1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://www.centreleonberard.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ===========================================================================**/
20 #include <QMessageBox>
21 #include <QInputDialog>
23 #include "QTreePushButton.h"
28 #include "vvMainWindow.h"
29 #include "vvHelpDialog.h"
30 #include "vvRegisterForm.h"
31 #include "vvDocumentation.h"
32 #include "vvProgressDialog.h"
33 #include "vvQDicomSeriesSelector.h"
34 #include "vvSlicerManager.h"
35 #include "clitkImageCommon.h"
37 #include "vvInteractorStyleNavigator.h"
38 #include "vvImageWriter.h"
39 #include "vvSegmentationDialog.h"
40 #include "vvSurfaceViewerDialog.h"
41 #include "vvDeformationDialog.h"
42 #include "vvImageWarp.h"
44 #include "vvMidPosition.h"
46 #include "vvStructSelector.h"
47 #include "vvMeshReader.h"
48 #include "vvSaveState.h"
49 #include "vvReadState.h"
50 #include "clitkConfiguration.h"
54 #include <itkImageFileReader.h>
55 #include <itkByteSwapper.h>
56 #include <itkCommand.h>
57 #include <itkNumericSeriesFileNames.h>
60 #include <vtkImageData.h>
61 #include <vtkImageActor.h>
62 #include <vtkCornerAnnotation.h>
63 #include <vtkRenderWindow.h>
64 #include <vtkRenderWindowInteractor.h>
65 #include <vtkRenderer.h>
66 #include <vtkRendererCollection.h>
67 #include <vtkWindowToImageFilter.h>
68 #include <vtkBMPWriter.h>
69 #include <vtkTIFFWriter.h>
70 #include <vtkPNMWriter.h>
71 #include <vtkPNGWriter.h>
72 #include <vtkJPEGWriter.h>
73 #include <vtkGenericMovieWriter.h>
74 #ifdef CLITK_EXPERIMENTAL
75 # include <vvAnimatedGIFWriter.h>
77 #ifdef VTK_USE_VIDEO_FOR_WINDOWS
78 # include <vtkAVIWriter.h>
80 #ifdef VTK_USE_FFMPEG_ENCODER
81 # include <vtkFFMPEGWriter.h>
83 #ifdef VTK_USE_MPEG2_ENCODER
84 # include <vtkMPEG2Writer.h>
86 #include <vtkMatrix4x4.h>
87 #include <vtkTransform.h>
95 #define COLUMN_UL_VIEW 1
96 #define COLUMN_UR_VIEW 2
97 #define COLUMN_DL_VIEW 3
98 #define COLUMN_DR_VIEW 4
99 #define COLUMN_CLOSE_IMAGE 5
100 #define COLUMN_RELOAD_IMAGE 6
101 #define COLUMN_IMAGE_NAME 7
103 #ifdef CLITK_PRIVATE_FEATURES
104 #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr *.refscan *.nii.gz *.usf)"
106 #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr *.refscan *.nii.gz)"
111 0,Qt::UserRole full filename
112 1,Qt::CheckStateRole checkbutton UL View
113 1,Qt::UserRole overlay, fusion or vector
114 2,Qt::CheckStateRole checkbutton UR View
115 3,Qt::CheckStateRole checkbutton DL View
116 4,Qt::CheckStateRole checkbutton DR View
118 5,Qt::UserRole mSlicerManager id*/
120 //------------------------------------------------------------------------------
121 vvMainWindow::vvMainWindow():vvMainWindowBase()
123 setupUi(this); // this sets up the GUI
126 mMenuTools = menuTools;
127 // mMenuSegmentation = menuSegmentation;
128 mContextMenu = &contextMenu;
129 mMenuExperimentalTools = menuExperimental;
132 mCurrentSelectedImageId = "";
133 mCurrentPickedImageId = "";
134 mCurrentPickedImageIndex = 0;
136 //Init the contextMenu
137 this->setContextMenuPolicy(Qt::CustomContextMenu);
138 contextActions.resize(0);
139 QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
140 tr("O&pen new Image"));
141 actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
142 connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
143 contextActions.push_back(actionOpen_new_image);
144 contextMenu.addSeparator();
146 QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
147 tr("Close Current Image"));
148 connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
149 contextActions.push_back(actionClose_Image);
151 QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
152 tr("Reload Current Image"));
153 connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
154 contextActions.push_back(actionReload_image);
156 QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
157 tr("Save Current Image"));
158 connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
159 contextActions.push_back(actionSave_image);
161 QAction* actionSave_state = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
162 tr("Save Current State"));
163 connect(actionSave_state,SIGNAL(triggered()),this,SLOT(SaveCurrentState()));
164 contextActions.push_back(actionSave_state);
166 QAction* actionRead_state = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
167 tr("Read Saved State"));
168 connect(actionRead_state,SIGNAL(triggered()),this,SLOT(ReadSavedState()));
169 contextActions.push_back(actionRead_state);
171 contextMenu.addSeparator();
173 contextMenu.addAction(actionAdd_VF_to_current_Image);
174 contextActions.push_back(actionAdd_VF_to_current_Image);
176 //QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
177 // tr("Add overlay image to current image"));
178 contextMenu.addAction(actionAdd_overlay_image_to_current_image);
179 contextActions.push_back(actionAdd_overlay_image_to_current_image);
181 contextMenu.addAction(actionAdd_fusion_image);
182 contextActions.push_back(actionAdd_fusion_image);
184 contextMenu.addAction(actionAdd_USSequence_toCT);
185 contextActions.push_back(actionAdd_USSequence_toCT);
188 contextMenu.addSeparator();
189 QAction* actionResetMatrix = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/identity.png")),
190 tr("Reset transformation to identity"));
191 connect(actionResetMatrix, SIGNAL(triggered()), this,SLOT(ResetTransformationToIdentity()));
195 QMenu * m = new QMenu(menubar);
197 // m->setObjectName(QString::fromUtf8("TOTOTO"));
198 contextMenu.addMenu(m);
199 QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
201 QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
205 connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
209 mSlicerManagers.resize(0);
219 header.append("Name");
221 DataTree->setHeaderLabels(header);
222 DataTree->resizeColumnToContents(COLUMN_TREE);
223 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
224 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
225 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
226 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
227 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
228 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
229 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
232 documentation = new vvDocumentation();
233 help_dialog = new vvHelpDialog();
234 dicomSeriesSelector = new vvDicomSeriesSelector();
236 inverseButton->setEnabled(0);
237 actionAdd_overlay_image_to_current_image->setEnabled(0);
238 actionSave_As->setEnabled(0);
239 actionAdd_VF_to_current_Image->setEnabled(0);
240 actionAdd_fusion_image->setEnabled(0);
241 actionAdd_USSequence_toCT->setEnabled(0);
244 verticalSliders.push_back(NOVerticalSlider);
245 verticalSliders.push_back(NEVerticalSlider);
246 verticalSliders.push_back(SOVerticalSlider);
247 verticalSliders.push_back(SEVerticalSlider);
249 for (int i =0; i < 4; i++)
250 verticalSliders[i]->hide();
252 horizontalSliders.push_back(NOHorizontalSlider);
253 horizontalSliders.push_back(NEHorizontalSlider);
254 horizontalSliders.push_back(SOHorizontalSlider);
255 horizontalSliders.push_back(SEHorizontalSlider);
257 for (int i =0; i < 4; i++)
258 horizontalSliders[i]->hide();
261 connect(NOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOVerticalSliderChanged()));
262 connect(NEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEVerticalSliderChanged()));
263 connect(SOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOVerticalSliderChanged()));
264 connect(SEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEVerticalSliderChanged()));
266 connect(NOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOHorizontalSliderMoved()));
267 connect(NEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEHorizontalSliderMoved()));
268 connect(SOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOHorizontalSliderMoved()));
269 connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved()));
272 connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition()));
273 connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration()));
274 connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
275 connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
276 connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
277 connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
278 connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
279 connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
280 connect(actionSlice_Image_As_Multiple_Images,SIGNAL(triggered()),this,SLOT(SliceImages()));
281 connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
282 connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
283 connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
284 connect(actionSave_current_state,SIGNAL(triggered()),this,SLOT(SaveCurrentState()));
285 connect(actionRead_saved_state,SIGNAL(triggered()),this,SLOT(ReadSavedState()));
286 connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
287 connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
288 connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
289 connect(actionAdd_overlay_image_to_current_image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
290 connect(actionAdd_USSequence_toCT,SIGNAL(triggered()), this,SLOT(SelectFusionSequence()));
291 connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
292 connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
293 connect(actionRegister_vv,SIGNAL(triggered()),this,SLOT(PopupRegisterForm()));
296 ///////////////////////////////////////////////
297 connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
298 connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
299 ///////////////////////////////////////////////
301 actionNorth_East_Window->setEnabled(0);
302 actionNorth_West_Window->setEnabled(0);
303 actionSouth_East_Window->setEnabled(0);
304 actionSouth_West_Window->setEnabled(0);
306 connect(actionNorth_East_Window,SIGNAL(triggered()),this,SLOT(SaveNEScreenshot()));
307 connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
308 connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
309 connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
310 connect(actionSave_all_slices,SIGNAL(triggered()),this,SLOT(SaveScreenshotAllSlices()));
312 connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
313 connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
314 SLOT(DisplayChanged(QTreeWidgetItem*, int)));
316 connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
317 connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
318 connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
319 connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
320 connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
321 connect(slicingPresetComboBox, SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateSlicingPreset()));
322 connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
323 connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages()));
325 connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
327 connect(linkPanel,SIGNAL(addLink(QString,QString,bool)),this,SLOT(AddLink(QString,QString,bool)));
328 connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
329 connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double)));
330 connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int,int,double,double)),
331 this,SLOT(SetOverlayProperty(int,int,double,double)));
332 connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,int,double,double, bool)),
333 this,SLOT(SetFusionProperty(int,int,int,double,double, bool)));
334 connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
336 connect(overlayPanel,SIGNAL(FusionSequencePropertyUpdated(int, bool, unsigned int)),
337 this,SLOT(SetFusionSequenceProperty(int, bool,unsigned int)));
342 playButton->setEnabled(0);
343 frameRateLabel->setEnabled(0);
344 frameRateSpinBox->setEnabled(0);
345 connect(playButton, SIGNAL(clicked()),this,SLOT(PlayPause()));
346 connect(frameRateSpinBox, SIGNAL(valueChanged(int)),this,SLOT(ChangeFrameRate(int)));
348 goToCursorPushButton->setEnabled(0);
349 connect(goToCursorPushButton, SIGNAL(clicked()),this,SLOT(GoToCursor()));
351 NOViewWidget->hide();
352 NEViewWidget->hide();
353 SOViewWidget->hide();
354 SEViewWidget->hide();
356 //Recently opened files
357 std::list<std::string> recent_files = GetRecentlyOpenedImages();
358 recentlyOpenedFilesMenu=NULL;
359 if ( !recent_files.empty() ) {
360 createRecentlyOpenedFilesMenu();
361 updateRecentlyOpenedFilesMenu(recent_files);
364 // Adding all new tools (insertion in the menu)
365 vvToolManager::GetInstance()->InsertToolsInMenu(this);
366 vvToolManager::GetInstance()->EnableToolsInMenu(this, false);
368 if (!CLITK_EXPERIMENTAL)
369 menuExperimental->menuAction()->setVisible(false);
372 QTimer * timerMemory = new QTimer(this);
373 //timerMemory->setInterval(5);
374 connect(timerMemory, SIGNAL(timeout()), this, SLOT(UpdateMemoryUsage()));
375 timerMemory->start(2000);
378 //------------------------------------------------------------------------------
379 void vvMainWindow::show()
381 vvMainWindowBase::show();
382 PopupRegisterForm(true);
384 //------------------------------------------------------------------------------
385 void vvMainWindow::UpdateMemoryUsage()
387 // clitk::PrintMemory(true);
388 if (clitk::GetMemoryUsageInMb() == 0) infoPanel->setMemoryInMb("NA");
389 else infoPanel->setMemoryInMb(QString::number(clitk::GetMemoryUsageInMb())+" MiB");
391 //------------------------------------------------------------------------------
394 //------------------------------------------------------------------------------
395 void vvMainWindow::createRecentlyOpenedFilesMenu()
397 recentlyOpenedFilesMenu = new QMenu("Recently opened files...");
398 recentlyOpenedFilesMenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
399 menuFile->insertMenu(actionOpen_Image_With_Time,recentlyOpenedFilesMenu);
400 menuFile->insertSeparator(actionOpen_Image_With_Time);
402 //------------------------------------------------------------------------------
405 //------------------------------------------------------------------------------
407 void vvMainWindow::updateRecentlyOpenedFilesMenu(const std::list<std::string> &recent_files)
409 if(recentlyOpenedFilesMenu==NULL) {
410 createRecentlyOpenedFilesMenu();
412 recentlyOpenedFilesMenu->clear();
414 for (std::list<std::string>::const_iterator i = recent_files.begin(); i!=recent_files.end(); i++) {
415 QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")), i->c_str(),this);
416 recentlyOpenedFilesMenu->addAction(current);
417 connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage()));
420 //------------------------------------------------------------------------------
423 //------------------------------------------------------------------------------
424 void vvMainWindow::ComputeMidPosition()
427 int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
428 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
429 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
432 midp.slicer_manager = mSlicerManagers[index];
433 midp.reference_image_index = ref;
434 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
437 QMessageBox::warning(this, "Error computing midposition image",midp.error_message.c_str());
439 QFileInfo info(midp.slicer_manager->GetFileName().c_str());
440 AddImage(midp.output,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_midposition.mhd");
442 QApplication::restoreOverrideCursor();
