1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://www.centreleonberard.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ===========================================================================**/
20 #include <QMessageBox>
21 #include <QInputDialog>
23 #include "QTreePushButton.h"
26 #include "vvMainWindow.h"
27 #include "vvHelpDialog.h"
28 #include "vvDocumentation.h"
29 #include "vvProgressDialog.h"
30 #include "vvQDicomSeriesSelector.h"
31 #include "vvSlicerManager.h"
32 #include "clitkImageCommon.h"
34 #include "vvInteractorStyleNavigator.h"
35 #include "vvImageWriter.h"
36 #include "vvSegmentationDialog.h"
37 #include "vvSurfaceViewerDialog.h"
38 #include "vvDeformationDialog.h"
39 #include "vvImageWarp.h"
41 #include "vvMidPosition.h"
43 #include "vvStructSelector.h"
44 #include "vvMeshReader.h"
45 #include "clitkConfiguration.h"
49 #include <itkImageFileReader.h>
50 #include <itkByteSwapper.h>
51 #include <itkCommand.h>
52 #include <itkNumericSeriesFileNames.h>
55 #include <vtkImageData.h>
56 #include <vtkImageActor.h>
57 #include <vtkCornerAnnotation.h>
58 #include <vtkRenderWindow.h>
59 #include <vtkRenderWindowInteractor.h>
60 #include <vtkRenderer.h>
61 #include <vtkRendererCollection.h>
62 #include <vtkWindowToImageFilter.h>
63 #include <vtkBMPWriter.h>
64 #include <vtkTIFFWriter.h>
65 #include <vtkPNMWriter.h>
66 #include <vtkPNGWriter.h>
67 #include <vtkJPEGWriter.h>
68 #include <vtkFFMPEGWriter.h>
69 #ifdef VTK_USE_MPEG2_ENCODER
70 #include <vtkMPEG2Writer.h>
72 #include <vtkMatrix4x4.h>
73 #include <vtkTransform.h>
81 #define COLUMN_UL_VIEW 1
82 #define COLUMN_UR_VIEW 2
83 #define COLUMN_DL_VIEW 3
84 #define COLUMN_DR_VIEW 4
85 #define COLUMN_CLOSE_IMAGE 5
86 #define COLUMN_RELOAD_IMAGE 6
87 #define COLUMN_IMAGE_NAME 7
89 #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.hdr *.vox *.his *.xdr *.SCAN )"
92 0,Qt::UserRole full filename
93 1,Qt::CheckStateRole checkbutton UL View
94 1,Qt::UserRole overlay, fusion or vector
95 2,Qt::CheckStateRole checkbutton UR View
96 3,Qt::CheckStateRole checkbutton DL View
97 4,Qt::CheckStateRole checkbutton DR View
99 5,Qt::UserRole mSlicerManager id*/
101 //------------------------------------------------------------------------------
102 vvMainWindow::vvMainWindow():vvMainWindowBase()
104 setupUi(this); // this sets up the GUI
107 mMenuTools = menuTools;
108 // mMenuSegmentation = menuSegmentation;
109 mContextMenu = &contextMenu;
110 mMenuExperimentalTools = menuExperimental;
113 mCurrentSelectedImageId = "";
114 mCurrentPickedImageId = "";
115 mCurrentPickedImageIndex = 0;
117 //Init the contextMenu
118 this->setContextMenuPolicy(Qt::CustomContextMenu);
119 contextActions.resize(0);
120 QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
121 tr("O&pen new Image"));
122 actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
123 connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
124 contextActions.push_back(actionOpen_new_image);
125 contextMenu.addSeparator();
127 QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
128 tr("Close Current Image"));
129 connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
130 contextActions.push_back(actionClose_Image);
132 QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
133 tr("Reload Current Image"));
134 connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
135 contextActions.push_back(actionReload_image);
137 QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
138 tr("Save Current Image"));
139 connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
140 contextActions.push_back(actionSave_image);
142 contextMenu.addSeparator();
144 contextMenu.addAction(actionAdd_VF_to_current_Image);
145 contextActions.push_back(actionAdd_VF_to_current_Image);
147 QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
148 tr("Add overlay image to current image"));
149 contextMenu.addAction(actionAdd_Overlay_to_current_Image);
150 contextActions.push_back(actionAdd_Overlay_to_current_Image);
152 connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
154 contextMenu.addAction(actionAdd_fusion_image);
155 connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
156 contextActions.push_back(actionAdd_fusion_image);
160 QMenu * m = new QMenu(menubar);
162 // m->setObjectName(QString::fromUtf8("TOTOTO"));
163 contextMenu.addMenu(m);
164 QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
166 QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
170 connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
174 mSlicerManagers.resize(0);
184 header.append("Name");
186 DataTree->setHeaderLabels(header);
187 DataTree->resizeColumnToContents(COLUMN_TREE);
188 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
189 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
190 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
191 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
192 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
193 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
194 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
197 documentation = new vvDocumentation();
198 help_dialog = new vvHelpDialog();
199 dicomSeriesSelector = new vvDicomSeriesSelector();
201 inverseButton->setEnabled(0);
202 actionAdd_Overlay_to_current_Image->setEnabled(0);
203 actionSave_As->setEnabled(0);
204 actionAdd_VF_to_current_Image->setEnabled(0);
205 actionAdd_fusion_image->setEnabled(0);
208 verticalSliders.push_back(NOVerticalSlider);
209 verticalSliders.push_back(NEVerticalSlider);
210 verticalSliders.push_back(SOVerticalSlider);
211 verticalSliders.push_back(SEVerticalSlider);
213 for (int i =0; i < 4; i++)
214 verticalSliders[i]->hide();
216 horizontalSliders.push_back(NOHorizontalSlider);
217 horizontalSliders.push_back(NEHorizontalSlider);
218 horizontalSliders.push_back(SOHorizontalSlider);
219 horizontalSliders.push_back(SEHorizontalSlider);
221 for (int i =0; i < 4; i++)
222 horizontalSliders[i]->hide();
225 connect(NOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOVerticalSliderChanged()));
226 connect(NEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEVerticalSliderChanged()));
227 connect(SOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOVerticalSliderChanged()));
228 connect(SEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEVerticalSliderChanged()));
230 connect(NOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOHorizontalSliderMoved()));
231 connect(NEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEHorizontalSliderMoved()));
232 connect(SOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOHorizontalSliderMoved()));
233 connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved()));
236 connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition()));
237 connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration()));
238 connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
239 connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
240 connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
241 connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
242 connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
243 connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
244 connect(actionSlice_Image_As_Multiple_Images,SIGNAL(triggered()),this,SLOT(SliceImages()));
245 connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
246 connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
247 connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
248 connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
249 connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
250 connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
251 connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
253 ///////////////////////////////////////////////
254 connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
255 connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
256 ///////////////////////////////////////////////
258 actionNorth_East_Window->setEnabled(0);
259 actionNorth_West_Window->setEnabled(0);
260 actionSouth_East_Window->setEnabled(0);
261 actionSouth_West_Window->setEnabled(0);
263 connect(actionNorth_East_Window,SIGNAL(triggered()),this,SLOT(SaveNEScreenshot()));
264 connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
265 connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
266 connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
268 connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
269 connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
270 SLOT(DisplayChanged(QTreeWidgetItem*, int)));
272 connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
273 connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
274 connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
275 connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
276 connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
277 connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
278 connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages()));
281 connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
283 connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
284 connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
285 connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double)));
286 connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int)),this,SLOT(SetOverlayProperty(int)));
287 connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,double,double)),
288 this,SLOT(SetFusionProperty(int,int,double,double)));
289 connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
293 playButton->setEnabled(0);
294 frameRateLabel->setEnabled(0);
295 frameRateSpinBox->setEnabled(0);
296 connect(playButton, SIGNAL(clicked()),this,SLOT(PlayPause()));
297 connect(frameRateSpinBox, SIGNAL(valueChanged(int)),this,SLOT(ChangeFrameRate(int)));
299 goToCursorPushButton->setEnabled(0);
300 connect(goToCursorPushButton, SIGNAL(clicked()),this,SLOT(GoToCursor()));
302 NOViewWidget->hide();
303 NEViewWidget->hide();
304 SOViewWidget->hide();
305 SEViewWidget->hide();
307 //Recently opened files
308 std::list<std::string> recent_files = GetRecentlyOpenedImages();
309 if ( !recent_files.empty() ) {
310 QMenu * rmenu = new QMenu("Recently opened files...");
311 rmenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
312 menuFile->insertMenu(actionOpen_Image_With_Time,rmenu);
313 menuFile->insertSeparator(actionOpen_Image_With_Time);
314 for (std::list<std::string>::iterator i = recent_files.begin(); i!=recent_files.end(); i++) {
315 QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")),
317 rmenu->addAction(current);
318 connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage()));
322 // Adding all new tools (insertion in the menu)
323 vvToolManager::GetInstance()->InsertToolsInMenu(this);
325 if (!CLITK_EXPERIMENTAL)
326 menuExperimental->menuAction()->setVisible(false);
329 QTimer * timerMemory = new QTimer(this);
330 //timerMemory->setInterval(5);
331 connect(timerMemory, SIGNAL(timeout()), this, SLOT(UpdateMemoryUsage()));
332 timerMemory->start(2000);
335 //------------------------------------------------------------------------------
338 //------------------------------------------------------------------------------
339 void vvMainWindow::UpdateMemoryUsage()
341 // clitk::PrintMemory(true);
342 if (clitk::GetMemoryUsageInMb() == 0) infoPanel->setMemoryInMb("NA");
343 else infoPanel->setMemoryInMb(QString::number(clitk::GetMemoryUsageInMb())+" MiB");
345 //------------------------------------------------------------------------------
348 //------------------------------------------------------------------------------
349 void vvMainWindow::ComputeMidPosition()
352 int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
353 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
354 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
357 midp.slicer_manager = mSlicerManagers[index];
358 midp.reference_image_index = ref;
359 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
362 QMessageBox::warning(this, "Error computing midposition image",midp.error_message.c_str());
364 QFileInfo info(midp.slicer_manager->GetFileName().c_str());
365 AddImage(midp.output,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_midposition.mhd");
367 QApplication::restoreOverrideCursor();
370 //------------------------------------------------------------------------------
373 //------------------------------------------------------------------------------
374 void vvMainWindow::AddContour(int image_index, vvMesh::Pointer contour, bool propagation)
376 QTreeWidgetItem *item = new QTreeWidgetItem();
377 item->setData(0,Qt::UserRole,"filename.vtk");
378 item->setData(1,Qt::UserRole,tr("contour"));
380 brush.setColor(QColor(contour->r*255,contour->g*255,contour->b*255));
381 brush.setStyle(Qt::SolidPattern);
382 item->setData(COLUMN_IMAGE_NAME,Qt::BackgroundRole,brush);
383 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
