1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ======================================================================-====*/
19 #include "vvSlicerManager.h"
22 #include "vvSlicerManagerCommand.h"
23 #include "vvInteractorStyleNavigator.h"
24 #include "vvLandmarks.h"
26 #include "vvImageMapToWLColors.h"
27 #include "vvBlendImageActor.h"
29 #include <vtkImageActor.h>
30 #include <vtkImageData.h>
31 #include <vtkRenderWindow.h>
32 #include <vtkRendererCollection.h>
33 #include <vtkRenderWindowInteractor.h>
34 #include <vtkImageMapToWindowLevelColors.h>
35 #include <vtkWindowLevelLookupTable.h>
36 #include <vtkColorTransferFunction.h>
37 #include <vtkImageClip.h>
38 #include <vtkLODActor.h>
39 #include <vtkPointData.h>
40 #include <vtksys/SystemTools.hxx>
41 #include <vtkCamera.h>
43 #include <qfileinfo.h>
45 //----------------------------------------------------------------------------
46 vvSlicerManager::vvSlicerManager(int numberOfSlicers)
55 mType = vvImageReader::UNDEFINEDIMAGETYPE;
61 mFusionThresOpacity = 1;
65 mFusionShowLegend = true;
70 for ( int i = 0; i < numberOfSlicers; i++)
71 mSlicers.push_back(vtkSmartPointer<vvSlicer>::New());
73 mPreviousSlice.resize(numberOfSlicers);
74 mPreviousTSlice.resize(numberOfSlicers);
75 mSlicingPreset = WORLD_SLICING;
77 //----------------------------------------------------------------------------
80 //----------------------------------------------------------------------------
81 vvSlicerManager::~vvSlicerManager()
86 //----------------------------------------------------------------------------
89 //------------------------------------------------------------------------------
90 void vvSlicerManager::SetFilename(std::string filename, int number)
93 mFileName = vtksys::SystemTools::GetFilenameName(mFileName);
94 mBaseFileName = vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(mFileName));
95 mBaseFileNameNumber = number;
97 mFileName = mBaseFileName;
99 mFileName.append("_"+clitk::toString(number));
101 mFileName.append(vtksys::SystemTools::GetFilenameLastExtension(filename));
103 for(unsigned int i=0; i<mSlicers.size(); i++) {
104 mSlicers[i]->SetFileName(mFileName);//vtksys::SystemTools::GetFilenameWithoutLastExtension(filename));
108 //------------------------------------------------------------------------------
111 //----------------------------------------------------------------------------
112 void vvSlicerManager::AddContour(vvMesh::Pointer contour,bool propagate)
114 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
115 mSlicers[i]->AddContour(contour,propagate);
118 //----------------------------------------------------------------------------
121 //----------------------------------------------------------------------------
122 void vvSlicerManager::ToggleContourSuperposition()
124 for ( unsigned int i = 0; i < mSlicers.size(); i++)
125 mSlicers[i]->ToggleContourSuperposition();
127 //----------------------------------------------------------------------------
129 //----------------------------------------------------------------------------
130 std::string vvSlicerManager::GetListOfAbsoluteFilePathInOneString(const std::string &actorType)
132 vvImageReader *reader = NULL;
134 if(actorType=="image")
136 else if(actorType=="overlay")
137 reader = mOverlayReader;
138 else if(actorType=="fusion")
139 reader = mFusionReader;
140 else if(actorType=="vector")
141 reader = mVectorReader;
147 for(unsigned int i=0; i<reader->GetInputFilenames().size(); i++){
148 QFileInfo fileinfo(reader->GetInputFilenames()[i].c_str()); //Do not show the path
151 list += fileinfo.absoluteFilePath().toStdString();
155 //----------------------------------------------------------------------------
158 //----------------------------------------------------------------------------
159 bool vvSlicerManager::SetImage(std::string filename, vvImageReader::LoadedImageType type, int n, unsigned int slice)
162 if (mReader.IsNull())
163 mReader = vvImageReader::New();
164 std::vector<std::string> filenames;
165 filenames.push_back(filename);
166 mReader->SetInputFilenames(filenames);