445 //------------------------------------------------------------------------------
448 //------------------------------------------------------------------------------
449 void vvMainWindow::AddContour(int image_index, vvMesh::Pointer contour, bool propagation)
451 QTreeWidgetItem *item = new QTreeWidgetItem();
452 item->setData(0,Qt::UserRole,"filename.vtk");
453 item->setData(1,Qt::UserRole,tr("contour"));
455 brush.setColor(QColor(contour->r*255,contour->g*255,contour->b*255));
456 brush.setStyle(Qt::SolidPattern);
457 item->setData(COLUMN_IMAGE_NAME,Qt::BackgroundRole,brush);
458 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
460 for (int j = 1; j <= 4; j++)
461 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(image_index)->data(j,Qt::CheckStateRole));
463 QTreePushButton* cButton = new QTreePushButton;
464 cButton->setItem(item);
465 cButton->setColumn(COLUMN_CLOSE_IMAGE);
466 cButton->setToolTip(tr("close image"));
467 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
468 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
469 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
471 QTreePushButton* rButton = new QTreePushButton;
472 rButton->setItem(item);
473 rButton->setColumn(COLUMN_RELOAD_IMAGE);
474 rButton->setToolTip(tr("reload image"));
475 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
476 rButton->setEnabled(false);
478 //connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
479 //this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
481 DataTree->topLevelItem(image_index)->setExpanded(1);
482 DataTree->topLevelItem(image_index)->addChild(item);
483 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
484 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
485 QString id = DataTree->topLevelItem(image_index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
486 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
489 mSlicerManagers[image_index]->AddContour(contour,propagation);
490 mSlicerManagers[image_index]->Render();
492 //------------------------------------------------------------------------------
495 //------------------------------------------------------------------------------
496 void vvMainWindow::OpenVTKContour()
498 if (mSlicerManagers.size() > 0) {
499 QString Extensions = "Images ( *.vtk *.obj)";
500 Extensions += ";;All Files (*)";
501 QString file = QFileDialog::getOpenFileName(this,tr("Open vtkPolyData"),mInputPathName,Extensions);
504 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
505 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
507 reader.SetImage(mSlicerManagers[index]->GetImage());
508 reader.SetModeToVTK();
509 reader.SetFilename(file.toStdString());
511 AddContour(index,reader.GetOutput()[0],false);
512 QApplication::restoreOverrideCursor();
515 //------------------------------------------------------------------------------
518 //------------------------------------------------------------------------------
519 void vvMainWindow::AddDCStructContour(int index, QString file)
522 reader.SetFilename(file.toStdString());
523 vvStructSelector selector;
524 selector.SetStructures(reader.GetROINames());
525 if (!mSlicerManagers[index]->GetVF().IsNull())
526 selector.EnablePropagationCheckBox();
527 if (selector.exec()) {
528 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
529 reader.SetSelectedItems(selector.getSelectedItems());
530 reader.SetImage(mSlicerManagers[index]->GetImage());
531 if (selector.PropagationEnabled())
532 reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
534 std::vector<vvMesh::Pointer> contours=reader.GetOutput();
535 for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
536 i!=contours.end(); i++)
537 AddContour(index,*i,selector.PropagationEnabled());
538 QApplication::restoreOverrideCursor();
542 //------------------------------------------------------------------------------
543 void vvMainWindow::OpenDCStructContour()
545 if (mSlicerManagers.size() > 0) {
546 QString Extensions = "Dicom Files ( *.dcm RS*)";
547 Extensions += ";;All Files (*)";
548 QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
551 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
552 AddDCStructContour(index, file);
555 //------------------------------------------------------------------------------
558 //------------------------------------------------------------------------------
559 void vvMainWindow::ComputeDeformableRegistration()
561 if (mSlicerManagers.size() > 0) {
562 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
563 vvDeformationDialog dialog(index,mSlicerManagers);
565 std::string base_name=itksys::SystemTools::GetFilenameWithoutExtension(mSlicerManagers[dialog.GetInputFileIndex()]->GetFileName());
566 AddField(dialog.GetOutput(),dialog.getFieldFile(),dialog.GetInputFileIndex());
567 WarpImage(dialog.GetSelectedSlicer(),dialog.GetReferenceFrameIndex());
569 std::cout << "Error or user cancellation while computing deformation field..." << std::endl;
570 } else QMessageBox::information(this, "Need to open image","You must open an image first.");
572 //------------------------------------------------------------------------------
575 //------------------------------------------------------------------------------
576 void vvMainWindow::WarpImage()
578 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
579 if (!mSlicerManagers[index]->GetVF().IsNull()) {
581 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
582 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
584 WarpImage(mSlicerManagers[index],ref);
587 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field"));
589 //------------------------------------------------------------------------------
592 //------------------------------------------------------------------------------
593 void vvMainWindow::WarpImage(vvSlicerManager* selected_slicer,int reference_phase)
595 if (!selected_slicer->GetVF().IsNull()) {
596 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
597 QFileInfo info(selected_slicer->GetFileName().c_str());
598 vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
599 reference_phase,this);
600 if (warp.ComputeWarpedImage()) {
601 AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
602 AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
603 AddImage(warp.GetJacobianImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_jacobian.mhd");
604 QApplication::restoreOverrideCursor();
606 QApplication::restoreOverrideCursor();
607 QMessageBox::warning(this,tr("Different spacings"),tr("The vector field and image spacings must be the same in order to warp."));
610 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field."));
612 //------------------------------------------------------------------------------
615 //------------------------------------------------------------------------------
616 vvMainWindow::~vvMainWindow()
618 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
619 if (mSlicerManagers[i] != NULL)
620 delete mSlicerManagers[i];
623 //------------------------------------------------------------------------------
625 //------------------------------------------------------------------------------
626 QTabWidget * vvMainWindow::GetTab()
630 //------------------------------------------------------------------------------
633 //------------------------------------------------------------------------------
634 void vvMainWindow::MergeImages()
636 QString Extensions = EXTENSIONS;
637 Extensions += ";;All Files (*)";
638 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images"),mInputPathName,Extensions);
641 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
642 std::vector<std::string> vector;
644 unsigned int currentDim = 0;
645 std::vector<double> currentSpacing;
646 std::vector<int> currentSize;
647 std::vector<double> currentOrigin;
649 for (int i = 0; i < files.size(); i++) {
650 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
651 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
652 reader->SetFileName(files[i].toStdString().c_str());
653 reader->ReadImageInformation();
655 //NOViewWidget->hide();
656 //NEViewWidget->hide();
657 //SOViewWidget->hide();
658 //SEViewWidget->hide();
660 currentDim = reader->GetNumberOfDimensions();
662 for (unsigned int j = 0; j < currentDim; j++) {
665 currentSpacing.resize(currentDim);
666 currentSize.resize(currentDim);
667 currentOrigin.resize(currentDim);
669 currentOrigin[j] = reader->GetOrigin(j);
670 currentSpacing[j] = reader->GetSpacing(j);
671 currentSize[j] = reader->GetDimensions(j);
672 } else if (currentDim != reader->GetNumberOfDimensions()
673 || currentSpacing[j] != reader->GetSpacing(j)
674 || currentSize[j] != (int)reader->GetDimensions(j)
675 || currentOrigin[j] != reader->GetOrigin(j)) {
676 QString error = "Cannot read file (too different from others ";
677 error += files[i].toStdString().c_str();
678 QMessageBox::information(this,tr("Reading problem"),error);
684 vector.push_back(files[i].toStdString());
687 if (vector.size() > 0)
688 LoadImages(vector, vvImageReader::MERGED);
690 //------------------------------------------------------------------------------
692 //------------------------------------------------------------------------------
693 void vvMainWindow::SliceImages()
695 QString Extensions = EXTENSIONS;
696 Extensions += ";;All Files (*)";
698 QStringList files = QFileDialog::getOpenFileNames(this,tr("Slice Images"),mInputPathName,Extensions);
701 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
702 std::vector<std::string> vector;
703 for (int i = 0; i < files.size(); i++)
704 vector.push_back(files[i].toStdString());
705 LoadImages(vector, vvImageReader::SLICED);
707 //------------------------------------------------------------------------------
709 //------------------------------------------------------------------------------
710 void vvMainWindow::MergeImagesWithTime()
712 QString Extensions = EXTENSIONS;
713 Extensions += ";;All Files (*)";
714 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images With Time"),mInputPathName,Extensions);
717 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
718 std::vector<std::string> vector;
720 for (int i = 0; i < files.size(); i++)
721 vector.push_back(files[i].toStdString());
722 sort(vector.begin(),vector.end());
723 if (vector.size() > 1)
724 LoadImages(vector, vvImageReader::MERGEDWITHTIME);
726 QMessageBox::warning(this,tr("Reading problem"),"You need to select at least two images to merge images with time.\nIf you only want to open one image, please use the \"Open Image\" function.");
728 //------------------------------------------------------------------------------
731 //------------------------------------------------------------------------------
732 void vvMainWindow::OpenDicom()
734 std::vector<std::string> files;
736 std::cout << "dicomSeriesSelector " << std::endl;
737 if (dicomSeriesSelector->exec() == QDialog::Accepted) {
738 files = *(dicomSeriesSelector->GetFilenames());
739 LoadImages(files, vvImageReader::DICOM);
742 //------------------------------------------------------------------------------
744 //------------------------------------------------------------------------------
745 void vvMainWindow::OpenImages()
747 QString Extensions = EXTENSIONS;
748 Extensions += ";;All Files (*)";
750 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images"),mInputPathName,Extensions);
753 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
754 std::vector<std::string> vector;
755 for (int i = 0; i < files.size(); i++)
756 vector.push_back(files[i].toStdString());
757 LoadImages(vector, vvImageReader::IMAGE);
759 //------------------------------------------------------------------------------
760 void vvMainWindow::OpenRecentImage()
762 QAction * caller = qobject_cast<QAction*>(sender());
763 std::vector<std::string> images;
764 images.push_back(caller->text().toStdString());
765 mInputPathName = itksys::SystemTools::GetFilenamePath(images[0]).c_str();
766 LoadImages(images, vvImageReader::IMAGE);
768 //------------------------------------------------------------------------------
771 //------------------------------------------------------------------------------
772 void vvMainWindow::OpenImageWithTime()
774 QString Extensions = EXTENSIONS;
775 Extensions += ";;All Files (*)";
777 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images With Time"),mInputPathName,Extensions);
780 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
781 std::vector<std::string> vector;
782 for (int i = 0; i < files.size(); i++) {
783 vector.push_back(files[i].toStdString());
785 LoadImages(vector, vvImageReader::IMAGEWITHTIME);
787 //------------------------------------------------------------------------------
790 //------------------------------------------------------------------------------
791 void vvMainWindow::LoadImages(std::vector<std::string> files, vvImageReader::LoadedImageType filetype)
793 //Separate the way to open images and dicoms
795 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME)
796 fileSize = files.size();
800 // For SLICED, we need the number of slices (ndim and #slices)
801 std::vector<unsigned int> nSlices;
802 nSlices.resize(files.size());
803 std::fill(nSlices.begin(), nSlices.end(), 1);
804 if (filetype == vvImageReader::SLICED) {
805 for (int i = 0; i < fileSize; i++) {
806 itk::ImageIOBase::Pointer header = clitk::readImageHeader(files[i]);
807 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
810 QString error = "Cannot open file \n";
811 error += files[i].c_str();
812 QMessageBox::information(this,tr("Reading problem"),error);
815 if (header->GetNumberOfDimensions() < 3) {
817 QString error = "Dimension problem. Cannot slice \n";
818 error += files[i].c_str();
819 QMessageBox::information(this,tr("Reading problem"),error);
822 nSlices[i] = header->GetDimensions( header->GetNumberOfDimensions()-1 );
826 //Only add to the list of recently opened files when a single file is opened,
827 //to avoid polluting the list of recently opened files
828 if (files.size() == 1) {
829 QFileInfo finfo=tr(files[0].c_str());
830 AddToRecentlyOpenedImages(finfo.absoluteFilePath().toStdString());
831 updateRecentlyOpenedFilesMenu(GetRecentlyOpenedImages());
833 //init the progress events
834 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
835 vvProgressDialog progress("Opening " + files[0],fileSize>1);
836 qApp->processEvents();
838 int numberofsuccesulreads=0;
839 //open images as 1 or multiples
840 for (int i = 0; i < fileSize; i++) {
842 progress.SetText("Opening " + files[i]);
843 progress.SetProgress(i,fileSize);
844 qApp->processEvents();
846 for (unsigned int j = 0; j < nSlices[i]; j++) {
847 //read the image and put it in mSlicerManagers
848 vvSlicerManager* imageManager = new vvSlicerManager(4);
849 qApp->processEvents();
851 bool SetImageSucceed=false;
853 // Change filename if an image with the same already exist
854 int number = GetImageDuplicateFilenameNumber(files[i] + std::string("_slice"));
856 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME || filetype == vvImageReader::SLICED)
857 SetImageSucceed = imageManager->SetImage(files[i],filetype, number, j);
859 SetImageSucceed = imageManager->SetImages(files,filetype, number);
861 if (!SetImageSucceed) {
862 QApplication::restoreOverrideCursor();
863 QString error = "Cannot open file \n";
864 error += imageManager->GetLastError().c_str();
865 QMessageBox::information(this,tr("Reading problem"),error);
868 mSlicerManagers.push_back(imageManager);
870 //create an item in the tree with good settings
