";
1568 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1569 QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
1571 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1572 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1573 if (msgBox.exec() == QMessageBox::AcceptRole) {
1574 std::string overlay_type=item->data(1,Qt::UserRole).toString().toStdString();
1575 int overlay_index=0;
1576 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++) {
1577 if (DataTree->topLevelItem(index)->\
1578 child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1580 if (DataTree->topLevelItem(index)->child(child) == item) break;
1582 if (overlay_type=="fusionSequence") {
1583 //removing the overlay sequence in a fusion sequence visualization mode
1584 //TODO: remove the synchronization (transform matrices, etc...)
1586 //=> unlink and untie the slicer managers
1587 mSlicerManagers[index]->SetFusionSequenceInvolvmentCode(-1);
1588 mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->SetFusionSequenceInvolvmentCode(-1);
1589 RemoveLink(mSlicerManagers[index]->GetId().c_str(), mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->GetId().c_str());
1592 mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
1593 mSlicerManagers[index]->SetColorMap(0);
1594 DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
1595 mSlicerManagers[index]->Render();
1597 } else if (DataTree->topLevelItemCount() <= 1) {
1598 QString warning = "Do you really want to close the image : ";
1599 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1600 warning += "\nThis is the last image, you're about to close vv !!!";
1601 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1603 msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
1604 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1605 if (msgBox.exec() == QMessageBox::AcceptRole) {
1609 QString warning = "Do you really want to close the image : ";
1610 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1611 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1613 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1614 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1615 if (msgBox.exec() == QMessageBox::AcceptRole) {
1617 // Tell tools that we close an image
1618 emit AnImageIsBeingClosed(mSlicerManagers[index]);
1620 std::vector<vvSlicerManager*>::iterator Manageriter = mSlicerManagers.begin();
1621 DataTree->takeTopLevelItem(index);
1622 for (int i = 0; i < index; i++) {
1625 linkPanel->removeImage(index);
1626 mSlicerManagers[index]->RemoveActors();
1628 //if the slicer manager was involved in a fusion sequence visualization...
1629 if ( item->data(1,Qt::UserRole).toString().toStdString() == "fusionSequence" ) {
1631 //make sure both SlicerManager exit the FusionSequence visualization mode
1632 //disable the temporal and spatial sync? make sure we reset the spatial transforms to their initial states...
1633 mSlicerManagers[index]->SetFusionSequenceInvolvmentCode(-1);
1634 mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->SetFusionSequenceInvolvmentCode(-1);
1637 //remove the slicer manager
1638 delete mSlicerManagers[index];
1639 mSlicerManagers.erase(Manageriter);
1647 //------------------------------------------------------------------------------
1649 //------------------------------------------------------------------------------
1650 void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column)
1652 // int index = GetSlicerIndexFromItem(item);
1653 // QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1654 // if (item->data(1,Qt::UserRole).toString() == "vector")
1655 // mSlicerManagers[index]->ReloadVF();
1657 // mSlicerManagers[index]->Reload();
1659 // QApplication::restoreOverrideCursor();
1660 int index = GetSlicerIndexFromItem(item);
1661 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1662 QString role=item->data(1,Qt::UserRole).toString();
1663 if ( role == "vector") {
1664 mSlicerManagers[index]->ReloadVF();
1666 else if (role == "overlay") {
1667 mSlicerManagers[index]->ReloadOverlay();
1669 else if (role == "fusion") {
1670 mSlicerManagers[index]->ReloadFusion();
1672 else if (role == "fusionSequence") {
1673 //both versions of the secondary sequence must be updated.
1674 mSlicerManagers[index]->ReloadFusionSequence();
1675 mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->Reload();
1678 mSlicerManagers[index]->Reload();
1679 //if we update the secondary sequence, then the overlay of the main sequence should also be updated
1680 if (mSlicerManagers[index]->IsSecondarySequenceOfFusionSequence()) mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->ReloadFusionSequence();
1682 // Update view and info
1684 mSlicerManagers[index]->Render();
1685 QApplication::restoreOverrideCursor();
1687 //------------------------------------------------------------------------------
1689 //------------------------------------------------------------------------------
1690 void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value)
1692 infoPanel->setCurrentInfo(visibility,x,y,z,X,Y,Z,value);
1694 //------------------------------------------------------------------------------
1696 //------------------------------------------------------------------------------
1697 void vvMainWindow::VectorChanged(int visibility,double x, double y, double z, double value)
1699 overlayPanel->getCurrentVectorInfo(visibility,x,y,z,value);
1701 //------------------------------------------------------------------------------
1703 //------------------------------------------------------------------------------
1704 void vvMainWindow::OverlayChanged(int visibility, double valueOver, double valueRef)
1706 overlayPanel->getCurrentOverlayInfo(visibility,valueOver, valueRef);
1708 //------------------------------------------------------------------------------
1710 //------------------------------------------------------------------------------
1711 void vvMainWindow::FusionChanged(int visibility, double value)
1713 overlayPanel->getCurrentFusionInfo(visibility,value);
1715 //------------------------------------------------------------------------------
1717 //------------------------------------------------------------------------------
1718 void vvMainWindow::WindowLevelChanged()
1721 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1722 if(index==-1) return;
1723 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1724 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1725 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1726 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1729 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay())
1730 overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor(),
1731 mSlicerManagers[index]->GetLinkOverlayWindowLevel(),
1732 mSlicerManagers[index]->GetOverlayColorWindow(),
1733 mSlicerManagers[index]->GetOverlayColorLevel());
1735 overlayPanel->getOverlayProperty(-1,0,0.,0.);
1737 // Fusion & SequenceFusion image
1738 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
1739 overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
1740 mSlicerManagers[index]->GetFusionThresholdOpacity(),
1741 mSlicerManagers[index]->GetFusionColorMap(),
1742 mSlicerManagers[index]->GetFusionWindow(),
1743 mSlicerManagers[index]->GetFusionLevel());
1744 if (mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) {
1745 overlayPanel->getFusionSequenceProperty(mSlicerManagers[index]->GetFusionSequenceFrameIndex(),
1746 mSlicerManagers[index]->GetFusionSequenceSpatialSyncFlag(),
1747 mSlicerManagers[index]->GetFusionSequenceNbFrames(),
1748 mSlicerManagers[index]->GetFusionSequenceTemporalSyncFlag());
1751 else if ( mSlicerManagers[index]->IsSecondarySequenceOfFusionSequence() ) {
1752 //if the image is involved in a fusion sequence, preserve the overlay panel!
