1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://www.centreleonberard.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ===========================================================================**/
20 #include <QMessageBox>
21 #include <QInputDialog>
23 #include "QTreePushButton.h"
27 #include "vvMainWindow.h"
28 #include "vvHelpDialog.h"
29 #include "vvRegisterForm.h"
30 #include "vvDocumentation.h"
31 #include "vvProgressDialog.h"
32 #include "vvQDicomSeriesSelector.h"
33 #include "vvSlicerManager.h"
34 #include "clitkImageCommon.h"
36 #include "vvInteractorStyleNavigator.h"
37 #include "vvImageWriter.h"
38 #include "vvSegmentationDialog.h"
39 #include "vvSurfaceViewerDialog.h"
40 #include "vvDeformationDialog.h"
41 #include "vvImageWarp.h"
43 #include "vvMidPosition.h"
45 #include "vvStructSelector.h"
46 #include "vvMeshReader.h"
47 #include "clitkConfiguration.h"
51 #include <itkImageFileReader.h>
52 #include <itkByteSwapper.h>
53 #include <itkCommand.h>
54 #include <itkNumericSeriesFileNames.h>
57 #include <vtkImageData.h>
58 #include <vtkImageActor.h>
59 #include <vtkCornerAnnotation.h>
60 #include <vtkRenderWindow.h>
61 #include <vtkRenderWindowInteractor.h>
62 #include <vtkRenderer.h>
63 #include <vtkRendererCollection.h>
64 #include <vtkWindowToImageFilter.h>
65 #include <vtkBMPWriter.h>
66 #include <vtkTIFFWriter.h>
67 #include <vtkPNMWriter.h>
68 #include <vtkPNGWriter.h>
69 #include <vtkJPEGWriter.h>
70 #include <vtkFFMPEGWriter.h>
71 #ifdef VTK_USE_MPEG2_ENCODER
72 #include <vtkMPEG2Writer.h>
74 #include <vtkMatrix4x4.h>
75 #include <vtkTransform.h>
83 #define COLUMN_UL_VIEW 1
84 #define COLUMN_UR_VIEW 2
85 #define COLUMN_DL_VIEW 3
86 #define COLUMN_DR_VIEW 4
87 #define COLUMN_CLOSE_IMAGE 5
88 #define COLUMN_RELOAD_IMAGE 6
89 #define COLUMN_IMAGE_NAME 7
91 #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN )"
94 0,Qt::UserRole full filename
95 1,Qt::CheckStateRole checkbutton UL View
96 1,Qt::UserRole overlay, fusion or vector
97 2,Qt::CheckStateRole checkbutton UR View
98 3,Qt::CheckStateRole checkbutton DL View
99 4,Qt::CheckStateRole checkbutton DR View
101 5,Qt::UserRole mSlicerManager id*/
103 //------------------------------------------------------------------------------
104 vvMainWindow::vvMainWindow():vvMainWindowBase()
106 setupUi(this); // this sets up the GUI
109 mMenuTools = menuTools;
110 // mMenuSegmentation = menuSegmentation;
111 mContextMenu = &contextMenu;
112 mMenuExperimentalTools = menuExperimental;
115 mCurrentSelectedImageId = "";
116 mCurrentPickedImageId = "";
117 mCurrentPickedImageIndex = 0;
119 //Init the contextMenu
120 this->setContextMenuPolicy(Qt::CustomContextMenu);
121 contextActions.resize(0);
122 QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
123 tr("O&pen new Image"));
124 actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
125 connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
126 contextActions.push_back(actionOpen_new_image);
127 contextMenu.addSeparator();
129 QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
130 tr("Close Current Image"));
131 connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
132 contextActions.push_back(actionClose_Image);
134 QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
135 tr("Reload Current Image"));
136 connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
137 contextActions.push_back(actionReload_image);
139 QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
140 tr("Save Current Image"));
141 connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
142 contextActions.push_back(actionSave_image);
144 contextMenu.addSeparator();
146 contextMenu.addAction(actionAdd_VF_to_current_Image);
147 contextActions.push_back(actionAdd_VF_to_current_Image);
149 QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
150 tr("Add overlay image to current image"));
151 contextMenu.addAction(actionAdd_Overlay_to_current_Image);
152 contextActions.push_back(actionAdd_Overlay_to_current_Image);
154 connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
156 contextMenu.addAction(actionAdd_fusion_image);
157 connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
158 contextActions.push_back(actionAdd_fusion_image);
162 QMenu * m = new QMenu(menubar);
164 // m->setObjectName(QString::fromUtf8("TOTOTO"));
165 contextMenu.addMenu(m);
166 QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
168 QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
172 connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
176 mSlicerManagers.resize(0);
186 header.append("Name");
188 DataTree->setHeaderLabels(header);
189 DataTree->resizeColumnToContents(COLUMN_TREE);
190 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
191 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
192 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
193 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
194 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
195 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
196 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
199 documentation = new vvDocumentation();
200 help_dialog = new vvHelpDialog();
201 dicomSeriesSelector = new vvDicomSeriesSelector();
203 inverseButton->setEnabled(0);
204 actionAdd_Overlay_to_current_Image->setEnabled(0);
205 actionSave_As->setEnabled(0);
206 actionAdd_VF_to_current_Image->setEnabled(0);
207 actionAdd_fusion_image->setEnabled(0);
210 verticalSliders.push_back(NOVerticalSlider);
211 verticalSliders.push_back(NEVerticalSlider);
212 verticalSliders.push_back(SOVerticalSlider);
213 verticalSliders.push_back(SEVerticalSlider);
215 for (int i =0; i < 4; i++)
216 verticalSliders[i]->hide();
218 horizontalSliders.push_back(NOHorizontalSlider);
219 horizontalSliders.push_back(NEHorizontalSlider);
220 horizontalSliders.push_back(SOHorizontalSlider);
221 horizontalSliders.push_back(SEHorizontalSlider);
223 for (int i =0; i < 4; i++)
224 horizontalSliders[i]->hide();
227 connect(NOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOVerticalSliderChanged()));
228 connect(NEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEVerticalSliderChanged()));
229 connect(SOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOVerticalSliderChanged()));
230 connect(SEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEVerticalSliderChanged()));
232 connect(NOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOHorizontalSliderMoved()));
233 connect(NEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEHorizontalSliderMoved()));
234 connect(SOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOHorizontalSliderMoved()));
235 connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved()));
238 connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition()));
239 connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration()));
240 connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
241 connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
242 connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
243 connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
244 connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
245 connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
246 connect(actionSlice_Image_As_Multiple_Images,SIGNAL(triggered()),this,SLOT(SliceImages()));
247 connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
248 connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
249 connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
250 connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
251 connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
252 connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
253 connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
255 ///////////////////////////////////////////////
256 connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
257 connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
258 ///////////////////////////////////////////////
260 actionNorth_East_Window->setEnabled(0);
261 actionNorth_West_Window->setEnabled(0);
262 actionSouth_East_Window->setEnabled(0);
263 actionSouth_West_Window->setEnabled(0);
265 connect(actionNorth_East_Window,SIGNAL(triggered()),this,SLOT(SaveNEScreenshot()));
266 connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
267 connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
268 connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
270 connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
271 connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
272 SLOT(DisplayChanged(QTreeWidgetItem*, int)));
274 connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
275 connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
276 connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
277 connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
278 connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
279 connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
280 connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages()));
283 connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
285 connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
286 connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
287 connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double)));
288 connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int)),this,SLOT(SetOverlayProperty(int)));
289 connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,double,double)),
290 this,SLOT(SetFusionProperty(int,int,double,double)));
291 connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
295 playButton->setEnabled(0);
296 frameRateLabel->setEnabled(0);
297 frameRateSpinBox->setEnabled(0);
298 connect(playButton, SIGNAL(clicked()),this,SLOT(PlayPause()));
299 connect(frameRateSpinBox, SIGNAL(valueChanged(int)),this,SLOT(ChangeFrameRate(int)));
301 goToCursorPushButton->setEnabled(0);
302 connect(goToCursorPushButton, SIGNAL(clicked()),this,SLOT(GoToCursor()));
304 NOViewWidget->hide();
305 NEViewWidget->hide();
306 SOViewWidget->hide();
307 SEViewWidget->hide();
309 //Recently opened files
310 std::list<std::string> recent_files = GetRecentlyOpenedImages();
311 recentlyOpenedFilesMenu=NULL;
312 if ( !recent_files.empty() ) {
313 createRecentlyOpenedFilesMenu();
314 updateRecentlyOpenedFilesMenu(recent_files);
317 // Adding all new tools (insertion in the menu)
318 vvToolManager::GetInstance()->InsertToolsInMenu(this);
320 if (!CLITK_EXPERIMENTAL)
321 menuExperimental->menuAction()->setVisible(false);
324 QTimer * timerMemory = new QTimer(this);
325 //timerMemory->setInterval(5);
326 connect(timerMemory, SIGNAL(timeout()), this, SLOT(UpdateMemoryUsage()));
327 timerMemory->start(2000);
330 vvRegisterForm* registerForm = new vvRegisterForm(QUrl("http://localhost/vvregister/write.php"));
331 registerForm->show();
334 //------------------------------------------------------------------------------
337 //------------------------------------------------------------------------------
338 void vvMainWindow::UpdateMemoryUsage()
340 // clitk::PrintMemory(true);
341 if (clitk::GetMemoryUsageInMb() == 0) infoPanel->setMemoryInMb("NA");
342 else infoPanel->setMemoryInMb(QString::number(clitk::GetMemoryUsageInMb())+" MiB");
344 //------------------------------------------------------------------------------
347 //------------------------------------------------------------------------------
348 void vvMainWindow::createRecentlyOpenedFilesMenu()
350 recentlyOpenedFilesMenu = new QMenu("Recently opened files...");
351 recentlyOpenedFilesMenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
352 menuFile->insertMenu(actionOpen_Image_With_Time,recentlyOpenedFilesMenu);
353 menuFile->insertSeparator(actionOpen_Image_With_Time);
355 //------------------------------------------------------------------------------
358 //------------------------------------------------------------------------------
360 void vvMainWindow::updateRecentlyOpenedFilesMenu(const std::list<std::string> &recent_files)
362 if(recentlyOpenedFilesMenu==NULL){
363 createRecentlyOpenedFilesMenu();
365 recentlyOpenedFilesMenu->clear();
367 for (std::list<std::string>::const_iterator i = recent_files.begin(); i!=recent_files.end(); i++) {
368 QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")), i->c_str(),this);
369 recentlyOpenedFilesMenu->addAction(current);
370 connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage()));
373 //------------------------------------------------------------------------------
376 //------------------------------------------------------------------------------
377 void vvMainWindow::ComputeMidPosition()
380 int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
381 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
382 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
385 midp.slicer_manager = mSlicerManagers[index];
386 midp.reference_image_index = ref;
387 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
390 QMessageBox::warning(this, "Error computing midposition image",midp.error_message.c_str());