871 QTreeWidgetItem *item = new QTreeWidgetItem();
872 item->setData(0,Qt::UserRole,files[i].c_str());
873 QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
874 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
875 item->setData(1,Qt::UserRole,tr("image"));
876 item->setToolTip(COLUMN_IMAGE_NAME, imageManager->GetListOfAbsoluteFilePathInOneString("image").c_str());
877 qApp->processEvents();
879 //Create the buttons for reload and close
880 qApp->processEvents();
881 QTreePushButton* cButton = new QTreePushButton;
882 cButton->setItem(item);
883 cButton->setColumn(COLUMN_CLOSE_IMAGE);
884 cButton->setToolTip(tr("close image"));
885 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
886 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
887 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
889 QTreePushButton* rButton = new QTreePushButton;
890 rButton->setItem(item);
891 rButton->setColumn(COLUMN_RELOAD_IMAGE);
892 rButton->setToolTip(tr("reload image"));
893 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
894 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
895 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
897 DataTree->addTopLevelItem(item);
898 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
899 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
901 //set the id of the image
902 QString id = QDir::current().absoluteFilePath(files[i].c_str()) + QString::number(mSlicerManagers.size()-1);
903 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
904 mSlicerManagers.back()->SetId(id.toStdString());
906 linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
908 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
909 this,SLOT(CurrentImageChanged(std::string)));
910 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
911 this, SLOT(CurrentPickedImageChanged(std::string)));
912 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
913 this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
914 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
915 this, SLOT(VectorChanged(int,double,double,double, double)));
916 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
917 this, SLOT(OverlayChanged(int,double,double)));
918 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
919 this, SLOT(FusionChanged(int,double)));
920 //connect(mSlicerManagers.back(), SIGNAL(UpdateFusionSequence(int, bool, unsigned int)),
921 // this, SLOT(FusionSequenceChanged(int, bool, unsigned int)));
922 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
923 this,SLOT(WindowLevelChanged()));
924 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
925 this,SLOT(UpdateSlice(int,int)));
926 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
927 this,SLOT(UpdateTSlice(int, int)));
928 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
929 this,SLOT(ImageInfoChanged()));
930 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
931 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
932 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
933 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
934 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
935 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
936 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
937 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
938 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
940 numberofsuccesulreads++;
944 if (numberofsuccesulreads) {
945 NOViewWidget->show();
946 NEViewWidget->show();
947 SOViewWidget->show();
948 SEViewWidget->show();
953 // Try to guess default WindowLevel
955 mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
956 if ((range[0] == 0) && (range[1] == 1)) {
957 presetComboBox->setCurrentIndex(5);// binary
962 QApplication::restoreOverrideCursor();
964 //------------------------------------------------------------------------------
966 //------------------------------------------------------------------------------
967 void vvMainWindow::UpdateTree()
969 DataTree->resizeColumnToContents(COLUMN_TREE);
970 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
971 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
972 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
973 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
974 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
975 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
976 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
978 //------------------------------------------------------------------------------
980 //------------------------------------------------------------------------------
981 void vvMainWindow::CurrentImageChanged(std::string id)
983 if (id == mCurrentSelectedImageId) return; // Do nothing
985 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
986 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
989 DataTree->topLevelItem(i)->setSelected(0);
991 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
992 DataTree->topLevelItem(i)->child(child)->setSelected(0);
995 DataTree->topLevelItem(selected)->setSelected(1);
996 mCurrentSelectedImageId = id;
997 emit SelectedImageHasChanged(mSlicerManagers[selected]);
999 //------------------------------------------------------------------------------
1001 //------------------------------------------------------------------------------
1002 void vvMainWindow::CurrentPickedImageChanged(std::string id)
1004 if (id == mCurrentPickedImageId) return; // Do nothing
1006 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1007 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
1010 DataTree->topLevelItem(i)->setSelected(0);
1012 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
1013 DataTree->topLevelItem(i)->child(child)->setSelected(0);
1016 DataTree->topLevelItem(selected)->setSelected(1);
1017 mCurrentPickedImageId = id;
1018 mCurrentPickedImageIndex = selected;
1020 //------------------------------------------------------------------------------
1022 //------------------------------------------------------------------------------
1023 void vvMainWindow::ImageInfoChanged()
1025 contextActions[6]->setEnabled(1);
1026 contextActions[5]->setEnabled(1);
1027 actionSave_As->setEnabled(1);
1028 actionAdd_VF_to_current_Image->setEnabled(1);
1029 actionAdd_fusion_image->setEnabled(1);
1030 actionAdd_overlay_image_to_current_image->setEnabled(1);
1031 actionAdd_USSequence_toCT->setEnabled(1);
1032 actionNorth_East_Window->setEnabled(1);
1033 actionNorth_West_Window->setEnabled(1);
1034 actionSouth_East_Window->setEnabled(1);
1035 actionSouth_West_Window->setEnabled(1);
1036 vvToolManager::GetInstance()->EnableToolsInMenu(this, true);
1037 inverseButton->setEnabled(1);
1039 goToCursorPushButton->setEnabled(1);
1041 if (DataTree->selectedItems().size()) {
1042 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1044 colorMapComboBox->setEnabled(1);
1045 for (int i = 0; i < DataTree->topLevelItem(index)->childCount(); i++) {
1046 if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
1047 DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion" ||
1048 DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusionSequence") {
1049 colorMapComboBox->setEnabled(0);
1054 std::vector<double> origin;
1055 std::vector<double> inputSpacing;
1056 std::vector<int> inputSize;
1057 std::vector<double> sizeMM;
1058 vtkSmartPointer<vtkMatrix4x4> transformation;
1061 QString inputSizeInBytes;
1062 QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1064 int nframes = mSlicerManagers[index]->GetSlicer(0)->GetTMax();
1066 if (nframes > 1 || playMode == 1) {
1067 playButton->setEnabled(1);
1068 frameRateLabel->setEnabled(1);
1069 frameRateSpinBox->setEnabled(1);
1071 playButton->setEnabled(0);
1072 frameRateLabel->setEnabled(0);
1073 frameRateSpinBox->setEnabled(0);
1080 vvImage::Pointer imageSelected;
1081 if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
1082 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1083 tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
1084 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
1085 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
1086 tSlice = mSlicerManagers[index]->GetSlicer(0)->GetOverlayTSlice();
1087 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
1088 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
1089 tSlice = mSlicerManagers[index]->GetSlicer(0)->GetOverlayTSlice();
1090 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
1091 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
1092 tSlice = mSlicerManagers[index]->GetSlicer(0)->GetFusionTSlice();
1094 else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusionSequence") {
1095 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
1096 tSlice = mSlicerManagers[index]->GetSlicer(0)->GetFusionTSlice();
1098 else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "contour") {
1099 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1100 tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
1103 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1104 tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
1107 dimension = imageSelected->GetNumberOfDimensions();
1108 origin.resize(dimension);
1109 inputSpacing.resize(dimension);
1110 inputSize.resize(dimension);
1111 sizeMM.resize(dimension);
1112 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1113 for (int i = 0; i < dimension; i++) {
1114 origin[i] = imageSelected->GetOrigin()[i];
1115 inputSpacing[i] = imageSelected->GetSpacing()[i];
1116 inputSize[i] = imageSelected->GetSize()[i];
1117 sizeMM[i] = inputSize[i]*inputSpacing[i];
1118 NPixel *= inputSize[i];
1120 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1122 QString dim = QString::number(dimension) + " (";
1123 dim += pixelType + ")";
1125 infoPanel->setFileName(image);
1126 infoPanel->setDimension(dim);
1127 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1128 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1129 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1130 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1131 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1133 transformation = imageSelected->GetTransform()[tSlice]->GetMatrix();
1134 infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
1136 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1137 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1138 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1139 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1141 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1142 for (int i = 0; i < 4; i++) {
1143 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1144 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1149 infoPanel->setFileName(image);
1150 infoPanel->setDimension(dim);
1151 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1152 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1153 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1154 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1155 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1157 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1158 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1159 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1160 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1162 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1163 for (int i = 0; i < 4; i++) {
1164 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1165 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1169 WindowLevelChanged();
1171 slicingPresetComboBox->setCurrentIndex(mSlicerManagers[index]->GetSlicingPreset());
1173 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
1174 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1175 overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
1176 mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
1177 mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
1179 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1180 overlayPanel->getVFProperty(-1,-1,-1);
1182 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
1183 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1185 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1188 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
1189 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1191 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1195 //------------------------------------------------------------------------------
1197 //------------------------------------------------------------------------------
1198 void vvMainWindow::ShowDocumentation()
1200 documentation->show();
1202 //------------------------------------------------------------------------------
1204 //------------------------------------------------------------------------------
1205 void vvMainWindow::PopupRegisterForm(bool checkCanPush)
1207 vvRegisterForm* registerForm = new vvRegisterForm(QUrl("http://www.creatis.insa-lyon.fr/~dsarrut/vvregister/write.php"), getVVSettingsPath(), getSettingsOptionFormat());
1209 registerForm->show();
1211 if(registerForm->canPush()) {
1212 registerForm->show();
1213 registerForm->acquitPushed();//too bad if there is not internet connection anymore.
1217 //------------------------------------------------------------------------------
1219 //------------------------------------------------------------------------------
1220 void vvMainWindow::ShowHelpDialog()
1222 help_dialog->show();
1224 //------------------------------------------------------------------------------
1226 //------------------------------------------------------------------------------
1227 void vvMainWindow::ChangeViewMode()
1229 typedef struct _SIZE{
1230 QSplitter* splitter;
1231 QList<int> size1, size2;
1234 SplitterSize sizes[4];
1235 sizes[0].splitter = OSplitter;
1236 sizes[0].size1.push_back(1);
1237 sizes[0].size1.push_back(0);
1238 sizes[0].size2.push_back(1);
1239 sizes[0].size2.push_back(0);
1240 sizes[0].cols[0] = 2;
1241 sizes[0].cols[1] = 3;
1242 sizes[0].cols[2] = 4;
1244 sizes[1].splitter = ESplitter;
1245 sizes[1].size1.push_back(0);
1246 sizes[1].size1.push_back(1);
1247 sizes[1].size2.push_back(1);
1248 sizes[1].size2.push_back(0);
1249 sizes[1].cols[0] = 1;
1250 sizes[1].cols[1] = 3;
1251 sizes[1].cols[2] = 4;
1253 sizes[2].splitter = OSplitter;
1254 sizes[2].size1.push_back(1);
1255 sizes[2].size1.push_back(0);
1256 sizes[2].size2.push_back(0);
1257 sizes[2].size2.push_back(1);
1258 sizes[2].cols[0] = 1;
1259 sizes[2].cols[1] = 2;
1260 sizes[2].cols[2] = 4;
1262 sizes[3].splitter = ESplitter;
1263 sizes[3].size1.push_back(0);
1264 sizes[3].size1.push_back(1);
1265 sizes[3].size2.push_back(0);
1266 sizes[3].size2.push_back(1);
1267 sizes[3].cols[0] = 1;
1268 sizes[3].cols[1] = 2;
1269 sizes[3].cols[2] = 3;
1271 int slicer = mSlicerManagers[mCurrentPickedImageIndex]->GetSelectedSlicer();
1272 if (viewMode == 1) {
1275 splitter_3->setSizes(sizes[slicer].size1);
1276 sizes[slicer].splitter->setSizes(sizes[slicer].size2);
1277 DataTree->setColumnHidden(sizes[slicer].cols[0],1);
1278 DataTree->setColumnHidden(sizes[slicer].cols[1],1);
1279 DataTree->setColumnHidden(sizes[slicer].cols[2],1);
1287 splitter_3->setSizes(size);
1288 sizes[slicer].splitter->setSizes(size);
1289 DataTree->setColumnHidden(sizes[slicer].cols[0],0);
1290 DataTree->setColumnHidden(sizes[slicer].cols[1],0);
1291 DataTree->setColumnHidden(sizes[slicer].cols[2],0);
1294 UpdateRenderWindows();
1296 ** I don't know why but for both resized QVTKWidget we also need to render
1297 ** the associated Slicer to redraw crosses.