167 mReader->SetSlice(slice); // Only used for SLICED type
168 mReader->Update(type);
170 SetFilename(filename, n);
171 // mFileName = vtksys::SystemTools::GetFilenameName(mFileName);
172 //mBaseFileName = vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(mFileName));
173 //mBaseFileNameNumber = n;
175 if (mReader->GetLastError().size() == 0) {
176 mImage=mReader->GetOutput();
177 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
178 mSlicers[i]->SetFileName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename));
179 mSlicers[i]->SetImage(mReader->GetOutput());
182 mLastError = mReader->GetLastError();
186 // mFileName.append("_"+clitk::toString(n));
190 //----------------------------------------------------------------------------
193 //----------------------------------------------------------------------------
194 void vvSlicerManager::SetImage(vvImage::Pointer image)
197 for (unsigned int i = 0; i < mSlicers.size(); i++) {
198 mSlicers[i]->SetImage(image);
201 //----------------------------------------------------------------------------
204 //----------------------------------------------------------------------------
205 bool vvSlicerManager::SetImages(std::vector<std::string> filenames, vvImageReader::LoadedImageType type, int n)
208 std::string fileWithoutExtension = vtksys::SystemTools::GetFilenameWithoutExtension(filenames[0]);
209 if (type == vvImageReader::DICOM)
210 fileWithoutExtension += "_dicom";
211 else if (type == vvImageReader::MERGED)
212 fileWithoutExtension += "_merged";
213 else if (type == vvImageReader::MERGEDWITHTIME)
214 fileWithoutExtension += "_merged_wt";
216 mFileName = vtksys::SystemTools::GetFilenameName(mFileName);
217 mFileName = fileWithoutExtension + vtksys::SystemTools::GetFilenameExtension(filenames[0]);
218 if (mReader.IsNull())
219 mReader = vvImageReader::New();
220 mReader->SetInputFilenames(filenames);
221 mReader->Update(type);
223 mBaseFileName = vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(mFileName));
224 mBaseFileNameNumber = n;
226 if (mReader->GetLastError().size() == 0) {
227 mImage=mReader->GetOutput();
228 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
229 mSlicers[i]->SetFileName(fileWithoutExtension);
230 mSlicers[i]->SetImage(mReader->GetOutput());
233 mLastError = mReader->GetLastError();
237 mFileName.append("_"+clitk::toString(n));
241 //----------------------------------------------------------------------------
244 //----------------------------------------------------------------------------
245 bool vvSlicerManager::SetOverlay(std::string filename,int dim, std::string component)
247 mOverlayName = filename;
248 mOverlayComponent = component;
249 if (dim > mImage->GetNumberOfDimensions()) {
250 mLastError = " Overlay dimension cannot be greater then reference image!";
253 if (mOverlayReader.IsNull())
254 mOverlayReader = vvImageReader::New();
255 std::vector<std::string> filenames;
256 filenames.push_back(filename);
257 mOverlayReader->SetInputFilenames(filenames);
258 mOverlayReader->Update(mImage->GetNumberOfDimensions(),component.c_str(),mType);
259 if (mOverlayReader->GetLastError().size() == 0) {
260 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
261 mSlicers[i]->SetOverlay(mOverlayReader->GetOutput());
264 mLastError = mOverlayReader->GetLastError();
269 //----------------------------------------------------------------------------
272 //----------------------------------------------------------------------------
273 bool vvSlicerManager::SetFusion(std::string filename,int dim, std::string component)
275 mFusionName = filename;
276 mFusionComponent = component;
277 if (dim > mImage->GetNumberOfDimensions()) {
278 mLastError = " Overlay dimension cannot be greater then reference image!";
281 if (mFusionReader.IsNull())
282 mFusionReader = vvImageReader::New();
283 std::vector<std::string> filenames;
284 filenames.push_back(filename);
285 mFusionReader->SetInputFilenames(filenames);
286 mFusionReader->Update(mImage->GetNumberOfDimensions(),component.c_str(),mType);
287 if (mFusionReader->GetLastError().size() == 0) {
288 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