392 QFileInfo info(midp.slicer_manager->GetFileName().c_str());
393 AddImage(midp.output,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_midposition.mhd");
395 QApplication::restoreOverrideCursor();
398 //------------------------------------------------------------------------------
401 //------------------------------------------------------------------------------
402 void vvMainWindow::AddContour(int image_index, vvMesh::Pointer contour, bool propagation)
404 QTreeWidgetItem *item = new QTreeWidgetItem();
405 item->setData(0,Qt::UserRole,"filename.vtk");
406 item->setData(1,Qt::UserRole,tr("contour"));
408 brush.setColor(QColor(contour->r*255,contour->g*255,contour->b*255));
409 brush.setStyle(Qt::SolidPattern);
410 item->setData(COLUMN_IMAGE_NAME,Qt::BackgroundRole,brush);
411 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
413 for (int j = 1; j <= 4; j++)
414 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(image_index)->data(j,Qt::CheckStateRole));
416 QTreePushButton* cButton = new QTreePushButton;
417 cButton->setItem(item);
418 cButton->setColumn(COLUMN_CLOSE_IMAGE);
419 cButton->setToolTip(tr("close image"));
420 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
421 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
422 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
424 QTreePushButton* rButton = new QTreePushButton;
425 rButton->setItem(item);
426 rButton->setColumn(COLUMN_RELOAD_IMAGE);
427 rButton->setToolTip(tr("reload image"));
428 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
429 rButton->setEnabled(false);
431 //connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
432 //this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
434 DataTree->topLevelItem(image_index)->setExpanded(1);
435 DataTree->topLevelItem(image_index)->addChild(item);
436 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
437 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
438 QString id = DataTree->topLevelItem(image_index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
439 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
442 mSlicerManagers[image_index]->AddContour(contour,propagation);
443 mSlicerManagers[image_index]->Render();
445 //------------------------------------------------------------------------------
448 //------------------------------------------------------------------------------
449 void vvMainWindow::OpenVTKContour()
451 if (mSlicerManagers.size() > 0) {
452 QString Extensions = "Images ( *.vtk *.obj)";
453 Extensions += ";;All Files (*)";
454 QString file = QFileDialog::getOpenFileName(this,tr("Open vtkPolyData"),mInputPathName,Extensions);
457 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
458 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
460 reader.SetImage(mSlicerManagers[index]->GetImage());
461 reader.SetModeToVTK();
462 reader.SetFilename(file.toStdString());
464 AddContour(index,reader.GetOutput()[0],false);
465 QApplication::restoreOverrideCursor();
468 //------------------------------------------------------------------------------
471 //------------------------------------------------------------------------------
472 void vvMainWindow::OpenDCStructContour()
474 if (mSlicerManagers.size() > 0) {
475 QString Extensions = "Dicom Files ( *.dcm RS*)";
476 Extensions += ";;All Files (*)";
477 QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
480 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
482 reader.SetFilename(file.toStdString());
483 vvStructSelector selector;
484 selector.SetStructures(reader.GetROINames());
485 if (!mSlicerManagers[index]->GetVF().IsNull())
486 selector.EnablePropagationCheckBox();
487 if (selector.exec()) {
488 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
489 reader.SetSelectedItems(selector.getSelectedItems());
490 reader.SetImage(mSlicerManagers[index]->GetImage());
491 if (selector.PropagationEnabled())
492 reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
494 std::vector<vvMesh::Pointer> contours=reader.GetOutput();
495 for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
496 i!=contours.end(); i++)
497 AddContour(index,*i,selector.PropagationEnabled());
498 QApplication::restoreOverrideCursor();
502 //------------------------------------------------------------------------------
505 //------------------------------------------------------------------------------
506 void vvMainWindow::ComputeDeformableRegistration()
508 if (mSlicerManagers.size() > 0) {
509 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
510 vvDeformationDialog dialog(index,mSlicerManagers);
512 std::string base_name=itksys::SystemTools::GetFilenameWithoutExtension(mSlicerManagers[dialog.GetInputFileIndex()]->GetFileName());
513 AddField(dialog.GetOutput(),dialog.getFieldFile(),dialog.GetInputFileIndex());
514 WarpImage(dialog.GetSelectedSlicer(),dialog.GetReferenceFrameIndex());
516 std::cout << "Error or user cancellation while computing deformation field..." << std::endl;
517 } else QMessageBox::information(this, "Need to open image","You must open an image first.");
519 //------------------------------------------------------------------------------
522 //------------------------------------------------------------------------------
523 void vvMainWindow::WarpImage()
525 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
526 if (!mSlicerManagers[index]->GetVF().IsNull()) {
528 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
529 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
531 WarpImage(mSlicerManagers[index],ref);
534 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field"));
536 //------------------------------------------------------------------------------
539 //------------------------------------------------------------------------------
540 void vvMainWindow::WarpImage(vvSlicerManager* selected_slicer,int reference_phase)
542 if (!selected_slicer->GetVF().IsNull()) {
543 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
544 QFileInfo info(selected_slicer->GetFileName().c_str());
545 vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
546 reference_phase,this);
547 if (warp.ComputeWarpedImage()) {
548 AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
549 AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
550 AddImage(warp.GetJacobianImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_jacobian.mhd");
551 QApplication::restoreOverrideCursor();
553 QApplication::restoreOverrideCursor();
554 QMessageBox::warning(this,tr("Different spacings"),tr("The vector field and image spacings must be the same in order to warp."));
557 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field."));
559 //------------------------------------------------------------------------------
562 //------------------------------------------------------------------------------
563 vvMainWindow::~vvMainWindow()
565 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
566 if (mSlicerManagers[i] != NULL)
567 delete mSlicerManagers[i];
570 //------------------------------------------------------------------------------
572 //------------------------------------------------------------------------------
573 QTabWidget * vvMainWindow::GetTab()
577 //------------------------------------------------------------------------------
580 //------------------------------------------------------------------------------
581 void vvMainWindow::MergeImages()
583 QString Extensions = EXTENSIONS;
584 Extensions += ";;All Files (*)";
585 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images"),mInputPathName,Extensions);
588 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
589 std::vector<std::string> vector;
591 unsigned int currentDim = 0;
592 std::vector<double> currentSpacing;
593 std::vector<int> currentSize;
594 std::vector<double> currentOrigin;
596 for (int i = 0; i < files.size(); i++) {
597 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
598 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
599 reader->SetFileName(files[i].toStdString().c_str());
600 reader->ReadImageInformation();
602 //NOViewWidget->hide();
603 //NEViewWidget->hide();
604 //SOViewWidget->hide();
605 //SEViewWidget->hide();
607 currentDim = reader->GetNumberOfDimensions();
609 for (unsigned int j = 0; j < currentDim; j++) {
612 currentSpacing.resize(currentDim);
613 currentSize.resize(currentDim);
614 currentOrigin.resize(currentDim);
616 currentOrigin[j] = reader->GetOrigin(j);
617 currentSpacing[j] = reader->GetSpacing(j);
618 currentSize[j] = reader->GetDimensions(j);
619 } else if (currentDim != reader->GetNumberOfDimensions()
620 || currentSpacing[j] != reader->GetSpacing(j)
621 || currentSize[j] != (int)reader->GetDimensions(j)
622 || currentOrigin[j] != reader->GetOrigin(j)) {
623 QString error = "Cannot read file (too different from others ";
624 error += files[i].toStdString().c_str();
625 QMessageBox::information(this,tr("Reading problem"),error);
631 vector.push_back(files[i].toStdString());
634 if (vector.size() > 0)
635 LoadImages(vector, vvImageReader::MERGED);
637 //------------------------------------------------------------------------------
639 //------------------------------------------------------------------------------
640 void vvMainWindow::SliceImages()
642 QString Extensions = EXTENSIONS;
643 Extensions += ";;All Files (*)";
645 QStringList files = QFileDialog::getOpenFileNames(this,tr("Slice Images"),mInputPathName,Extensions);
648 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
649 std::vector<std::string> vector;
650 for (int i = 0; i < files.size(); i++)
651 vector.push_back(files[i].toStdString());
652 LoadImages(vector, vvImageReader::SLICED);
654 //------------------------------------------------------------------------------
656 //------------------------------------------------------------------------------
657 void vvMainWindow::MergeImagesWithTime()
659 QString Extensions = EXTENSIONS;
660 Extensions += ";;All Files (*)";
661 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images With Time"),mInputPathName,Extensions);
664 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
665 std::vector<std::string> vector;
667 unsigned int currentDim = 0;
668 std::vector<double> currentSpacing;
669 std::vector<int> currentSize;
670 std::vector<double> currentOrigin;
672 for (int i = 0; i < files.size(); i++) {
673 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
674 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
676 reader->SetFileName(files[i].toStdString().c_str());
677 reader->ReadImageInformation();
679 currentDim = reader->GetNumberOfDimensions();
681 for (unsigned int j = 0; j < currentDim; j++) {
684 currentSpacing.resize(currentDim);
685 currentSize.resize(currentDim);
686 currentOrigin.resize(currentDim);
688 currentOrigin[j] = reader->GetOrigin(j);
689 currentSpacing[j] = reader->GetSpacing(j);
690 currentSize[j] = reader->GetDimensions(j);
691 } else if (currentDim != reader->GetNumberOfDimensions()
692 || currentSpacing[j] != reader->GetSpacing(j)
693 || currentSize[j] != (int)reader->GetDimensions(j)
694 || currentOrigin[j] != reader->GetOrigin(j)) {
695 QString error = "Cannot read file (too different from others ";
696 error += files[i].toStdString().c_str();
697 QMessageBox::information(this,tr("Reading problem"),error);
703 vector.push_back(files[i].toStdString());
705 QString error = "Cannot read file info for ";
706 error += files[i].toStdString().c_str();
708 error += "Maybe you're trying to open an image in an unsupported format?\n";
709 QMessageBox::information(this,tr("Reading problem"),error);
712 sort(vector.begin(),vector.end());
713 if (vector.size() > 1)
714 LoadImages(vector, vvImageReader::MERGEDWITHTIME);
716 QMessageBox::warning(this,tr("Reading problem"),"You need to select at least two images to merge images with time.\nIf you only want to open one image, please use the \"Open Image\" function.");
718 //------------------------------------------------------------------------------
721 //------------------------------------------------------------------------------
722 void vvMainWindow::OpenDicom()
724 std::vector<std::string> files;
726 std::cout << "dicomSeriesSelector " << std::endl;
727 if (dicomSeriesSelector->exec() == QDialog::Accepted) {
728 files = *(dicomSeriesSelector->GetFilenames());
729 LoadImages(files, vvImageReader::DICOM);
732 //------------------------------------------------------------------------------
734 //------------------------------------------------------------------------------
735 void vvMainWindow::OpenImages()
737 QString Extensions = EXTENSIONS;
738 Extensions += ";;All Files (*)";
740 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images"),mInputPathName,Extensions);
743 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
744 std::vector<std::string> vector;
745 for (int i = 0; i < files.size(); i++)
746 vector.push_back(files[i].toStdString());
747 LoadImages(vector, vvImageReader::IMAGE);
749 //------------------------------------------------------------------------------
750 void vvMainWindow::OpenRecentImage()
752 QAction * caller = qobject_cast<QAction*>(sender());