385 for (int j = 1; j <= 4; j++)
386 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(image_index)->data(j,Qt::CheckStateRole));
388 QTreePushButton* cButton = new QTreePushButton;
389 cButton->setItem(item);
390 cButton->setColumn(COLUMN_CLOSE_IMAGE);
391 cButton->setToolTip(tr("close image"));
392 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
393 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
394 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
396 QTreePushButton* rButton = new QTreePushButton;
397 rButton->setItem(item);
398 rButton->setColumn(COLUMN_RELOAD_IMAGE);
399 rButton->setToolTip(tr("reload image"));
400 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
401 rButton->setEnabled(false);
403 //connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
404 //this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
406 DataTree->topLevelItem(image_index)->setExpanded(1);
407 DataTree->topLevelItem(image_index)->addChild(item);
408 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
409 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
410 QString id = DataTree->topLevelItem(image_index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
411 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
414 mSlicerManagers[image_index]->AddContour(contour,propagation);
415 mSlicerManagers[image_index]->Render();
417 //------------------------------------------------------------------------------
420 //------------------------------------------------------------------------------
421 void vvMainWindow::OpenVTKContour()
423 if (mSlicerManagers.size() > 0) {
424 QString Extensions = "Images ( *.vtk *.obj)";
425 Extensions += ";;All Files (*)";
426 QString file = QFileDialog::getOpenFileName(this,tr("Open vtkPolyData"),mInputPathName,Extensions);
429 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
430 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
432 reader.SetImage(mSlicerManagers[index]->GetImage());
433 reader.SetModeToVTK();
434 reader.SetFilename(file.toStdString());
436 AddContour(index,reader.GetOutput()[0],false);
437 QApplication::restoreOverrideCursor();
440 //------------------------------------------------------------------------------
443 //------------------------------------------------------------------------------
444 void vvMainWindow::OpenDCStructContour()
446 if (mSlicerManagers.size() > 0) {
447 QString Extensions = "Dicom Files ( *.dcm RS*)";
448 Extensions += ";;All Files (*)";
449 QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
452 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
454 reader.SetFilename(file.toStdString());
455 vvStructSelector selector;
456 selector.SetStructures(reader.GetROINames());
457 if (!mSlicerManagers[index]->GetVF().IsNull())
458 selector.EnablePropagationCheckBox();
459 if (selector.exec()) {
460 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
461 reader.SetSelectedItems(selector.getSelectedItems());
462 reader.SetImage(mSlicerManagers[index]->GetImage());
463 if (selector.PropagationEnabled())
464 reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
466 std::vector<vvMesh::Pointer> contours=reader.GetOutput();
467 for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
468 i!=contours.end(); i++)
469 AddContour(index,*i,selector.PropagationEnabled());
470 QApplication::restoreOverrideCursor();
474 //------------------------------------------------------------------------------
477 //------------------------------------------------------------------------------
478 void vvMainWindow::ComputeDeformableRegistration()
480 if (mSlicerManagers.size() > 0) {
481 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
482 vvDeformationDialog dialog(index,mSlicerManagers);
484 std::string base_name=itksys::SystemTools::GetFilenameWithoutExtension(mSlicerManagers[dialog.GetInputFileIndex()]->GetFileName());
485 AddField(dialog.GetOutput(),dialog.getFieldFile(),dialog.GetInputFileIndex());
486 WarpImage(dialog.GetSelectedSlicer(),dialog.GetReferenceFrameIndex());
488 std::cout << "Error or user cancellation while computing deformation field..." << std::endl;
489 } else QMessageBox::information(this, "Need to open image","You must open an image first.");
491 //------------------------------------------------------------------------------
494 //------------------------------------------------------------------------------
495 void vvMainWindow::WarpImage()
497 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
498 if (!mSlicerManagers[index]->GetVF().IsNull()) {
500 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
501 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
503 WarpImage(mSlicerManagers[index],ref);
506 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field"));
508 //------------------------------------------------------------------------------
511 //------------------------------------------------------------------------------
512 void vvMainWindow::WarpImage(vvSlicerManager* selected_slicer,int reference_phase)
514 if (!selected_slicer->GetVF().IsNull()) {
515 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
516 QFileInfo info(selected_slicer->GetFileName().c_str());
517 vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
518 reference_phase,this);
519 if (warp.ComputeWarpedImage()) {
520 AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
521 AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
522 AddImage(warp.GetJacobianImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_jacobian.mhd");
523 QApplication::restoreOverrideCursor();
525 QApplication::restoreOverrideCursor();
526 QMessageBox::warning(this,tr("Different spacings"),tr("The vector field and image spacings must be the same in order to warp."));
529 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field."));
531 //------------------------------------------------------------------------------
534 //------------------------------------------------------------------------------
535 vvMainWindow::~vvMainWindow()
537 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
538 if (mSlicerManagers[i] != NULL)
539 delete mSlicerManagers[i];
542 //------------------------------------------------------------------------------
544 //------------------------------------------------------------------------------
545 QTabWidget * vvMainWindow::GetTab()
549 //------------------------------------------------------------------------------
552 //------------------------------------------------------------------------------
553 void vvMainWindow::MergeImages()
555 QString Extensions = EXTENSIONS;
556 Extensions += ";;All Files (*)";
557 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images"),mInputPathName,Extensions);
560 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
561 std::vector<std::string> vector;
563 unsigned int currentDim = 0;
564 std::vector<double> currentSpacing;
565 std::vector<int> currentSize;
566 std::vector<double> currentOrigin;
568 for (int i = 0; i < files.size(); i++) {
569 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
570 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
571 reader->SetFileName(files[i].toStdString().c_str());
572 reader->ReadImageInformation();
574 //NOViewWidget->hide();
575 //NEViewWidget->hide();
576 //SOViewWidget->hide();
577 //SEViewWidget->hide();
579 currentDim = reader->GetNumberOfDimensions();
581 for (unsigned int j = 0; j < currentDim; j++) {
584 currentSpacing.resize(currentDim);
585 currentSize.resize(currentDim);
586 currentOrigin.resize(currentDim);
588 currentOrigin[j] = reader->GetOrigin(j);
589 currentSpacing[j] = reader->GetSpacing(j);
590 currentSize[j] = reader->GetDimensions(j);
591 } else if (currentDim != reader->GetNumberOfDimensions()
592 || currentSpacing[j] != reader->GetSpacing(j)
593 || currentSize[j] != (int)reader->GetDimensions(j)
594 || currentOrigin[j] != reader->GetOrigin(j)) {
595 QString error = "Cannot read file (too different from others ";
596 error += files[i].toStdString().c_str();
597 QMessageBox::information(this,tr("Reading problem"),error);
603 vector.push_back(files[i].toStdString());
606 if (vector.size() > 0)
607 LoadImages(vector, vvImageReader::MERGED);
609 //------------------------------------------------------------------------------
611 //------------------------------------------------------------------------------
612 void vvMainWindow::SliceImages()
614 QString Extensions = EXTENSIONS;
615 Extensions += ";;All Files (*)";
617 QStringList files = QFileDialog::getOpenFileNames(this,tr("Slice Images"),mInputPathName,Extensions);
620 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
621 std::vector<std::string> vector;
622 for (int i = 0; i < files.size(); i++)
623 vector.push_back(files[i].toStdString());
624 LoadImages(vector, vvImageReader::SLICED);
626 //------------------------------------------------------------------------------
628 //------------------------------------------------------------------------------
629 void vvMainWindow::MergeImagesWithTime()
631 QString Extensions = EXTENSIONS;
632 Extensions += ";;All Files (*)";
633 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images With Time"),mInputPathName,Extensions);
636 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
637 std::vector<std::string> vector;
639 unsigned int currentDim = 0;
640 std::vector<double> currentSpacing;
641 std::vector<int> currentSize;
642 std::vector<double> currentOrigin;
644 for (int i = 0; i < files.size(); i++) {
645 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
646 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
648 reader->SetFileName(files[i].toStdString().c_str());
649 reader->ReadImageInformation();
651 currentDim = reader->GetNumberOfDimensions();
653 for (unsigned int j = 0; j < currentDim; j++) {
656 currentSpacing.resize(currentDim);
657 currentSize.resize(currentDim);
658 currentOrigin.resize(currentDim);
660 currentOrigin[j] = reader->GetOrigin(j);
661 currentSpacing[j] = reader->GetSpacing(j);
662 currentSize[j] = reader->GetDimensions(j);
663 } else if (currentDim != reader->GetNumberOfDimensions()
664 || currentSpacing[j] != reader->GetSpacing(j)
665 || currentSize[j] != (int)reader->GetDimensions(j)
666 || currentOrigin[j] != reader->GetOrigin(j)) {
667 QString error = "Cannot read file (too different from others ";
668 error += files[i].toStdString().c_str();
669 QMessageBox::information(this,tr("Reading problem"),error);
675 vector.push_back(files[i].toStdString());
677 QString error = "Cannot read file info for ";
678 error += files[i].toStdString().c_str();
680 error += "Maybe you're trying to open an image in an unsupported format?\n";
681 QMessageBox::information(this,tr("Reading problem"),error);
684 sort(vector.begin(),vector.end());
685 if (vector.size() > 1)
686 LoadImages(vector, vvImageReader::MERGEDWITHTIME);
688 QMessageBox::warning(this,tr("Reading problem"),"You need to select at least two images to merge images with time.\nIf you only want to open one image, please use the \"Open Image\" function.");
690 //------------------------------------------------------------------------------
693 //------------------------------------------------------------------------------
694 void vvMainWindow::OpenDicom()
696 std::vector<std::string> files;
698 std::cout << "dicomSeriesSelector " << std::endl;
699 if (dicomSeriesSelector->exec() == QDialog::Accepted) {
700 files = *(dicomSeriesSelector->GetFilenames());
701 LoadImages(files, vvImageReader::DICOM);
704 //------------------------------------------------------------------------------
706 //------------------------------------------------------------------------------
707 void vvMainWindow::OpenImages()
709 QString Extensions = EXTENSIONS;
710 Extensions += ";;All Files (*)";
712 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images"),mInputPathName,Extensions);
715 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
716 std::vector<std::string> vector;
717 for (int i = 0; i < files.size(); i++)
718 vector.push_back(files[i].toStdString());
719 LoadImages(vector, vvImageReader::IMAGE);
721 //------------------------------------------------------------------------------
722 void vvMainWindow::OpenRecentImage()
724 QAction * caller = qobject_cast<QAction*>(sender());
725 std::vector<std::string> images;
726 images.push_back(caller->text().toStdString());
727 mInputPathName = itksys::SystemTools::GetFilenamePath(images[0]).c_str();
728 LoadImages(images, vvImageReader::IMAGE);
730 //------------------------------------------------------------------------------
733 //------------------------------------------------------------------------------
734 void vvMainWindow::OpenImageWithTime()
736 QString Extensions = EXTENSIONS;
737 Extensions += ";;All Files (*)";
739 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images With Time"),mInputPathName,Extensions);
742 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