1299 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1300 // if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
1301 mSlicerManagers[i]->GetSlicer(0)->Render();
1302 mSlicerManagers[i]->GetSlicer(1)->Render();
1303 // if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
1304 mSlicerManagers[i]->GetSlicer(2)->Render();
1305 mSlicerManagers[i]->GetSlicer(3)->Render();
1308 //------------------------------------------------------------------------------
1310 //------------------------------------------------------------------------------
1311 QString vvMainWindow::GetSizeInBytes(unsigned long size)
1313 QString result = "";// QString::number(size);
1314 //result += " bytes (";
1315 if (size > 1000000000) {
1317 result += QString::number(size);
1318 result += "Gb";//)";
1319 } else if (size > 1000000) {
1321 result += QString::number(size);
1322 result += "Mb";//)";
1323 } else if (size > 1000) {
1325 result += QString::number(size);
1326 result += "kb";//)";
1330 //------------------------------------------------------------------------------
1332 //------------------------------------------------------------------------------
1333 QString vvMainWindow::Get4x4MatrixDoubleAsString(vtkSmartPointer<vtkMatrix4x4> matrix, const int precision)
1335 std::ostringstream strmatrix;
1337 // Figure out the number of digits of the integer part of the largest absolute value
1340 for (unsigned int j = 0; j < 4; j++){
1342 for (unsigned int i = 0; i < 4; i++)
1343 absmax = std::max(absmax, vnl_math_abs(matrix->GetElement(i, j)));
1344 unsigned ndigits = (unsigned)std::max(0.,std::log10(absmax))+1;
1345 width[j] = precision+ndigits+3;
1348 // Output with correct width, aligned to the right
1349 for (unsigned int i = 0; i < 4; i++) {
1350 for (unsigned int j = 0; j < 4; j++) {
1351 strmatrix.setf(ios::fixed,ios::floatfield);
1352 strmatrix.precision(precision);
1353 strmatrix.fill(' ');
1354 strmatrix.width(width[j]);
1355 strmatrix << std::right << matrix->GetElement(i, j);
1357 strmatrix << std::endl;
1359 QString result = strmatrix.str().c_str();
1362 //------------------------------------------------------------------------------
1364 //------------------------------------------------------------------------------
1365 QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble)
1368 for (unsigned int i= 0; i < vectorDouble.size(); i++) {
1371 result += QString::number(vectorDouble[i]);
1375 //------------------------------------------------------------------------------
1377 //------------------------------------------------------------------------------
1378 QString vvMainWindow::GetVectorIntAsString(std::vector<int> vectorInt)
1381 for (unsigned int i= 0; i < vectorInt.size(); i++) {
1384 result += QString::number(vectorInt[i]);
1388 //------------------------------------------------------------------------------
1390 //------------------------------------------------------------------------------
1391 int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item)
1393 QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1394 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1395 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1400 //------------------------------------------------------------------------------
1402 //------------------------------------------------------------------------------
1403 QTreeWidgetItem* vvMainWindow::GetItemFromSlicerManager(vvSlicerManager* sm)
1405 QString id = sm->GetId().c_str();
1406 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1407 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1408 return DataTree->topLevelItem(i);
1412 //------------------------------------------------------------------------------
1414 //------------------------------------------------------------------------------
1415 void vvMainWindow::DisplayChanged(QTreeWidgetItem *clickedItem, int column)
1417 if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
1420 // Get parent information (might be the same item)
1421 int slicerManagerIndex = GetSlicerIndexFromItem(clickedItem);
1422 QTreeWidgetItem* clickedParentItem = DataTree->topLevelItem(slicerManagerIndex);
1423 vvSlicer* clickedSlicer = mSlicerManagers[slicerManagerIndex]->GetSlicer(column-1);
1425 // Go over the complete item tree (only 2 levels, parents and children)
1426 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1427 // Trick to avoid redoing twice the job for a key (sr)
1428 mSlicerManagers[i]->GetSlicer(column-1)->GetRenderWindow()->GetInteractor()->SetKeySym("Crap");
1430 QTreeWidgetItem* currentParentItem = DataTree->topLevelItem(i);
1431 if(currentParentItem != clickedParentItem) {
1432 // Not the branch of the clicked item, uncheck all
1435 currentParentItem->setData(column,Qt::CheckStateRole, 0);
1436 mSlicerManagers[i]->UpdateSlicer(column-1, false);
1439 for (int iChild = 0; iChild < currentParentItem->childCount(); iChild++) {
1440 currentParentItem->child(iChild)->setData(column,Qt::CheckStateRole, 0);
1444 // Branch of the clicked one: get check status from actor visibility in slicer
1445 // and toggle the clicked one
1448 bool vis = clickedSlicer->GetActorVisibility("image", 0);
1449 bool draw = clickedSlicer->GetRenderer()->GetDraw();
1451 // Update slicer (after getting visibility)
1452 mSlicerManagers[slicerManagerIndex]->UpdateSlicer(column-1, true);
1453 mSlicerManagers[slicerManagerIndex]->UpdateInfoOnCursorPosition(column-1);
1454 DisplaySliders(slicerManagerIndex, column-1);
1455 if(clickedParentItem == clickedItem) {
1457 vis = !draw || !vis;
1459 clickedSlicer->SetActorVisibility("image", 0, vis);
1460 clickedParentItem->setData(column, Qt::CheckStateRole, vis?2:0);
1463 std::map<std::string, int> actorTypeCounts;
1464 for (int iChild = 0; iChild < clickedParentItem->childCount(); iChild++) {
1465 QTreeWidgetItem* currentChildItem = clickedParentItem->child(iChild);
1466 std::string actorType = currentChildItem->data(1,Qt::UserRole).toString().toStdString();
1467 vis = clickedSlicer->GetActorVisibility(actorType, actorTypeCounts[actorType]);
1468 if(currentChildItem == clickedItem) {
1469 // Toggle or force visibility if it was not on this branch so far
1470 vis = !draw || !vis;
1471 clickedSlicer->SetActorVisibility(actorType, actorTypeCounts[actorType], vis);
1473 currentChildItem->setData(column, Qt::CheckStateRole, vis?2:0);
1474 actorTypeCounts[actorType]++;
1479 clickedSlicer->Render();
1481 //------------------------------------------------------------------------------
1483 void vvMainWindow::InitSlicers()
1485 if (mSlicerManagers.size()) {
1486 mSlicerManagers.back()->GenerateDefaultLookupTable();
1488 mSlicerManagers.back()->SetSlicerWindow(0,NOViewWidget->GetRenderWindow());
1489 mSlicerManagers.back()->SetSlicerWindow(1,NEViewWidget->GetRenderWindow());
1490 mSlicerManagers.back()->SetSlicerWindow(2,SOViewWidget->GetRenderWindow());
1491 mSlicerManagers.back()->SetSlicerWindow(3,SEViewWidget->GetRenderWindow());
1495 //------------------------------------------------------------------------------
1496 void vvMainWindow::InitDisplay()
1498 if (mSlicerManagers.size()) {
1499 //BE CAREFUL : this is absolutely necessary to set the interactor style
1500 //in order to have the same style instanciation for all SlicerManagers in
1502 for (int j = 0; j < 4; j++) {
1503 vvInteractorStyleNavigator* style = vvInteractorStyleNavigator::New();
1504 style->SetAutoAdjustCameraClippingRange(1);
1505 bool AlreadySelected = false;
1506 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1507 mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
1509 //select the image only if previous are not selected
1510 if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1) {
1511 mSlicerManagers[i]->UpdateSlicer(j,1);
1512 AlreadySelected = true;
1513 } else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected) {
1514 if (DataTree->selectedItems().size() == 0)
1515 DataTree->topLevelItem(i)->setSelected(1);
1516 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
1517 mSlicerManagers[i]->UpdateSlicer(j,1);
1518 DisplaySliders(i,j);
1520 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,0);
1521 mSlicerManagers[i]->UpdateSlicer(j,0);
1528 //------------------------------------------------------------------------------
1530 //------------------------------------------------------------------------------
1531 void vvMainWindow::DisplaySliders(int slicer, int window)
1533 if(!mSlicerManagers[slicer]->GetSlicer(window)->GetRenderer()->GetDraw())
1537 mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
1538 int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
1540 verticalSliders[window]->show();
1542 verticalSliders[window]->hide();
1543 verticalSliders[window]->setRange(range[0],range[1]);
1544 verticalSliders[window]->setValue(position);
1548 tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
1550 horizontalSliders[window]->show();
1552 horizontalSliders[window]->hide();
1553 horizontalSliders[window]->setRange(tRange[0],tRange[1]);
1554 int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetMaxCurrentTSlice();
1555 horizontalSliders[window]->setValue(tPosition);
1557 //------------------------------------------------------------------------------
1559 //------------------------------------------------------------------------------
1560 void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column)
1562 int index = GetSlicerIndexFromItem(item);
1564 if (DataTree->topLevelItem(index) != item) {
1565 QString warning = "Do you really want to close the overlay : ";
1566 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1567 QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
1569 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1570 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1571 if (msgBox.exec() == QMessageBox::AcceptRole) {
1572 std::string overlay_type=item->data(1,Qt::UserRole).toString().toStdString();
1573 int overlay_index=0;
1574 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++) {
1575 if (DataTree->topLevelItem(index)->\
1576 child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1578 if (DataTree->topLevelItem(index)->child(child) == item) break;
1580 mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
1581 mSlicerManagers[index]->SetColorMap(0);
1582 DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
1583 mSlicerManagers[index]->Render();
1585 } else if (DataTree->topLevelItemCount() <= 1) {
1586 QString warning = "Do you really want to close the image : ";
1587 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1588 warning += "\nThis is the last image, you're about to close vv !!!";
1589 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1591 msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
1592 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1593 if (msgBox.exec() == QMessageBox::AcceptRole) {
1597 QString warning = "Do you really want to close the image : ";
1598 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1599 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1601 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1602 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1603 if (msgBox.exec() == QMessageBox::AcceptRole) {
1605 // Tell tools that we close an image
1606 emit AnImageIsBeingClosed(mSlicerManagers[index]);
1608 std::vector<vvSlicerManager*>::iterator Manageriter = mSlicerManagers.begin();
1609 DataTree->takeTopLevelItem(index);
1610 for (int i = 0; i < index; i++) {
1613 linkPanel->removeImage(index);
1614 mSlicerManagers[index]->RemoveActors();
1615 delete mSlicerManagers[index];
1616 mSlicerManagers.erase(Manageriter);
1624 //------------------------------------------------------------------------------
1626 //------------------------------------------------------------------------------
1627 void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column)
1629 // int index = GetSlicerIndexFromItem(item);
1630 // QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1631 // if (item->data(1,Qt::UserRole).toString() == "vector")
1632 // mSlicerManagers[index]->ReloadVF();
1634 // mSlicerManagers[index]->Reload();
1636 // QApplication::restoreOverrideCursor();
1637 int index = GetSlicerIndexFromItem(item);
1638 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1639 QString role=item->data(1,Qt::UserRole).toString();
1640 if ( role == "vector"){
1641 mSlicerManagers[index]->ReloadVF();
1643 else if (role == "overlay"){
1644 mSlicerManagers[index]->ReloadOverlay();
1646 else if (role == "fusion"){
1647 mSlicerManagers[index]->ReloadFusion();
1649 else if (role == "fusionSequence"){
1650 mSlicerManagers[index]->ReloadFusionSequence(); //same as for standard fusion
1653 mSlicerManagers[index]->Reload();
1655 // Update view and info
1657 mSlicerManagers[index]->Render();
1658 QApplication::restoreOverrideCursor();
1660 //------------------------------------------------------------------------------
1662 //------------------------------------------------------------------------------
1663 void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value)
1665 infoPanel->setCurrentInfo(visibility,x,y,z,X,Y,Z,value);
1667 //------------------------------------------------------------------------------
1669 //------------------------------------------------------------------------------
1670 void vvMainWindow::VectorChanged(int visibility,double x, double y, double z, double value)
1672 overlayPanel->getCurrentVectorInfo(visibility,x,y,z,value);
1674 //------------------------------------------------------------------------------
1676 //------------------------------------------------------------------------------
1677 void vvMainWindow::OverlayChanged(int visibility, double valueOver, double valueRef)
1679 overlayPanel->getCurrentOverlayInfo(visibility,valueOver, valueRef);
1681 //------------------------------------------------------------------------------
1683 //------------------------------------------------------------------------------
1684 void vvMainWindow::FusionChanged(int visibility, double value)
1686 overlayPanel->getCurrentFusionInfo(visibility,value);
1688 //------------------------------------------------------------------------------
1690 //------------------------------------------------------------------------------
1691 void vvMainWindow::WindowLevelChanged()
1694 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1695 if(index==-1) return;
1696 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1697 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1698 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1699 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1702 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay())
1703 overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor(),
1704 mSlicerManagers[index]->GetLinkOverlayWindowLevel(),
1705 mSlicerManagers[index]->GetOverlayColorWindow(),
1706 mSlicerManagers[index]->GetOverlayColorLevel());
1708 overlayPanel->getOverlayProperty(-1,0,0.,0.);
1710 // Fusion & SequenceFusion image
1711 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
1712 overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
1713 mSlicerManagers[index]->GetFusionThresholdOpacity(),
1714 mSlicerManagers[index]->GetFusionColorMap(),
1715 mSlicerManagers[index]->GetFusionWindow(),
1716 mSlicerManagers[index]->GetFusionLevel());
1717 overlayPanel->getFusionSequenceProperty(mSlicerManagers[index]->GetFusionSequenceFrameIndex(),
1718 mSlicerManagers[index]->GetFusionSequenceSpatialSyncFlag(),
1719 mSlicerManagers[index]->GetFusionSequenceNbFrames());
1721 else if ( mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()>=0 ) {
1722 //if the image is involved in a fusion sequence, preserve the overlay panel!