1753 int ind = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
1754 overlayPanel->getFusionProperty(mSlicerManagers[ind]->GetFusionOpacity(),
1755 mSlicerManagers[ind]->GetFusionThresholdOpacity(),
1756 mSlicerManagers[ind]->GetFusionColorMap(),
1757 mSlicerManagers[ind]->GetFusionWindow(),
1758 mSlicerManagers[ind]->GetFusionLevel());
1759 overlayPanel->getFusionSequenceProperty(mSlicerManagers[ind]->GetFusionSequenceFrameIndex(),
1760 mSlicerManagers[ind]->GetFusionSequenceSpatialSyncFlag(),
1761 mSlicerManagers[ind]->GetFusionSequenceNbFrames(),
1762 mSlicerManagers[ind]->GetFusionSequenceTemporalSyncFlag());
1766 overlayPanel->getFusionProperty(-1, -1, -1, -1, -1);
1767 overlayPanel->getFusionSequenceProperty(-1, false, 0, false);
1770 //------------------------------------------------------------------------------
1772 //------------------------------------------------------------------------------
1773 void vvMainWindow::WindowLevelEdited()
1775 presetComboBox->setCurrentIndex(6);
1776 UpdateWindowLevel();
1778 //------------------------------------------------------------------------------
1780 //------------------------------------------------------------------------------
1781 void vvMainWindow::SetWindowLevel(double w, double l)
1783 windowSpinBox->setValue(w);
1784 levelSpinBox->setValue(l);
1785 presetComboBox->setCurrentIndex(6);
1786 colorMapComboBox->setCurrentIndex(0);
1787 UpdateWindowLevel();
1789 //------------------------------------------------------------------------------
1791 //------------------------------------------------------------------------------
1792 void vvMainWindow::UpdateWindowLevel()
1794 if (DataTree->selectedItems().size()) {
1795 if (presetComboBox->currentIndex() == 7) //For ventilation
1796 colorMapComboBox->setCurrentIndex(5);
1797 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1798 mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
1799 mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
1800 mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
1801 mSlicerManagers[index]->Render();
1802 WindowLevelChanged();
1805 //------------------------------------------------------------------------------
1807 //------------------------------------------------------------------------------
1808 void vvMainWindow::UpdateSlicingPreset()
1810 if (DataTree->selectedItems().size()) {
1811 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1812 mSlicerManagers[index]->SetSlicingPreset(vvSlicerManager::SlicingPresetType(slicingPresetComboBox->currentIndex()));
1815 //------------------------------------------------------------------------------
1817 //------------------------------------------------------------------------------
1818 void vvMainWindow::UpdateColorMap()
1820 if (DataTree->selectedItems().size()) {
1821 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1822 mSlicerManagers[index]->SetColorMap(colorMapComboBox->currentIndex());
1823 mSlicerManagers[index]->Render();
1826 //------------------------------------------------------------------------------
1827 void vvMainWindow::SwitchWindowLevel()
1829 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1830 int window = mSlicerManagers[index]->GetColorWindow();
1831 presetComboBox->setCurrentIndex(6);
1832 windowSpinBox->setValue(-window);
1833 UpdateWindowLevel();
1835 //------------------------------------------------------------------------------
1837 //------------------------------------------------------------------------------
1838 void vvMainWindow::ApplyWindowLevelToAllImages()
1840 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1841 if(index==-1) return;
1842 double window = mSlicerManagers[index]->GetColorWindow();
1843 double level = mSlicerManagers[index]->GetColorLevel();
1845 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1846 if (mSlicerManagers[i] == NULL)
1848 mSlicerManagers[i]->SetColorWindow(window);
1849 mSlicerManagers[i]->SetColorLevel(level);
1850 mSlicerManagers[i]->SetPreset(6);
1851 mSlicerManagers[i]->Render();
1854 //------------------------------------------------------------------------------
1856 //------------------------------------------------------------------------------
1857 void vvMainWindow::ApplyWindowToSetOfImages(double window, unsigned int indexMin, unsigned int indexMax)
1859 for (unsigned int i = indexMin; i <= indexMax && i < mSlicerManagers.size(); i++) {
1860 if (mSlicerManagers[i] == NULL)
1862 mSlicerManagers[i]->SetColorWindow(window);
1863 mSlicerManagers[i]->SetPreset(6);
1864 mSlicerManagers[i]->Render();
1867 //------------------------------------------------------------------------------
1869 //------------------------------------------------------------------------------
1870 void vvMainWindow::ApplyLevelToSetOfImages(double level, unsigned int indexMin, unsigned int indexMax)
1872 for (unsigned int i = indexMin; i <= indexMax && i < mSlicerManagers.size(); i++) {
1873 if (mSlicerManagers[i] == NULL)
1875 mSlicerManagers[i]->SetColorLevel(level);
1876 mSlicerManagers[i]->SetPreset(6);
1877 mSlicerManagers[i]->Render();
1880 //------------------------------------------------------------------------------
1882 //------------------------------------------------------------------------------
1883 void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
1885 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1886 if (mSlicerManagers[i]->GetId() == id) {
1887 mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
1888 mSlicerManagers[i]->UpdateViews(0,slicer);
1893 //------------------------------------------------------------------------------
1895 //------------------------------------------------------------------------------
1896 void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm, vvSlicer* refSlicer)
1898 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1899 if (id == mSlicerManagers[i]->GetId()) {
1900 mSlicerManagers[i]->UpdateLinkedNavigation(refSlicer);
1904 //------------------------------------------------------------------------------
1906 //------------------------------------------------------------------------------
1907 void vvMainWindow::ShowContextMenu(QPoint point)
1909 if (!DataTree->selectedItems().size()) {
1910 contextActions[1]->setEnabled(0);
1911 contextActions[2]->setEnabled(0);
1912 contextActions[3]->setEnabled(0);
1913 contextActions[4]->setEnabled(0);
1914 contextActions[5]->setEnabled(0);
1915 contextActions[6]->setEnabled(0);
1917 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1918 contextActions[1]->setEnabled(1);
1919 contextActions[2]->setEnabled(
1920 DataTree->itemWidget(DataTree->selectedItems()[0],
1921 COLUMN_RELOAD_IMAGE)->isEnabled());
1922 contextActions[3]->setEnabled(1);
1923 contextActions[5]->setEnabled(1);
1924 contextActions[6]->setEnabled(1);
1926 if (mSlicerManagers[index]->GetDimension() < 3)
1927 contextActions[4]->setEnabled(0);
1929 contextActions[4]->setEnabled(1);
1931 contextMenu.exec(QCursor::pos());
1933 //------------------------------------------------------------------------------
1935 //------------------------------------------------------------------------------
1936 void vvMainWindow::CloseImage()
1938 CloseImage(DataTree->selectedItems()[0],0);
1940 //------------------------------------------------------------------------------
1942 //------------------------------------------------------------------------------
1943 void vvMainWindow::ReloadImage()
1945 ReloadImage(DataTree->selectedItems()[0],0);
1947 //------------------------------------------------------------------------------
1949 //------------------------------------------------------------------------------
1950 void vvMainWindow::SelectOverlayImage()
1952 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1954 //check if one overlay image is added
1955 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1956 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay") {
1957 QString error = "Cannot add more than one compared image\n";
1958 error += "Please remove first ";
1959 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1960 QMessageBox::information(this,tr("Problem adding compared image !"),error);
1964 QString Extensions = EXTENSIONS;
1965 Extensions += ";;All Files (*)";
1966 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image"),mInputPathName,Extensions);
1967 if (files.isEmpty())
1970 std::vector<std::string> vecFileNames;
1971 for (int i = 0; i < files.size(); i++) {
1972 vecFileNames.push_back(files[i].toStdString());
1974 AddOverlayImage(index,vecFileNames,vvImageReader::IMAGE);
1976 //------------------------------------------------------------------------------
1978 //------------------------------------------------------------------------------
1979 void vvMainWindow::AddOverlayImage(int index, std::vector<std::string> fileNames, vvImageReader::LoadedImageType type)
1981 QString file(fileNames[0].c_str());
1982 if (QFile::exists(file))
1984 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1985 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1986 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1987 reader->SetFileName(fileNames[0].c_str());
1988 reader->ReadImageInformation();
1989 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1990 int dimension = reader->GetNumberOfDimensions();
1991 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1992 vvProgressDialog progress("Opening " + file.toStdString());
1993 qApp->processEvents();
1995 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1996 if (mSlicerManagers[index]->SetOverlay(fileNames,dimension, component,type)) {
1997 //create an item in the tree with good settings
1998 QTreeWidgetItem *item = new QTreeWidgetItem();
1999 item->setData(0,Qt::UserRole,file.toStdString().c_str());
2000 item->setData(1,Qt::UserRole,tr("overlay"));
2001 QFileInfo fileinfo(file); //Do not show the path
2002 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
2003 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("overlay").c_str());
2004 qApp->processEvents();
2006 for (int j = 1; j <= 4; j++) {
2007 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2010 //Create the buttons for reload and close
2011 qApp->processEvents();
2012 QTreePushButton* cButton = new QTreePushButton;
2013 cButton->setItem(item);
2014 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2015 cButton->setToolTip(tr("close image"));
2016 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2017 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2018 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2020 QTreePushButton* rButton = new QTreePushButton;
2021 rButton->setItem(item);
2022 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2023 rButton->setToolTip(tr("reload image"));
2024 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2025 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2026 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2028 DataTree->topLevelItem(index)->setExpanded(1);
2029 DataTree->topLevelItem(index)->addChild(item);
2030 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2031 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2033 //set the id of the image
2034 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2035 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2037 qApp->processEvents();