743 std::vector<std::string> vector;
744 for (int i = 0; i < files.size(); i++) {
745 vector.push_back(files[i].toStdString());
747 LoadImages(vector, vvImageReader::IMAGEWITHTIME);
749 //------------------------------------------------------------------------------
752 //------------------------------------------------------------------------------
753 void vvMainWindow::LoadImages(std::vector<std::string> files, vvImageReader::LoadedImageType filetype)
755 //Separate the way to open images and dicoms
757 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME)
758 fileSize = files.size();
762 // For SLICED, we need the number of slices (ndim and #slices)
763 std::vector<unsigned int> nSlices;
764 nSlices.resize(files.size());
765 std::fill(nSlices.begin(), nSlices.end(), 1);
766 if (filetype == vvImageReader::SLICED) {
767 for (int i = 0; i < fileSize; i++) {
768 itk::ImageIOBase::Pointer header = clitk::readImageHeader(files[i]);
769 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
772 QString error = "Cannot open file \n";
773 error += files[i].c_str();
774 QMessageBox::information(this,tr("Reading problem"),error);
777 if (header->GetNumberOfDimensions() < 3) {
779 QString error = "Dimension problem. Cannot slice \n";
780 error += files[i].c_str();
781 QMessageBox::information(this,tr("Reading problem"),error);
784 nSlices[i] = header->GetDimensions( header->GetNumberOfDimensions()-1 );
788 //Only add to the list of recently opened files when a single file is opened,
789 //to avoid polluting the list of recently opened files
790 if (files.size() == 1) {
791 QFileInfo finfo=tr(files[0].c_str());
792 AddToRecentlyOpenedImages(finfo.absoluteFilePath().toStdString());
794 //init the progress events
795 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
796 vvProgressDialog progress("Opening " + files[0],fileSize>1);
797 qApp->processEvents();
799 int numberofsuccesulreads=0;
800 //open images as 1 or multiples
801 for (int i = 0; i < fileSize; i++) {
803 progress.SetText("Opening " + files[i]);
804 progress.SetProgress(i,fileSize);
805 qApp->processEvents();
807 for (unsigned int j = 0; j < nSlices[i]; j++) {
808 //read the image and put it in mSlicerManagers
809 vvSlicerManager* imageManager = new vvSlicerManager(4);
810 qApp->processEvents();
812 bool SetImageSucceed=false;
814 // Change filename if an image with the same already exist
815 int number = GetImageDuplicateFilenameNumber(files[i] + std::string("_slice"));
817 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME || filetype == vvImageReader::SLICED)
818 SetImageSucceed = imageManager->SetImage(files[i],filetype, number, j);
820 SetImageSucceed = imageManager->SetImages(files,filetype, number);
822 if (!SetImageSucceed) {
823 QApplication::restoreOverrideCursor();
824 QString error = "Cannot open file \n";
825 error += imageManager->GetLastError().c_str();
826 QMessageBox::information(this,tr("Reading problem"),error);
829 mSlicerManagers.push_back(imageManager);
831 //create an item in the tree with good settings
832 QTreeWidgetItem *item = new QTreeWidgetItem();
833 item->setData(0,Qt::UserRole,files[i].c_str());
834 QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
835 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
836 item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
837 qApp->processEvents();
839 //Create the buttons for reload and close
840 qApp->processEvents();
841 QTreePushButton* cButton = new QTreePushButton;
842 cButton->setItem(item);
843 cButton->setColumn(COLUMN_CLOSE_IMAGE);
844 cButton->setToolTip(tr("close image"));
845 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
846 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
847 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
849 QTreePushButton* rButton = new QTreePushButton;
850 rButton->setItem(item);
851 rButton->setColumn(COLUMN_RELOAD_IMAGE);
852 rButton->setToolTip(tr("reload image"));
853 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
854 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
855 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
857 DataTree->addTopLevelItem(item);
858 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
859 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
861 //set the id of the image
862 QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
863 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
864 mSlicerManagers.back()->SetId(id.toStdString());
866 linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
868 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
869 this,SLOT(CurrentImageChanged(std::string)));
870 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
871 this, SLOT(CurrentPickedImageChanged(std::string)));
872 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
873 this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
874 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
875 this, SLOT(VectorChanged(int,double,double,double, double)));
876 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
877 this, SLOT(OverlayChanged(int,double,double)));
878 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
879 this, SLOT(FusionChanged(int,double)));
880 connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
881 this,SLOT(WindowsChanged(int, int, int)));
882 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
883 this,SLOT(WindowLevelChanged(double, double, int, int)));
884 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
885 this,SLOT(UpdateSlice(int,int)));
886 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
887 this,SLOT(UpdateTSlice(int, int)));
888 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
889 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
890 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
891 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
892 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
893 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
894 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
895 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
896 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
898 numberofsuccesulreads++;
902 if (numberofsuccesulreads) {
903 NOViewWidget->show();
904 NEViewWidget->show();
905 SOViewWidget->show();
906 SEViewWidget->show();
911 // Try to guess default WindowLevel
913 mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
914 if ((range[0] == 0) && (range[1] == 1)) {
915 presetComboBox->setCurrentIndex(5);// binary
920 QApplication::restoreOverrideCursor();
922 //------------------------------------------------------------------------------
924 //------------------------------------------------------------------------------
925 void vvMainWindow::UpdateTree()
927 DataTree->resizeColumnToContents(COLUMN_TREE);
928 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
929 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
930 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
931 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
932 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
933 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
934 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
936 //------------------------------------------------------------------------------
938 //------------------------------------------------------------------------------
939 void vvMainWindow::CurrentImageChanged(std::string id)
941 if (id == mCurrentSelectedImageId) return; // Do nothing
943 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
944 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
947 DataTree->topLevelItem(i)->setSelected(0);
949 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
950 DataTree->topLevelItem(i)->child(child)->setSelected(0);
953 DataTree->topLevelItem(selected)->setSelected(1);
954 mCurrentSelectedImageId = id;
955 emit SelectedImageHasChanged(mSlicerManagers[selected]);
957 //------------------------------------------------------------------------------
959 //------------------------------------------------------------------------------
960 void vvMainWindow::CurrentPickedImageChanged(std::string id)
962 if (id == mCurrentPickedImageId) return; // Do nothing
964 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
965 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
968 DataTree->topLevelItem(i)->setSelected(0);
970 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
971 DataTree->topLevelItem(i)->child(child)->setSelected(0);
974 DataTree->topLevelItem(selected)->setSelected(1);
975 mCurrentPickedImageId = id;
976 mCurrentPickedImageIndex = selected;
978 //------------------------------------------------------------------------------
980 //------------------------------------------------------------------------------
981 void vvMainWindow::ImageInfoChanged()
983 contextActions[6]->setEnabled(1);
984 contextActions[5]->setEnabled(1);
985 actionSave_As->setEnabled(1);
986 actionAdd_VF_to_current_Image->setEnabled(1);
987 actionAdd_fusion_image->setEnabled(1);
988 actionNorth_East_Window->setEnabled(1);
989 actionNorth_West_Window->setEnabled(1);
990 actionSouth_East_Window->setEnabled(1);
991 actionSouth_West_Window->setEnabled(1);
992 inverseButton->setEnabled(1);
994 goToCursorPushButton->setEnabled(1);
996 if (DataTree->selectedItems().size()) {
997 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
999 colorMapComboBox->setEnabled(1);
1000 for (int i = 0; i < DataTree->topLevelItem(index)->childCount(); i++) {
1001 if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
1002 DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion") {
1003 colorMapComboBox->setEnabled(0);
1008 std::vector<double> origin;
1009 std::vector<double> inputSpacing;
1010 std::vector<int> inputSize;
1011 std::vector<double> sizeMM;
1012 vtkSmartPointer<vtkMatrix4x4> transformation;
1015 QString inputSizeInBytes;
1016 QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1018 if (mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size() > 1 || playMode == 1) {
1019 playButton->setEnabled(1);
1020 frameRateLabel->setEnabled(1);
1021 frameRateSpinBox->setEnabled(1);
1023 playButton->setEnabled(0);
1024 frameRateLabel->setEnabled(0);
1025 frameRateSpinBox->setEnabled(0);
1031 vvImage::Pointer imageSelected;
1032 if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
1033 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1034 dimension = imageSelected->GetNumberOfDimensions();
1035 origin.resize(dimension);
1036 inputSpacing.resize(dimension);
1037 inputSize.resize(dimension);
1038 sizeMM.resize(dimension);
1039 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1040 for (int i = 0; i < dimension; i++) {
1041 origin[i] = imageSelected->GetOrigin()[i];
1042 inputSpacing[i] = imageSelected->GetSpacing()[i];
1043 inputSize[i] = imageSelected->GetSize()[i];
1044 sizeMM[i] = inputSize[i]*inputSpacing[i];
1045 NPixel *= inputSize[i];
1047 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1048 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
1049 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
1050 dimension = imageSelected->GetNumberOfDimensions();
1051 origin.resize(dimension);
1052 inputSpacing.resize(dimension);
1053 inputSize.resize(dimension);
1054 sizeMM.resize(dimension);
1055 pixelType = mSlicerManagers[index]->GetVF()->GetScalarTypeAsITKString().c_str();
1056 for (int i = 0; i < dimension; i++) {
1057 origin[i] = imageSelected->GetOrigin()[i];
1058 inputSpacing[i] = imageSelected->GetSpacing()[i];
1059 inputSize[i] = imageSelected->GetSize()[i];
1060 sizeMM[i] = inputSize[i]*inputSpacing[i];
1061 NPixel *= inputSize[i];
1063 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1064 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
1065 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
1066 dimension = imageSelected->GetNumberOfDimensions();
1067 origin.resize(dimension);
1068 inputSpacing.resize(dimension);
1069 inputSize.resize(dimension);
1070 sizeMM.resize(dimension);
1071 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1072 for (int i = 0; i < dimension; i++) {
1073 origin[i] = imageSelected->GetOrigin()[i];
1074 inputSpacing[i] = imageSelected->GetSpacing()[i];
1075 inputSize[i] = imageSelected->GetSize()[i];
1076 sizeMM[i] = inputSize[i]*inputSpacing[i];
1077 NPixel *= inputSize[i];
1079 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1080 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
1081 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
1082 dimension = imageSelected->GetNumberOfDimensions();
1083 origin.resize(dimension);
1084 inputSpacing.resize(dimension);
1085 inputSize.resize(dimension);
1086 sizeMM.resize(dimension);
1087 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1088 for (int i = 0; i < dimension; i++) {
1089 origin[i] = imageSelected->GetOrigin()[i];
1090 inputSpacing[i] = imageSelected->GetSpacing()[i];
1091 inputSize[i] = imageSelected->GetSize()[i];