1723 int ind = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
1724 overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
1725 mSlicerManagers[ind]->GetFusionThresholdOpacity(),
1726 mSlicerManagers[ind]->GetFusionColorMap(),
1727 mSlicerManagers[ind]->GetFusionWindow(),
1728 mSlicerManagers[ind]->GetFusionLevel());
1729 overlayPanel->getFusionSequenceProperty(mSlicerManagers[ind]->GetFusionSequenceFrameIndex(),
1730 mSlicerManagers[ind]->GetFusionSequenceSpatialSyncFlag(),
1731 mSlicerManagers[ind]->GetFusionSequenceNbFrames());
1735 overlayPanel->getFusionProperty(-1, -1, -1, -1, -1);
1736 overlayPanel->getFusionSequenceProperty(-1, false, 0);
1739 //------------------------------------------------------------------------------
1741 //------------------------------------------------------------------------------
1742 void vvMainWindow::WindowLevelEdited()
1744 presetComboBox->setCurrentIndex(6);
1745 UpdateWindowLevel();
1747 //------------------------------------------------------------------------------
1749 //------------------------------------------------------------------------------
1750 void vvMainWindow::SetWindowLevel(double w, double l)
1752 windowSpinBox->setValue(w);
1753 levelSpinBox->setValue(l);
1754 presetComboBox->setCurrentIndex(6);
1755 colorMapComboBox->setCurrentIndex(0);
1756 UpdateWindowLevel();
1758 //------------------------------------------------------------------------------
1760 //------------------------------------------------------------------------------
1761 void vvMainWindow::UpdateWindowLevel()
1763 if (DataTree->selectedItems().size()) {
1764 if (presetComboBox->currentIndex() == 7) //For ventilation
1765 colorMapComboBox->setCurrentIndex(5);
1766 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1767 mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
1768 mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
1769 mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
1770 mSlicerManagers[index]->Render();
1771 WindowLevelChanged();
1774 //------------------------------------------------------------------------------
1776 //------------------------------------------------------------------------------
1777 void vvMainWindow::UpdateSlicingPreset()
1779 if (DataTree->selectedItems().size()) {
1780 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1781 mSlicerManagers[index]->SetSlicingPreset(vvSlicerManager::SlicingPresetType(slicingPresetComboBox->currentIndex()));
1784 //------------------------------------------------------------------------------
1786 //------------------------------------------------------------------------------
1787 void vvMainWindow::UpdateColorMap()
1789 if (DataTree->selectedItems().size()) {
1790 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1791 mSlicerManagers[index]->SetColorMap(colorMapComboBox->currentIndex());
1792 mSlicerManagers[index]->Render();
1795 //------------------------------------------------------------------------------
1796 void vvMainWindow::SwitchWindowLevel()
1798 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1799 int window = mSlicerManagers[index]->GetColorWindow();
1800 presetComboBox->setCurrentIndex(6);
1801 windowSpinBox->setValue(-window);
1802 UpdateWindowLevel();
1804 //------------------------------------------------------------------------------
1806 //------------------------------------------------------------------------------
1807 void vvMainWindow::ApplyWindowLevelToAllImages()
1809 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1810 if(index==-1) return;
1811 double window = mSlicerManagers[index]->GetColorWindow();
1812 double level = mSlicerManagers[index]->GetColorLevel();
1814 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1815 if (mSlicerManagers[i] == NULL)
1817 mSlicerManagers[i]->SetColorWindow(window);
1818 mSlicerManagers[i]->SetColorLevel(level);
1819 mSlicerManagers[i]->SetPreset(6);
1820 mSlicerManagers[i]->Render();
1823 //------------------------------------------------------------------------------
1825 //------------------------------------------------------------------------------
1826 void vvMainWindow::ApplyWindowToSetOfImages(double window, unsigned int indexMin, unsigned int indexMax)
1828 for (unsigned int i = indexMin; i <= indexMax && i < mSlicerManagers.size(); i++) {
1829 if (mSlicerManagers[i] == NULL)
1831 mSlicerManagers[i]->SetColorWindow(window);
1832 mSlicerManagers[i]->SetPreset(6);
1833 mSlicerManagers[i]->Render();
1836 //------------------------------------------------------------------------------
1838 //------------------------------------------------------------------------------
1839 void vvMainWindow::ApplyLevelToSetOfImages(double level, unsigned int indexMin, unsigned int indexMax)
1841 for (unsigned int i = indexMin; i <= indexMax && i < mSlicerManagers.size(); i++) {
1842 if (mSlicerManagers[i] == NULL)
1844 mSlicerManagers[i]->SetColorLevel(level);
1845 mSlicerManagers[i]->SetPreset(6);
1846 mSlicerManagers[i]->Render();
1849 //------------------------------------------------------------------------------
1851 //------------------------------------------------------------------------------
1852 void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
1854 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1855 if (mSlicerManagers[i]->GetId() == id) {
1856 //mSlicerManagers[i]->SetTSlice(temps);
1857 if (temps<0) { //for fusionSequence, special input used to avoid any automatic time synchronization...
1858 mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition( x,y,z, mSlicerManagers[i]->GetSlicer(slicer)->GetTSlice() );
1860 else mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
1861 mSlicerManagers[i]->UpdateViews(0,slicer);
1866 //------------------------------------------------------------------------------
1868 //------------------------------------------------------------------------------
1869 void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm, vvSlicer* refSlicer)
1871 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1872 if (id == mSlicerManagers[i]->GetId()) {
1873 mSlicerManagers[i]->UpdateLinkedNavigation(refSlicer);
1877 //------------------------------------------------------------------------------
1879 //------------------------------------------------------------------------------
1880 void vvMainWindow::ShowContextMenu(QPoint point)
1882 if (!DataTree->selectedItems().size()) {
1883 contextActions[1]->setEnabled(0);
1884 contextActions[2]->setEnabled(0);
1885 contextActions[3]->setEnabled(0);
1886 contextActions[4]->setEnabled(0);
1887 contextActions[5]->setEnabled(0);
1888 contextActions[6]->setEnabled(0);
1890 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1891 contextActions[1]->setEnabled(1);
1892 contextActions[2]->setEnabled(
1893 DataTree->itemWidget(DataTree->selectedItems()[0],
1894 COLUMN_RELOAD_IMAGE)->isEnabled());
1895 contextActions[3]->setEnabled(1);
1896 contextActions[5]->setEnabled(1);
1897 contextActions[6]->setEnabled(1);
1899 if (mSlicerManagers[index]->GetDimension() < 3)
1900 contextActions[4]->setEnabled(0);
1902 contextActions[4]->setEnabled(1);
1904 contextMenu.exec(QCursor::pos());
1906 //------------------------------------------------------------------------------
1908 //------------------------------------------------------------------------------
1909 void vvMainWindow::CloseImage()
1911 CloseImage(DataTree->selectedItems()[0],0);
1913 //------------------------------------------------------------------------------
1915 //------------------------------------------------------------------------------
1916 void vvMainWindow::ReloadImage()
1918 ReloadImage(DataTree->selectedItems()[0],0);
1920 //------------------------------------------------------------------------------
1922 //------------------------------------------------------------------------------
1923 void vvMainWindow::SelectOverlayImage()
1925 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1927 //check if one overlay image is added
1928 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1929 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay") {
1930 QString error = "Cannot add more than one compared image\n";
1931 error += "Please remove first ";
1932 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1933 QMessageBox::information(this,tr("Problem adding compared image !"),error);
1937 QString Extensions = EXTENSIONS;
1938 Extensions += ";;All Files (*)";
1939 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image"),mInputPathName,Extensions);
1940 if (files.isEmpty())
1943 std::vector<std::string> vecFileNames;
1944 for (int i = 0; i < files.size(); i++) {
1945 vecFileNames.push_back(files[i].toStdString());
1947 AddOverlayImage(index,vecFileNames,vvImageReader::IMAGE);
1949 //------------------------------------------------------------------------------
1951 //------------------------------------------------------------------------------
1952 void vvMainWindow::AddOverlayImage(int index, std::vector<std::string> fileNames, vvImageReader::LoadedImageType type)
1954 QString file(fileNames[0].c_str());
1955 if (QFile::exists(file))
1957 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1958 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1959 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1960 reader->SetFileName(fileNames[0].c_str());
1961 reader->ReadImageInformation();
1962 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1963 int dimension = reader->GetNumberOfDimensions();
1964 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1965 vvProgressDialog progress("Opening " + file.toStdString());
1966 qApp->processEvents();
1968 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1969 if (mSlicerManagers[index]->SetOverlay(fileNames,dimension, component,type)) {
1970 //create an item in the tree with good settings
1971 QTreeWidgetItem *item = new QTreeWidgetItem();
1972 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1973 item->setData(1,Qt::UserRole,tr("overlay"));
1974 QFileInfo fileinfo(file); //Do not show the path
1975 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
1976 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("overlay").c_str());
1977 qApp->processEvents();
1979 for (int j = 1; j <= 4; j++) {
1980 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1983 //Create the buttons for reload and close
1984 qApp->processEvents();
1985 QTreePushButton* cButton = new QTreePushButton;
1986 cButton->setItem(item);
1987 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1988 cButton->setToolTip(tr("close image"));
1989 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1990 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1991 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1993 QTreePushButton* rButton = new QTreePushButton;
1994 rButton->setItem(item);
1995 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1996 rButton->setToolTip(tr("reload image"));
1997 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1998 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1999 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2001 DataTree->topLevelItem(index)->setExpanded(1);
2002 DataTree->topLevelItem(index)->addChild(item);
2003 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2004 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2006 //set the id of the image
2007 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2008 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2010 qApp->processEvents();
2012 QApplication::restoreOverrideCursor();
2014 // Update the display to update, e.g., the sliders
2015 for(int i=0; i<4; i++)
2016 DisplaySliders(index, i);
2018 QApplication::restoreOverrideCursor();
2019 QString error = "Cannot import the new image.\n";
2020 error += mSlicerManagers[index]->GetLastError().c_str();
2021 QMessageBox::information(this,tr("Problem reading image !"),error);
2023 WindowLevelChanged();
2026 QMessageBox::information(this,tr("Problem reading Overlay !"),"File doesn't exist!");
2028 //------------------------------------------------------------------------------
2031 //------------------------------------------------------------------------------
2032 void vvMainWindow::AddROI(int index, QString file)
2035 // Get slice manager
2039 vvImageReader * mReader = new vvImageReader;
2040 mReader->SetInputFilename(filename.toStdString());
2041 mReader->Update(IMAGE);
2042 if (mReader->GetLastError().size() != 0) {
2043 std::cerr << "Error while reading " << filename.toStdString() << std::endl;
2044 QString error = "Cannot open file \n";
2045 error += mReader->GetLastError().c_str();
2046 QMessageBox::information(this,tr("Reading problem"),error);
2050 vvImage::Pointer roi = mReader->GetOutput();
2052 // Create roi in new tool
2053 vvToolStructureSetManager::AddImage(mCurrentSlicerManager, roi);
2056 //------------------------------------------------------------------------------
2058 //------------------------------------------------------------------------------
2059 void vvMainWindow::SelectFusionImage()
2061 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2063 //check if one fusion image is added
2064 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
2065 if ( (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") ||
2066 (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusionSequence") ) {
2067 QString error = "Cannot add more than one fusion image\n";
2068 error += "Please remove first ";
2069 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
2070 QMessageBox::information(this,tr("Problem adding fusion image !"),error);
2074 QString Extensions = EXTENSIONS;
2075 Extensions += ";;All Files (*)";
2076 QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
2077 if (!file.isEmpty())
2078 AddFusionImage(index,file);
2080 //------------------------------------------------------------------------------
2082 //------------------------------------------------------------------------------
2083 void vvMainWindow::ResetTransformationToIdentity()
2085 std::string actorType = DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString().toStdString();
2086 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2087 mSlicerManagers[index]->ResetTransformationToIdentity(actorType);
2090 //------------------------------------------------------------------------------
2092 //------------------------------------------------------------------------------
2093 void vvMainWindow::AddFusionImage(int index, QString file)
2095 if (QFile::exists(file))
2097 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2098 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
2099 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
2100 reader->SetFileName(file.toStdString().c_str());
2101 reader->ReadImageInformation();
2102 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
2104 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2105 vvProgressDialog progress("Opening fusion");
2106 qApp->processEvents();
2108 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2109 if (mSlicerManagers[index]->SetFusion(file.toStdString(),
2110 reader->GetNumberOfDimensions(), component)) {
2111 //create an item in the tree with good settings
2112 QTreeWidgetItem *item = new QTreeWidgetItem();
2113 item->setData(0,Qt::UserRole,file.toStdString().c_str());
2114 item->setData(1,Qt::UserRole,tr("fusion"));
2115 QFileInfo fileinfo(filename.c_str()); //Do not show the path
2116 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
2117 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusion").c_str());
2118 qApp->processEvents();
2120 for (int j = 1; j <= 4; j++) {
2121 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2124 //Create the buttons for reload and close
2125 qApp->processEvents();
2126 QTreePushButton* cButton = new QTreePushButton;
2127 cButton->setItem(item);
2128 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2129 cButton->setToolTip(tr("close image"));