2039 QApplication::restoreOverrideCursor();
2041 // Update the display to update, e.g., the sliders
2042 for(int i=0; i<4; i++)
2043 DisplaySliders(index, i);
2045 QApplication::restoreOverrideCursor();
2046 QString error = "Cannot import the new image.\n";
2047 error += mSlicerManagers[index]->GetLastError().c_str();
2048 QMessageBox::information(this,tr("Problem reading image !"),error);
2050 WindowLevelChanged();
2053 QMessageBox::information(this,tr("Problem reading Overlay !"),"File doesn't exist!");
2055 //------------------------------------------------------------------------------
2058 //------------------------------------------------------------------------------
2059 void vvMainWindow::AddROI(int index, QString file)
2062 // Get slice manager
2066 vvImageReader * mReader = new vvImageReader;
2067 mReader->SetInputFilename(filename.toStdString());
2068 mReader->Update(IMAGE);
2069 if (mReader->GetLastError().size() != 0) {
2070 std::cerr << "Error while reading " << filename.toStdString() << std::endl;
2071 QString error = "Cannot open file \n";
2072 error += mReader->GetLastError().c_str();
2073 QMessageBox::information(this,tr("Reading problem"),error);
2077 vvImage::Pointer roi = mReader->GetOutput();
2079 // Create roi in new tool
2080 vvToolStructureSetManager::AddImage(mCurrentSlicerManager, roi);
2083 //------------------------------------------------------------------------------
2085 //------------------------------------------------------------------------------
2086 void vvMainWindow::SelectFusionImage()
2088 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2090 //check if one fusion image is added
2091 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
2092 if ( (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") ||
2093 (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusionSequence") ) {
2094 QString error = "Cannot add more than one fusion image\n";
2095 error += "Please remove first ";
2096 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
2097 QMessageBox::information(this,tr("Problem adding fusion image !"),error);
2101 QString Extensions = EXTENSIONS;
2102 Extensions += ";;All Files (*)";
2103 QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
2104 if (!file.isEmpty())
2105 AddFusionImage(index,file);
2107 //------------------------------------------------------------------------------
2109 //------------------------------------------------------------------------------
2110 void vvMainWindow::ResetTransformationToIdentity()
2112 std::string actorType = DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString().toStdString();
2113 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2114 mSlicerManagers[index]->ResetTransformationToIdentity(actorType);
2117 //------------------------------------------------------------------------------
2119 //------------------------------------------------------------------------------
2120 void vvMainWindow::AddFusionImage(int index, QString file)
2122 if (QFile::exists(file))
2124 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2125 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
2126 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
2127 reader->SetFileName(file.toStdString().c_str());
2128 reader->ReadImageInformation();
2129 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
2131 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2132 vvProgressDialog progress("Opening fusion");
2133 qApp->processEvents();
2135 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2136 if (mSlicerManagers[index]->SetFusion(file.toStdString(),
2137 reader->GetNumberOfDimensions(), component)) {
2138 //create an item in the tree with good settings
2139 QTreeWidgetItem *item = new QTreeWidgetItem();
2140 item->setData(0,Qt::UserRole,file.toStdString().c_str());
2141 item->setData(1,Qt::UserRole,tr("fusion"));
2142 QFileInfo fileinfo(filename.c_str()); //Do not show the path
2143 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
2144 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusion").c_str());
2145 qApp->processEvents();
2147 for (int j = 1; j <= 4; j++) {
2148 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2151 //Create the buttons for reload and close
2152 qApp->processEvents();
2153 QTreePushButton* cButton = new QTreePushButton;
2154 cButton->setItem(item);
2155 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2156 cButton->setToolTip(tr("close image"));
2157 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2158 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2159 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2161 QTreePushButton* rButton = new QTreePushButton;
2162 rButton->setItem(item);
2163 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2164 rButton->setToolTip(tr("reload image"));
2165 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2166 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2167 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2169 DataTree->topLevelItem(index)->setExpanded(1);
2170 DataTree->topLevelItem(index)->addChild(item);
2171 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2172 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2174 //set the id of the image
2175 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2176 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2178 qApp->processEvents();
2180 QApplication::restoreOverrideCursor();
2182 QApplication::restoreOverrideCursor();
2183 QString error = "Cannot import the new image.\n";
2184 error += mSlicerManagers[index]->GetLastError().c_str();
2185 QMessageBox::information(this,tr("Problem reading image !"),error);
2188 QString error = "Cannot import the new image.\n";
2189 QMessageBox::information(this,tr("Problem reading image !"),error);
2193 QMessageBox::information(this,tr("Problem reading Fusion !"),"File doesn't exist!");
2195 //------------------------------------------------------------------------------
2198 //------------------------------------------------------------------------------
2199 void vvMainWindow::OpenField()
2201 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2202 //check if a vector field has already been added
2203 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
2204 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector") {
2205 QString error = "Cannot add more than one vector field\n";
2206 error += "Please remove first ";
2207 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
2208 QMessageBox::information(this,tr("Problem adding vector field!"),error);
2212 QString Extensions = "Images ( *.mhd)";
2213 Extensions += ";;Images ( *.mha)";
2214 Extensions += ";;VF Images ( *.vf)";
2215 Extensions += ";;nii Images ( *.nii)";
2216 Extensions += ";;nrrd Images ( *.nrrd)";
2217 Extensions += ";;nhdr Images ( *.nhdr)";
2218 Extensions += ";;All Files (*)";
2219 QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
2220 if (!file.isEmpty())
2221 AddField(file,index);
2223 //------------------------------------------------------------------------------
2226 //------------------------------------------------------------------------------
2227 void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
2229 //create an item in the tree with good settings
2230 QTreeWidgetItem *item = new QTreeWidgetItem();
2231 item->setData(0,Qt::UserRole,filename.toStdString().c_str());
2232 item->setData(1,Qt::UserRole,tr("vector"));
2233 QFileInfo fileinfo(filename); //Do not show the path
2234 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
2235 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("vector").c_str());
2236 qApp->processEvents();
2238 for (int j = 1; j <= 4; j++) {
2239 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2242 //Create the buttons for reload and close
2243 qApp->processEvents();
2244 QTreePushButton* cButton = new QTreePushButton;
2245 cButton->setItem(item);
2246 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2247 cButton->setToolTip(tr("close vector field"));
2248 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2249 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2250 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2252 QTreePushButton* rButton = new QTreePushButton;
2253 rButton->setItem(item);
2254 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2255 rButton->setToolTip(tr("reload vector field"));
2256 rButton->setEnabled(from_disk);
2257 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2258 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2259 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2261 DataTree->topLevelItem(index)->setExpanded(1);
2262 DataTree->topLevelItem(index)->addChild(item);
2263 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2264 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2266 //set the id of the image
2267 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2268 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2270 qApp->processEvents();
2272 QApplication::restoreOverrideCursor();
2274 //------------------------------------------------------------------------------
2277 //------------------------------------------------------------------------------
2278 void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
2280 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2281 vvSlicerManager* imageManager = mSlicerManagers[index];
2282 if (imageManager->SetVF(vf,file.toStdString())) {
2283 AddFieldEntry(file,index,false);
2285 QString error = "Cannot import the vector field for this image.\n";
2286 error += imageManager->GetLastError().c_str();
2287 QMessageBox::information(this,tr("Problem reading VF !"),error);
2289 QApplication::restoreOverrideCursor();
2291 //------------------------------------------------------------------------------
2294 //------------------------------------------------------------------------------
2295 void vvMainWindow::AddField(QString file,int index)
2297 if (QFile::exists(file)) {
2298 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2300 //init the progress events
2301 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2302 vvProgressDialog progress("Opening " + file.toStdString());
2303 qApp->processEvents();
2305 //read the vector and put it in the current mSlicerManager
2306 vvSlicerManager* imageManager = mSlicerManagers[index];
2307 qApp->processEvents();
2309 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2310 if (imageManager->SetVF(file.toStdString())) {
2311 imageManager->Render();
2312 AddFieldEntry(file,index,true);
2314 QApplication::restoreOverrideCursor();
2315 QString error = "Cannot import the vector field for this image.\n";
2316 error += imageManager->GetLastError().c_str();
2317 QMessageBox::information(this,tr("Problem reading VF !"),error);
2320 QMessageBox::information(this,tr("Problem reading VF !"),"File doesn't exist!");
2323 //------------------------------------------------------------------------------
2326 //------------------------------------------------------------------------------
2327 void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width, double r, double g, double b)
2329 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2330 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
2331 for (int i = 0; i < 4; i++) {