1092 sizeMM[i] = inputSize[i]*inputSpacing[i];
1093 NPixel *= inputSize[i];
1095 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1098 QString dim = QString::number(dimension) + " (";
1099 dim += pixelType + ")";
1101 infoPanel->setFileName(image);
1102 infoPanel->setDimension(dim);
1103 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1104 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1105 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1106 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1107 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1108 transformation = imageSelected->GetTransform()->GetMatrix();
1109 infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
1111 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1112 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1113 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1114 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1116 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1117 for (int i = 0; i < 4; i++) {
1118 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1119 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1123 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1124 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1125 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1126 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1128 infoPanel->setFileName(image);
1129 infoPanel->setDimension(dim);
1130 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1131 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1132 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1133 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1134 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1136 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1137 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1138 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1139 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1141 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1142 for (int i = 0; i < 4; i++) {
1143 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1144 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1148 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1149 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1150 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1151 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1153 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
1154 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1155 overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
1156 mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
1157 mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
1159 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1160 overlayPanel->getVFProperty(-1,-1,-1);
1162 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
1163 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1164 overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor());
1166 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1167 overlayPanel->getOverlayProperty(-1);
1169 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
1170 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1171 overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
1172 mSlicerManagers[index]->GetFusionColorMap(),
1173 mSlicerManagers[index]->GetFusionWindow(),
1174 mSlicerManagers[index]->GetFusionLevel());
1176 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1177 overlayPanel->getFusionProperty(-1, -1,-1,-1);
1181 //------------------------------------------------------------------------------
1183 //------------------------------------------------------------------------------
1184 void vvMainWindow::ShowDocumentation()
1186 documentation->show();
1188 //------------------------------------------------------------------------------
1189 void vvMainWindow::ShowHelpDialog()
1191 help_dialog->show();
1193 //------------------------------------------------------------------------------
1195 //------------------------------------------------------------------------------
1196 void vvMainWindow::ChangeViewMode()
1198 QListIterator<int> it0(splitter_3->sizes());
1199 QListIterator<int> it1(splitter_3->sizes());
1202 while (it0.hasNext()) {
1205 while (it1.hasNext()) {
1210 if (viewMode == 1) {
1212 size0.push_back(max0);
1214 size1.push_back(max1);
1216 splitter_3->setSizes(size0);
1217 OSplitter->setSizes(size1);
1218 DataTree->setColumnHidden(2,1);
1219 DataTree->setColumnHidden(3,1);
1220 DataTree->setColumnHidden(4,1);
1223 size0.push_back(int(max0/2));
1224 size0.push_back(int(max0/2));
1225 size1.push_back(int(max1/2));
1226 size1.push_back(int(max1/2));
1227 splitter_3->setSizes(size0);
1228 OSplitter->setSizes(size1);
1229 DataTree->setColumnHidden(2,0);
1230 DataTree->setColumnHidden(3,0);
1231 DataTree->setColumnHidden(4,0);
1234 //------------------------------------------------------------------------------
1236 //------------------------------------------------------------------------------
1237 QString vvMainWindow::GetSizeInBytes(unsigned long size)
1239 QString result = "";// QString::number(size);
1240 //result += " bytes (";
1241 if (size > 1000000000) {
1243 result += QString::number(size);
1244 result += "Gb";//)";
1245 } else if (size > 1000000) {
1247 result += QString::number(size);
1248 result += "Mb";//)";
1249 } else if (size > 1000) {
1251 result += QString::number(size);
1252 result += "kb";//)";
1256 //------------------------------------------------------------------------------
1258 //------------------------------------------------------------------------------
1259 QString vvMainWindow::Get4x4MatrixDoubleAsString(vtkSmartPointer<vtkMatrix4x4> matrix)
1261 std::ostringstream strmatrix;
1263 for (unsigned int i = 0; i < 4; i++) {
1264 for (unsigned int j = 0; j < 4; j++) {
1265 strmatrix.flags(ios::showpos);
1266 strmatrix.width(10);
1267 strmatrix.precision(3);
1268 strmatrix.setf(ios::fixed,ios::floatfield);
1269 strmatrix.fill(' ');
1270 strmatrix << std::left << matrix->GetElement(i, j);
1271 //strmatrix.width(10);
1274 strmatrix << std::endl;
1276 QString result = strmatrix.str().c_str();
1279 //------------------------------------------------------------------------------
1281 //------------------------------------------------------------------------------
1282 QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble)
1285 for (unsigned int i= 0; i < vectorDouble.size(); i++) {
1288 result += QString::number(vectorDouble[i]);
1292 //------------------------------------------------------------------------------
1294 //------------------------------------------------------------------------------
1295 QString vvMainWindow::GetVectorIntAsString(std::vector<int> vectorInt)
1298 for (unsigned int i= 0; i < vectorInt.size(); i++) {
1301 result += QString::number(vectorInt[i]);
1305 //------------------------------------------------------------------------------
1307 //------------------------------------------------------------------------------
1308 int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item)
1310 QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1311 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1312 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1317 //------------------------------------------------------------------------------
1319 //------------------------------------------------------------------------------
1320 QTreeWidgetItem* vvMainWindow::GetItemFromSlicerManager(vvSlicerManager* sm)
1322 QString id = sm->GetId().c_str();
1323 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1324 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1325 return DataTree->topLevelItem(i);
1329 //------------------------------------------------------------------------------
1331 //------------------------------------------------------------------------------
1332 void vvMainWindow::DisplayChanged(QTreeWidgetItem *clicked_item, int column)
1334 int index = GetSlicerIndexFromItem(clicked_item);
1335 if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
1337 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1338 //Trick to avoid redoing twice the job for a key (sr)
1339 mSlicerManagers[i]->GetSlicer(column-1)->GetRenderWindow()-> GetInteractor()->SetKeySym("Crap");
1341 QTreeWidgetItem* current_row=DataTree->topLevelItem(i);
1342 if (DataTree->topLevelItem(index) == current_row) {
1343 vvSlicer* clicked_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1344 if (current_row == clicked_item) {
1345 //If we just activated a slicer
1346 if (current_row->data(column,Qt::CheckStateRole).toInt() > 0) {
1347 mSlicerManagers[i]->UpdateSlicer(column-1,clicked_item->data(column,Qt::CheckStateRole).toInt());
1348 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1349 DisplaySliders(i,column-1);
1350 std::map<std::string,int> overlay_counts;
1351 for (int child = 0; child < current_row->childCount(); child++) {
1352 std::string overlay_type =
1353 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1354 overlay_counts[overlay_type]++;
1355 current_row->child(child)->setData(column,Qt::CheckStateRole,
1356 current_row->data(column,Qt::CheckStateRole));
1357 clicked_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,true);
1359 } else { //We don't allow simply desactivating a slicer
1360 clicked_item->setData(column,Qt::CheckStateRole,2);
1364 //if we clicked on the vector(or overlay) and not the image
1366 if (clicked_item->data(column,Qt::CheckStateRole).toInt()) {
1367 current_row->setData(column,Qt::CheckStateRole,2);
1368 mSlicerManagers[i]->UpdateSlicer(column-1,2);
1369 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1370 DisplaySliders(i,column-1);
1372 int vis = clicked_item->data(column,Qt::CheckStateRole).toInt();
1373 std::string overlay_type = clicked_item->data(1,Qt::UserRole).toString().toStdString();
1374 int overlay_index=0;
1375 for (int child = 0; child < current_row->childCount(); child++) {
1376 if (current_row->child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1378 if (current_row->child(child) == clicked_item) break;
1380 clicked_slicer->SetActorVisibility(
1381 clicked_item->data(1,Qt::UserRole).toString().toStdString(), overlay_index-1,vis);
1383 } else if (current_row->data(column,Qt::CheckStateRole).toInt() > 0) {
1384 current_row->setData(column,Qt::CheckStateRole,0);
1385 mSlicerManagers[i]->UpdateSlicer(column-1,0);
1386 std::map<std::string,int> overlay_counts;
1387 for (int child = 0; child < current_row->childCount(); child++) {
1388 std::string overlay_type =
1389 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1390 overlay_counts[overlay_type]++;
1391 current_row->child(child)->setData(column,Qt::CheckStateRole,0);
1392 vvSlicer * current_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1393 current_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,false);
1396 //mSlicerManagers[i]->SetColorMap(-1);
1397 mSlicerManagers[i]->SetColorMap();
1399 mSlicerManagers[index]->GetSlicer(column-1)->Render();
1401 //------------------------------------------------------------------------------
1403 void vvMainWindow::InitSlicers()
1405 if (mSlicerManagers.size()) {
1406 mSlicerManagers.back()->GenerateDefaultLookupTable();
1408 mSlicerManagers.back()->SetSlicerWindow(0,NOViewWidget->GetRenderWindow());
1409 mSlicerManagers.back()->SetSlicerWindow(1,NEViewWidget->GetRenderWindow());
1410 mSlicerManagers.back()->SetSlicerWindow(2,SOViewWidget->GetRenderWindow());
1411 mSlicerManagers.back()->SetSlicerWindow(3,SEViewWidget->GetRenderWindow());
1415 //------------------------------------------------------------------------------
1416 void vvMainWindow::InitDisplay()
1418 if (mSlicerManagers.size()) {
1419 //BE CAREFUL : this is absolutely necessary to set the interactor style
1420 //in order to have the same style instanciation for all SlicerManagers in
1422 for (int j = 0; j < 4; j++) {
1423 vvInteractorStyleNavigator* style = vvInteractorStyleNavigator::New();
1424 style->SetAutoAdjustCameraClippingRange(1);
1425 bool AlreadySelected = false;
1426 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1427 mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
1429 //select the image only if previous are not selected
1430 if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1) {
1431 mSlicerManagers[i]->UpdateSlicer(j,1);
1432 AlreadySelected = true;
1433 } else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected) {
1434 if (DataTree->selectedItems().size() == 0)
1435 DataTree->topLevelItem(i)->setSelected(1);
1436 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
1437 mSlicerManagers[i]->UpdateSlicer(j,1);
1438 DisplaySliders(i,j);
1440 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,0);
1441 mSlicerManagers[i]->UpdateSlicer(j,0);
1448 //------------------------------------------------------------------------------