289 mSlicers[i]->SetFusion(mFusionReader->GetOutput());
292 mLastError = mFusionReader->GetLastError();
295 double *fusRange = mFusionReader->GetOutput()->GetVTKImages()[0]->GetScalarRange();
296 mFusionLevel = (fusRange[0]+fusRange[1])/2;
297 mFusionWindow = fusRange[1]-fusRange[0];
301 //----------------------------------------------------------------------------
304 //----------------------------------------------------------------------------
305 bool vvSlicerManager::SetVF(std::string filename)
307 if (mVectorReader.IsNull())
308 mVectorReader = vvImageReader::New();
309 mVectorReader->SetInputFilename(filename);
311 if (mType == vvImageReader::IMAGEWITHTIME)
312 mVectorReader->Update(vvImageReader::VECTORFIELDWITHTIME);
314 mVectorReader->Update(vvImageReader::VECTORFIELD);
315 if (mVectorReader->GetLastError().size() != 0) {
316 mLastError = mVectorReader->GetLastError();
319 return SetVF(mVectorReader->GetOutput(),filename);
321 //----------------------------------------------------------------------------
324 //----------------------------------------------------------------------------
325 bool vvSlicerManager::SetVF(vvImage::Pointer vf,std::string filename)
327 if (vf->GetNumberOfDimensions() > mImage->GetNumberOfDimensions()) {
328 mLastError = "Sorry, vector field dimension cannot be greater then reference image.";
331 if (vf->GetNumberOfDimensions() == 4) {
332 if (vf->GetSpacing()[3] != mImage->GetSpacing()[3]) {
333 mLastError = "Sorry, vector field time spacing cannot be different from time spacing of the reference image.";
336 if (vf->GetOrigin()[3] != mImage->GetOrigin()[3]) {
337 mLastError = "Sorry, vector field time origin cannot be different from time origin of the reference image.";
343 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
344 mSlicers[i]->SetVF(vf);
348 //----------------------------------------------------------------------------
351 //----------------------------------------------------------------------------
352 vvSlicer* vvSlicerManager::GetSlicer(int i)
356 //----------------------------------------------------------------------------
359 //----------------------------------------------------------------------------
360 void vvSlicerManager::UpdateSlicer(int num, bool state)
362 if (mSlicers[num]->GetImage())
363 mSlicers[num]->SetDisplayMode(state);
365 //----------------------------------------------------------------------------
368 //----------------------------------------------------------------------------
369 void vvSlicerManager::SetSlicerWindow(int i, vtkRenderWindow* RW)
371 mSlicers[i]->SetRenderWindow(i,RW);
373 //----------------------------------------------------------------------------
376 //----------------------------------------------------------------------------
377 void vvSlicerManager::SetInteractorStyleNavigator(int i, vtkInteractorStyle* style)
379 vvSlicerManagerCommand *smc = vvSlicerManagerCommand::New();
381 smc->SetSlicerNumber(i);
382 mSlicers[i]->GetRenderWindow()->GetInteractor()->SetInteractorStyle(style);
384 mSlicers[i]->GetRenderWindow()->GetInteractor()->
385 GetInteractorStyle()->AddObserver(vtkCommand::KeyPressEvent, smc);
386 mSlicers[i]->GetRenderWindow()->GetInteractor()->
387 GetInteractorStyle()->AddObserver(vtkCommand::WindowLevelEvent, smc);
388 mSlicers[i]->GetRenderWindow()->GetInteractor()->
389 GetInteractorStyle()->AddObserver(vtkCommand::EndWindowLevelEvent, smc);
390 mSlicers[i]->GetRenderWindow()->GetInteractor()->
391 GetInteractorStyle()->AddObserver(vtkCommand::StartWindowLevelEvent, smc);
392 mSlicers[i]->GetRenderWindow()->GetInteractor()->
393 GetInteractorStyle()->AddObserver(vtkCommand::PickEvent, smc);
394 mSlicers[i]->GetRenderWindow()->GetInteractor()->
395 GetInteractorStyle()->AddObserver(vtkCommand::StartPickEvent, smc);
396 mSlicers[i]->GetRenderWindow()->GetInteractor()->
397 GetInteractorStyle()->AddObserver(vtkCommand::LeaveEvent, smc);
398 mSlicers[i]->GetRenderWindow()->GetInteractor()->
399 GetInteractorStyle()->AddObserver(vtkCommand::UserEvent, smc);
400 mSlicers[i]->GetRenderWindow()->GetInteractor()->