2332 mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
2333 mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
2334 mSlicerManagers[index]->GetSlicer(i)->SetVFWidth(width);
2335 mSlicerManagers[index]->GetSlicer(i)->SetVFColor(r,g,b);
2337 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
2339 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(0);
2343 //------------------------------------------------------------------------------
2346 //------------------------------------------------------------------------------
2347 void vvMainWindow::SetOverlayProperty(int color, int linked, double window, double level)
2349 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2350 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
2351 mSlicerManagers[index]->SetOverlayColor(color);
2352 mSlicerManagers[index]->SetColorMap(0);
2353 mSlicerManagers[index]->SetLinkOverlayWindowLevel(linked);
2354 mSlicerManagers[index]->SetOverlayColorWindow(window);
2355 mSlicerManagers[index]->SetOverlayColorLevel(level);
2356 mSlicerManagers[index]->Render();
2359 //------------------------------------------------------------------------------
2361 //------------------------------------------------------------------------------
2362 void vvMainWindow::SetFusionProperty(int opacity, int thresOpacity, int colormap,double window, double level, bool showLegend)
2364 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2365 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
2366 mSlicerManagers[index]->SetFusionColorMap(colormap);
2367 mSlicerManagers[index]->SetFusionOpacity(opacity);
2368 mSlicerManagers[index]->SetFusionThresholdOpacity(thresOpacity);
2369 mSlicerManagers[index]->SetFusionWindow(window);
2370 mSlicerManagers[index]->SetFusionLevel(level);
2371 mSlicerManagers[index]->SetFusionShowLegend(showLegend);
2372 mSlicerManagers[index]->SetColorMap(0);
2373 mSlicerManagers[index]->Render();
2376 //------------------------------------------------------------------------------
2379 //------------------------------------------------------------------------------
2380 void vvMainWindow::SelectFusionSequence()
2382 //get the index of the slicer manager of the main sequence (CT)
2383 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2384 //check if one overlay image is already associated
2385 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
2386 if ( (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") ||
2387 (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusionSequence") ) {
2388 QString error = "Cannot add more than one compared image\n";
2389 error += "Please remove first ";
2390 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
2391 QMessageBox::information(this,tr("Problem adding compared image !"),error);
2395 QString Extensions = EXTENSIONS;
2396 Extensions += ";;All Files (*)";
2397 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image sequence"),mInputPathName,Extensions);
2398 if (files.isEmpty())
2401 std::vector<std::string> vecFileNames;
2402 for (int i = 0; i < files.size(); i++) {
2403 vecFileNames.push_back(files[i].toStdString());
2406 //associate the secondary sequence (US) to the main one
2407 AddFusionSequence(index,vecFileNames,vvImageReader::MERGEDWITHTIME);
2409 //------------------------------------------------------------------------------
2412 //------------------------------------------------------------------------------
2413 void vvMainWindow::SelectFusionSequenceTemporalSignal() {
2415 //make sure the index is right?
2416 //in the end, I should attach the temporal data to the right sequence!
2417 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2418 //in case the other sequence got selected, make sure we select the primary sequence
2419 if ( (!mSlicerManagers[index]->GetSlicer(0)->GetFusion()) && mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()>=0 ) {
2420 index = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
2423 //open a dialog box to find a file
2424 QString Extensions = EXTENSIONS;
2425 Extensions += ";;All Files (*)";
2426 QString fileName = QFileDialog::getOpenFileName(this,tr("Load respiratory signal for fused sequence"),mInputPathName,Extensions);
2427 if (fileName.isNull())
2430 //read it as a vector of values
2431 std::vector<double> signal;
2432 //...TODO, look for itk functions that can do that... vnl in the worst case.
2433 signal.push_back(1);signal.push_back(2);
2435 //TODO: instead: if the loaded signal is longer, just crop it...
2436 //this allows loading only the first few frames when testing.
2437 //->maybe raise a message that this behavior may be unsafe...
2439 //if compatible with the fused image sequence (number of images = number of entries), enable the temporalSync
2440 if ( signal.size() >= mSlicerManagers[index]->GetFusionSequenceNbFrames()) {
2441 //for convenience, associate this sequence to both the current slicer manager, and to the linked one
2442 mSlicerManagers[index]->SetFusionSequenceTemporalSignal(signal);
2443 mSlicerManagers[ mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager() ]->SetFusionSequenceTemporalSignal(signal);
2444 overlayPanel->enableFusionSequenceTemporalSync();
2445 QMessageBox::information(this,tr("Adding signal"),"would add the signal from file: "+ fileName);
2447 else {//else, send a message to signal the failure...
2448 QString error = "The provided signal doesn't have the same duration as the sequence\n";
2449 error += "Ignoring file: " + fileName;
2450 QMessageBox::information(this,tr("Problem adding signal!"),error);
2455 //------------------------------------------------------------------------------
2458 //------------------------------------------------------------------------------
2459 //when this function is called index is the slicer manager index corresponding to the main sequence (CT)
2460 //the files behind fileNames points to the data for the secondary sequence
2461 void vvMainWindow::AddFusionSequence(int index, std::vector<std::string> fileNames, vvImageReader::LoadedImageType type)
2463 QString file(fileNames[0].c_str());
2464 if (QFile::exists(file))
2466 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2467 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
2468 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
2469 reader->SetFileName(fileNames[0].c_str());
2470 reader->ReadImageInformation();
2471 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
2472 int dimension = reader->GetNumberOfDimensions();
2473 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2474 vvProgressDialog progress("Opening " + file.toStdString());
2475 qApp->processEvents();
2477 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2479 if (mSlicerManagers[index]->SetFusionSequence(fileNames,dimension, component,type)) {
2480 //create an item in the tree with good settings
2481 QTreeWidgetItem *item = new QTreeWidgetItem();
2482 item->setData(0,Qt::UserRole,file.toStdString().c_str());
2483 item->setData(1,Qt::UserRole,tr("fusionSequence"));
2485 QFileInfo fileinfo(file); //Do not show the path
2486 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
2487 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusionSequence").c_str());
2488 qApp->processEvents();
2489 for (int j = 1; j <= 4; j++) {
2490 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2493 //Create the buttons for reload and close
2494 qApp->processEvents();
2495 QTreePushButton* cButton = new QTreePushButton;
2496 cButton->setItem(item);
2497 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2498 cButton->setToolTip(tr("close image"));
2499 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2500 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2501 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2503 QTreePushButton* rButton = new QTreePushButton;
2504 rButton->setItem(item);
2505 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2506 rButton->setToolTip(tr("reload image"));
2507 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2508 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2509 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2511 DataTree->topLevelItem(index)->setExpanded(1);
2512 DataTree->topLevelItem(index)->addChild(item);
2513 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2514 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2516 //store the original transform matrix
2517 int indexParent = GetSlicerIndexFromItem( DataTree->topLevelItem(index) );
2518 mSlicerManagers[indexParent]->SetFusionSequenceMainTransformMatrix( mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[0]->GetMatrix() );
2520 //set the id of the image
2521 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2522 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2524 qApp->processEvents();
2528 QApplication::restoreOverrideCursor();
2529 // Update the display to update, e.g., the sliders
2530 for(int i=0; i<4; i++)
2531 DisplaySliders(index, i);
2534 //This loads the secondary sequence (US) as an independent sequence
2535 LoadImages(fileNames, type);
2536 //reset the transforms to identiy
2537 for (unsigned i=0 ; i<mSlicerManagers.back()->GetImage()->GetTransform().size() ; i++) {
2538 mSlicerManagers.back()->GetImage()->GetTransform()[i]->Identity();
2539 mSlicerManagers.back()->GetImage()->GetTransform()[i]->Update();
2542 //automatically link both images...
2543 AddLink(mSlicerManagers[indexParent]->GetId().c_str(), mSlicerManagers.back()->GetId().c_str(), false);
2545 //tie the main and secondary sequences by raising flags and informing each another of their respective SlicerManager indices
2546 mSlicerManagers[indexParent]->SetFusionSequenceIndexOfLinkedManager(mSlicerManagers.size()-1);
2547 mSlicerManagers[indexParent]->SetFusionSequenceInvolvmentCode(0); //main sequence
2548 mSlicerManagers.back()->SetFusionSequenceIndexOfLinkedManager(indexParent);
2549 mSlicerManagers.back()->SetFusionSequenceInvolvmentCode(1); //secondary sequence
2552 QApplication::restoreOverrideCursor();
2553 QString error = "Cannot import the new image.\n";
2554 error += mSlicerManagers[index]->GetLastError().c_str();
2555 QMessageBox::information(this,tr("Problem reading image !"),error);
2557 WindowLevelChanged();
2560 QMessageBox::information(this,tr("Problem reading fusion sequence !"),"File doesn't exist!");
2565 //------------------------------------------------------------------------------
2568 //------------------------------------------------------------------------------
2569 //fusionSequenceFrameIndex and fusionSequenceNbFrames are relative to the secondary sequence (US)
2570 void vvMainWindow::SetFusionSequenceProperty(int fusionSequenceFrameIndex, bool spatialSyncFlag, unsigned int fusionSequenceNbFrames, bool temporalSyncFlag)
2572 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2574 //check if the focus moved to the linked sequence, and in this case, select the master sequence instead
2575 if (!mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) {
2576 index = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
2579 int secondaryIndex = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
2580 if ( (!mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) ||
2581 (!mSlicerManagers[secondaryIndex]->IsSecondarySequenceOfFusionSequence()) )
2582 {return;} //this should never happen, raise an exception?