753 std::vector<std::string> images;
754 images.push_back(caller->text().toStdString());
755 mInputPathName = itksys::SystemTools::GetFilenamePath(images[0]).c_str();
756 LoadImages(images, vvImageReader::IMAGE);
758 //------------------------------------------------------------------------------
761 //------------------------------------------------------------------------------
762 void vvMainWindow::OpenImageWithTime()
764 QString Extensions = EXTENSIONS;
765 Extensions += ";;All Files (*)";
767 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images With Time"),mInputPathName,Extensions);
770 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
771 std::vector<std::string> vector;
772 for (int i = 0; i < files.size(); i++) {
773 vector.push_back(files[i].toStdString());
775 LoadImages(vector, vvImageReader::IMAGEWITHTIME);
777 //------------------------------------------------------------------------------
780 //------------------------------------------------------------------------------
781 void vvMainWindow::LoadImages(std::vector<std::string> files, vvImageReader::LoadedImageType filetype)
783 //Separate the way to open images and dicoms
785 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME)
786 fileSize = files.size();
790 // For SLICED, we need the number of slices (ndim and #slices)
791 std::vector<unsigned int> nSlices;
792 nSlices.resize(files.size());
793 std::fill(nSlices.begin(), nSlices.end(), 1);
794 if (filetype == vvImageReader::SLICED) {
795 for (int i = 0; i < fileSize; i++) {
796 itk::ImageIOBase::Pointer header = clitk::readImageHeader(files[i]);
797 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
800 QString error = "Cannot open file \n";
801 error += files[i].c_str();
802 QMessageBox::information(this,tr("Reading problem"),error);
805 if (header->GetNumberOfDimensions() < 3) {
807 QString error = "Dimension problem. Cannot slice \n";
808 error += files[i].c_str();
809 QMessageBox::information(this,tr("Reading problem"),error);
812 nSlices[i] = header->GetDimensions( header->GetNumberOfDimensions()-1 );
816 //Only add to the list of recently opened files when a single file is opened,
817 //to avoid polluting the list of recently opened files
818 if (files.size() == 1) {
819 QFileInfo finfo=tr(files[0].c_str());
820 AddToRecentlyOpenedImages(finfo.absoluteFilePath().toStdString());
821 updateRecentlyOpenedFilesMenu(GetRecentlyOpenedImages());
823 //init the progress events
824 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
825 vvProgressDialog progress("Opening " + files[0],fileSize>1);
826 qApp->processEvents();
828 int numberofsuccesulreads=0;
829 //open images as 1 or multiples
830 for (int i = 0; i < fileSize; i++) {
832 progress.SetText("Opening " + files[i]);
833 progress.SetProgress(i,fileSize);
834 qApp->processEvents();
836 for (unsigned int j = 0; j < nSlices[i]; j++) {
837 //read the image and put it in mSlicerManagers
838 vvSlicerManager* imageManager = new vvSlicerManager(4);
839 qApp->processEvents();
841 bool SetImageSucceed=false;
843 // Change filename if an image with the same already exist
844 int number = GetImageDuplicateFilenameNumber(files[i] + std::string("_slice"));
846 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME || filetype == vvImageReader::SLICED)
847 SetImageSucceed = imageManager->SetImage(files[i],filetype, number, j);
849 SetImageSucceed = imageManager->SetImages(files,filetype, number);
851 if (!SetImageSucceed) {
852 QApplication::restoreOverrideCursor();
853 QString error = "Cannot open file \n";
854 error += imageManager->GetLastError().c_str();
855 QMessageBox::information(this,tr("Reading problem"),error);
858 mSlicerManagers.push_back(imageManager);
860 //create an item in the tree with good settings
861 QTreeWidgetItem *item = new QTreeWidgetItem();
862 item->setData(0,Qt::UserRole,files[i].c_str());
863 QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
864 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
865 item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
866 qApp->processEvents();
868 //Create the buttons for reload and close
869 qApp->processEvents();
870 QTreePushButton* cButton = new QTreePushButton;
871 cButton->setItem(item);
872 cButton->setColumn(COLUMN_CLOSE_IMAGE);
873 cButton->setToolTip(tr("close image"));
874 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
875 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
876 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
878 QTreePushButton* rButton = new QTreePushButton;
879 rButton->setItem(item);
880 rButton->setColumn(COLUMN_RELOAD_IMAGE);
881 rButton->setToolTip(tr("reload image"));
882 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
883 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
884 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
886 DataTree->addTopLevelItem(item);
887 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
888 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
890 //set the id of the image
891 QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
892 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
893 mSlicerManagers.back()->SetId(id.toStdString());
895 linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
897 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
898 this,SLOT(CurrentImageChanged(std::string)));
899 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
900 this, SLOT(CurrentPickedImageChanged(std::string)));
901 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
902 this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
903 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
904 this, SLOT(VectorChanged(int,double,double,double, double)));
905 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
906 this, SLOT(OverlayChanged(int,double,double)));
907 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
908 this, SLOT(FusionChanged(int,double)));
909 connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
910 this,SLOT(WindowsChanged(int, int, int)));
911 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
912 this,SLOT(WindowLevelChanged(double, double, int, int)));
913 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
914 this,SLOT(UpdateSlice(int,int)));
915 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
916 this,SLOT(UpdateTSlice(int, int)));
917 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
918 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
919 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
920 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
921 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
922 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
923 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
924 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
925 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
927 numberofsuccesulreads++;
931 if (numberofsuccesulreads) {
932 NOViewWidget->show();
933 NEViewWidget->show();
934 SOViewWidget->show();
935 SEViewWidget->show();
940 // Try to guess default WindowLevel
942 mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
943 if ((range[0] == 0) && (range[1] == 1)) {
944 presetComboBox->setCurrentIndex(5);// binary
949 QApplication::restoreOverrideCursor();
951 //------------------------------------------------------------------------------
953 //------------------------------------------------------------------------------
954 void vvMainWindow::UpdateTree()
956 DataTree->resizeColumnToContents(COLUMN_TREE);
957 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
958 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
959 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
960 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
961 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
962 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
963 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
965 //------------------------------------------------------------------------------
967 //------------------------------------------------------------------------------
968 void vvMainWindow::CurrentImageChanged(std::string id)
970 if (id == mCurrentSelectedImageId) return; // Do nothing
972 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
973 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
976 DataTree->topLevelItem(i)->setSelected(0);
978 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
979 DataTree->topLevelItem(i)->child(child)->setSelected(0);
982 DataTree->topLevelItem(selected)->setSelected(1);
983 mCurrentSelectedImageId = id;
984 emit SelectedImageHasChanged(mSlicerManagers[selected]);
986 //------------------------------------------------------------------------------
988 //------------------------------------------------------------------------------
989 void vvMainWindow::CurrentPickedImageChanged(std::string id)
991 if (id == mCurrentPickedImageId) return; // Do nothing
993 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
994 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
997 DataTree->topLevelItem(i)->setSelected(0);
999 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
1000 DataTree->topLevelItem(i)->child(child)->setSelected(0);
1003 DataTree->topLevelItem(selected)->setSelected(1);
1004 mCurrentPickedImageId = id;
1005 mCurrentPickedImageIndex = selected;
1007 //------------------------------------------------------------------------------
1009 //------------------------------------------------------------------------------
1010 void vvMainWindow::ImageInfoChanged()
1012 contextActions[6]->setEnabled(1);
1013 contextActions[5]->setEnabled(1);
1014 actionSave_As->setEnabled(1);
1015 actionAdd_VF_to_current_Image->setEnabled(1);
1016 actionAdd_fusion_image->setEnabled(1);
1017 actionNorth_East_Window->setEnabled(1);
1018 actionNorth_West_Window->setEnabled(1);
1019 actionSouth_East_Window->setEnabled(1);
1020 actionSouth_West_Window->setEnabled(1);
1021 inverseButton->setEnabled(1);
1023 goToCursorPushButton->setEnabled(1);
1025 if (DataTree->selectedItems().size()) {
1026 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1028 colorMapComboBox->setEnabled(1);
1029 for (int i = 0; i < DataTree->topLevelItem(index)->childCount(); i++) {
1030 if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
1031 DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion") {
1032 colorMapComboBox->setEnabled(0);
1037 std::vector<double> origin;
1038 std::vector<double> inputSpacing;
1039 std::vector<int> inputSize;
1040 std::vector<double> sizeMM;
1041 vtkSmartPointer<vtkMatrix4x4> transformation;
1044 QString inputSizeInBytes;
1045 QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1047 if (mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size() > 1 || playMode == 1) {
1048 playButton->setEnabled(1);
1049 frameRateLabel->setEnabled(1);
1050 frameRateSpinBox->setEnabled(1);
1052 playButton->setEnabled(0);
1053 frameRateLabel->setEnabled(0);
1054 frameRateSpinBox->setEnabled(0);
1060 vvImage::Pointer imageSelected;
1061 if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
1062 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1063 dimension = imageSelected->GetNumberOfDimensions();
1064 origin.resize(dimension);
1065 inputSpacing.resize(dimension);
1066 inputSize.resize(dimension);
1067 sizeMM.resize(dimension);
1068 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1069 for (int i = 0; i < dimension; i++) {
1070 origin[i] = imageSelected->GetOrigin()[i];
1071 inputSpacing[i] = imageSelected->GetSpacing()[i];
1072 inputSize[i] = imageSelected->GetSize()[i];
1073 sizeMM[i] = inputSize[i]*inputSpacing[i];
1074 NPixel *= inputSize[i];
1076 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1077 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
1078 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
1079 dimension = imageSelected->GetNumberOfDimensions();
1080 origin.resize(dimension);
1081 inputSpacing.resize(dimension);
1082 inputSize.resize(dimension);
1083 sizeMM.resize(dimension);
1084 pixelType = mSlicerManagers[index]->GetVF()->GetScalarTypeAsITKString().c_str();
1085 for (int i = 0; i < dimension; i++) {
1086 origin[i] = imageSelected->GetOrigin()[i];
1087 inputSpacing[i] = imageSelected->GetSpacing()[i];
1088 inputSize[i] = imageSelected->GetSize()[i];
1089 sizeMM[i] = inputSize[i]*inputSpacing[i];
1090 NPixel *= inputSize[i];
1092 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1093 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
1094 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
1095 dimension = imageSelected->GetNumberOfDimensions();
1096 origin.resize(dimension);
1097 inputSpacing.resize(dimension);
1098 inputSize.resize(dimension);
1099 sizeMM.resize(dimension);
1100 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1101 for (int i = 0; i < dimension; i++) {
1102 origin[i] = imageSelected->GetOrigin()[i];
1103 inputSpacing[i] = imageSelected->GetSpacing()[i];
1104 inputSize[i] = imageSelected->GetSize()[i];
1105 sizeMM[i] = inputSize[i]*inputSpacing[i];