1450 //------------------------------------------------------------------------------
1451 void vvMainWindow::DisplaySliders(int slicer, int window)
1454 mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
1455 int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
1459 tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
1460 int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetTSlice();
1461 bool showHorizontal = false;
1462 bool showVertical = false;
1463 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1464 || (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 2
1465 && mSlicerManagers[slicer]->GetType() != vvImageReader::IMAGEWITHTIME
1466 && mSlicerManagers[slicer]->GetType() != vvImageReader::MERGEDWITHTIME))
1467 showVertical = true;
1468 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1469 || mSlicerManagers[slicer]->GetType() == vvImageReader::IMAGEWITHTIME
1470 || mSlicerManagers[slicer]->GetType() == vvImageReader::MERGEDWITHTIME)
1471 showHorizontal = true;
1474 verticalSliders[window]->show();
1476 verticalSliders[window]->hide();
1477 verticalSliders[window]->setRange(range[0],range[1]);
1478 verticalSliders[window]->setValue(position);
1481 horizontalSliders[window]->show();
1483 horizontalSliders[window]->hide();
1484 horizontalSliders[window]->setRange(tRange[0],tRange[1]);
1485 horizontalSliders[window]->setValue(tPosition);
1487 //------------------------------------------------------------------------------
1489 //------------------------------------------------------------------------------
1490 void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column)
1492 int index = GetSlicerIndexFromItem(item);
1494 if (DataTree->topLevelItem(index) != item) {
1495 QString warning = "Do you really want to close the overlay : ";
1496 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1497 QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
1499 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1500 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1501 if (msgBox.exec() == QMessageBox::AcceptRole) {
1502 std::string overlay_type=item->data(1,Qt::UserRole).toString().toStdString();
1503 int overlay_index=0;
1504 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++) {
1505 if (DataTree->topLevelItem(index)->\
1506 child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1508 if (DataTree->topLevelItem(index)->child(child) == item) break;
1510 mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
1511 mSlicerManagers[index]->SetColorMap(0);
1512 DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
1513 mSlicerManagers[index]->Render();
1515 } else if (DataTree->topLevelItemCount() <= 1) {
1516 QString warning = "Do you really want to close the image : ";
1517 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1518 warning += "\nThis is the last image, you're about to close vv !!!";
1519 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1521 msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
1522 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1523 if (msgBox.exec() == QMessageBox::AcceptRole) {
1527 QString warning = "Do you really want to close the image : ";
1528 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1529 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1531 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1532 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1533 if (msgBox.exec() == QMessageBox::AcceptRole) {
1535 // Tell tools that we close an image
1536 emit AnImageIsBeingClosed(mSlicerManagers[index]);
1538 std::vector<vvSlicerManager*>::iterator Manageriter = mSlicerManagers.begin();
1539 DataTree->takeTopLevelItem(index);
1540 for (int i = 0; i < index; i++) {
1543 linkPanel->removeImage(index);
1544 mSlicerManagers[index]->RemoveActors();
1545 delete mSlicerManagers[index];
1546 mSlicerManagers.erase(Manageriter);
1554 //------------------------------------------------------------------------------
1556 //------------------------------------------------------------------------------
1557 void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column)
1559 // int index = GetSlicerIndexFromItem(item);
1560 // QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1561 // if (item->data(1,Qt::UserRole).toString() == "vector")
1562 // mSlicerManagers[index]->ReloadVF();
1564 // mSlicerManagers[index]->Reload();
1566 // QApplication::restoreOverrideCursor();
1567 int index = GetSlicerIndexFromItem(item);
1568 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1569 QString role=item->data(1,Qt::UserRole).toString();
1570 if ( role == "vector")
1571 mSlicerManagers[index]->ReloadVF();
1572 else if (role == "overlay")
1573 mSlicerManagers[index]->ReloadOverlay();
1574 else if (role == "fusion")
1575 mSlicerManagers[index]->ReloadFusion();
1577 mSlicerManagers[index]->Reload();
1579 // Update view and info
1581 mSlicerManagers[index]->Render();
1582 QApplication::restoreOverrideCursor();
1584 //------------------------------------------------------------------------------
1586 //------------------------------------------------------------------------------
1587 void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value)
1589 infoPanel->setCurrentInfo(visibility,x,y,z,X,Y,Z,value);
1591 //------------------------------------------------------------------------------
1593 //------------------------------------------------------------------------------
1594 void vvMainWindow::VectorChanged(int visibility,double x, double y, double z, double value)
1596 overlayPanel->getCurrentVectorInfo(visibility,x,y,z,value);
1598 //------------------------------------------------------------------------------
1600 //------------------------------------------------------------------------------
1601 void vvMainWindow::OverlayChanged(int visibility, double valueOver, double valueRef)
1603 overlayPanel->getCurrentOverlayInfo(visibility,valueOver, valueRef);
1605 //------------------------------------------------------------------------------
1607 //------------------------------------------------------------------------------
1608 void vvMainWindow::FusionChanged(int visibility, double value)
1610 overlayPanel->getCurrentFusionInfo(visibility,value);
1612 //------------------------------------------------------------------------------
1614 //------------------------------------------------------------------------------
1615 void vvMainWindow::WindowsChanged(int window, int view, int slice)
1617 infoPanel->setViews(window, view, slice);
1619 //------------------------------------------------------------------------------
1621 //------------------------------------------------------------------------------
1622 void vvMainWindow::WindowLevelChanged(double window, double level,int preset,int colormap)
1624 windowSpinBox->setValue(window);
1625 levelSpinBox->setValue(level);
1626 colorMapComboBox->setCurrentIndex(colormap);
1627 presetComboBox->setCurrentIndex(preset);
1629 //------------------------------------------------------------------------------
1631 //------------------------------------------------------------------------------
1632 void vvMainWindow::WindowLevelEdited()
1634 presetComboBox->setCurrentIndex(6);
1635 UpdateWindowLevel();
1637 //------------------------------------------------------------------------------
1639 //------------------------------------------------------------------------------
1640 void vvMainWindow::UpdateWindowLevel()
1642 if (DataTree->selectedItems().size()) {
1643 if (presetComboBox->currentIndex() == 7) //For ventilation
1644 colorMapComboBox->setCurrentIndex(5);
1645 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1646 mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
1647 mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
1648 mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
1649 mSlicerManagers[index]->Render();
1650 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1651 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1654 //------------------------------------------------------------------------------
1656 //------------------------------------------------------------------------------
1657 void vvMainWindow::UpdateColorMap()
1659 if (DataTree->selectedItems().size()) {
1660 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1661 mSlicerManagers[index]->SetColorMap(colorMapComboBox->currentIndex());
1662 mSlicerManagers[index]->Render();
1665 //------------------------------------------------------------------------------
1666 void vvMainWindow::SwitchWindowLevel()
1668 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1669 int window = mSlicerManagers[index]->GetColorWindow();
1670 presetComboBox->setCurrentIndex(6);
1671 windowSpinBox->setValue(-window);
1672 UpdateWindowLevel();
1674 //------------------------------------------------------------------------------
1676 //------------------------------------------------------------------------------
1677 void vvMainWindow::ApplyWindowLevelToAllImages()
1679 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1680 if (mSlicerManagers[i] == NULL)
1682 mSlicerManagers[i]->SetColorWindow(windowSpinBox->value());
1683 mSlicerManagers[i]->SetColorLevel(levelSpinBox->value());
1684 mSlicerManagers[i]->SetPreset(6);
1685 mSlicerManagers[i]->Render();
1688 //------------------------------------------------------------------------------
1690 //------------------------------------------------------------------------------
1691 void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
1693 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1694 if (mSlicerManagers[i]->GetId() == id) {
1695 //mSlicerManagers[i]->SetTSlice(temps);
1696 mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
1697 mSlicerManagers[i]->UpdateViews(0,slicer);
1702 //------------------------------------------------------------------------------
1704 //------------------------------------------------------------------------------
1705 void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm, vvSlicer* refSlicer)
1707 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1708 if (id == mSlicerManagers[i]->GetId()) {
1709 mSlicerManagers[i]->UpdateLinkedNavigation(refSlicer);
1713 //------------------------------------------------------------------------------
1715 //------------------------------------------------------------------------------
1716 void vvMainWindow::ShowContextMenu(QPoint point)
1718 if (!DataTree->selectedItems().size()) {
1719 contextActions[1]->setEnabled(0);
1720 contextActions[2]->setEnabled(0);
1721 contextActions[3]->setEnabled(0);
1722 contextActions[4]->setEnabled(0);
1723 contextActions[5]->setEnabled(0);
1724 contextActions[6]->setEnabled(0);
1726 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1727 contextActions[1]->setEnabled(1);
1728 contextActions[2]->setEnabled(
1729 DataTree->itemWidget(DataTree->selectedItems()[0],
1730 COLUMN_RELOAD_IMAGE)->isEnabled());
1731 contextActions[3]->setEnabled(1);
1732 contextActions[5]->setEnabled(1);
1733 contextActions[6]->setEnabled(1);
1735 if (mSlicerManagers[index]->GetDimension() < 3)
1736 contextActions[4]->setEnabled(0);
1738 contextActions[4]->setEnabled(1);
1740 contextMenu.exec(QCursor::pos());
1742 //------------------------------------------------------------------------------
1744 //------------------------------------------------------------------------------
1745 void vvMainWindow::CloseImage()
1747 CloseImage(DataTree->selectedItems()[0],0);
1749 //------------------------------------------------------------------------------
1751 //------------------------------------------------------------------------------
1752 void vvMainWindow::ReloadImage()
1754 ReloadImage(DataTree->selectedItems()[0],0);
1756 //------------------------------------------------------------------------------
1758 //------------------------------------------------------------------------------
1759 void vvMainWindow::SelectOverlayImage()
1761 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1763 //check if one overlay image is added
1764 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1765 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay") {
1766 QString error = "Cannot add more than one compared image\n";
1767 error += "Please remove first ";
1768 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1769 QMessageBox::information(this,tr("Problem adding compared image !"),error);
1773 QString Extensions = EXTENSIONS;
1774 Extensions += ";;All Files (*)";
1775 QString file = QFileDialog::getOpenFileName(this,tr("Load Overlay image"),mInputPathName,Extensions);
1776 if (!file.isEmpty())
1777 AddOverlayImage(index,file);
1779 //------------------------------------------------------------------------------
1781 //------------------------------------------------------------------------------
1782 void vvMainWindow::AddOverlayImage(int index, QString file)