2584 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
2585 int indexParent = GetSlicerIndexFromItem( DataTree->topLevelItem(index) );
2586 //check whether this really makes sense to look at 'parentIndex'...
2587 std::cout<<"index = "<<index<<", indexParent = "<< indexParent<<std::endl;
2589 //if the spatialSync button is unchecked, then reposition the parent sequence (CT) in its original coordinate frame
2590 if ( (!spatialSyncFlag) && (mSlicerManagers[index]->GetFusionSequenceSpatialSyncFlag()) ) {
2591 for ( unsigned i=0 ; i<mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform().size() ; i++ ) {
2592 mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->SetMatrix( mSlicerManagers[index]->GetFusionSequenceMainTransformMatrix() );
2593 mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->Update();
2596 for (int i=0; i<mSlicerManagers[indexParent]->GetNumberOfSlicers(); i++) {
2597 mSlicerManagers[indexParent]->GetSlicer(i)->ForceUpdateDisplayExtent();
2598 mSlicerManagers[indexParent]->GetSlicer(i)->Render();
2603 //update the property values in the slicer manager
2604 mSlicerManagers[index]->SetFusionSequenceLength(fusionSequenceNbFrames);
2605 mSlicerManagers[index]->SetFusionSequenceSpatialSyncFlag(spatialSyncFlag);
2606 mSlicerManagers[index]->SetFusionSequenceSpatialSyncFlag(temporalSyncFlag);
2607 mSlicerManagers[index]->SetFusionSequenceFrameIndex(fusionSequenceFrameIndex);
2609 //show the right frame of the US sequence
2610 mSlicerManagers[index]->SetFusionSequenceTSlice(fusionSequenceFrameIndex);
2611 //update the TSlice of the linked sequence if possible
2612 mSlicerManagers[secondaryIndex]->SetTSlice(fusionSequenceFrameIndex, true);
2614 //update the horizontal sliders of the main window
2615 overlayPanel->updateFusionSequenceSliderValueFromWindow(fusionSequenceFrameIndex, false);
2617 if (spatialSyncFlag) { //reslice the CT
2619 if (temporalSyncFlag) { //do the temporal synchronisation
2620 //TODO: add the temporal synchronisation stuff
2621 //if the button is checked, get the phase of the requested US frame from the available signal
2622 //and select the corresponding one in the CT. (check the one just before, and the one just after, and select the closest)
2624 //TODO: do it also the other way around, when modifying the time index related to CT, select a close frame
2625 //this should not be done here directly, but the code should be inspired from the one here
2626 //->find a good US frame such that when calling this function with this US frame, it produces the expected result
2629 //TODO: select the right CT image to display
2630 int mainSequenceFrameIndex=0;
2631 //estimate the TSlice to set to the CT
2634 mSlicerManagers[index]->SetTSlice(mainSequenceFrameIndex, false);
2638 //Set the transform matrix of the parent sequence (typically CT / 4DCT)
2639 vtkSmartPointer<vtkMatrix4x4> tmpMat = vtkSmartPointer<vtkMatrix4x4>::New();
2640 vtkMatrix4x4::Invert( mSlicerManagers[index]->GetFusionSequenceInitialTransformMatrixAtFrame(fusionSequenceFrameIndex), tmpMat );
2641 for ( unsigned i=0 ; i<mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform().size() ; i++ ) {
2642 mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->SetMatrix( mSlicerManagers[index]->GetFusionSequenceMainTransformMatrix() );
2643 mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->PreMultiply();
2644 mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->Concatenate( tmpMat );
2645 mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->Update();
2648 for (int i=0; i<mSlicerManagers[indexParent]->GetNumberOfSlicers(); i++) {
2649 mSlicerManagers[indexParent]->GetSlicer(i)->ForceUpdateDisplayExtent();
2650 mSlicerManagers[indexParent]->GetSlicer(i)->Render();
2657 //------------------------------------------------------------------------------
2660 //------------------------------------------------------------------------------
2661 void vvMainWindow::SaveAs()
2663 if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
2664 QMessageBox::warning(this,tr("Unsupported type"),tr("Sorry, saving a vector field is unsupported for the moment"));
2668 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2669 int dimension = mSlicerManagers[index]->GetDimension();
2670 QStringList OutputListeFormat;
2671 OutputListeFormat.clear();
2672 if (dimension == 1) {
2673 OutputListeFormat.push_back(".mhd");
2674 OutputListeFormat.push_back(".mha");
2676 if (dimension == 2) {
2677 OutputListeFormat.push_back(".bmp");
2678 OutputListeFormat.push_back(".png");
2679 OutputListeFormat.push_back(".jpeg");
2680 OutputListeFormat.push_back(".tif");
2681 OutputListeFormat.push_back(".mhd");
2682 OutputListeFormat.push_back(".mha");
2683 OutputListeFormat.push_back(".hdr");
2684 OutputListeFormat.push_back(".vox");
2685 } else if (dimension == 3) {
2686 OutputListeFormat.push_back(".mhd");
2687 OutputListeFormat.push_back(".mha");
2688 OutputListeFormat.push_back(".nii");
2689 OutputListeFormat.push_back(".nrrd");
2690 OutputListeFormat.push_back(".nhdr");
2691 OutputListeFormat.push_back(".hdr");
2692 OutputListeFormat.push_back(".vox");
2693 } else if (dimension == 4) {
2694 OutputListeFormat.push_back(".mhd");
2695 OutputListeFormat.push_back(".mha");
2696 OutputListeFormat.push_back(".nii");
2697 OutputListeFormat.push_back(".nrrd");
2698 OutputListeFormat.push_back(".nhdr");
2700 QString Extensions = "AllFiles(*.*)";
2701 for (int i = 0; i < OutputListeFormat.count(); i++) {
2702 Extensions += ";;Images ( *";
2703 Extensions += OutputListeFormat[i];
2706 QString fileName = QFileDialog::getSaveFileName(this,
2708 mSlicerManagers[index]->GetFileName().c_str(),
2710 if (!fileName.isEmpty()) {
2711 std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
2712 if (OutputListeFormat.contains(
2713 fileformat.c_str())) {
2714 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2715 std::string action = "Saving";
2716 vvProgressDialog progress("Saving "+fileName.toStdString());
2717 qApp->processEvents();
2718 vvImageWriter::Pointer writer = vvImageWriter::New();
2719 writer->SetOutputFileName(fileName.toStdString());
2720 writer->SetInput(mSlicerManagers[index]->GetImage());
2722 // Check on transform and prompt user
2723 writer->SetSaveTransform(false);
2725 for(int i=0; i<4; i++)
2726 for(int j=0; j<4; j++) {
2727 // TODO SR and BP: check on the list of transforms and not the first only
2728 double elt = mSlicerManagers[index]->GetImage()->GetTransform()[0]->GetMatrix()->GetElement(i,j);
2735 QString warning = "The image has an associated linear transform. Do you want to save it along?";
2736 QMessageBox msgBox(QMessageBox::Warning, tr("Save transform"), warning, 0, this);
2737 msgBox.addButton(tr("Yes"), QMessageBox::AcceptRole);
2738 msgBox.addButton(tr("No"), QMessageBox::RejectRole);
2739 if (msgBox.exec() == QMessageBox::AcceptRole)
2740 writer->SetSaveTransform(true);
2744 QApplication::restoreOverrideCursor();
2745 if (writer->GetLastError().size()) {
2746 QString error = "Saving did not succeed\n";
2747 error += writer->GetLastError().c_str();
2748 QMessageBox::information(this,tr("Saving Problem"),error);
2752 QString error = fileformat.c_str();
2753 if (error.isEmpty())
2754 error += "no file format specified !";
2756 error += " format unknown !!!\n";
2757 QMessageBox::information(this,tr("Saving Problem"),error);
2762 //------------------------------------------------------------------------------
2764 //------------------------------------------------------------------------------
2765 void vvMainWindow::SaveCurrentState()
2767 QString Extensions = "XML Files(*.xml)";
2768 QString fileName = QFileDialog::getSaveFileName(this,
2769 tr("Save Current Window State"),
2773 SaveCurrentStateAs(fileName.toStdString());
2775 //------------------------------------------------------------------------------
2777 //------------------------------------------------------------------------------
2778 void vvMainWindow::SaveCurrentStateAs(const std::string& stateFile)
2780 vvSaveState save_state;
2781 save_state.Run(this, stateFile);
2784 //------------------------------------------------------------------------------
2785 void vvMainWindow::ReadSavedState()
2787 QString Extensions = "XML Files(*.xml)";
2788 QString fileName = QFileDialog::getOpenFileName(this,
2789 tr("Load Window State"),
2793 ReadSavedStateFile(fileName.toStdString());
2795 //------------------------------------------------------------------------------
2797 //------------------------------------------------------------------------------
2798 void vvMainWindow::ReadSavedStateFile(const std::string& stateFile)
2800 vvReadState read_state;
2801 read_state.Run(this, stateFile);
2803 //------------------------------------------------------------------------------
2805 //------------------------------------------------------------------------------
2806 void vvMainWindow::LinkAllImages()
2808 linkPanel->linkAll();
2811 //------------------------------------------------------------------------------
2812 void vvMainWindow::AddLink(QString image1,QString image2,bool fromPanel)
2815 // delegate to linkPanel if call came from elsewhere...