1106 NPixel *= inputSize[i];
1108 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1109 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
1110 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
1111 dimension = imageSelected->GetNumberOfDimensions();
1112 origin.resize(dimension);
1113 inputSpacing.resize(dimension);
1114 inputSize.resize(dimension);
1115 sizeMM.resize(dimension);
1116 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1117 for (int i = 0; i < dimension; i++) {
1118 origin[i] = imageSelected->GetOrigin()[i];
1119 inputSpacing[i] = imageSelected->GetSpacing()[i];
1120 inputSize[i] = imageSelected->GetSize()[i];
1121 sizeMM[i] = inputSize[i]*inputSpacing[i];
1122 NPixel *= inputSize[i];
1124 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1127 QString dim = QString::number(dimension) + " (";
1128 dim += pixelType + ")";
1130 infoPanel->setFileName(image);
1131 infoPanel->setDimension(dim);
1132 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1133 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1134 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1135 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1136 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1137 transformation = imageSelected->GetTransform()->GetMatrix();
1138 infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
1140 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1141 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1142 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1143 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1145 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1146 for (int i = 0; i < 4; i++) {
1147 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1148 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1152 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1153 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1154 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1155 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1157 infoPanel->setFileName(image);
1158 infoPanel->setDimension(dim);
1159 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1160 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1161 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1162 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1163 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1165 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1166 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1167 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1168 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1170 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1171 for (int i = 0; i < 4; i++) {
1172 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1173 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1177 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1178 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1179 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1180 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1182 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
1183 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1184 overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
1185 mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
1186 mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
1188 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1189 overlayPanel->getVFProperty(-1,-1,-1);
1191 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
1192 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1193 overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor());
1195 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1196 overlayPanel->getOverlayProperty(-1);
1198 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
1199 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1200 overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
1201 mSlicerManagers[index]->GetFusionColorMap(),
1202 mSlicerManagers[index]->GetFusionWindow(),
1203 mSlicerManagers[index]->GetFusionLevel());
1205 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1206 overlayPanel->getFusionProperty(-1, -1,-1,-1);
1210 //------------------------------------------------------------------------------
1212 //------------------------------------------------------------------------------
1213 void vvMainWindow::ShowDocumentation()
1215 documentation->show();
1217 //------------------------------------------------------------------------------
1218 void vvMainWindow::ShowHelpDialog()
1220 help_dialog->show();
1222 //------------------------------------------------------------------------------
1224 //------------------------------------------------------------------------------
1225 void vvMainWindow::ChangeViewMode()
1227 QListIterator<int> it0(splitter_3->sizes());
1228 QListIterator<int> it1(splitter_3->sizes());
1231 while (it0.hasNext()) {
1234 while (it1.hasNext()) {
1239 if (viewMode == 1) {
1241 size0.push_back(max0);
1243 size1.push_back(max1);
1245 splitter_3->setSizes(size0);
1246 OSplitter->setSizes(size1);
1247 DataTree->setColumnHidden(2,1);
1248 DataTree->setColumnHidden(3,1);
1249 DataTree->setColumnHidden(4,1);
1252 size0.push_back(int(max0/2));
1253 size0.push_back(int(max0/2));
1254 size1.push_back(int(max1/2));
1255 size1.push_back(int(max1/2));
1256 splitter_3->setSizes(size0);
1257 OSplitter->setSizes(size1);
1258 DataTree->setColumnHidden(2,0);
1259 DataTree->setColumnHidden(3,0);
1260 DataTree->setColumnHidden(4,0);
1263 //------------------------------------------------------------------------------
1265 //------------------------------------------------------------------------------
1266 QString vvMainWindow::GetSizeInBytes(unsigned long size)
1268 QString result = "";// QString::number(size);
1269 //result += " bytes (";
1270 if (size > 1000000000) {
1272 result += QString::number(size);
1273 result += "Gb";//)";
1274 } else if (size > 1000000) {
1276 result += QString::number(size);
1277 result += "Mb";//)";
1278 } else if (size > 1000) {
1280 result += QString::number(size);
1281 result += "kb";//)";
1285 //------------------------------------------------------------------------------
1287 //------------------------------------------------------------------------------
1288 QString vvMainWindow::Get4x4MatrixDoubleAsString(vtkSmartPointer<vtkMatrix4x4> matrix)
1290 std::ostringstream strmatrix;
1292 for (unsigned int i = 0; i < 4; i++) {
1293 for (unsigned int j = 0; j < 4; j++) {
1294 strmatrix.flags(ios::showpos);
1295 strmatrix.width(10);
1296 strmatrix.precision(3);
1297 strmatrix.setf(ios::fixed,ios::floatfield);
1298 strmatrix.fill(' ');
1299 strmatrix << std::left << matrix->GetElement(i, j);
1300 //strmatrix.width(10);
1303 strmatrix << std::endl;
1305 QString result = strmatrix.str().c_str();
1308 //------------------------------------------------------------------------------
1310 //------------------------------------------------------------------------------
1311 QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble)
1314 for (unsigned int i= 0; i < vectorDouble.size(); i++) {
1317 result += QString::number(vectorDouble[i]);
1321 //------------------------------------------------------------------------------
1323 //------------------------------------------------------------------------------
1324 QString vvMainWindow::GetVectorIntAsString(std::vector<int> vectorInt)
1327 for (unsigned int i= 0; i < vectorInt.size(); i++) {
1330 result += QString::number(vectorInt[i]);
1334 //------------------------------------------------------------------------------
1336 //------------------------------------------------------------------------------
1337 int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item)
1339 QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1340 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1341 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1346 //------------------------------------------------------------------------------
1348 //------------------------------------------------------------------------------
1349 QTreeWidgetItem* vvMainWindow::GetItemFromSlicerManager(vvSlicerManager* sm)
1351 QString id = sm->GetId().c_str();
1352 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1353 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1354 return DataTree->topLevelItem(i);
1358 //------------------------------------------------------------------------------
1360 //------------------------------------------------------------------------------
1361 void vvMainWindow::DisplayChanged(QTreeWidgetItem *clicked_item, int column)
1363 int index = GetSlicerIndexFromItem(clicked_item);
1364 if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
1366 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1367 //Trick to avoid redoing twice the job for a key (sr)
1368 mSlicerManagers[i]->GetSlicer(column-1)->GetRenderWindow()-> GetInteractor()->SetKeySym("Crap");
1370 QTreeWidgetItem* current_row=DataTree->topLevelItem(i);
1371 if (DataTree->topLevelItem(index) == current_row) {
1372 vvSlicer* clicked_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1373 if (current_row == clicked_item) {
1374 //If we just activated a slicer
1375 if (current_row->data(column,Qt::CheckStateRole).toInt() > 0) {
1376 mSlicerManagers[i]->UpdateSlicer(column-1,clicked_item->data(column,Qt::CheckStateRole).toInt());
1377 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1378 DisplaySliders(i,column-1);
1379 std::map<std::string,int> overlay_counts;
1380 for (int child = 0; child < current_row->childCount(); child++) {
1381 std::string overlay_type =
1382 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1383 overlay_counts[overlay_type]++;
1384 current_row->child(child)->setData(column,Qt::CheckStateRole,
1385 current_row->data(column,Qt::CheckStateRole));
1386 clicked_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,true);
1388 } else { //We don't allow simply desactivating a slicer
1389 clicked_item->setData(column,Qt::CheckStateRole,2);
1393 //if we clicked on the vector(or overlay) and not the image
1395 if (clicked_item->data(column,Qt::CheckStateRole).toInt()) {
1396 current_row->setData(column,Qt::CheckStateRole,2);
1397 mSlicerManagers[i]->UpdateSlicer(column-1,2);
1398 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1399 DisplaySliders(i,column-1);
1401 int vis = clicked_item->data(column,Qt::CheckStateRole).toInt();
1402 std::string overlay_type = clicked_item->data(1,Qt::UserRole).toString().toStdString();
1403 int overlay_index=0;
1404 for (int child = 0; child < current_row->childCount(); child++) {
1405 if (current_row->child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1407 if (current_row->child(child) == clicked_item) break;
1409 clicked_slicer->SetActorVisibility(
1410 clicked_item->data(1,Qt::UserRole).toString().toStdString(), overlay_index-1,vis);
1412 } else if (current_row->data(column,Qt::CheckStateRole).toInt() > 0) {
1413 current_row->setData(column,Qt::CheckStateRole,0);
1414 mSlicerManagers[i]->UpdateSlicer(column-1,0);
1415 std::map<std::string,int> overlay_counts;
1416 for (int child = 0; child < current_row->childCount(); child++) {
1417 std::string overlay_type =
1418 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1419 overlay_counts[overlay_type]++;
1420 current_row->child(child)->setData(column,Qt::CheckStateRole,0);
1421 vvSlicer * current_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1422 current_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,false);
1425 //mSlicerManagers[i]->SetColorMap(-1);
1426 mSlicerManagers[i]->SetColorMap();
1428 mSlicerManagers[index]->GetSlicer(column-1)->Render();
1430 //------------------------------------------------------------------------------
1432 void vvMainWindow::InitSlicers()
1434 if (mSlicerManagers.size()) {
1435 mSlicerManagers.back()->GenerateDefaultLookupTable();
1437 mSlicerManagers.back()->SetSlicerWindow(0,NOViewWidget->GetRenderWindow());
1438 mSlicerManagers.back()->SetSlicerWindow(1,NEViewWidget->GetRenderWindow());
1439 mSlicerManagers.back()->SetSlicerWindow(2,SOViewWidget->GetRenderWindow());
1440 mSlicerManagers.back()->SetSlicerWindow(3,SEViewWidget->GetRenderWindow());
1444 //------------------------------------------------------------------------------
1445 void vvMainWindow::InitDisplay()
1447 if (mSlicerManagers.size()) {
1448 //BE CAREFUL : this is absolutely necessary to set the interactor style
1449 //in order to have the same style instanciation for all SlicerManagers in
1451 for (int j = 0; j < 4; j++) {
1452 vvInteractorStyleNavigator* style = vvInteractorStyleNavigator::New();
1453 style->SetAutoAdjustCameraClippingRange(1);
1454 bool AlreadySelected = false;
1455 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1456 mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
1458 //select the image only if previous are not selected
1459 if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1) {
1460 mSlicerManagers[i]->UpdateSlicer(j,1);
1461 AlreadySelected = true;