401 GetInteractorStyle()->AddObserver(vtkCommand::MouseWheelForwardEvent, smc);
402 mSlicers[i]->GetRenderWindow()->GetInteractor()->
403 GetInteractorStyle()->AddObserver(vtkCommand::MouseWheelBackwardEvent, smc);
404 // mSlicers[i]->GetRenderWindow()->GetInteractor()->
405 // GetInteractorStyle()->AddObserver(vtkCommand::LeftButtonReleaseEvent, smc);
406 mSlicers[i]->GetRenderWindow()->GetInteractor()->
407 GetInteractorStyle()->AddObserver(vtkCommand::EndPickEvent, smc);
408 mSlicers[i]->GetRenderWindow()->GetInteractor()->
409 GetInteractorStyle()->AddObserver(vtkCommand::EndInteractionEvent, smc);
412 //----------------------------------------------------------------------------
415 //----------------------------------------------------------------------------
416 void vvSlicerManager::LeftButtonReleaseEvent(int slicer)
418 emit LeftButtonReleaseSignal(slicer);
420 //----------------------------------------------------------------------------
422 //----------------------------------------------------------------------------
423 void vvSlicerManager::SetSliceOrientation(int slicer, int orientation)
425 mSlicers[slicer]->SetSliceOrientation(orientation);
426 emit UpdateOrientation(slicer, orientation);
428 //----------------------------------------------------------------------------
430 //----------------------------------------------------------------------------
431 int vvSlicerManager::GetTSlice()
433 return mSlicers[0]->GetTSlice();
435 //----------------------------------------------------------------------------
437 //----------------------------------------------------------------------------
438 void vvSlicerManager::SetTSlice(int slice)
442 else if (slice > mSlicers[0]->GetTMax())
443 slice = mSlicers[0]->GetTMax();
445 mLandmarks->SetTime(slice);
446 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
447 if (slice != mSlicers[i]->GetTSlice()) {
448 mSlicers[i]->SetTSlice(slice);
453 //----------------------------------------------------------------------------
456 //----------------------------------------------------------------------------
457 void vvSlicerManager::SetNextTSlice(int originating_slicer)
459 int t = mSlicers[0]->GetTSlice();
461 if (t > mSlicers[0]->GetTMax())
463 //std::cout << "vvSlicerManager::SetNextTSlice" << std::endl;
464 emit UpdateTSlice(originating_slicer,t);
466 //----------------------------------------------------------------------------
469 //----------------------------------------------------------------------------
470 void vvSlicerManager::SetPreviousTSlice(int originating_slicer)
472 int t = mSlicers[0]->GetTSlice();
475 t = mSlicers[0]->GetTMax();
476 //std::cout << "vvSlicerManager::SetPreviousTSlice" << std::endl;
477 emit UpdateTSlice(originating_slicer,t);
479 //----------------------------------------------------------------------------
482 //----------------------------------------------------------------------------
483 void vvSlicerManager::ToggleInterpolation()
485 bool interpolate=!(mSlicers[0]->GetImageActor()->GetInterpolate());
486 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
487 mSlicers[i]->GetImageActor()->SetInterpolate(interpolate);
488 if (mSlicers[i]->GetOverlayActor())
489 mSlicers[i]->GetOverlayActor()->SetInterpolate(interpolate);
490 if (mSlicers[i]->GetFusionActor())
491 mSlicers[i]->GetFusionActor()->SetInterpolate(interpolate);
494 //----------------------------------------------------------------------------
497 //----------------------------------------------------------------------------
498 void vvSlicerManager::SetTSliceInSlicer(int tslice, int slicer)
502 else if (tslice > mSlicers[slicer]->GetTMax())
503 tslice = mSlicers[slicer]->GetTMax();
505 mLandmarks->SetTime(tslice);
507 if (mSlicers[slicer]->GetTSlice() == tslice) return;
509 if(mSlicingPreset==VOXELS_SLICING) {
510 vtkMatrix4x4 *imageTransformInverse = vtkMatrix4x4::New();
511 mImage->GetTransform()[tslice]->GetInverse(imageTransformInverse);
512 this->GetSlicer(slicer)->GetSlicingTransform()->SetMatrix(imageTransformInverse);
513 imageTransformInverse->Delete();
516 mSlicers[slicer]->SetTSlice(tslice);