2816 linkPanel->addLinkFromIds(image1, image2);
2820 unsigned int sm1 = 0;
2821 unsigned int sm2 = 0;
2823 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2824 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2825 mSlicerManagers[i]->AddLink(image2.toStdString());
2828 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2829 mSlicerManagers[i]->AddLink(image1.toStdString());
2834 if (linkPanel->isLinkAll()) {
2835 emit UpdateLinkedNavigation(mSlicerManagers[sm1]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2836 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2838 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[sm1], mSlicerManagers[sm1]->GetSlicer(0));
2842 //------------------------------------------------------------------------------
2845 //------------------------------------------------------------------------------
2846 void vvMainWindow::RemoveLink(QString image1,QString image2)
2848 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2849 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2850 mSlicerManagers[i]->RemoveLink(image2.toStdString());
2852 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2853 mSlicerManagers[i]->RemoveLink(image1.toStdString());
2857 //------------------------------------------------------------------------------
2859 //------------------------------------------------------------------------------
2860 void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset)
2862 if(mSlicerManagers.size()==1)
2866 while(sm != mSlicerManagers[index])
2868 index = (index+offset+mSlicerManagers.size()) % mSlicerManagers.size();
2870 QTreeWidgetItem* item = GetItemFromSlicerManager(mSlicerManagers[index]);
2871 item->setData(slicer+1,Qt::CheckStateRole,2); //change checkbox
2872 CurrentImageChanged(mSlicerManagers[index]->GetId()); //select new image
2873 DisplayChanged(item,slicer+1);
2875 //------------------------------------------------------------------------------
2876 void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
2878 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2879 if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
2881 if (mSlicerManagers[i]->IsInvolvedInFusionSequence()) {
2882 //if the slicerManager is involved in a fusionSequence as the secondary sequence, then update the slider position in the overlay panel and everything accordingly
2883 if (mSlicerManagers[i]->IsSecondarySequenceOfFusionSequence()) { overlayPanel->updateFusionSequenceSliderValueFromWindow(value, true); }
2884 else { //if this is the primary sequence that has been modified
2885 if (mSlicerManagers[i]->GetFusionSequenceTemporalSyncFlag()) {
2886 //TODO: if temporal sync is active
2887 //estimate a corresponding time index for the secondary (US) sequence, and update it accordingly.
2888 int estimatedValue=0;
2889 overlayPanel->updateFusionSequenceSliderValueFromWindow(estimatedValue, true);
2894 for (int j = 0; j < 4; j++) {
2895 mSlicerManagers[i]->SetTSliceInSlicer(value,j);
2897 mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
2902 //------------------------------------------------------------------------------
2905 //------------------------------------------------------------------------------
2906 void vvMainWindow::NOHorizontalSliderMoved()
2908 // if (mCurrentTime == NOHorizontalSlider->value()) return;
2909 HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
2910 // mCurrentTime = NOHorizontalSlider->value();
2912 //------------------------------------------------------------------------------
2915 //------------------------------------------------------------------------------
2916 void vvMainWindow::NEHorizontalSliderMoved()
2918 // if (mCurrentTime == NEHorizontalSlider->value()) return;
2919 HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
2920 // mCurrentTime = NEHorizontalSlider->value();
2922 //------------------------------------------------------------------------------
2925 //------------------------------------------------------------------------------
2926 void vvMainWindow::SOHorizontalSliderMoved()
2928 // if (mCurrentTime == SOHorizontalSlider->value()) return;
2929 HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
2930 // mCurrentTime = SOHorizontalSlider->value();
2932 //------------------------------------------------------------------------------
2935 //------------------------------------------------------------------------------
2936 void vvMainWindow::SEHorizontalSliderMoved()
2938 // if (mCurrentTime == SEHorizontalSlider->value()) return;
2939 HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
2940 // mCurrentTime = SEHorizontalSlider->value();
2942 //------------------------------------------------------------------------------
2944 //------------------------------------------------------------------------------
2945 void vvMainWindow::NOVerticalSliderChanged()
2947 static int value=-1;
2948 if (value == NOVerticalSlider->value()) return;
2949 else value = NOVerticalSlider->value();
2950 // int value = NOVerticalSlider->value();
2951 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2952 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2953 if (mSlicerManagers[i]->GetSlicer(0)->GetSlice() != value) {
2954 mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
2955 mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
2957 // If nor Update/Render -> slider not work
2958 // only render = ok navigation, but for contour Update needed but slower ?