1462 } else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected) {
1463 if (DataTree->selectedItems().size() == 0)
1464 DataTree->topLevelItem(i)->setSelected(1);
1465 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
1466 mSlicerManagers[i]->UpdateSlicer(j,1);
1467 DisplaySliders(i,j);
1469 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,0);
1470 mSlicerManagers[i]->UpdateSlicer(j,0);
1477 //------------------------------------------------------------------------------
1479 //------------------------------------------------------------------------------
1480 void vvMainWindow::DisplaySliders(int slicer, int window)
1483 mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
1484 int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
1488 tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
1489 int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetTSlice();
1490 bool showHorizontal = false;
1491 bool showVertical = false;
1492 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1493 || (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 2
1494 && mSlicerManagers[slicer]->GetType() != vvImageReader::IMAGEWITHTIME
1495 && mSlicerManagers[slicer]->GetType() != vvImageReader::MERGEDWITHTIME))
1496 showVertical = true;
1497 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1498 || mSlicerManagers[slicer]->GetType() == vvImageReader::IMAGEWITHTIME
1499 || mSlicerManagers[slicer]->GetType() == vvImageReader::MERGEDWITHTIME)
1500 showHorizontal = true;
1503 verticalSliders[window]->show();
1505 verticalSliders[window]->hide();
1506 verticalSliders[window]->setRange(range[0],range[1]);
1507 verticalSliders[window]->setValue(position);
1510 horizontalSliders[window]->show();
1512 horizontalSliders[window]->hide();
1513 horizontalSliders[window]->setRange(tRange[0],tRange[1]);
1514 horizontalSliders[window]->setValue(tPosition);
1516 //------------------------------------------------------------------------------
1518 //------------------------------------------------------------------------------
1519 void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column)
1521 int index = GetSlicerIndexFromItem(item);
1523 if (DataTree->topLevelItem(index) != item) {
1524 QString warning = "Do you really want to close the overlay : ";
1525 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1526 QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
1528 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1529 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1530 if (msgBox.exec() == QMessageBox::AcceptRole) {
1531 std::string overlay_type=item->data(1,Qt::UserRole).toString().toStdString();
1532 int overlay_index=0;
1533 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++) {
1534 if (DataTree->topLevelItem(index)->\
1535 child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1537 if (DataTree->topLevelItem(index)->child(child) == item) break;
1539 mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
1540 mSlicerManagers[index]->SetColorMap(0);
1541 DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
1542 mSlicerManagers[index]->Render();
1544 } else if (DataTree->topLevelItemCount() <= 1) {
1545 QString warning = "Do you really want to close the image : ";
1546 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1547 warning += "\nThis is the last image, you're about to close vv !!!";
1548 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1550 msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
1551 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1552 if (msgBox.exec() == QMessageBox::AcceptRole) {
1556 QString warning = "Do you really want to close the image : ";
1557 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1558 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1560 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1561 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1562 if (msgBox.exec() == QMessageBox::AcceptRole) {
1564 // Tell tools that we close an image
1565 emit AnImageIsBeingClosed(mSlicerManagers[index]);
1567 std::vector<vvSlicerManager*>::iterator Manageriter = mSlicerManagers.begin();
1568 DataTree->takeTopLevelItem(index);
1569 for (int i = 0; i < index; i++) {
1572 linkPanel->removeImage(index);
1573 mSlicerManagers[index]->RemoveActors();
1574 delete mSlicerManagers[index];
1575 mSlicerManagers.erase(Manageriter);
1583 //------------------------------------------------------------------------------
1585 //------------------------------------------------------------------------------
1586 void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column)
1588 // int index = GetSlicerIndexFromItem(item);
1589 // QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1590 // if (item->data(1,Qt::UserRole).toString() == "vector")
1591 // mSlicerManagers[index]->ReloadVF();
1593 // mSlicerManagers[index]->Reload();
1595 // QApplication::restoreOverrideCursor();
1596 int index = GetSlicerIndexFromItem(item);
1597 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1598 QString role=item->data(1,Qt::UserRole).toString();
1599 if ( role == "vector")
1600 mSlicerManagers[index]->ReloadVF();
1601 else if (role == "overlay")
1602 mSlicerManagers[index]->ReloadOverlay();
1603 else if (role == "fusion")
1604 mSlicerManagers[index]->ReloadFusion();
1606 mSlicerManagers[index]->Reload();
1608 // Update view and info
1610 mSlicerManagers[index]->Render();
1611 QApplication::restoreOverrideCursor();
1613 //------------------------------------------------------------------------------
1615 //------------------------------------------------------------------------------
1616 void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value)
1618 infoPanel->setCurrentInfo(visibility,x,y,z,X,Y,Z,value);
1620 //------------------------------------------------------------------------------
1622 //------------------------------------------------------------------------------
1623 void vvMainWindow::VectorChanged(int visibility,double x, double y, double z, double value)
1625 overlayPanel->getCurrentVectorInfo(visibility,x,y,z,value);
1627 //------------------------------------------------------------------------------
1629 //------------------------------------------------------------------------------
1630 void vvMainWindow::OverlayChanged(int visibility, double valueOver, double valueRef)
1632 overlayPanel->getCurrentOverlayInfo(visibility,valueOver, valueRef);
1634 //------------------------------------------------------------------------------
1636 //------------------------------------------------------------------------------
1637 void vvMainWindow::FusionChanged(int visibility, double value)
1639 overlayPanel->getCurrentFusionInfo(visibility,value);
1641 //------------------------------------------------------------------------------
1643 //------------------------------------------------------------------------------
1644 void vvMainWindow::WindowsChanged(int window, int view, int slice)
1646 infoPanel->setViews(window, view, slice);
1648 //------------------------------------------------------------------------------
1650 //------------------------------------------------------------------------------
1651 void vvMainWindow::WindowLevelChanged(double window, double level,int preset,int colormap)
1653 windowSpinBox->setValue(window);
1654 levelSpinBox->setValue(level);
1655 colorMapComboBox->setCurrentIndex(colormap);
1656 presetComboBox->setCurrentIndex(preset);
1658 //------------------------------------------------------------------------------
1660 //------------------------------------------------------------------------------
1661 void vvMainWindow::WindowLevelEdited()
1663 presetComboBox->setCurrentIndex(6);
1664 UpdateWindowLevel();
1666 //------------------------------------------------------------------------------
1668 //------------------------------------------------------------------------------
1669 void vvMainWindow::UpdateWindowLevel()
1671 if (DataTree->selectedItems().size()) {
1672 if (presetComboBox->currentIndex() == 7) //For ventilation
1673 colorMapComboBox->setCurrentIndex(5);
1674 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1675 mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
1676 mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
1677 mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
1678 mSlicerManagers[index]->Render();
1679 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1680 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1683 //------------------------------------------------------------------------------
1685 //------------------------------------------------------------------------------
1686 void vvMainWindow::UpdateColorMap()
1688 if (DataTree->selectedItems().size()) {
1689 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1690 mSlicerManagers[index]->SetColorMap(colorMapComboBox->currentIndex());
1691 mSlicerManagers[index]->Render();
1694 //------------------------------------------------------------------------------
1695 void vvMainWindow::SwitchWindowLevel()
1697 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1698 int window = mSlicerManagers[index]->GetColorWindow();
1699 presetComboBox->setCurrentIndex(6);
1700 windowSpinBox->setValue(-window);
1701 UpdateWindowLevel();
1703 //------------------------------------------------------------------------------
1705 //------------------------------------------------------------------------------
1706 void vvMainWindow::ApplyWindowLevelToAllImages()
1708 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1709 if (mSlicerManagers[i] == NULL)
1711 mSlicerManagers[i]->SetColorWindow(windowSpinBox->value());
1712 mSlicerManagers[i]->SetColorLevel(levelSpinBox->value());
1713 mSlicerManagers[i]->SetPreset(6);
1714 mSlicerManagers[i]->Render();
1717 //------------------------------------------------------------------------------
1719 //------------------------------------------------------------------------------
1720 void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
1722 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1723 if (mSlicerManagers[i]->GetId() == id) {
1724 //mSlicerManagers[i]->SetTSlice(temps);
1725 mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
1726 mSlicerManagers[i]->UpdateViews(0,slicer);
1731 //------------------------------------------------------------------------------
1733 //------------------------------------------------------------------------------
1734 void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm, vvSlicer* refSlicer)
1736 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1737 if (id == mSlicerManagers[i]->GetId()) {
1738 mSlicerManagers[i]->UpdateLinkedNavigation(refSlicer);
1742 //------------------------------------------------------------------------------
1744 //------------------------------------------------------------------------------
1745 void vvMainWindow::ShowContextMenu(QPoint point)
1747 if (!DataTree->selectedItems().size()) {
1748 contextActions[1]->setEnabled(0);
1749 contextActions[2]->setEnabled(0);
1750 contextActions[3]->setEnabled(0);
1751 contextActions[4]->setEnabled(0);
1752 contextActions[5]->setEnabled(0);
1753 contextActions[6]->setEnabled(0);
1755 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1756 contextActions[1]->setEnabled(1);
1757 contextActions[2]->setEnabled(
1758 DataTree->itemWidget(DataTree->selectedItems()[0],
1759 COLUMN_RELOAD_IMAGE)->isEnabled());
1760 contextActions[3]->setEnabled(1);
1761 contextActions[5]->setEnabled(1);
1762 contextActions[6]->setEnabled(1);
1764 if (mSlicerManagers[index]->GetDimension() < 3)
1765 contextActions[4]->setEnabled(0);
1767 contextActions[4]->setEnabled(1);
1769 contextMenu.exec(QCursor::pos());
1771 //------------------------------------------------------------------------------
1773 //------------------------------------------------------------------------------
1774 void vvMainWindow::CloseImage()
1776 CloseImage(DataTree->selectedItems()[0],0);
1778 //------------------------------------------------------------------------------
1780 //------------------------------------------------------------------------------
1781 void vvMainWindow::ReloadImage()
1783 ReloadImage(DataTree->selectedItems()[0],0);
1785 //------------------------------------------------------------------------------
1787 //------------------------------------------------------------------------------
1788 void vvMainWindow::SelectOverlayImage()
1790 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1792 //check if one overlay image is added
1793 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1794 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay") {
1795 QString error = "Cannot add more than one compared image\n";
1796 error += "Please remove first ";
1797 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1798 QMessageBox::information(this,tr("Problem adding compared image !"),error);
1802 QString Extensions = EXTENSIONS;
1803 Extensions += ";;All Files (*)";
1804 QString file = QFileDialog::getOpenFileName(this,tr("Load Overlay image"),mInputPathName,Extensions);