2130 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2131 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2132 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2134 QTreePushButton* rButton = new QTreePushButton;
2135 rButton->setItem(item);
2136 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2137 rButton->setToolTip(tr("reload image"));
2138 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2139 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2140 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2142 DataTree->topLevelItem(index)->setExpanded(1);
2143 DataTree->topLevelItem(index)->addChild(item);
2144 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2145 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2147 //set the id of the image
2148 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2149 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2151 qApp->processEvents();
2153 QApplication::restoreOverrideCursor();
2155 QApplication::restoreOverrideCursor();
2156 QString error = "Cannot import the new image.\n";
2157 error += mSlicerManagers[index]->GetLastError().c_str();
2158 QMessageBox::information(this,tr("Problem reading image !"),error);
2161 QString error = "Cannot import the new image.\n";
2162 QMessageBox::information(this,tr("Problem reading image !"),error);
2166 QMessageBox::information(this,tr("Problem reading Fusion !"),"File doesn't exist!");
2168 //------------------------------------------------------------------------------
2171 //------------------------------------------------------------------------------
2172 void vvMainWindow::OpenField()
2174 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2175 //check if a vector field has already been added
2176 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
2177 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector") {
2178 QString error = "Cannot add more than one vector field\n";
2179 error += "Please remove first ";
2180 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
2181 QMessageBox::information(this,tr("Problem adding vector field!"),error);
2185 QString Extensions = "Images ( *.mhd)";
2186 Extensions += ";;Images ( *.mha)";
2187 Extensions += ";;VF Images ( *.vf)";
2188 Extensions += ";;nii Images ( *.nii)";
2189 Extensions += ";;nrrd Images ( *.nrrd)";
2190 Extensions += ";;nhdr Images ( *.nhdr)";
2191 Extensions += ";;All Files (*)";
2192 QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
2193 if (!file.isEmpty())
2194 AddField(file,index);
2196 //------------------------------------------------------------------------------
2199 //------------------------------------------------------------------------------
2200 void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
2202 //create an item in the tree with good settings
2203 QTreeWidgetItem *item = new QTreeWidgetItem();
2204 item->setData(0,Qt::UserRole,filename.toStdString().c_str());
2205 item->setData(1,Qt::UserRole,tr("vector"));
2206 QFileInfo fileinfo(filename); //Do not show the path
2207 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
2208 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("vector").c_str());
2209 qApp->processEvents();
2211 for (int j = 1; j <= 4; j++) {
2212 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2215 //Create the buttons for reload and close
2216 qApp->processEvents();
2217 QTreePushButton* cButton = new QTreePushButton;
2218 cButton->setItem(item);
2219 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2220 cButton->setToolTip(tr("close vector field"));
2221 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2222 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2223 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2225 QTreePushButton* rButton = new QTreePushButton;
2226 rButton->setItem(item);
2227 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2228 rButton->setToolTip(tr("reload vector field"));
2229 rButton->setEnabled(from_disk);
2230 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2231 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2232 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2234 DataTree->topLevelItem(index)->setExpanded(1);
2235 DataTree->topLevelItem(index)->addChild(item);
2236 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2237 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2239 //set the id of the image
2240 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2241 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2243 qApp->processEvents();
2245 QApplication::restoreOverrideCursor();
2247 //------------------------------------------------------------------------------
2250 //------------------------------------------------------------------------------
2251 void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
2253 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2254 vvSlicerManager* imageManager = mSlicerManagers[index];
2255 if (imageManager->SetVF(vf,file.toStdString())) {
2256 AddFieldEntry(file,index,false);
2258 QString error = "Cannot import the vector field for this image.\n";
2259 error += imageManager->GetLastError().c_str();
2260 QMessageBox::information(this,tr("Problem reading VF !"),error);
2262 QApplication::restoreOverrideCursor();
2264 //------------------------------------------------------------------------------
2267 //------------------------------------------------------------------------------
2268 void vvMainWindow::AddField(QString file,int index)
2270 if (QFile::exists(file)) {
2271 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2273 //init the progress events
2274 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2275 vvProgressDialog progress("Opening " + file.toStdString());
2276 qApp->processEvents();
2278 //read the vector and put it in the current mSlicerManager
2279 vvSlicerManager* imageManager = mSlicerManagers[index];
2280 qApp->processEvents();
2282 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2283 if (imageManager->SetVF(file.toStdString())) {
2284 imageManager->Render();
2285 AddFieldEntry(file,index,true);
2287 QApplication::restoreOverrideCursor();
2288 QString error = "Cannot import the vector field for this image.\n";
2289 error += imageManager->GetLastError().c_str();
2290 QMessageBox::information(this,tr("Problem reading VF !"),error);
2293 QMessageBox::information(this,tr("Problem reading VF !"),"File doesn't exist!");
2296 //------------------------------------------------------------------------------
2299 //------------------------------------------------------------------------------
2300 void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width, double r, double g, double b)
2302 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2303 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
2304 for (int i = 0; i < 4; i++) {
2305 mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
2306 mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
2307 mSlicerManagers[index]->GetSlicer(i)->SetVFWidth(width);
2308 mSlicerManagers[index]->GetSlicer(i)->SetVFColor(r,g,b);
2310 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
2312 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(0);
2316 //------------------------------------------------------------------------------
2319 //------------------------------------------------------------------------------
2320 void vvMainWindow::SetOverlayProperty(int color, int linked, double window, double level)
2322 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2323 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
2324 mSlicerManagers[index]->SetOverlayColor(color);
2325 mSlicerManagers[index]->SetColorMap(0);
2326 mSlicerManagers[index]->SetLinkOverlayWindowLevel(linked);
2327 mSlicerManagers[index]->SetOverlayColorWindow(window);
2328 mSlicerManagers[index]->SetOverlayColorLevel(level);
2329 mSlicerManagers[index]->Render();
2332 //------------------------------------------------------------------------------
2334 //------------------------------------------------------------------------------
2335 void vvMainWindow::SetFusionProperty(int opacity, int thresOpacity, int colormap,double window, double level, bool showLegend)
2337 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2338 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
2339 mSlicerManagers[index]->SetFusionColorMap(colormap);
2340 mSlicerManagers[index]->SetFusionOpacity(opacity);
2341 mSlicerManagers[index]->SetFusionThresholdOpacity(thresOpacity);
2342 mSlicerManagers[index]->SetFusionWindow(window);
2343 mSlicerManagers[index]->SetFusionLevel(level);
2344 mSlicerManagers[index]->SetFusionShowLegend(showLegend);
2345 mSlicerManagers[index]->SetColorMap(0);
2346 mSlicerManagers[index]->Render();
2349 //------------------------------------------------------------------------------
2352 //------------------------------------------------------------------------------
2353 void vvMainWindow::SelectFusionSequence()
2355 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2356 //check if one overlay image is added
2357 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
2358 if ( (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") ||
2359 (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusionSequence") ) {
2360 QString error = "Cannot add more than one compared image\n";
2361 error += "Please remove first ";
2362 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
2363 QMessageBox::information(this,tr("Problem adding compared image !"),error);
2367 QString Extensions = EXTENSIONS;
2368 Extensions += ";;All Files (*)";
2369 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image sequence"),mInputPathName,Extensions);
2370 if (files.isEmpty())
2373 std::vector<std::string> vecFileNames;
2374 for (int i = 0; i < files.size(); i++) {
2375 vecFileNames.push_back(files[i].toStdString());
2378 AddFusionSequence(index,vecFileNames,vvImageReader::MERGEDWITHTIME);
2380 //------------------------------------------------------------------------------
2382 //------------------------------------------------------------------------------
2383 void vvMainWindow::AddFusionSequence(int index, std::vector<std::string> fileNames, vvImageReader::LoadedImageType type)
2385 QString file(fileNames[0].c_str());
2386 if (QFile::exists(file))
2388 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2389 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
2390 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
2391 reader->SetFileName(fileNames[0].c_str());
2392 reader->ReadImageInformation();
2393 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
2394 int dimension = reader->GetNumberOfDimensions();
2395 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2396 vvProgressDialog progress("Opening " + file.toStdString());
2397 qApp->processEvents();
2399 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2401 if (mSlicerManagers[index]->SetFusionSequence(fileNames,dimension, component,type)) {
2402 //create an item in the tree with good settings
2403 QTreeWidgetItem *item = new QTreeWidgetItem();
2404 item->setData(0,Qt::UserRole,file.toStdString().c_str());
2405 item->setData(1,Qt::UserRole,tr("fusionSequence"));
2407 QFileInfo fileinfo(file); //Do not show the path
2408 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
2409 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusionSequence").c_str());
2410 qApp->processEvents();
2411 for (int j = 1; j <= 4; j++) {
2412 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2415 //Create the buttons for reload and close
2416 qApp->processEvents();
2417 QTreePushButton* cButton = new QTreePushButton;
2418 cButton->setItem(item);
2419 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2420 cButton->setToolTip(tr("close image"));
2421 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2422 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2423 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2425 QTreePushButton* rButton = new QTreePushButton;
2426 rButton->setItem(item);
2427 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2428 rButton->setToolTip(tr("reload image"));
2429 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2430 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2431 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2433 DataTree->topLevelItem(index)->setExpanded(1);
2434 DataTree->topLevelItem(index)->addChild(item);
2435 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2436 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2438 //store the original transform matrix
2439 int indexParent = GetSlicerIndexFromItem( DataTree->topLevelItem(index) );
2440 mSlicerManagers[indexParent]->SetFusionSequenceMainTransformMatrix( mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[0]->GetMatrix() );
2442 //set the id of the image
2443 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2444 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2446 qApp->processEvents();
2450 QApplication::restoreOverrideCursor();
2451 // Update the display to update, e.g., the sliders
2452 for(int i=0; i<4; i++)
2453 DisplaySliders(index, i);
2456 //TEST: also add the image as normal image, link it, and store its index in the SlicerManagersArray for tying it to the fusionSequence
2457 LoadImages(fileNames, type);
2458 //reset the transforms to identiy
2459 for (unsigned i=0 ; i<mSlicerManagers.back()->GetImage()->GetTransform().size() ; i++) {
2460 mSlicerManagers.back()->GetImage()->GetTransform()[i]->Identity();
2461 mSlicerManagers.back()->GetImage()->GetTransform()[i]->Update();
2464 //automatically link both images...
2465 AddLink(mSlicerManagers[indexParent]->GetId().c_str(), mSlicerManagers.back()->GetId().c_str(), false);
2467 //store the index ; this is also used as a flag to indicate that the images are involved in a fusionSequence...
2468 //TODO: reset these when exiting the visualization mode (unloading one of the images)
2469 mSlicerManagers[indexParent]->SetFusionSequenceIndexOfLinkedManager(mSlicerManagers.size()-1);
2470 mSlicerManagers.back()->SetFusionSequenceIndexOfLinkedManager(indexParent);
2473 QApplication::restoreOverrideCursor();
2474 QString error = "Cannot import the new image.\n";
2475 error += mSlicerManagers[index]->GetLastError().c_str();
2476 QMessageBox::information(this,tr("Problem reading image !"),error);
2478 WindowLevelChanged();
2481 QMessageBox::information(this,tr("Problem reading fusion sequence !"),"File doesn't exist!");
2486 //------------------------------------------------------------------------------
2489 //------------------------------------------------------------------------------
2490 void vvMainWindow::SetFusionSequenceProperty(int fusionSequenceFrameIndex, bool spatialSyncFlag, unsigned int fusionSequenceNbFrames)
2492 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2494 //check if the focus moved to the linked sequence, and in this case, select the master sequence instead
2495 if ( (!mSlicerManagers[index]->GetSlicer(0)->GetFusion()) && mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()>=0 ) {
2496 index = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
2499 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
2500 int indexParent = GetSlicerIndexFromItem( DataTree->topLevelItem(index) );
2502 //if the button is unchecked, then reposition the parent sequence (CT) in its original coordinate frame
2503 if ( (!spatialSyncFlag) && (mSlicerManagers[index]->GetFusionSequenceSpatialSyncFlag()) ) {
2504 for ( unsigned i=0 ; i<mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform().size() ; i++ ) {
2505 mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->SetMatrix( mSlicerManagers[index]->GetFusionSequenceMainTransformMatrix() );
2506 mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->Update();
2509 for (int i=0; i<mSlicerManagers[indexParent]->GetNumberOfSlicers(); i++) {
2510 mSlicerManagers[indexParent]->GetSlicer(i)->ForceUpdateDisplayExtent();