2960 mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
2961 //mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2967 //------------------------------------------------------------------------------
2970 //------------------------------------------------------------------------------
2971 void vvMainWindow::NEVerticalSliderChanged()
2973 static int value=-1;
2974 if (value == NEVerticalSlider->value()) return;
2975 else value = NEVerticalSlider->value();
2976 // int value = NEVerticalSlider->value();
2977 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2978 if (DataTree->topLevelItem(i)->data(COLUMN_UR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2979 if (mSlicerManagers[i]->GetSlicer(1)->GetSlice() != value) {
2980 mSlicerManagers[i]->GetSlicer(1)->SetSlice(value);
2981 mSlicerManagers[i]->VerticalSliderHasChanged(1, value);
2982 mSlicerManagers[i]->UpdateSlice(1);
2983 //mSlicerManagers[i]->GetSlicer(1)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2989 //------------------------------------------------------------------------------
2992 //------------------------------------------------------------------------------
2993 void vvMainWindow::SOVerticalSliderChanged()
2995 static int value=-1;
2996 if (value == SOVerticalSlider->value()) return;
2997 else value = SOVerticalSlider->value();
2998 //int value = SOVerticalSlider->value();
2999 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
3000 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1) {
3001 if (mSlicerManagers[i]->GetSlicer(2)->GetSlice() != value) {
3002 mSlicerManagers[i]->GetSlicer(2)->SetSlice(value);
3003 mSlicerManagers[i]->VerticalSliderHasChanged(2, value);
3004 mSlicerManagers[i]->UpdateSlice(2);
3005 //mSlicerManagers[i]->GetSlicer(2)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
3007 // else { DD("avoid SOVerticalSlider slicer update"); }
3012 //------------------------------------------------------------------------------
3015 //------------------------------------------------------------------------------
3016 void vvMainWindow::SEVerticalSliderChanged()
3018 static int value=-1;
3019 if (value == SEVerticalSlider->value()) return;
3020 else value = SEVerticalSlider->value();
3021 // int value = SEVerticalSlider->value();
3022 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
3023 if (DataTree->topLevelItem(i)->data(COLUMN_DR_VIEW,Qt::CheckStateRole).toInt() > 1) {
3024 if (mSlicerManagers[i]->GetSlicer(3)->GetSlice() != value) {
3025 mSlicerManagers[i]->GetSlicer(3)->SetSlice(value);
3026 mSlicerManagers[i]->VerticalSliderHasChanged(3, value);
3027 mSlicerManagers[i]->UpdateSlice(3);
3028 //mSlicerManagers[i]->GetSlicer(3)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
3034 //------------------------------------------------------------------------------
3037 //------------------------------------------------------------------------------
3038 void vvMainWindow::UpdateSlice(int slicer, int slice)
3040 // DD("vvMainWindow::UpdateSlice");
3044 // if (slice != NOVerticalSlider->value())
3045 NOVerticalSlider->setValue(slice);
3048 NEVerticalSlider->setValue(slice);
3051 SOVerticalSlider->setValue(slice);
3054 SEVerticalSlider->setValue(slice);
3058 // DD("vvMainWindow:UpdateSlice END");
3060 //------------------------------------------------------------------------------
3063 //------------------------------------------------------------------------------
3064 void vvMainWindow::UpdateTSlice(int slicer, int slice)
3068 NOHorizontalSlider->setValue(slice);
3071 NEHorizontalSlider->setValue(slice);
3074 SOHorizontalSlider->setValue(slice);
3077 SEHorizontalSlider->setValue(slice);
3081 //------------------------------------------------------------------------------
3084 //------------------------------------------------------------------------------
3085 void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax)
3087 //int position = int((min+max)/2);
3088 int position = mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(slicer)->GetSlice();
3090 NOVerticalSlider->setRange(min,max);
3091 NOHorizontalSlider->setRange(tmin,tmax);
3092 NOVerticalSlider->setValue(position);
3093 } else if (slicer == 1) {
3094 NEVerticalSlider->setRange(min,max);
3095 NEHorizontalSlider->setRange(tmin,tmax);
3096 NEVerticalSlider->setValue(position);
3097 } else if (slicer == 2) {
3098 SOVerticalSlider->setRange(min,max);
3099 SOHorizontalSlider->setRange(tmin,tmax);
3100 SOVerticalSlider->setValue(position);
3101 } else if (slicer == 3) {
3102 SEVerticalSlider->setRange(min,max);
3103 SEHorizontalSlider->setRange(tmin,tmax);
3104 SEVerticalSlider->setValue(position);
3107 //------------------------------------------------------------------------------
3110 //------------------------------------------------------------------------------
3111 void vvMainWindow::SaveNOScreenshot()
3113 SaveScreenshot(NOViewWidget);
3115 //------------------------------------------------------------------------------
3118 //------------------------------------------------------------------------------
3119 void vvMainWindow::SaveNEScreenshot()
3121 SaveScreenshot(NEViewWidget);
3123 //------------------------------------------------------------------------------
3126 //------------------------------------------------------------------------------
3127 void vvMainWindow::SaveSOScreenshot()
3129 SaveScreenshot(SOViewWidget);
3131 //------------------------------------------------------------------------------
3134 //------------------------------------------------------------------------------
3135 void vvMainWindow::SaveSEScreenshot()
3137 SaveScreenshot(SEViewWidget);
3139 //------------------------------------------------------------------------------
3142 //------------------------------------------------------------------------------
3143 void vvMainWindow::SaveScreenshotAllSlices()
3145 QVTKWidget *widget = NOViewWidget;
3147 int index = 0;// GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
3148 vvSlicerManager * SM = mSlicerManagers[index];
3149 vvImage * image = SM->GetImage();
3150 vvSlicer * slicer = SM->GetSlicer(0);
3151 int orientation = slicer->GetOrientation();
3152 int nbSlices = image->GetSize()[orientation];
3153 vtkSmartPointer<vtkRenderWindow> renderWindow = widget->GetRenderWindow();
3155 // Select filename base
3156 QString filename = QFileDialog::getSaveFileName(this,
3157 tr("Save As (filename will be completed by slice number)"),
3158 itksys::SystemTools::GetFilenamePath(mSlicerManagers[index]->GetFileName()).c_str(),
3159 "Images( *.png);;Images( *.jpg)");
3162 for(int i=0; i<nbSlices; i++) {
3164 slicer->SetSlice(i); // -> change the slice of the current slicer
3165 SM->UpdateSlice(0); // --> this one emit UpdateSlice
3166 QCoreApplication::flush(); // -> needed to force display of contours
3169 vtkSmartPointer<vtkWindowToImageFilter> windowToImageFilter = vtkSmartPointer<vtkWindowToImageFilter>::New();
3170 windowToImageFilter->SetInput(renderWindow);
3171 windowToImageFilter->SetMagnification(1);
3172 windowToImageFilter->SetInputBufferTypeToRGBA(); //also record the alpha (transparency) channel
3173 windowToImageFilter->Update();
3175 vtkSmartPointer<vtkPNGWriter> writer = vtkSmartPointer<vtkPNGWriter>::New();
3176 std::string fn = itksys::SystemTools::GetFilenameWithoutLastExtension(filename.toStdString());
3177 std::string num = clitk::toString(i);
3178 if (i<10) num = "0"+num;
3179 if (i<100) num = "0"+num;
3180 if (i<1000) num = "0"+num;
3182 fn = itksys::SystemTools::GetFilenamePath(filename.toStdString()) + "/"+ fn
3183 + "_" + num + itksys::SystemTools::GetFilenameLastExtension(filename.toStdString());
3184 writer->SetFileName(fn.c_str());
3185 writer->SetInput(windowToImageFilter->GetOutput());
3189 //------------------------------------------------------------------------------
3192 //------------------------------------------------------------------------------
3193 void vvMainWindow::SaveScreenshot(QVTKWidget *widget)
3195 QString Extensions = "Images( *.png);;";
3196 Extensions += "Images( *.jpg);;";
3197 Extensions += "Images( *.bmp);;";
3198 Extensions += "Images( *.tif);;";
3199 Extensions += "Images( *.ppm)";
3200 #if defined(VTK_USE_FFMPEG_ENCODER) || defined(VTK_USE_VIDEO_FOR_WINDOWS)
3201 Extensions += ";;Video( *.avi)";
3203 #ifdef VTK_USE_MPEG2_ENCODER
3204 Extensions += ";;Video( *.mpg)";
3206 #ifdef CLITK_EXPERIMENTAL
3207 Extensions += ";;Video( *.gif)";
3210 int smIndex=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
3211 QString fileName = QFileDialog::getSaveFileName(this,
3213 itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(),
3216 if (!fileName.isEmpty()) {
3217 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
3218 w2i->SetInput(widget->GetRenderWindow());
3220 vtkImageData *image = w2i->GetOutput();
3222 std::string ext(itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString()));
3225 vtkImageWriter *imgwriter = NULL;
3227 imgwriter = vtkBMPWriter::New();
3228 else if (ext==".tif")
3229 imgwriter = vtkTIFFWriter::New();
3230 else if (ext==".ppm")
3231 imgwriter = vtkPNMWriter::New();
3232 else if (ext==".png")
3233 imgwriter = vtkPNGWriter::New();
3234 else if (ext==".jpg")
3235 imgwriter = vtkJPEGWriter::New();
3237 // Snapshot image if not null
3238 if(imgwriter!=NULL) {
3239 imgwriter->SetInput(image);
3240 imgwriter->SetFileName(fileName.toStdString().c_str());
3246 vtkGenericMovieWriter *vidwriter = NULL;
3247 #if CLITK_EXPERIMENTAL == 1
3249 vvAnimatedGIFWriter *gif = vvAnimatedGIFWriter::New();
3254 int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
3255 tr("FPS:"), 5, 0, 1000, 1, &ok);
3260 int loops = QInputDialog::getInteger(this, tr("Loops"),
3261 tr("Number of loops (0 means infinite):"), 0, 0, 1000000000, 1, &ok);
3263 gif->SetLoops(loops);
3266 QString msg = "Would you like to activate dithering?";
3267 QMessageBox msgBox(QMessageBox::Question, tr("Dithering"),msg, 0, this);
3268 msgBox.addButton(tr("Yes"), QMessageBox::AcceptRole);