1805 if (!file.isEmpty())
1806 AddOverlayImage(index,file);
1808 //------------------------------------------------------------------------------
1810 //------------------------------------------------------------------------------
1811 void vvMainWindow::AddOverlayImage(int index, QString file)
1814 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1815 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1816 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1817 reader->SetFileName(file.toStdString().c_str());
1818 reader->ReadImageInformation();
1819 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1820 int dimension = reader->GetNumberOfDimensions();
1821 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1822 vvProgressDialog progress("Opening " + file.toStdString());
1823 qApp->processEvents();
1825 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1826 if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component)) {
1827 //create an item in the tree with good settings
1828 QTreeWidgetItem *item = new QTreeWidgetItem();
1829 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1830 item->setData(1,Qt::UserRole,tr("overlay"));
1831 QFileInfo fileinfo(file); //Do not show the path
1832 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
1833 item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
1834 qApp->processEvents();
1836 for (int j = 1; j <= 4; j++) {
1837 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1838 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("overlay",0,
1839 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1842 //Create the buttons for reload and close
1843 qApp->processEvents();
1844 QTreePushButton* cButton = new QTreePushButton;
1845 cButton->setItem(item);
1846 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1847 cButton->setToolTip(tr("close image"));
1848 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1849 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1850 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1852 QTreePushButton* rButton = new QTreePushButton;
1853 rButton->setItem(item);
1854 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1855 rButton->setToolTip(tr("reload image"));
1856 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1857 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1858 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1860 DataTree->topLevelItem(index)->setExpanded(1);
1861 DataTree->topLevelItem(index)->addChild(item);
1862 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1863 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1865 //set the id of the image
1866 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1867 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1869 qApp->processEvents();
1871 QApplication::restoreOverrideCursor();
1873 QApplication::restoreOverrideCursor();
1874 QString error = "Cannot import the new image.\n";
1875 error += mSlicerManagers[index]->GetLastError().c_str();
1876 QMessageBox::information(this,tr("Problem reading image !"),error);
1879 //------------------------------------------------------------------------------
1882 //------------------------------------------------------------------------------
1883 void vvMainWindow::AddROI(int index, QString file)
1886 // Get slice manager
1890 vvImageReader * mReader = new vvImageReader;
1891 mReader->SetInputFilename(filename.toStdString());
1892 mReader->Update(IMAGE);
1893 if (mReader->GetLastError().size() != 0) {
1894 std::cerr << "Error while reading " << filename.toStdString() << std::endl;
1895 QString error = "Cannot open file \n";
1896 error += mReader->GetLastError().c_str();
1897 QMessageBox::information(this,tr("Reading problem"),error);
1901 vvImage::Pointer roi = mReader->GetOutput();
1903 // Create roi in new tool
1904 vvToolStructureSetManager::AddImage(mCurrentSlicerManager, roi);
1907 //------------------------------------------------------------------------------
1909 //------------------------------------------------------------------------------
1910 void vvMainWindow::SelectFusionImage()
1912 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1914 //check if one fusion image is added
1915 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1916 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") {
1917 QString error = "Cannot add more than one fusion image\n";
1918 error += "Please remove first ";
1919 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1920 QMessageBox::information(this,tr("Problem adding fusion image !"),error);
1924 QString Extensions = EXTENSIONS;
1925 Extensions += ";;All Files (*)";
1926 QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
1927 if (!file.isEmpty())
1928 AddFusionImage(index,file);
1930 //------------------------------------------------------------------------------
1932 //------------------------------------------------------------------------------
1933 void vvMainWindow::AddFusionImage(int index, QString file)
1935 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1936 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1937 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1938 reader->SetFileName(file.toStdString().c_str());
1939 reader->ReadImageInformation();
1940 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1942 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1943 vvProgressDialog progress("Opening fusion");
1944 qApp->processEvents();
1946 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1947 if (mSlicerManagers[index]->SetFusion(file.toStdString(),
1948 reader->GetNumberOfDimensions(), component)) {
1949 //create an item in the tree with good settings
1950 QTreeWidgetItem *item = new QTreeWidgetItem();
1951 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1952 item->setData(1,Qt::UserRole,tr("fusion"));
1953 QFileInfo fileinfo(filename.c_str()); //Do not show the path
1954 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
1955 item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
1956 qApp->processEvents();
1958 for (int j = 1; j <= 4; j++) {
1959 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1960 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0,
1961 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1964 //Create the buttons for reload and close
1965 qApp->processEvents();
1966 QTreePushButton* cButton = new QTreePushButton;
1967 cButton->setItem(item);
1968 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1969 cButton->setToolTip(tr("close image"));
1970 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1971 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1972 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1974 QTreePushButton* rButton = new QTreePushButton;
1975 rButton->setItem(item);
1976 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1977 rButton->setToolTip(tr("reload image"));
1978 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1979 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1980 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1982 DataTree->topLevelItem(index)->setExpanded(1);
1983 DataTree->topLevelItem(index)->addChild(item);
1984 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1985 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1987 //set the id of the image
1988 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1989 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1991 qApp->processEvents();
1993 QApplication::restoreOverrideCursor();
1995 QApplication::restoreOverrideCursor();
1996 QString error = "Cannot import the new image.\n";
1997 error += mSlicerManagers[index]->GetLastError().c_str();
1998 QMessageBox::information(this,tr("Problem reading image !"),error);
2001 QString error = "Cannot import the new image.\n";
2002 QMessageBox::information(this,tr("Problem reading image !"),error);
2005 //------------------------------------------------------------------------------
2008 //------------------------------------------------------------------------------
2009 void vvMainWindow::OpenField()
2011 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2012 //check if a vector field has already been added
2013 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
2014 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector") {
2015 QString error = "Cannot add more than one vector field\n";
2016 error += "Please remove first ";
2017 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
2018 QMessageBox::information(this,tr("Problem adding vector field!"),error);
2022 QString Extensions = "Images ( *.mhd)";
2023 Extensions += ";;Images ( *.vf)";
2024 QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
2025 if (!file.isEmpty())
2026 AddField(file,index);
2028 //------------------------------------------------------------------------------
2031 //------------------------------------------------------------------------------
2032 void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
2034 //create an item in the tree with good settings
2035 QTreeWidgetItem *item = new QTreeWidgetItem();
2036 item->setData(0,Qt::UserRole,filename.toStdString().c_str());
2037 item->setData(1,Qt::UserRole,tr("vector"));
2038 QFileInfo fileinfo(filename); //Do not show the path
2039 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
2040 item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
2041 qApp->processEvents();
2043 for (int j = 1; j <= 4; j++) {
2044 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2045 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("vector",0,
2046 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
2049 //Create the buttons for reload and close
2050 qApp->processEvents();
2051 QTreePushButton* cButton = new QTreePushButton;
2052 cButton->setItem(item);
2053 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2054 cButton->setToolTip(tr("close vector field"));
2055 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2056 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2057 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2059 QTreePushButton* rButton = new QTreePushButton;
2060 rButton->setItem(item);
2061 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2062 rButton->setToolTip(tr("reload vector field"));
2063 rButton->setEnabled(from_disk);
2064 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2065 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2066 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2068 DataTree->topLevelItem(index)->setExpanded(1);
2069 DataTree->topLevelItem(index)->addChild(item);
2070 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2071 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2073 //set the id of the image
2074 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2075 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2077 qApp->processEvents();
2079 QApplication::restoreOverrideCursor();
2081 //------------------------------------------------------------------------------
2084 //------------------------------------------------------------------------------
2085 void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
2087 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2088 vvSlicerManager* imageManager = mSlicerManagers[index];
2089 if (imageManager->SetVF(vf,file.toStdString())) {
2090 AddFieldEntry(file,index,false);
2092 QString error = "Cannot import the vector field for this image.\n";
2093 error += imageManager->GetLastError().c_str();
2094 QMessageBox::information(this,tr("Problem reading VF !"),error);
2096 QApplication::restoreOverrideCursor();
2098 //------------------------------------------------------------------------------
2101 //------------------------------------------------------------------------------
2102 void vvMainWindow::AddField(QString file,int index)
2104 if (QFile::exists(file)) {
2105 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2107 //init the progress events
2108 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2109 vvProgressDialog progress("Opening " + file.toStdString());
2110 qApp->processEvents();
2112 //read the vector and put it in the current mSlicerManager
2113 vvSlicerManager* imageManager = mSlicerManagers[index];
2114 qApp->processEvents();
2116 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2117 if (imageManager->SetVF(file.toStdString())) {
2118 imageManager->Render();
2119 AddFieldEntry(file,index,true);
2121 QApplication::restoreOverrideCursor();
2122 QString error = "Cannot import the vector field for this image.\n";
2123 error += imageManager->GetLastError().c_str();
2124 QMessageBox::information(this,tr("Problem reading VF !"),error);
2127 QMessageBox::information(this,tr("Problem reading VF !"),"File doesn't exist!");
2130 //------------------------------------------------------------------------------
2133 //------------------------------------------------------------------------------
2134 void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width, double r, double g, double b)
2136 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2137 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