1785 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1786 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1787 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1788 reader->SetFileName(file.toStdString().c_str());
1789 reader->ReadImageInformation();
1790 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1791 int dimension = reader->GetNumberOfDimensions();
1792 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1793 vvProgressDialog progress("Opening " + file.toStdString());
1794 qApp->processEvents();
1796 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1797 if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component)) {
1798 //create an item in the tree with good settings
1799 QTreeWidgetItem *item = new QTreeWidgetItem();
1800 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1801 item->setData(1,Qt::UserRole,tr("overlay"));
1802 QFileInfo fileinfo(file); //Do not show the path
1803 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
1804 item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
1805 qApp->processEvents();
1807 for (int j = 1; j <= 4; j++) {
1808 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1809 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("overlay",0,
1810 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1813 //Create the buttons for reload and close
1814 qApp->processEvents();
1815 QTreePushButton* cButton = new QTreePushButton;
1816 cButton->setItem(item);
1817 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1818 cButton->setToolTip(tr("close image"));
1819 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1820 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1821 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1823 QTreePushButton* rButton = new QTreePushButton;
1824 rButton->setItem(item);
1825 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1826 rButton->setToolTip(tr("reload image"));
1827 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1828 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1829 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1831 DataTree->topLevelItem(index)->setExpanded(1);
1832 DataTree->topLevelItem(index)->addChild(item);
1833 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1834 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1836 //set the id of the image
1837 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1838 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1840 qApp->processEvents();
1842 QApplication::restoreOverrideCursor();
1844 QApplication::restoreOverrideCursor();
1845 QString error = "Cannot import the new image.\n";
1846 error += mSlicerManagers[index]->GetLastError().c_str();
1847 QMessageBox::information(this,tr("Problem reading image !"),error);
1850 //------------------------------------------------------------------------------
1853 //------------------------------------------------------------------------------
1854 void vvMainWindow::AddROI(int index, QString file)
1857 // Get slice manager
1861 vvImageReader * mReader = new vvImageReader;
1862 mReader->SetInputFilename(filename.toStdString());
1863 mReader->Update(IMAGE);
1864 if (mReader->GetLastError().size() != 0) {
1865 std::cerr << "Error while reading " << filename.toStdString() << std::endl;
1866 QString error = "Cannot open file \n";
1867 error += mReader->GetLastError().c_str();
1868 QMessageBox::information(this,tr("Reading problem"),error);
1872 vvImage::Pointer roi = mReader->GetOutput();
1874 // Create roi in new tool
1875 vvToolStructureSetManager::AddImage(mCurrentSlicerManager, roi);
1878 //------------------------------------------------------------------------------
1880 //------------------------------------------------------------------------------
1881 void vvMainWindow::SelectFusionImage()
1883 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1885 //check if one fusion image is added
1886 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1887 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") {
1888 QString error = "Cannot add more than one fusion image\n";
1889 error += "Please remove first ";
1890 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1891 QMessageBox::information(this,tr("Problem adding fusion image !"),error);
1895 QString Extensions = EXTENSIONS;
1896 Extensions += ";;All Files (*)";
1897 QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
1898 if (!file.isEmpty())
1899 AddFusionImage(index,file);
1901 //------------------------------------------------------------------------------
1903 //------------------------------------------------------------------------------
1904 void vvMainWindow::AddFusionImage(int index, QString file)
1906 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1907 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1908 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1909 reader->SetFileName(file.toStdString().c_str());
1910 reader->ReadImageInformation();
1911 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1913 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1914 vvProgressDialog progress("Opening fusion");
1915 qApp->processEvents();
1917 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1918 if (mSlicerManagers[index]->SetFusion(file.toStdString(),
1919 reader->GetNumberOfDimensions(), component)) {
1920 //create an item in the tree with good settings
1921 QTreeWidgetItem *item = new QTreeWidgetItem();
1922 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1923 item->setData(1,Qt::UserRole,tr("fusion"));
1924 QFileInfo fileinfo(filename.c_str()); //Do not show the path
1925 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
1926 item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
1927 qApp->processEvents();
1929 for (int j = 1; j <= 4; j++) {
1930 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1931 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0,
1932 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1935 //Create the buttons for reload and close
1936 qApp->processEvents();
1937 QTreePushButton* cButton = new QTreePushButton;
1938 cButton->setItem(item);
1939 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1940 cButton->setToolTip(tr("close image"));
1941 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1942 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1943 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1945 QTreePushButton* rButton = new QTreePushButton;
1946 rButton->setItem(item);
1947 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1948 rButton->setToolTip(tr("reload image"));
1949 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1950 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1951 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1953 DataTree->topLevelItem(index)->setExpanded(1);
1954 DataTree->topLevelItem(index)->addChild(item);
1955 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1956 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1958 //set the id of the image
1959 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1960 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1962 qApp->processEvents();
1964 QApplication::restoreOverrideCursor();
1966 QApplication::restoreOverrideCursor();
1967 QString error = "Cannot import the new image.\n";
1968 error += mSlicerManagers[index]->GetLastError().c_str();
1969 QMessageBox::information(this,tr("Problem reading image !"),error);
1972 QString error = "Cannot import the new image.\n";
1973 QMessageBox::information(this,tr("Problem reading image !"),error);
1976 //------------------------------------------------------------------------------
1979 //------------------------------------------------------------------------------
1980 void vvMainWindow::OpenField()
1982 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1983 //check if a vector field has already been added
1984 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1985 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector") {
1986 QString error = "Cannot add more than one vector field\n";
1987 error += "Please remove first ";
1988 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1989 QMessageBox::information(this,tr("Problem adding vector field!"),error);
1993 QString Extensions = "Images ( *.mhd)";
1994 Extensions += ";;Images ( *.vf)";
1995 QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
1996 if (!file.isEmpty())
1997 AddField(file,index);
1999 //------------------------------------------------------------------------------
2002 //------------------------------------------------------------------------------
2003 void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
2005 //create an item in the tree with good settings
2006 QTreeWidgetItem *item = new QTreeWidgetItem();
2007 item->setData(0,Qt::UserRole,filename.toStdString().c_str());
2008 item->setData(1,Qt::UserRole,tr("vector"));
2009 QFileInfo fileinfo(filename); //Do not show the path
2010 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
2011 item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
2012 qApp->processEvents();
2014 for (int j = 1; j <= 4; j++) {
2015 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2016 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("vector",0,
2017 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
2020 //Create the buttons for reload and close
2021 qApp->processEvents();
2022 QTreePushButton* cButton = new QTreePushButton;
2023 cButton->setItem(item);
2024 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2025 cButton->setToolTip(tr("close vector field"));
2026 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2027 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2028 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2030 QTreePushButton* rButton = new QTreePushButton;
2031 rButton->setItem(item);
2032 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2033 rButton->setToolTip(tr("reload vector field"));
2034 rButton->setEnabled(from_disk);
2035 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2036 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2037 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2039 DataTree->topLevelItem(index)->setExpanded(1);
2040 DataTree->topLevelItem(index)->addChild(item);
2041 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2042 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2044 //set the id of the image
2045 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2046 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2048 qApp->processEvents();
2050 QApplication::restoreOverrideCursor();
2052 //------------------------------------------------------------------------------
2055 //------------------------------------------------------------------------------
2056 void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
2058 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2059 vvSlicerManager* imageManager = mSlicerManagers[index];
2060 if (imageManager->SetVF(vf,file.toStdString())) {
2061 AddFieldEntry(file,index,false);
2063 QString error = "Cannot import the vector field for this image.\n";
2064 error += imageManager->GetLastError().c_str();
2065 QMessageBox::information(this,tr("Problem reading VF !"),error);
2067 QApplication::restoreOverrideCursor();
2069 //------------------------------------------------------------------------------
2072 //------------------------------------------------------------------------------
2073 void vvMainWindow::AddField(QString file,int index)
2075 if (QFile::exists(file)) {
2076 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2078 //init the progress events
2079 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2080 vvProgressDialog progress("Opening " + file.toStdString());
2081 qApp->processEvents();
2083 //read the vector and put it in the current mSlicerManager
2084 vvSlicerManager* imageManager = mSlicerManagers[index];
2085 qApp->processEvents();
2087 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2088 if (imageManager->SetVF(file.toStdString())) {
2089 imageManager->Render();
2090 AddFieldEntry(file,index,true);
2092 QApplication::restoreOverrideCursor();
2093 QString error = "Cannot import the vector field for this image.\n";
2094 error += imageManager->GetLastError().c_str();
2095 QMessageBox::information(this,tr("Problem reading VF !"),error);
2098 QMessageBox::information(this,tr("Problem reading VF !"),"File doesn't exist!");
2101 //------------------------------------------------------------------------------
2104 //------------------------------------------------------------------------------
2105 void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width, double r, double g, double b)
2107 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2108 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
2109 for (int i = 0; i < 4; i++) {
2110 mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
2111 mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
2112 mSlicerManagers[index]->GetSlicer(i)->SetVFWidth(width);