3269 msgBox.addButton(tr("No"), QMessageBox::RejectRole);
3270 gif->SetDither(msgBox.exec() == QMessageBox::AcceptRole);
3273 #ifdef VTK_USE_VIDEO_FOR_WINDOWS
3275 vtkAVIWriter *mpg = vtkAVIWriter::New();
3279 int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
3280 tr("FPS:"), 5, 0, 1024, 1, &ok);
3286 #ifdef VTK_USE_FFMPEG_ENCODER
3288 vtkFFMPEGWriter *mpg = vtkFFMPEGWriter::New();
3292 int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
3293 tr("FPS:"), 5, 0, 1024, 1, &ok);
3297 mpg->SetBitRateTolerance(int(ceil(12.0*1024*1024/fps)));
3300 #ifdef VTK_USE_MPEG2_ENCODER
3302 vtkMPEG2Writer *mpg = vtkMPEG2Writer::New();
3307 // Take video if not null
3308 if(vidwriter!=NULL){
3309 vidwriter->SetInput(image);
3310 vidwriter->SetFileName(fileName.toStdString().c_str());
3312 int nSlice = mSlicerManagers[smIndex]->GetSlicer(0)->GetTMax();
3313 for(int i=0; i<=nSlice; i++) {
3314 mSlicerManagers[smIndex]->SetNextTSlice(0);
3315 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
3316 w2i->SetInput(widget->GetRenderWindow());
3318 vidwriter->SetInput(w2i->GetOutput());
3322 vidwriter->Delete();
3326 QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
3329 //------------------------------------------------------------------------------
3332 //------------------------------------------------------------------------------
3333 void vvMainWindow::GoToCursor()
3335 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
3336 for (int column = 1; column < 5; column++) {
3337 if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1) {
3338 double* cursorPos = mSlicerManagers[index]->GetSlicer(column-1)->GetCursorPosition();
3339 mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
3340 cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
3341 mSlicerManagers[index]->UpdateViews(1,column-1);
3342 mSlicerManagers[index]->UpdateLinked(column-1);
3347 //------------------------------------------------------------------------------
3349 //------------------------------------------------------------------------------
3350 void vvMainWindow::PlayPause()
3354 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_play.png")));
3358 int image_number=DataTree->topLevelItemCount();
3360 for (int i=0; i<image_number; i++)
3361 if (mSlicerManagers[i]->GetSlicer(0)->GetTMax() > 0) {
3367 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
3368 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
3372 //------------------------------------------------------------------------------
3374 //------------------------------------------------------------------------------
3375 void vvMainWindow::PlayNext()
3377 if (playMode && !this->isHidden()) {
3378 int image_number=DataTree->topLevelItemCount();
3379 ///Only play one slicer per SM, and only if the SM is being displayed
3380 for (int i=0; i<image_number; i++)
3381 for (int j=0; j<4; j++)
3382 if (mSlicerManagers[i]->GetSlicer(0)->GetTMax() > 0 &&
3383 DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
3384 mSlicerManagers[i]->SetNextTSlice(j);
3387 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
3390 //------------------------------------------------------------------------------
3392 void vvMainWindow::ShowLastImage()
3394 if (mSlicerManagers.size() > 1) {
3395 QTreeWidgetItem * item=DataTree->topLevelItem(DataTree->topLevelItemCount()-1);
3396 CurrentImageChanged(mSlicerManagers.back()->GetId()); //select new image
3397 item->setData(1,Qt::CheckStateRole,2); //show the new image in the first panel
3398 DisplayChanged(item,1);
3402 //------------------------------------------------------------------------------
3403 void vvMainWindow::UpdateRenderWindows()
3405 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
3406 mSlicerManagers[i]->GetSlicer(0)->UpdateLandmarks();
3407 mSlicerManagers[i]->GetSlicer(1)->UpdateLandmarks();
3408 mSlicerManagers[i]->GetSlicer(2)->UpdateLandmarks();
3409 mSlicerManagers[i]->GetSlicer(3)->UpdateLandmarks();
3411 if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
3412 if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
3413 if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
3414 if (SEViewWidget->GetRenderWindow()) SEViewWidget->GetRenderWindow()->Render();
3416 //------------------------------------------------------------------------------
3418 //------------------------------------------------------------------------------
3419 void vvMainWindow::SegmentationOnCurrentImage()
3421 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
3423 vvSegmentationDialog segmentation;
3424 segmentation.SetImage(mSlicerManagers[index]->GetSlicer(0)->GetImage());
3425 segmentation.exec();
3427 //------------------------------------------------------------------------------
3429 void vvMainWindow::SurfaceViewerLaunch()
3431 vvSurfaceViewerDialog surfaceViewer;
3432 surfaceViewer.exec();
3434 //------------------------------------------------------------------------------
3437 //------------------------------------------------------------------------------
3438 int vvMainWindow::GetImageDuplicateFilenameNumber(std::string filename)
3441 for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
3442 vvSlicerManager * v = mSlicerManagers[l];
3443 if (v->GetBaseFileName() ==
3444 vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
3445 number = std::max(number, v->GetBaseFileNameNumber()+1);
3450 //------------------------------------------------------------------------------
3453 //------------------------------------------------------------------------------
3454 vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
3456 // Change filename if another image exist with the same name
3457 int number = GetImageDuplicateFilenameNumber(filename);
3459 // Create new SliceManager
3460 vvSlicerManager* slicer_manager = new vvSlicerManager(4);
3461 slicer_manager->SetImage(image);//, IMAGE, number);
3462 // filename = filename+"_"+clitk::toString(number);
3463 slicer_manager->SetFilename(filename, number);
3464 mSlicerManagers.push_back(slicer_manager);
3466 //create an item in the tree with good settings
3467 QTreeWidgetItem *item = new QTreeWidgetItem();
3468 item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
3469 item->setData(1,Qt::UserRole,tr("image"));
3470 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,slicer_manager->GetFileName().c_str());//filename.c_str());
3471 qApp->processEvents();
3473 for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1);
3475 //Create the buttons for reload and close
3476 qApp->processEvents();
3477 QTreePushButton* cButton = new QTreePushButton;
3478 cButton->setItem(item);
3479 cButton->setColumn(COLUMN_CLOSE_IMAGE);
3480 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
3481 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
3482 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
3484 QTreePushButton* rButton = new QTreePushButton;
3485 rButton->setItem(item);
3486 rButton->setColumn(COLUMN_RELOAD_IMAGE);
3487 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
3488 rButton->setEnabled(0);
3489 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
3490 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
3492 DataTree->addTopLevelItem(item);
3493 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
3494 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
3496 //set the id of the image
3497 QString id = QDir::current().absoluteFilePath(slicer_manager->GetFileName().c_str()) + QString::number(mSlicerManagers.size()-1);
3498 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
3499 mSlicerManagers.back()->SetId(id.toStdString());
3501 linkPanel->addImage(slicer_manager->GetFileName().c_str()// filename
3502 , id.toStdString());
3504 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
3505 this, SLOT(CurrentImageChanged(std::string)));
3506 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
3507 this, SLOT(CurrentPickedImageChanged(std::string)));
3508 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
3509 this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
3510 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
3511 this, SLOT(VectorChanged(int,double,double,double, double)));
3512 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
3513 this, SLOT(OverlayChanged(int,double,double)));
3514 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
3515 this, SLOT(FusionChanged(int,double)));
3516 //connect(mSlicerManagers.back(), SIGNAL(UpdateFusionSequence(int, bool, unsigned int)),
3517 // this, SLOT(FusionSequenceChanged(int, bool, unsigned int)));
3518 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
3519 this,SLOT(WindowLevelChanged()));
3520 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
3521 this,SLOT(UpdateSlice(int,int)));
3522 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
3523 this,SLOT(UpdateTSlice(int, int)));
3524 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
3525 this,SLOT(ImageInfoChanged()));
3526 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
3527 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
3528 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
3529 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
3530 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
3531 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
3532 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
3533 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
3534 connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
3538 qApp->processEvents();
3542 qApp->processEvents();
3546 return slicer_manager;
3548 //------------------------------------------------------------------------------
3551 //------------------------------------------------------------------------------
3552 void vvMainWindow::UpdateCurrentSlicer()
3555 if (DataTree->selectedItems().size() > 0) {
3556 index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
3558 mSlicerManagerCurrentIndex = index;
3560 //------------------------------------------------------------------------------