2138 for (int i = 0; i < 4; i++) {
2139 mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
2140 mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
2141 mSlicerManagers[index]->GetSlicer(i)->SetVFWidth(width);
2142 mSlicerManagers[index]->GetSlicer(i)->SetVFColor(r,g,b);
2144 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
2146 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(0);
2150 //------------------------------------------------------------------------------
2153 //------------------------------------------------------------------------------
2154 void vvMainWindow::SetOverlayProperty(int color)
2156 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2157 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
2158 mSlicerManagers[index]->SetOverlayColor(color);
2159 mSlicerManagers[index]->SetColorMap(0);
2160 mSlicerManagers[index]->Render();
2163 //------------------------------------------------------------------------------
2165 //------------------------------------------------------------------------------
2166 void vvMainWindow::SetFusionProperty(int opacity, int colormap,double window, double level)
2168 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2169 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
2170 mSlicerManagers[index]->SetFusionOpacity(opacity);
2171 mSlicerManagers[index]->SetFusionColorMap(colormap);
2172 mSlicerManagers[index]->SetFusionWindow(window);
2173 mSlicerManagers[index]->SetFusionLevel(level);
2174 mSlicerManagers[index]->SetColorMap(0);
2175 mSlicerManagers[index]->Render();
2178 //------------------------------------------------------------------------------
2180 //------------------------------------------------------------------------------
2181 void vvMainWindow::SaveAs()
2183 if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
2184 QMessageBox::warning(this,tr("Unsupported type"),tr("Sorry, saving a vector field is unsupported for the moment"));
2188 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2189 int dimension = mSlicerManagers[index]->GetDimension();
2190 QStringList OutputListeFormat;
2191 OutputListeFormat.clear();
2192 if (dimension == 1) {
2193 OutputListeFormat.push_back(".mhd");
2195 if (dimension == 2) {
2196 OutputListeFormat.push_back(".bmp");
2197 OutputListeFormat.push_back(".png");
2198 OutputListeFormat.push_back(".jpeg");
2199 OutputListeFormat.push_back(".tif");
2200 OutputListeFormat.push_back(".mhd");
2201 OutputListeFormat.push_back(".hdr");
2202 OutputListeFormat.push_back(".vox");
2203 } else if (dimension == 3) {
2204 OutputListeFormat.push_back(".mhd");
2205 OutputListeFormat.push_back(".hdr");
2206 OutputListeFormat.push_back(".vox");
2207 } else if (dimension == 4) {
2208 OutputListeFormat.push_back(".mhd");
2210 QString Extensions = "AllFiles(*.*)";
2211 for (int i = 0; i < OutputListeFormat.count(); i++) {
2212 Extensions += ";;Images ( *";
2213 Extensions += OutputListeFormat[i];
2216 QString fileName = QFileDialog::getSaveFileName(this,
2218 mSlicerManagers[index]->GetFileName().c_str(),
2220 if (!fileName.isEmpty()) {
2221 std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
2222 if (OutputListeFormat.contains(
2223 fileformat.c_str())) {
2224 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2225 std::string action = "Saving";
2226 vvProgressDialog progress("Saving "+fileName.toStdString());
2227 qApp->processEvents();
2228 vvImageWriter::Pointer writer = vvImageWriter::New();
2229 writer->SetOutputFileName(fileName.toStdString());
2230 writer->SetInput(mSlicerManagers[index]->GetImage());
2232 QApplication::restoreOverrideCursor();
2233 if (writer->GetLastError().size()) {
2234 QString error = "Saving did not succeed\n";
2235 error += writer->GetLastError().c_str();
2236 QMessageBox::information(this,tr("Saving Problem"),error);
2240 QString error = fileformat.c_str();
2241 if (error.isEmpty())
2242 error += "no file format specified !";
2244 error += " format unknown !!!\n";
2245 QMessageBox::information(this,tr("Saving Problem"),error);
2250 //------------------------------------------------------------------------------
2253 //------------------------------------------------------------------------------
2254 void vvMainWindow::AddLink(QString image1,QString image2)
2256 unsigned int sm1 = 0;
2257 unsigned int sm2 = 0;
2259 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2260 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2261 mSlicerManagers[i]->AddLink(image2.toStdString());
2264 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2265 mSlicerManagers[i]->AddLink(image1.toStdString());
2270 if (linkPanel->isLinkAll()) {
2271 emit UpdateLinkedNavigation(mSlicerManagers[sm1]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2272 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2275 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[sm1], mSlicerManagers[sm1]->GetSlicer(0));
2279 //------------------------------------------------------------------------------
2282 //------------------------------------------------------------------------------
2283 void vvMainWindow::RemoveLink(QString image1,QString image2)
2285 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2286 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2287 mSlicerManagers[i]->RemoveLink(image2.toStdString());
2289 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2290 mSlicerManagers[i]->RemoveLink(image1.toStdString());
2294 //------------------------------------------------------------------------------
2296 //------------------------------------------------------------------------------
2297 void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset)
2300 while(sm != mSlicerManagers[index])
2302 index = (index+offset) % mSlicerManagers.size();
2304 QTreeWidgetItem* item = GetItemFromSlicerManager(mSlicerManagers[index]);
2305 //CurrentImageChanged(mSlicerManagers[index]->GetId()); //select new image
2306 item->setData(slicer+1,Qt::CheckStateRole,2); //change checkbox
2307 DisplayChanged(item,slicer+1);
2309 //------------------------------------------------------------------------------
2311 void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
2313 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2314 if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
2315 for (int j = 0; j < 4; j++) {
2316 mSlicerManagers[i]->SetTSliceInSlicer(value,j);
2317 //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
2318 //UpdateTSlice(j,value);
2320 mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
2325 //------------------------------------------------------------------------------
2328 //------------------------------------------------------------------------------
2329 void vvMainWindow::NOHorizontalSliderMoved()
2331 // if (mCurrentTime == NOHorizontalSlider->value()) return;
2332 HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
2333 // mCurrentTime = NOHorizontalSlider->value();
2335 //------------------------------------------------------------------------------
2338 //------------------------------------------------------------------------------
2339 void vvMainWindow::NEHorizontalSliderMoved()
2341 // if (mCurrentTime == NEHorizontalSlider->value()) return;
2342 HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
2343 // mCurrentTime = NEHorizontalSlider->value();
2345 //------------------------------------------------------------------------------
2348 //------------------------------------------------------------------------------
2349 void vvMainWindow::SOHorizontalSliderMoved()
2351 // if (mCurrentTime == SOHorizontalSlider->value()) return;
2352 HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
2353 // mCurrentTime = SOHorizontalSlider->value();
2355 //------------------------------------------------------------------------------
2358 //------------------------------------------------------------------------------
2359 void vvMainWindow::SEHorizontalSliderMoved()
2361 // if (mCurrentTime == SEHorizontalSlider->value()) return;
2362 HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
2363 // mCurrentTime = SEHorizontalSlider->value();
2365 //------------------------------------------------------------------------------
2367 //------------------------------------------------------------------------------
2368 void vvMainWindow::NOVerticalSliderChanged()
2370 static int value=-1;
2371 if (value == NOVerticalSlider->value()) return;
2372 else value = NOVerticalSlider->value();
2373 // int value = NOVerticalSlider->value();
2374 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2375 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2376 if (mSlicerManagers[i]->GetSlicer(0)->GetSlice() != value) {
2377 mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
2378 mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
2380 // If nor Update/Render -> slider not work
2381 // only render = ok navigation, but for contour Update needed but slower ?
2383 mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
2384 //mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2390 //------------------------------------------------------------------------------
2393 //------------------------------------------------------------------------------
2394 void vvMainWindow::NEVerticalSliderChanged()
2396 static int value=-1;
2397 if (value == NEVerticalSlider->value()) return;
2398 else value = NEVerticalSlider->value();
2399 // int value = NEVerticalSlider->value();
2400 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2401 if (DataTree->topLevelItem(i)->data(COLUMN_UR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2402 if (mSlicerManagers[i]->GetSlicer(1)->GetSlice() != value) {
2403 mSlicerManagers[i]->GetSlicer(1)->SetSlice(value);
2404 mSlicerManagers[i]->VerticalSliderHasChanged(1, value);
2405 mSlicerManagers[i]->UpdateSlice(1);
2406 //mSlicerManagers[i]->GetSlicer(1)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2412 //------------------------------------------------------------------------------
2415 //------------------------------------------------------------------------------
2416 void vvMainWindow::SOVerticalSliderChanged()
2418 static int value=-1;
2419 if (value == SOVerticalSlider->value()) return;
2420 else value = SOVerticalSlider->value();
2421 //int value = SOVerticalSlider->value();
2422 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2423 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2424 if (mSlicerManagers[i]->GetSlicer(2)->GetSlice() != value) {
2425 mSlicerManagers[i]->GetSlicer(2)->SetSlice(value);
2426 mSlicerManagers[i]->VerticalSliderHasChanged(2, value);
2427 mSlicerManagers[i]->UpdateSlice(2);
2428 //mSlicerManagers[i]->GetSlicer(2)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2430 // else { DD("avoid SOVerticalSlider slicer update"); }
2435 //------------------------------------------------------------------------------
2438 //------------------------------------------------------------------------------
2439 void vvMainWindow::SEVerticalSliderChanged()
2441 static int value=-1;
2442 if (value == SEVerticalSlider->value()) return;
2443 else value = SEVerticalSlider->value();
2444 // int value = SEVerticalSlider->value();
2445 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2446 if (DataTree->topLevelItem(i)->data(COLUMN_DR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2447 if (mSlicerManagers[i]->GetSlicer(3)->GetSlice() != value) {
2448 mSlicerManagers[i]->GetSlicer(3)->SetSlice(value);
2449 mSlicerManagers[i]->VerticalSliderHasChanged(3, value);
2450 mSlicerManagers[i]->UpdateSlice(3);
2451 //mSlicerManagers[i]->GetSlicer(3)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2457 //------------------------------------------------------------------------------
2460 //------------------------------------------------------------------------------
2461 void vvMainWindow::UpdateSlice(int slicer, int slice)
2463 // DD("vvMainWindow::UpdateSlice");
2467 // if (slice != NOVerticalSlider->value())
2468 NOVerticalSlider->setValue(slice);
2471 NEVerticalSlider->setValue(slice);
2474 SOVerticalSlider->setValue(slice);
2477 SEVerticalSlider->setValue(slice);
2481 // DD("vvMainWindow:UpdateSlice END");
2483 //------------------------------------------------------------------------------
2486 //------------------------------------------------------------------------------
2487 void vvMainWindow::UpdateTSlice(int slicer, int slice)
2491 NOHorizontalSlider->setValue(slice);
2494 NEHorizontalSlider->setValue(slice);
2497 SOHorizontalSlider->setValue(slice);
2500 SEHorizontalSlider->setValue(slice);
2504 //------------------------------------------------------------------------------
2507 //------------------------------------------------------------------------------
2508 void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax)
2510 int position = int((min+max)/2);
2511 int tPosition = int((tmin+tmax)/2);
2513 NOVerticalSlider->setValue(position);
2514 NOVerticalSlider->setRange(min,max);