2113 mSlicerManagers[index]->GetSlicer(i)->SetVFColor(r,g,b);
2115 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
2117 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(0);
2121 //------------------------------------------------------------------------------
2124 //------------------------------------------------------------------------------
2125 void vvMainWindow::SetOverlayProperty(int color)
2127 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2128 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
2129 mSlicerManagers[index]->SetOverlayColor(color);
2130 mSlicerManagers[index]->SetColorMap(0);
2131 mSlicerManagers[index]->Render();
2134 //------------------------------------------------------------------------------
2136 //------------------------------------------------------------------------------
2137 void vvMainWindow::SetFusionProperty(int opacity, int colormap,double window, double level)
2139 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2140 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
2141 mSlicerManagers[index]->SetFusionOpacity(opacity);
2142 mSlicerManagers[index]->SetFusionColorMap(colormap);
2143 mSlicerManagers[index]->SetFusionWindow(window);
2144 mSlicerManagers[index]->SetFusionLevel(level);
2145 mSlicerManagers[index]->SetColorMap(0);
2146 mSlicerManagers[index]->Render();
2149 //------------------------------------------------------------------------------
2151 //------------------------------------------------------------------------------
2152 void vvMainWindow::SaveAs()
2154 if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
2155 QMessageBox::warning(this,tr("Unsupported type"),tr("Sorry, saving a vector field is unsupported for the moment"));
2159 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2160 int dimension = mSlicerManagers[index]->GetDimension();
2161 QStringList OutputListeFormat;
2162 OutputListeFormat.clear();
2163 if (dimension == 1) {
2164 OutputListeFormat.push_back(".mhd");
2166 if (dimension == 2) {
2167 OutputListeFormat.push_back(".bmp");
2168 OutputListeFormat.push_back(".png");
2169 OutputListeFormat.push_back(".jpeg");
2170 OutputListeFormat.push_back(".tif");
2171 OutputListeFormat.push_back(".mhd");
2172 OutputListeFormat.push_back(".hdr");
2173 OutputListeFormat.push_back(".vox");
2174 } else if (dimension == 3) {
2175 OutputListeFormat.push_back(".mhd");
2176 OutputListeFormat.push_back(".hdr");
2177 OutputListeFormat.push_back(".vox");
2178 } else if (dimension == 4) {
2179 OutputListeFormat.push_back(".mhd");
2181 QString Extensions = "AllFiles(*.*)";
2182 for (int i = 0; i < OutputListeFormat.count(); i++) {
2183 Extensions += ";;Images ( *";
2184 Extensions += OutputListeFormat[i];
2187 QString fileName = QFileDialog::getSaveFileName(this,
2189 mSlicerManagers[index]->GetFileName().c_str(),
2191 if (!fileName.isEmpty()) {
2192 std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
2193 if (OutputListeFormat.contains(
2194 fileformat.c_str())) {
2195 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2196 std::string action = "Saving";
2197 vvProgressDialog progress("Saving "+fileName.toStdString());
2198 qApp->processEvents();
2199 vvImageWriter::Pointer writer = vvImageWriter::New();
2200 writer->SetOutputFileName(fileName.toStdString());
2201 writer->SetInput(mSlicerManagers[index]->GetImage());
2203 QApplication::restoreOverrideCursor();
2204 if (writer->GetLastError().size()) {
2205 QString error = "Saving did not succeed\n";
2206 error += writer->GetLastError().c_str();
2207 QMessageBox::information(this,tr("Saving Problem"),error);
2211 QString error = fileformat.c_str();
2212 if (error.isEmpty())
2213 error += "no file format specified !";
2215 error += " format unknown !!!\n";
2216 QMessageBox::information(this,tr("Saving Problem"),error);
2221 //------------------------------------------------------------------------------
2224 //------------------------------------------------------------------------------
2225 void vvMainWindow::AddLink(QString image1,QString image2)
2227 unsigned int sm1 = 0;
2228 unsigned int sm2 = 0;
2230 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2231 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2232 mSlicerManagers[i]->AddLink(image2.toStdString());
2235 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2236 mSlicerManagers[i]->AddLink(image1.toStdString());
2241 if (linkPanel->isLinkAll()) {
2242 emit UpdateLinkedNavigation(mSlicerManagers[sm1]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2243 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2246 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[sm1], mSlicerManagers[sm1]->GetSlicer(0));
2250 //------------------------------------------------------------------------------
2253 //------------------------------------------------------------------------------
2254 void vvMainWindow::RemoveLink(QString image1,QString image2)
2256 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2257 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2258 mSlicerManagers[i]->RemoveLink(image2.toStdString());
2260 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2261 mSlicerManagers[i]->RemoveLink(image1.toStdString());
2265 //------------------------------------------------------------------------------
2267 //------------------------------------------------------------------------------
2268 void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset)
2271 while(sm != mSlicerManagers[index])
2273 index = (index+offset) % mSlicerManagers.size();
2275 QTreeWidgetItem* item = GetItemFromSlicerManager(mSlicerManagers[index]);
2276 //CurrentImageChanged(mSlicerManagers[index]->GetId()); //select new image
2277 item->setData(slicer+1,Qt::CheckStateRole,2); //change checkbox
2278 DisplayChanged(item,slicer+1);
2280 //------------------------------------------------------------------------------
2282 void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
2284 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2285 if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
2286 for (int j = 0; j < 4; j++) {
2287 mSlicerManagers[i]->SetTSliceInSlicer(value,j);
2288 //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
2289 //UpdateTSlice(j,value);
2291 mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
2296 //------------------------------------------------------------------------------
2299 //------------------------------------------------------------------------------
2300 void vvMainWindow::NOHorizontalSliderMoved()
2302 // if (mCurrentTime == NOHorizontalSlider->value()) return;
2303 HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
2304 // mCurrentTime = NOHorizontalSlider->value();
2306 //------------------------------------------------------------------------------
2309 //------------------------------------------------------------------------------
2310 void vvMainWindow::NEHorizontalSliderMoved()
2312 // if (mCurrentTime == NEHorizontalSlider->value()) return;
2313 HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
2314 // mCurrentTime = NEHorizontalSlider->value();
2316 //------------------------------------------------------------------------------
2319 //------------------------------------------------------------------------------
2320 void vvMainWindow::SOHorizontalSliderMoved()
2322 // if (mCurrentTime == SOHorizontalSlider->value()) return;
2323 HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
2324 // mCurrentTime = SOHorizontalSlider->value();
2326 //------------------------------------------------------------------------------
2329 //------------------------------------------------------------------------------
2330 void vvMainWindow::SEHorizontalSliderMoved()
2332 // if (mCurrentTime == SEHorizontalSlider->value()) return;
2333 HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
2334 // mCurrentTime = SEHorizontalSlider->value();
2336 //------------------------------------------------------------------------------
2338 //------------------------------------------------------------------------------
2339 void vvMainWindow::NOVerticalSliderChanged()
2341 static int value=-1;
2342 if (value == NOVerticalSlider->value()) return;
2343 else value = NOVerticalSlider->value();
2344 // int value = NOVerticalSlider->value();
2345 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2346 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2347 if (mSlicerManagers[i]->GetSlicer(0)->GetSlice() != value) {
2348 mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
2349 mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
2351 // If nor Update/Render -> slider not work
2352 // only render = ok navigation, but for contour Update needed but slower ?
2354 mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
2355 //mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2361 //------------------------------------------------------------------------------
2364 //------------------------------------------------------------------------------
2365 void vvMainWindow::NEVerticalSliderChanged()
2367 static int value=-1;
2368 if (value == NEVerticalSlider->value()) return;
2369 else value = NEVerticalSlider->value();
2370 // int value = NEVerticalSlider->value();
2371 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2372 if (DataTree->topLevelItem(i)->data(COLUMN_UR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2373 if (mSlicerManagers[i]->GetSlicer(1)->GetSlice() != value) {
2374 mSlicerManagers[i]->GetSlicer(1)->SetSlice(value);
2375 mSlicerManagers[i]->VerticalSliderHasChanged(1, value);
2376 mSlicerManagers[i]->UpdateSlice(1);
2377 //mSlicerManagers[i]->GetSlicer(1)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2383 //------------------------------------------------------------------------------
2386 //------------------------------------------------------------------------------
2387 void vvMainWindow::SOVerticalSliderChanged()
2389 static int value=-1;
2390 if (value == SOVerticalSlider->value()) return;
2391 else value = SOVerticalSlider->value();
2392 //int value = SOVerticalSlider->value();
2393 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2394 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2395 if (mSlicerManagers[i]->GetSlicer(2)->GetSlice() != value) {
2396 mSlicerManagers[i]->GetSlicer(2)->SetSlice(value);
2397 mSlicerManagers[i]->VerticalSliderHasChanged(2, value);
2398 mSlicerManagers[i]->UpdateSlice(2);
2399 //mSlicerManagers[i]->GetSlicer(2)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2401 // else { DD("avoid SOVerticalSlider slicer update"); }
2406 //------------------------------------------------------------------------------
2409 //------------------------------------------------------------------------------
2410 void vvMainWindow::SEVerticalSliderChanged()
2412 static int value=-1;
2413 if (value == SEVerticalSlider->value()) return;
2414 else value = SEVerticalSlider->value();
2415 // int value = SEVerticalSlider->value();
2416 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2417 if (DataTree->topLevelItem(i)->data(COLUMN_DR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2418 if (mSlicerManagers[i]->GetSlicer(3)->GetSlice() != value) {
2419 mSlicerManagers[i]->GetSlicer(3)->SetSlice(value);
2420 mSlicerManagers[i]->VerticalSliderHasChanged(3, value);
2421 mSlicerManagers[i]->UpdateSlice(3);
2422 //mSlicerManagers[i]->GetSlicer(3)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2428 //------------------------------------------------------------------------------
2431 //------------------------------------------------------------------------------
2432 void vvMainWindow::UpdateSlice(int slicer, int slice)
2434 // DD("vvMainWindow::UpdateSlice");
2438 // if (slice != NOVerticalSlider->value())
2439 NOVerticalSlider->setValue(slice);
2442 NEVerticalSlider->setValue(slice);
2445 SOVerticalSlider->setValue(slice);
2448 SEVerticalSlider->setValue(slice);
2452 // DD("vvMainWindow:UpdateSlice END");
2454 //------------------------------------------------------------------------------
2457 //------------------------------------------------------------------------------
2458 void vvMainWindow::UpdateTSlice(int slicer, int slice)
2462 NOHorizontalSlider->setValue(slice);
2465 NEHorizontalSlider->setValue(slice);
2468 SOHorizontalSlider->setValue(slice);
2471 SEHorizontalSlider->setValue(slice);
2475 //------------------------------------------------------------------------------
2478 //------------------------------------------------------------------------------
2479 void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax)
2481 int position = int((min+max)/2);
2482 int tPosition = int((tmin+tmax)/2);
2484 NOVerticalSlider->setValue(position);
2485 NOVerticalSlider->setRange(min,max);
2486 NOHorizontalSlider->setRange(tmin,tmax);
2487 NOHorizontalSlider->setValue(tPosition);
2488 } else if (slicer == 1) {