2511 mSlicerManagers[indexParent]->GetSlicer(i)->Render();
2515 //update the property values in the slicer manager
2516 mSlicerManagers[index]->SetFusionSequenceLength(fusionSequenceNbFrames);
2517 mSlicerManagers[index]->SetFusionSequenceSpatialSyncFlag(spatialSyncFlag);
2518 mSlicerManagers[index]->SetFusionSequenceFrameIndex(fusionSequenceFrameIndex);
2520 //show the right frame of the US sequence
2521 mSlicerManagers[index]->SetFusionSequenceTSlice(fusionSequenceFrameIndex);
2522 //update the linked sequence if possible
2523 if (mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()>0) {
2524 mSlicerManagers[ mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager() ]->SetTSlice(fusionSequenceFrameIndex, false);
2527 if (spatialSyncFlag) { //reslice the CT
2529 //Set the transform matrix of the parent sequence (typically CT / 4DCT)
2530 vtkSmartPointer<vtkMatrix4x4> tmpMat = vtkSmartPointer<vtkMatrix4x4>::New();
2531 vtkMatrix4x4::Invert( mSlicerManagers[index]->GetFusionSequenceInitialTransformMatrixAtFrame(fusionSequenceFrameIndex), tmpMat );
2532 for ( unsigned i=0 ; i<mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform().size() ; i++ ) {
2533 mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->SetMatrix( mSlicerManagers[index]->GetFusionSequenceMainTransformMatrix() );
2534 mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->PreMultiply();
2535 mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->Concatenate( tmpMat );
2536 mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->Update();
2539 for (int i=0; i<mSlicerManagers[indexParent]->GetNumberOfSlicers(); i++) {
2540 mSlicerManagers[indexParent]->GetSlicer(i)->ForceUpdateDisplayExtent();
2541 mSlicerManagers[indexParent]->GetSlicer(i)->Render();
2547 //------------------------------------------------------------------------------
2550 //------------------------------------------------------------------------------
2551 void vvMainWindow::SaveAs()
2553 if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
2554 QMessageBox::warning(this,tr("Unsupported type"),tr("Sorry, saving a vector field is unsupported for the moment"));
2558 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2559 int dimension = mSlicerManagers[index]->GetDimension();
2560 QStringList OutputListeFormat;
2561 OutputListeFormat.clear();
2562 if (dimension == 1) {
2563 OutputListeFormat.push_back(".mhd");
2564 OutputListeFormat.push_back(".mha");
2566 if (dimension == 2) {
2567 OutputListeFormat.push_back(".bmp");
2568 OutputListeFormat.push_back(".png");
2569 OutputListeFormat.push_back(".jpeg");
2570 OutputListeFormat.push_back(".tif");
2571 OutputListeFormat.push_back(".mhd");
2572 OutputListeFormat.push_back(".mha");
2573 OutputListeFormat.push_back(".hdr");
2574 OutputListeFormat.push_back(".vox");
2575 } else if (dimension == 3) {
2576 OutputListeFormat.push_back(".mhd");
2577 OutputListeFormat.push_back(".mha");
2578 OutputListeFormat.push_back(".nii");
2579 OutputListeFormat.push_back(".nrrd");
2580 OutputListeFormat.push_back(".nhdr");
2581 OutputListeFormat.push_back(".hdr");
2582 OutputListeFormat.push_back(".vox");
2583 } else if (dimension == 4) {
2584 OutputListeFormat.push_back(".mhd");
2585 OutputListeFormat.push_back(".mha");
2586 OutputListeFormat.push_back(".nii");
2587 OutputListeFormat.push_back(".nrrd");
2588 OutputListeFormat.push_back(".nhdr");
2590 QString Extensions = "AllFiles(*.*)";
2591 for (int i = 0; i < OutputListeFormat.count(); i++) {
2592 Extensions += ";;Images ( *";
2593 Extensions += OutputListeFormat[i];
2596 QString fileName = QFileDialog::getSaveFileName(this,
2598 mSlicerManagers[index]->GetFileName().c_str(),
2600 if (!fileName.isEmpty()) {
2601 std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
2602 if (OutputListeFormat.contains(
2603 fileformat.c_str())) {
2604 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2605 std::string action = "Saving";
2606 vvProgressDialog progress("Saving "+fileName.toStdString());
2607 qApp->processEvents();
2608 vvImageWriter::Pointer writer = vvImageWriter::New();
2609 writer->SetOutputFileName(fileName.toStdString());
2610 writer->SetInput(mSlicerManagers[index]->GetImage());
2612 // Check on transform and prompt user
2613 writer->SetSaveTransform(false);
2615 for(int i=0; i<4; i++)
2616 for(int j=0; j<4; j++) {
2617 // TODO SR and BP: check on the list of transforms and not the first only
2618 double elt = mSlicerManagers[index]->GetImage()->GetTransform()[0]->GetMatrix()->GetElement(i,j);
2625 QString warning = "The image has an associated linear transform. Do you want to save it along?";
2626 QMessageBox msgBox(QMessageBox::Warning, tr("Save transform"), warning, 0, this);
2627 msgBox.addButton(tr("Yes"), QMessageBox::AcceptRole);
2628 msgBox.addButton(tr("No"), QMessageBox::RejectRole);
2629 if (msgBox.exec() == QMessageBox::AcceptRole)
2630 writer->SetSaveTransform(true);
2634 QApplication::restoreOverrideCursor();
2635 if (writer->GetLastError().size()) {
2636 QString error = "Saving did not succeed\n";
2637 error += writer->GetLastError().c_str();
2638 QMessageBox::information(this,tr("Saving Problem"),error);
2642 QString error = fileformat.c_str();
2643 if (error.isEmpty())
2644 error += "no file format specified !";
2646 error += " format unknown !!!\n";
2647 QMessageBox::information(this,tr("Saving Problem"),error);
2652 //------------------------------------------------------------------------------
2654 //------------------------------------------------------------------------------
2655 void vvMainWindow::SaveCurrentState()
2657 QString Extensions = "XML Files(*.xml)";
2658 QString fileName = QFileDialog::getSaveFileName(this,
2659 tr("Save Current Window State"),
2663 SaveCurrentStateAs(fileName.toStdString());
2665 //------------------------------------------------------------------------------
2667 //------------------------------------------------------------------------------
2668 void vvMainWindow::SaveCurrentStateAs(const std::string& stateFile)
2670 vvSaveState save_state;
2671 save_state.Run(this, stateFile);
2674 //------------------------------------------------------------------------------
2675 void vvMainWindow::ReadSavedState()
2677 QString Extensions = "XML Files(*.xml)";
2678 QString fileName = QFileDialog::getOpenFileName(this,
2679 tr("Load Window State"),
2683 ReadSavedStateFile(fileName.toStdString());
2685 //------------------------------------------------------------------------------
2687 //------------------------------------------------------------------------------
2688 void vvMainWindow::ReadSavedStateFile(const std::string& stateFile)
2690 vvReadState read_state;
2691 read_state.Run(this, stateFile);
2693 //------------------------------------------------------------------------------
2695 //------------------------------------------------------------------------------
2696 void vvMainWindow::LinkAllImages()
2698 linkPanel->linkAll();
2701 //------------------------------------------------------------------------------
2702 void vvMainWindow::AddLink(QString image1,QString image2,bool fromPanel)
2705 // delegate to linkPanel if call came from elsewhere...
2706 linkPanel->addLinkFromIds(image1, image2);
2710 unsigned int sm1 = 0;
2711 unsigned int sm2 = 0;
2713 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2714 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2715 mSlicerManagers[i]->AddLink(image2.toStdString());
2718 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2719 mSlicerManagers[i]->AddLink(image1.toStdString());
2724 if (linkPanel->isLinkAll()) {
2725 emit UpdateLinkedNavigation(mSlicerManagers[sm1]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2726 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2728 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[sm1], mSlicerManagers[sm1]->GetSlicer(0));
2732 //------------------------------------------------------------------------------
2735 //------------------------------------------------------------------------------
2736 void vvMainWindow::RemoveLink(QString image1,QString image2)
2738 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2739 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2740 mSlicerManagers[i]->RemoveLink(image2.toStdString());
2742 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2743 mSlicerManagers[i]->RemoveLink(image1.toStdString());
2747 //------------------------------------------------------------------------------
2749 //------------------------------------------------------------------------------
2750 void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset)
2752 if(mSlicerManagers.size()==1)
2756 while(sm != mSlicerManagers[index])
2758 index = (index+offset+mSlicerManagers.size()) % mSlicerManagers.size();
2760 QTreeWidgetItem* item = GetItemFromSlicerManager(mSlicerManagers[index]);
2761 item->setData(slicer+1,Qt::CheckStateRole,2); //change checkbox
2762 CurrentImageChanged(mSlicerManagers[index]->GetId()); //select new image
2763 DisplayChanged(item,slicer+1);
2765 //------------------------------------------------------------------------------
2767 void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
2769 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2770 if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
2771 for (int j = 0; j < 4; j++) {
2772 mSlicerManagers[i]->SetTSliceInSlicer(value,j);
2773 //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
2774 //UpdateTSlice(j,value);
2776 mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
2781 //------------------------------------------------------------------------------
2784 //------------------------------------------------------------------------------
2785 void vvMainWindow::NOHorizontalSliderMoved()
2787 // if (mCurrentTime == NOHorizontalSlider->value()) return;
2788 HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
2789 // mCurrentTime = NOHorizontalSlider->value();
2791 //------------------------------------------------------------------------------
2794 //------------------------------------------------------------------------------
2795 void vvMainWindow::NEHorizontalSliderMoved()
2797 // if (mCurrentTime == NEHorizontalSlider->value()) return;
2798 HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
2799 // mCurrentTime = NEHorizontalSlider->value();
2801 //------------------------------------------------------------------------------
2804 //------------------------------------------------------------------------------
2805 void vvMainWindow::SOHorizontalSliderMoved()
2807 // if (mCurrentTime == SOHorizontalSlider->value()) return;
2808 HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
2809 // mCurrentTime = SOHorizontalSlider->value();
2811 //------------------------------------------------------------------------------
2814 //------------------------------------------------------------------------------
2815 void vvMainWindow::SEHorizontalSliderMoved()
2817 // if (mCurrentTime == SEHorizontalSlider->value()) return;
2818 HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
2819 // mCurrentTime = SEHorizontalSlider->value();
2821 //------------------------------------------------------------------------------
2823 //------------------------------------------------------------------------------
2824 void vvMainWindow::NOVerticalSliderChanged()
2826 static int value=-1;
2827 if (value == NOVerticalSlider->value()) return;
2828 else value = NOVerticalSlider->value();
2829 // int value = NOVerticalSlider->value();
2830 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2831 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2832 if (mSlicerManagers[i]->GetSlicer(0)->GetSlice() != value) {
2833 mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
2834 mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
2836 // If nor Update/Render -> slider not work
2837 // only render = ok navigation, but for contour Update needed but slower ?
2839 mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
2840 //mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2846 //------------------------------------------------------------------------------
2849 //------------------------------------------------------------------------------
2850 void vvMainWindow::NEVerticalSliderChanged()
2852 static int value=-1;
2853 if (value == NEVerticalSlider->value()) return;
2854 else value = NEVerticalSlider->value();
2855 // int value = NEVerticalSlider->value();
2856 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2857 if (DataTree->topLevelItem(i)->data(COLUMN_UR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2858 if (mSlicerManagers[i]->GetSlicer(1)->GetSlice() != value) {
2859 mSlicerManagers[i]->GetSlicer(1)->SetSlice(value);
2860 mSlicerManagers[i]->VerticalSliderHasChanged(1, value);
2861 mSlicerManagers[i]->UpdateSlice(1);
2862 //mSlicerManagers[i]->GetSlicer(1)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2868 //------------------------------------------------------------------------------
2871 //------------------------------------------------------------------------------
2872 void vvMainWindow::SOVerticalSliderChanged()
2874 static int value=-1;
2875 if (value == SOVerticalSlider->value()) return;
2876 else value = SOVerticalSlider->value();
2877 //int value = SOVerticalSlider->value();
2878 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2879 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2880 if (mSlicerManagers[i]->GetSlicer(2)->GetSlice() != value) {
2881 mSlicerManagers[i]->GetSlicer(2)->SetSlice(value);
2882 mSlicerManagers[i]->VerticalSliderHasChanged(2, value);
2883 mSlicerManagers[i]->UpdateSlice(2);
2884 //mSlicerManagers[i]->GetSlicer(2)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2886 // else { DD("avoid SOVerticalSlider slicer update"); }
2891 //------------------------------------------------------------------------------
2894 //------------------------------------------------------------------------------
2895 void vvMainWindow::SEVerticalSliderChanged()
2897 static int value=-1;
2898 if (value == SEVerticalSlider->value()) return;
2899 else value = SEVerticalSlider->value();
2900 // int value = SEVerticalSlider->value();
2901 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2902 if (DataTree->topLevelItem(i)->data(COLUMN_DR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2903 if (mSlicerManagers[i]->GetSlicer(3)->GetSlice() != value) {
2904 mSlicerManagers[i]->GetSlicer(3)->SetSlice(value);
2905 mSlicerManagers[i]->VerticalSliderHasChanged(3, value);
2906 mSlicerManagers[i]->UpdateSlice(3);
2907 //mSlicerManagers[i]->GetSlicer(3)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2913 //------------------------------------------------------------------------------
2916 //------------------------------------------------------------------------------
2917 void vvMainWindow::UpdateSlice(int slicer, int slice)
2919 // DD("vvMainWindow::UpdateSlice");
2923 // if (slice != NOVerticalSlider->value())
2924 NOVerticalSlider->setValue(slice);
2927 NEVerticalSlider->setValue(slice);
2930 SOVerticalSlider->setValue(slice);
2933 SEVerticalSlider->setValue(slice);
2937 // DD("vvMainWindow:UpdateSlice END");
2939 //------------------------------------------------------------------------------
2942 //------------------------------------------------------------------------------
2943 void vvMainWindow::UpdateTSlice(int slicer, int slice)
2947 NOHorizontalSlider->setValue(slice);
2950 NEHorizontalSlider->setValue(slice);
2953 SOHorizontalSlider->setValue(slice);
2956 SEHorizontalSlider->setValue(slice);
2960 //------------------------------------------------------------------------------
2963 //------------------------------------------------------------------------------
2964 void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax)
2966 //int position = int((min+max)/2);
2967 int position = mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(slicer)->GetSlice();