2515 NOHorizontalSlider->setRange(tmin,tmax);
2516 NOHorizontalSlider->setValue(tPosition);
2517 } else if (slicer == 1) {
2518 NEVerticalSlider->setValue(position);
2519 NEVerticalSlider->setRange(min,max);
2520 NEHorizontalSlider->setRange(tmin,tmax);
2521 NEHorizontalSlider->setValue(tPosition);
2522 } else if (slicer == 2) {
2523 SOVerticalSlider->setValue(position);
2524 SOVerticalSlider->setRange(min,max);
2525 SOHorizontalSlider->setRange(tmin,tmax);
2526 SOHorizontalSlider->setValue(tPosition);
2527 } else if (slicer == 3) {
2528 SEVerticalSlider->setValue(position);
2529 SEVerticalSlider->setRange(min,max);
2530 SEHorizontalSlider->setRange(tmin,tmax);
2531 SEHorizontalSlider->setValue(tPosition);
2534 //------------------------------------------------------------------------------
2537 //------------------------------------------------------------------------------
2538 void vvMainWindow::SaveNOScreenshot()
2540 SaveScreenshot(NOViewWidget);
2542 //------------------------------------------------------------------------------
2545 //------------------------------------------------------------------------------
2546 void vvMainWindow::SaveNEScreenshot()
2548 SaveScreenshot(NEViewWidget);
2550 //------------------------------------------------------------------------------
2553 //------------------------------------------------------------------------------
2554 void vvMainWindow::SaveSOScreenshot()
2556 SaveScreenshot(SOViewWidget);
2558 //------------------------------------------------------------------------------
2561 //------------------------------------------------------------------------------
2562 void vvMainWindow::SaveSEScreenshot()
2564 SaveScreenshot(SEViewWidget);
2566 //------------------------------------------------------------------------------
2569 //------------------------------------------------------------------------------
2570 void vvMainWindow::SaveScreenshot(QVTKWidget *widget)
2572 QString Extensions = "Images( *.png);;";
2573 Extensions += "Images( *.jpg);;";
2574 Extensions += "Images( *.bmp);;";
2575 Extensions += "Images( *.tif);;";
2576 Extensions += "Images( *.ppm)";
2577 #ifdef VTK_USE_FFMPEG_ENCODER
2578 Extensions += "Images( *.avi)";
2580 #ifdef VTK_USE_MPEG2_ENCODER
2581 Extensions += "Images( *.mpg)";
2584 int smIndex=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2585 QString fileName = QFileDialog::getSaveFileName(this,
2587 itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(),
2590 if (!fileName.isEmpty()) {
2591 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2592 w2i->SetInput(widget->GetRenderWindow());
2594 vtkImageData *image = w2i->GetOutput();
2596 const char *ext = fileName.toStdString().c_str() + strlen(fileName.toStdString().c_str()) - 4;
2597 if (!strcmp(ext, ".bmp")) {
2598 vtkBMPWriter *bmp = vtkBMPWriter::New();
2599 bmp->SetInput(image);
2600 bmp->SetFileName(fileName.toStdString().c_str());
2603 } else if (!strcmp(ext, ".tif")) {
2604 vtkTIFFWriter *tif = vtkTIFFWriter::New();
2605 tif->SetInput(image);
2606 tif->SetFileName(fileName.toStdString().c_str());
2609 } else if (!strcmp(ext, ".ppm")) {
2610 vtkPNMWriter *pnm = vtkPNMWriter::New();
2611 pnm->SetInput(image);
2612 pnm->SetFileName(fileName.toStdString().c_str());
2615 } else if (!strcmp(ext, ".png")) {
2616 vtkPNGWriter *png = vtkPNGWriter::New();
2617 png->SetInput(image);
2618 png->SetFileName(fileName.toStdString().c_str());
2621 } else if (!strcmp(ext, ".jpg")) {
2622 vtkJPEGWriter *jpg = vtkJPEGWriter::New();
2623 jpg->SetInput(image);
2624 jpg->SetFileName(fileName.toStdString().c_str());
2627 #ifdef VTK_USE_FFMPEG_ENCODER
2628 } else if (!strcmp(ext, ".avi")) {
2629 vtkFFMPEGWriter *mpg = vtkFFMPEGWriter::New();
2630 mpg->SetInput(image);
2631 mpg->SetFileName(fileName.toStdString().c_str());
2636 vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
2637 int nSlice = vvImg->GetVTKImages().size();
2638 for(int i=0; i<nSlice; i++)
2640 mSlicerManagers[smIndex]->SetNextTSlice(0);
2641 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2642 w2i->SetInput(widget->GetRenderWindow());
2644 mpg->SetInput(w2i->GetOutput());
2650 #ifdef VTK_USE_MPEG2_ENCODER
2651 } else if (!strcmp(ext, ".mpg")) {
2652 vtkMPEG2Writer *mpg = vtkMPEG2Writer::New();
2653 mpg->SetInput(image);
2654 mpg->SetFileName(fileName.toStdString().c_str());
2657 vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
2658 int nSlice = vvImg->GetVTKImages().size();
2659 for(int i=0; i<nSlice; i++)
2661 mSlicerManagers[smIndex]->SetNextTSlice(0);
2662 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2663 w2i->SetInput(widget->GetRenderWindow());
2665 mpg->SetInput(w2i->GetOutput());
2672 QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
2676 //------------------------------------------------------------------------------
2679 //------------------------------------------------------------------------------
2680 void vvMainWindow::GoToCursor()
2682 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2683 for (int column = 1; column < 5; column++) {
2684 if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1) {
2685 double* cursorPos = mSlicerManagers[index]->GetSlicer(column-1)->GetCursorPosition();
2686 mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
2687 cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
2688 mSlicerManagers[index]->UpdateViews(1,column-1);
2689 mSlicerManagers[index]->UpdateLinked(column-1);
2694 //------------------------------------------------------------------------------
2696 //------------------------------------------------------------------------------
2697 void vvMainWindow::PlayPause()
2701 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_play.png")));
2705 int image_number=DataTree->topLevelItemCount();
2707 for (int i=0; i<image_number; i++)
2708 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1) {
2714 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
2715 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2719 //------------------------------------------------------------------------------
2721 //------------------------------------------------------------------------------
2722 void vvMainWindow::PlayNext()
2724 if (playMode && !this->isHidden()) {
2725 int image_number=DataTree->topLevelItemCount();
2726 ///Only play one slicer per SM, and only if the SM is being displayed
2727 for (int i=0; i<image_number; i++)
2728 for (int j=0; j<4; j++)
2729 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1 &&
2730 DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
2731 mSlicerManagers[i]->SetNextTSlice(j);
2734 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2737 //------------------------------------------------------------------------------
2739 void vvMainWindow::ShowLastImage()
2741 if (mSlicerManagers.size() > 1) {
2742 QTreeWidgetItem * item=DataTree->topLevelItem(DataTree->topLevelItemCount()-1);
2743 CurrentImageChanged(mSlicerManagers.back()->GetId()); //select new image
2744 item->setData(1,Qt::CheckStateRole,2); //show the new image in the first panel
2745 DisplayChanged(item,1);
2749 //------------------------------------------------------------------------------
2750 void vvMainWindow::UpdateRenderWindows()
2752 if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
2753 if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
2754 if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
2755 if (SEViewWidget->GetRenderWindow()) SEViewWidget->GetRenderWindow()->Render();
2757 //------------------------------------------------------------------------------
2759 //------------------------------------------------------------------------------
2760 void vvMainWindow::SegmentationOnCurrentImage()
2762 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2764 vvSegmentationDialog segmentation;
2765 segmentation.SetImage(mSlicerManagers[index]->GetSlicer(0)->GetImage());
2766 segmentation.exec();
2768 //------------------------------------------------------------------------------
2770 void vvMainWindow::SurfaceViewerLaunch()
2772 vvSurfaceViewerDialog surfaceViewer;
2773 surfaceViewer.exec();
2775 //------------------------------------------------------------------------------
2778 //------------------------------------------------------------------------------
2779 int vvMainWindow::GetImageDuplicateFilenameNumber(std::string filename)
2782 for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
2783 vvSlicerManager * v = mSlicerManagers[l];
2784 if (v->GetBaseFileName() ==
2785 vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
2786 number = std::max(number, v->GetBaseFileNameNumber()+1);
2791 //------------------------------------------------------------------------------
2794 //------------------------------------------------------------------------------
2795 vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
2797 // Change filename if another image exist with the same name
2798 int number = GetImageDuplicateFilenameNumber(filename);
2800 // Create new SliceManager
2801 vvSlicerManager* slicer_manager = new vvSlicerManager(4);
2802 slicer_manager->SetImage(image);//, IMAGE, number);
2803 // filename = filename+"_"+clitk::toString(number);
2804 slicer_manager->SetFilename(filename, number);
2805 mSlicerManagers.push_back(slicer_manager);
2807 //create an item in the tree with good settings
2808 QTreeWidgetItem *item = new QTreeWidgetItem();
2809 item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
2810 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,slicer_manager->GetFileName().c_str());//filename.c_str());
2811 qApp->processEvents();
2813 for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1);
2815 //Create the buttons for reload and close
2816 qApp->processEvents();
2817 QTreePushButton* cButton = new QTreePushButton;
2818 cButton->setItem(item);
2819 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2820 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2821 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2822 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2824 QTreePushButton* rButton = new QTreePushButton;
2825 rButton->setItem(item);
2826 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2827 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2828 rButton->setEnabled(0);
2829 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2830 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2832 DataTree->addTopLevelItem(item);
2833 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2834 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2836 //set the id of the image
2837 QString id = slicer_manager->GetFileName().c_str() + QString::number(mSlicerManagers.size()-1);
2838 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2839 mSlicerManagers.back()->SetId(id.toStdString());
2841 linkPanel->addImage(slicer_manager->GetFileName().c_str()// filename
2842 , id.toStdString());
2844 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
2845 this, SLOT(CurrentImageChanged(std::string)));
2846 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
2847 this, SLOT(CurrentPickedImageChanged(std::string)));
2848 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
2849 this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
2850 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
2851 this, SLOT(VectorChanged(int,double,double,double, double)));
2852 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
2853 this, SLOT(OverlayChanged(int,double,double)));
2854 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
2855 this, SLOT(FusionChanged(int,double)));
2856 connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
2857 this,SLOT(WindowsChanged(int, int, int)));
2858 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
2859 this,SLOT(WindowLevelChanged(double, double, int, int)));
2860 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
2861 this,SLOT(UpdateSlice(int,int)));
2862 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
2863 this,SLOT(UpdateTSlice(int, int)));
2864 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
2865 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
2866 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
2867 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
2868 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
2869 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
2870 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
2871 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
2872 connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
2874 qApp->processEvents();
2878 qApp->processEvents();
2882 return slicer_manager;
2884 //------------------------------------------------------------------------------
2887 //------------------------------------------------------------------------------
2888 void vvMainWindow::UpdateCurrentSlicer()
2891 if (DataTree->selectedItems().size() > 0) {
2892 index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2894 mSlicerManagerCurrentIndex = index;
2896 //------------------------------------------------------------------------------