2489 NEVerticalSlider->setValue(position);
2490 NEVerticalSlider->setRange(min,max);
2491 NEHorizontalSlider->setRange(tmin,tmax);
2492 NEHorizontalSlider->setValue(tPosition);
2493 } else if (slicer == 2) {
2494 SOVerticalSlider->setValue(position);
2495 SOVerticalSlider->setRange(min,max);
2496 SOHorizontalSlider->setRange(tmin,tmax);
2497 SOHorizontalSlider->setValue(tPosition);
2498 } else if (slicer == 3) {
2499 SEVerticalSlider->setValue(position);
2500 SEVerticalSlider->setRange(min,max);
2501 SEHorizontalSlider->setRange(tmin,tmax);
2502 SEHorizontalSlider->setValue(tPosition);
2505 //------------------------------------------------------------------------------
2508 //------------------------------------------------------------------------------
2509 void vvMainWindow::SaveNOScreenshot()
2511 SaveScreenshot(NOViewWidget);
2513 //------------------------------------------------------------------------------
2516 //------------------------------------------------------------------------------
2517 void vvMainWindow::SaveNEScreenshot()
2519 SaveScreenshot(NEViewWidget);
2521 //------------------------------------------------------------------------------
2524 //------------------------------------------------------------------------------
2525 void vvMainWindow::SaveSOScreenshot()
2527 SaveScreenshot(SOViewWidget);
2529 //------------------------------------------------------------------------------
2532 //------------------------------------------------------------------------------
2533 void vvMainWindow::SaveSEScreenshot()
2535 SaveScreenshot(SEViewWidget);
2537 //------------------------------------------------------------------------------
2540 //------------------------------------------------------------------------------
2541 void vvMainWindow::SaveScreenshot(QVTKWidget *widget)
2543 QString Extensions = "Images( *.png);;";
2544 Extensions += "Images( *.jpg);;";
2545 Extensions += "Images( *.bmp);;";
2546 Extensions += "Images( *.tif);;";
2547 Extensions += "Images( *.ppm)";
2548 #ifdef VTK_USE_FFMPEG_ENCODER
2549 Extensions += "Images( *.avi)";
2551 #ifdef VTK_USE_MPEG2_ENCODER
2552 Extensions += "Images( *.mpg)";
2555 int smIndex=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2556 QString fileName = QFileDialog::getSaveFileName(this,
2558 itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(),
2561 if (!fileName.isEmpty()) {
2562 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2563 w2i->SetInput(widget->GetRenderWindow());
2565 vtkImageData *image = w2i->GetOutput();
2567 const char *ext = fileName.toStdString().c_str() + strlen(fileName.toStdString().c_str()) - 4;
2568 if (!strcmp(ext, ".bmp")) {
2569 vtkBMPWriter *bmp = vtkBMPWriter::New();
2570 bmp->SetInput(image);
2571 bmp->SetFileName(fileName.toStdString().c_str());
2574 } else if (!strcmp(ext, ".tif")) {
2575 vtkTIFFWriter *tif = vtkTIFFWriter::New();
2576 tif->SetInput(image);
2577 tif->SetFileName(fileName.toStdString().c_str());
2580 } else if (!strcmp(ext, ".ppm")) {
2581 vtkPNMWriter *pnm = vtkPNMWriter::New();
2582 pnm->SetInput(image);
2583 pnm->SetFileName(fileName.toStdString().c_str());
2586 } else if (!strcmp(ext, ".png")) {
2587 vtkPNGWriter *png = vtkPNGWriter::New();
2588 png->SetInput(image);
2589 png->SetFileName(fileName.toStdString().c_str());
2592 } else if (!strcmp(ext, ".jpg")) {
2593 vtkJPEGWriter *jpg = vtkJPEGWriter::New();
2594 jpg->SetInput(image);
2595 jpg->SetFileName(fileName.toStdString().c_str());
2598 #ifdef VTK_USE_FFMPEG_ENCODER
2599 } else if (!strcmp(ext, ".avi")) {
2600 vtkFFMPEGWriter *mpg = vtkFFMPEGWriter::New();
2601 mpg->SetInput(image);
2602 mpg->SetFileName(fileName.toStdString().c_str());
2607 vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
2608 int nSlice = vvImg->GetVTKImages().size();
2609 for(int i=0; i<nSlice; i++)
2611 mSlicerManagers[smIndex]->SetNextTSlice(0);
2612 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2613 w2i->SetInput(widget->GetRenderWindow());
2615 mpg->SetInput(w2i->GetOutput());
2621 #ifdef VTK_USE_MPEG2_ENCODER
2622 } else if (!strcmp(ext, ".mpg")) {
2623 vtkMPEG2Writer *mpg = vtkMPEG2Writer::New();
2624 mpg->SetInput(image);
2625 mpg->SetFileName(fileName.toStdString().c_str());
2628 vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
2629 int nSlice = vvImg->GetVTKImages().size();
2630 for(int i=0; i<nSlice; i++)
2632 mSlicerManagers[smIndex]->SetNextTSlice(0);
2633 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2634 w2i->SetInput(widget->GetRenderWindow());
2636 mpg->SetInput(w2i->GetOutput());
2643 QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
2647 //------------------------------------------------------------------------------
2650 //------------------------------------------------------------------------------
2651 void vvMainWindow::GoToCursor()
2653 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2654 for (int column = 1; column < 5; column++) {
2655 if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1) {
2656 double* cursorPos = mSlicerManagers[index]->GetSlicer(column-1)->GetCursorPosition();
2657 mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
2658 cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
2659 mSlicerManagers[index]->UpdateViews(1,column-1);
2660 mSlicerManagers[index]->UpdateLinked(column-1);
2665 //------------------------------------------------------------------------------
2667 //------------------------------------------------------------------------------
2668 void vvMainWindow::PlayPause()
2672 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_play.png")));
2676 int image_number=DataTree->topLevelItemCount();
2678 for (int i=0; i<image_number; i++)
2679 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1) {
2685 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
2686 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2690 //------------------------------------------------------------------------------
2692 //------------------------------------------------------------------------------
2693 void vvMainWindow::PlayNext()
2695 if (playMode && !this->isHidden()) {
2696 int image_number=DataTree->topLevelItemCount();
2697 ///Only play one slicer per SM, and only if the SM is being displayed
2698 for (int i=0; i<image_number; i++)
2699 for (int j=0; j<4; j++)
2700 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1 &&
2701 DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
2702 mSlicerManagers[i]->SetNextTSlice(j);
2705 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2708 //------------------------------------------------------------------------------
2710 void vvMainWindow::ShowLastImage()
2712 if (mSlicerManagers.size() > 1) {
2713 QTreeWidgetItem * item=DataTree->topLevelItem(DataTree->topLevelItemCount()-1);
2714 CurrentImageChanged(mSlicerManagers.back()->GetId()); //select new image
2715 item->setData(1,Qt::CheckStateRole,2); //show the new image in the first panel
2716 DisplayChanged(item,1);
2720 //------------------------------------------------------------------------------
2721 void vvMainWindow::UpdateRenderWindows()
2723 if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
2724 if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
2725 if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
2726 if (SEViewWidget->GetRenderWindow()) SEViewWidget->GetRenderWindow()->Render();
2728 //------------------------------------------------------------------------------
2730 //------------------------------------------------------------------------------
2731 void vvMainWindow::SegmentationOnCurrentImage()
2733 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2735 vvSegmentationDialog segmentation;
2736 segmentation.SetImage(mSlicerManagers[index]->GetSlicer(0)->GetImage());
2737 segmentation.exec();
2739 //------------------------------------------------------------------------------
2741 void vvMainWindow::SurfaceViewerLaunch()
2743 vvSurfaceViewerDialog surfaceViewer;
2744 surfaceViewer.exec();
2746 //------------------------------------------------------------------------------
2749 //------------------------------------------------------------------------------
2750 int vvMainWindow::GetImageDuplicateFilenameNumber(std::string filename)
2753 for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
2754 vvSlicerManager * v = mSlicerManagers[l];
2755 if (v->GetBaseFileName() ==
2756 vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
2757 number = std::max(number, v->GetBaseFileNameNumber()+1);
2762 //------------------------------------------------------------------------------
2765 //------------------------------------------------------------------------------
2766 vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
2768 // Change filename if another image exist with the same name
2769 int number = GetImageDuplicateFilenameNumber(filename);
2771 // Create new SliceManager
2772 vvSlicerManager* slicer_manager = new vvSlicerManager(4);
2773 slicer_manager->SetImage(image);//, IMAGE, number);
2774 // filename = filename+"_"+clitk::toString(number);
2775 slicer_manager->SetFilename(filename, number);
2776 mSlicerManagers.push_back(slicer_manager);
2778 //create an item in the tree with good settings
2779 QTreeWidgetItem *item = new QTreeWidgetItem();
2780 item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
2781 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,slicer_manager->GetFileName().c_str());//filename.c_str());
2782 qApp->processEvents();
2784 for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1);
2786 //Create the buttons for reload and close
2787 qApp->processEvents();
2788 QTreePushButton* cButton = new QTreePushButton;
2789 cButton->setItem(item);
2790 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2791 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2792 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2793 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2795 QTreePushButton* rButton = new QTreePushButton;
2796 rButton->setItem(item);
2797 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2798 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2799 rButton->setEnabled(0);
2800 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2801 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2803 DataTree->addTopLevelItem(item);
2804 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2805 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2807 //set the id of the image
2808 QString id = slicer_manager->GetFileName().c_str() + QString::number(mSlicerManagers.size()-1);
2809 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2810 mSlicerManagers.back()->SetId(id.toStdString());
2812 linkPanel->addImage(slicer_manager->GetFileName().c_str()// filename
2813 , id.toStdString());
2815 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
2816 this, SLOT(CurrentImageChanged(std::string)));
2817 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
2818 this, SLOT(CurrentPickedImageChanged(std::string)));
2819 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
2820 this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
2821 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
2822 this, SLOT(VectorChanged(int,double,double,double, double)));
2823 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
2824 this, SLOT(OverlayChanged(int,double,double)));
2825 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
2826 this, SLOT(FusionChanged(int,double)));
2827 connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
2828 this,SLOT(WindowsChanged(int, int, int)));
2829 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
2830 this,SLOT(WindowLevelChanged(double, double, int, int)));
2831 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
2832 this,SLOT(UpdateSlice(int,int)));
2833 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
2834 this,SLOT(UpdateTSlice(int, int)));
2835 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
2836 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
2837 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
2838 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
2839 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
2840 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
2841 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
2842 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
2843 connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
2845 qApp->processEvents();
2849 qApp->processEvents();
2853 return slicer_manager;
2855 //------------------------------------------------------------------------------
2858 //------------------------------------------------------------------------------
2859 void vvMainWindow::UpdateCurrentSlicer()
2862 if (DataTree->selectedItems().size() > 0) {
2863 index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2865 mSlicerManagerCurrentIndex = index;
2867 //------------------------------------------------------------------------------