2969 NOVerticalSlider->setRange(min,max);
2970 NOHorizontalSlider->setRange(tmin,tmax);
2971 NOVerticalSlider->setValue(position);
2972 } else if (slicer == 1) {
2973 NEVerticalSlider->setRange(min,max);
2974 NEHorizontalSlider->setRange(tmin,tmax);
2975 NEVerticalSlider->setValue(position);
2976 } else if (slicer == 2) {
2977 SOVerticalSlider->setRange(min,max);
2978 SOHorizontalSlider->setRange(tmin,tmax);
2979 SOVerticalSlider->setValue(position);
2980 } else if (slicer == 3) {
2981 SEVerticalSlider->setRange(min,max);
2982 SEHorizontalSlider->setRange(tmin,tmax);
2983 SEVerticalSlider->setValue(position);
2986 //------------------------------------------------------------------------------
2989 //------------------------------------------------------------------------------
2990 void vvMainWindow::SaveNOScreenshot()
2992 SaveScreenshot(NOViewWidget);
2994 //------------------------------------------------------------------------------
2997 //------------------------------------------------------------------------------
2998 void vvMainWindow::SaveNEScreenshot()
3000 SaveScreenshot(NEViewWidget);
3002 //------------------------------------------------------------------------------
3005 //------------------------------------------------------------------------------
3006 void vvMainWindow::SaveSOScreenshot()
3008 SaveScreenshot(SOViewWidget);
3010 //------------------------------------------------------------------------------
3013 //------------------------------------------------------------------------------
3014 void vvMainWindow::SaveSEScreenshot()
3016 SaveScreenshot(SEViewWidget);
3018 //------------------------------------------------------------------------------
3021 //------------------------------------------------------------------------------
3022 void vvMainWindow::SaveScreenshotAllSlices()
3024 QVTKWidget *widget = NOViewWidget;
3026 int index = 0;// GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
3027 vvSlicerManager * SM = mSlicerManagers[index];
3028 vvImage * image = SM->GetImage();
3029 vvSlicer * slicer = SM->GetSlicer(0);
3030 int orientation = slicer->GetOrientation();
3031 int nbSlices = image->GetSize()[orientation];
3032 vtkSmartPointer<vtkRenderWindow> renderWindow = widget->GetRenderWindow();
3034 // Select filename base
3035 QString filename = QFileDialog::getSaveFileName(this,
3036 tr("Save As (filename will be completed by slice number)"),
3037 itksys::SystemTools::GetFilenamePath(mSlicerManagers[index]->GetFileName()).c_str(),
3038 "Images( *.png);;Images( *.jpg)");
3041 for(int i=0; i<nbSlices; i++) {
3043 slicer->SetSlice(i); // -> change the slice of the current slicer
3044 SM->UpdateSlice(0); // --> this one emit UpdateSlice
3045 QCoreApplication::flush(); // -> needed to force display of contours
3048 vtkSmartPointer<vtkWindowToImageFilter> windowToImageFilter = vtkSmartPointer<vtkWindowToImageFilter>::New();
3049 windowToImageFilter->SetInput(renderWindow);
3050 windowToImageFilter->SetMagnification(1);
3051 windowToImageFilter->SetInputBufferTypeToRGBA(); //also record the alpha (transparency) channel
3052 windowToImageFilter->Update();
3054 vtkSmartPointer<vtkPNGWriter> writer = vtkSmartPointer<vtkPNGWriter>::New();
3055 std::string fn = itksys::SystemTools::GetFilenameWithoutLastExtension(filename.toStdString());
3056 std::string num = clitk::toString(i);
3057 if (i<10) num = "0"+num;
3058 if (i<100) num = "0"+num;
3059 if (i<1000) num = "0"+num;
3061 fn = itksys::SystemTools::GetFilenamePath(filename.toStdString()) + "/"+ fn
3062 + "_" + num + itksys::SystemTools::GetFilenameLastExtension(filename.toStdString());
3063 writer->SetFileName(fn.c_str());
3064 writer->SetInput(windowToImageFilter->GetOutput());
3068 //------------------------------------------------------------------------------
3071 //------------------------------------------------------------------------------
3072 void vvMainWindow::SaveScreenshot(QVTKWidget *widget)
3074 QString Extensions = "Images( *.png);;";
3075 Extensions += "Images( *.jpg);;";
3076 Extensions += "Images( *.bmp);;";
3077 Extensions += "Images( *.tif);;";
3078 Extensions += "Images( *.ppm)";
3079 #if defined(VTK_USE_FFMPEG_ENCODER) || defined(VTK_USE_VIDEO_FOR_WINDOWS)
3080 Extensions += ";;Video( *.avi)";
3082 #ifdef VTK_USE_MPEG2_ENCODER
3083 Extensions += ";;Video( *.mpg)";
3085 #ifdef CLITK_EXPERIMENTAL
3086 Extensions += ";;Video( *.gif)";
3089 int smIndex=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
3090 QString fileName = QFileDialog::getSaveFileName(this,
3092 itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(),
3095 if (!fileName.isEmpty()) {
3096 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
3097 w2i->SetInput(widget->GetRenderWindow());
3099 vtkImageData *image = w2i->GetOutput();
3101 std::string ext(itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString()));
3104 vtkImageWriter *imgwriter = NULL;
3106 imgwriter = vtkBMPWriter::New();
3107 else if (ext==".tif")
3108 imgwriter = vtkTIFFWriter::New();
3109 else if (ext==".ppm")
3110 imgwriter = vtkPNMWriter::New();
3111 else if (ext==".png")
3112 imgwriter = vtkPNGWriter::New();
3113 else if (ext==".jpg")
3114 imgwriter = vtkJPEGWriter::New();
3116 // Snapshot image if not null
3117 if(imgwriter!=NULL) {
3118 imgwriter->SetInput(image);
3119 imgwriter->SetFileName(fileName.toStdString().c_str());
3125 vtkGenericMovieWriter *vidwriter = NULL;
3126 #if CLITK_EXPERIMENTAL == 1
3128 vvAnimatedGIFWriter *gif = vvAnimatedGIFWriter::New();
3133 int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
3134 tr("FPS:"), 5, 0, 1000, 1, &ok);
3139 int loops = QInputDialog::getInteger(this, tr("Loops"),
3140 tr("Number of loops (0 means infinite):"), 0, 0, 1000000000, 1, &ok);
3142 gif->SetLoops(loops);
3145 QString msg = "Would you like to activate dithering?";
3146 QMessageBox msgBox(QMessageBox::Question, tr("Dithering"),msg, 0, this);
3147 msgBox.addButton(tr("Yes"), QMessageBox::AcceptRole);
3148 msgBox.addButton(tr("No"), QMessageBox::RejectRole);
3149 gif->SetDither(msgBox.exec() == QMessageBox::AcceptRole);
3152 #ifdef VTK_USE_VIDEO_FOR_WINDOWS
3154 vtkAVIWriter *mpg = vtkAVIWriter::New();
3158 int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
3159 tr("FPS:"), 5, 0, 1024, 1, &ok);
3165 #ifdef VTK_USE_FFMPEG_ENCODER
3167 vtkFFMPEGWriter *mpg = vtkFFMPEGWriter::New();
3171 int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
3172 tr("FPS:"), 5, 0, 1024, 1, &ok);
3176 mpg->SetBitRateTolerance(int(ceil(12.0*1024*1024/fps)));
3179 #ifdef VTK_USE_MPEG2_ENCODER
3181 vtkMPEG2Writer *mpg = vtkMPEG2Writer::New();
3186 // Take video if not null
3187 if(vidwriter!=NULL){
3188 vidwriter->SetInput(image);
3189 vidwriter->SetFileName(fileName.toStdString().c_str());
3191 int nSlice = mSlicerManagers[smIndex]->GetSlicer(0)->GetTMax();
3192 for(int i=0; i<=nSlice; i++) {
3193 mSlicerManagers[smIndex]->SetNextTSlice(0);
3194 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
3195 w2i->SetInput(widget->GetRenderWindow());
3197 vidwriter->SetInput(w2i->GetOutput());
3201 vidwriter->Delete();
3205 QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
3208 //------------------------------------------------------------------------------
3211 //------------------------------------------------------------------------------
3212 void vvMainWindow::GoToCursor()
3214 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
3215 for (int column = 1; column < 5; column++) {
3216 if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1) {
3217 double* cursorPos = mSlicerManagers[index]->GetSlicer(column-1)->GetCursorPosition();
3218 mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
3219 cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
3220 mSlicerManagers[index]->UpdateViews(1,column-1);
3221 mSlicerManagers[index]->UpdateLinked(column-1);
3226 //------------------------------------------------------------------------------
3228 //------------------------------------------------------------------------------
3229 void vvMainWindow::PlayPause()
3233 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_play.png")));
3237 int image_number=DataTree->topLevelItemCount();
3239 for (int i=0; i<image_number; i++)
3240 if (mSlicerManagers[i]->GetSlicer(0)->GetTMax() > 0) {
3246 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
3247 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
3251 //------------------------------------------------------------------------------
3253 //------------------------------------------------------------------------------
3254 void vvMainWindow::PlayNext()
3256 if (playMode && !this->isHidden()) {
3257 int image_number=DataTree->topLevelItemCount();
3258 ///Only play one slicer per SM, and only if the SM is being displayed
3259 for (int i=0; i<image_number; i++)
3260 for (int j=0; j<4; j++)
3261 if (mSlicerManagers[i]->GetSlicer(0)->GetTMax() > 0 &&
3262 DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
3263 mSlicerManagers[i]->SetNextTSlice(j);
3266 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
3269 //------------------------------------------------------------------------------
3271 void vvMainWindow::ShowLastImage()
3273 if (mSlicerManagers.size() > 1) {
3274 QTreeWidgetItem * item=DataTree->topLevelItem(DataTree->topLevelItemCount()-1);
3275 CurrentImageChanged(mSlicerManagers.back()->GetId()); //select new image
3276 item->setData(1,Qt::CheckStateRole,2); //show the new image in the first panel
3277 DisplayChanged(item,1);
3281 //------------------------------------------------------------------------------
3282 void vvMainWindow::UpdateRenderWindows()
3284 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
3285 mSlicerManagers[i]->GetSlicer(0)->UpdateLandmarks();
3286 mSlicerManagers[i]->GetSlicer(1)->UpdateLandmarks();
3287 mSlicerManagers[i]->GetSlicer(2)->UpdateLandmarks();
3288 mSlicerManagers[i]->GetSlicer(3)->UpdateLandmarks();
3290 if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
3291 if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
3292 if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
3293 if (SEViewWidget->GetRenderWindow()) SEViewWidget->GetRenderWindow()->Render();
3295 //------------------------------------------------------------------------------
3297 //------------------------------------------------------------------------------
3298 void vvMainWindow::SegmentationOnCurrentImage()
3300 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
3302 vvSegmentationDialog segmentation;
3303 segmentation.SetImage(mSlicerManagers[index]->GetSlicer(0)->GetImage());
3304 segmentation.exec();
3306 //------------------------------------------------------------------------------
3308 void vvMainWindow::SurfaceViewerLaunch()
3310 vvSurfaceViewerDialog surfaceViewer;
3311 surfaceViewer.exec();
3313 //------------------------------------------------------------------------------
3316 //------------------------------------------------------------------------------
3317 int vvMainWindow::GetImageDuplicateFilenameNumber(std::string filename)
3320 for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
3321 vvSlicerManager * v = mSlicerManagers[l];
3322 if (v->GetBaseFileName() ==
3323 vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
3324 number = std::max(number, v->GetBaseFileNameNumber()+1);
3329 //------------------------------------------------------------------------------
3332 //------------------------------------------------------------------------------
3333 vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
3335 // Change filename if another image exist with the same name
3336 int number = GetImageDuplicateFilenameNumber(filename);
3338 // Create new SliceManager
3339 vvSlicerManager* slicer_manager = new vvSlicerManager(4);
3340 slicer_manager->SetImage(image);//, IMAGE, number);
3341 // filename = filename+"_"+clitk::toString(number);
3342 slicer_manager->SetFilename(filename, number);
3343 mSlicerManagers.push_back(slicer_manager);
3345 //create an item in the tree with good settings
3346 QTreeWidgetItem *item = new QTreeWidgetItem();
3347 item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
3348 item->setData(1,Qt::UserRole,tr("image"));
3349 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,slicer_manager->GetFileName().c_str());//filename.c_str());
3350 qApp->processEvents();
3352 for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1);
3354 //Create the buttons for reload and close
3355 qApp->processEvents();
3356 QTreePushButton* cButton = new QTreePushButton;
3357 cButton->setItem(item);
3358 cButton->setColumn(COLUMN_CLOSE_IMAGE);
3359 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
3360 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
3361 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
3363 QTreePushButton* rButton = new QTreePushButton;
3364 rButton->setItem(item);
3365 rButton->setColumn(COLUMN_RELOAD_IMAGE);
3366 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
3367 rButton->setEnabled(0);
3368 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
3369 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
3371 DataTree->addTopLevelItem(item);
3372 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
3373 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
3375 //set the id of the image
3376 QString id = QDir::current().absoluteFilePath(slicer_manager->GetFileName().c_str()) + QString::number(mSlicerManagers.size()-1);
3377 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
3378 mSlicerManagers.back()->SetId(id.toStdString());
3380 linkPanel->addImage(slicer_manager->GetFileName().c_str()// filename
3381 , id.toStdString());
3383 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
3384 this, SLOT(CurrentImageChanged(std::string)));
3385 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
3386 this, SLOT(CurrentPickedImageChanged(std::string)));
3387 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
3388 this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
3389 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
3390 this, SLOT(VectorChanged(int,double,double,double, double)));
3391 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
3392 this, SLOT(OverlayChanged(int,double,double)));
3393 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
3394 this, SLOT(FusionChanged(int,double)));
3395 //connect(mSlicerManagers.back(), SIGNAL(UpdateFusionSequence(int, bool, unsigned int)),
3396 // this, SLOT(FusionSequenceChanged(int, bool, unsigned int)));
3397 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
3398 this,SLOT(WindowLevelChanged()));
3399 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
3400 this,SLOT(UpdateSlice(int,int)));
3401 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
3402 this,SLOT(UpdateTSlice(int, int)));
3403 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
3404 this,SLOT(ImageInfoChanged()));
3405 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
3406 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
3407 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
3408 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
3409 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
3410 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
3411 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
3412 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
3413 connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
3415 qApp->processEvents();
3419 qApp->processEvents();
3423 return slicer_manager;
3425 //------------------------------------------------------------------------------
3428 //------------------------------------------------------------------------------
3429 void vvMainWindow::UpdateCurrentSlicer()
3432 if (DataTree->selectedItems().size() > 0) {
3433 index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
3435 mSlicerManagerCurrentIndex = index;
3437 //------------------------------------------------------------------------------