517 UpdateTSlice(slicer);
519 //----------------------------------------------------------------------------
522 //----------------------------------------------------------------------------
523 void vvSlicerManager::SetColorWindow(double s)
525 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
526 mSlicers[i]->SetColorWindow(s);
529 //----------------------------------------------------------------------------
531 //----------------------------------------------------------------------------
532 void vvSlicerManager::SetColorLevel(double s)
534 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
535 mSlicers[i]->SetColorLevel(s);
538 //----------------------------------------------------------------------------
540 //----------------------------------------------------------------------------
541 void vvSlicerManager::SetOverlayColorWindow(double s)
543 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
544 mSlicers[i]->SetOverlayColorWindow(s);
547 //----------------------------------------------------------------------------
549 //----------------------------------------------------------------------------
550 void vvSlicerManager::SetOverlayColorLevel(double s)
552 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
553 mSlicers[i]->SetOverlayColorLevel(s);
556 //----------------------------------------------------------------------------
558 //----------------------------------------------------------------------------
559 void vvSlicerManager::SetLinkOverlayWindowLevel(bool b)
561 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
562 mSlicers[i]->SetLinkOverlayWindowLevel(b);
565 //----------------------------------------------------------------------------
567 //----------------------------------------------------------------------------
568 void vvSlicerManager::SetCursorAndCornerAnnotationVisibility(int s)
570 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
571 mSlicers[i]->SetCursorVisibility(s);
572 mSlicers[i]->SetCornerAnnotationVisibility(s);
575 //----------------------------------------------------------------------------
577 //----------------------------------------------------------------------------
578 void vvSlicerManager::SetOpacity(int i, double factor)
580 mSlicers[i]->SetOpacity(1/factor);
582 //----------------------------------------------------------------------------
585 //----------------------------------------------------------------------------
586 void vvSlicerManager::UpdateViews(int current,int slicer)
589 p[0] = mSlicers[slicer]->GetCurrentPosition()[0];
590 p[1] = mSlicers[slicer]->GetCurrentPosition()[1];
591 p[2] = mSlicers[slicer]->GetCurrentPosition()[2];
592 mSlicers[slicer]->GetSlicingTransform()->GetInverse()->TransformPoint(p, pt);
594 double x = (pt[0] - mSlicers[slicer]->GetInput()->GetOrigin()[0])
595 /mSlicers[slicer]->GetInput()->GetSpacing()[0];
596 double y = (pt[1] - mSlicers[slicer]->GetInput()->GetOrigin()[1])
597 /mSlicers[slicer]->GetInput()->GetSpacing()[1];
598 double z = (pt[2] - mSlicers[slicer]->GetInput()->GetOrigin()[2])
599 /mSlicers[slicer]->GetInput()->GetSpacing()[2];
601 if (x >= mSlicers[slicer]->GetInput()->GetWholeExtent()[0]-0.5 &&
602 x <= mSlicers[slicer]->GetInput()->GetWholeExtent()[1]+0.5 &&
603 y >= mSlicers[slicer]->GetInput()->GetWholeExtent()[2]-0.5 &&
604 y <= mSlicers[slicer]->GetInput()->GetWholeExtent()[3]+0.5 &&
605 z >= mSlicers[slicer]->GetInput()->GetWholeExtent()[4]-0.5 &&
606 z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5]+0.5) {
607 mSlicers[slicer]->UpdateCursorPosition();
608 mSlicers[slicer]->SetCursorColor(10,212,255);
610 switch (mSlicers[slicer]->GetSliceOrientation()) {
611 case vtkImageViewer2::SLICE_ORIENTATION_XY:
612 if (mSlicers[slicer]->GetSlice() != (int)lrint(z))
613 mSlicers[slicer]->SetSlice((int)lrint(z));
616 case vtkImageViewer2::SLICE_ORIENTATION_XZ:
617 if (mSlicers[slicer]->GetSlice() != (int)lrint(y))
618 mSlicers[slicer]->SetSlice((int)lrint(y));
621 case vtkImageViewer2::SLICE_ORIENTATION_YZ:
622 if (mSlicers[slicer]->GetSlice() != (int)lrint(x))
623 mSlicers[slicer]->SetSlice((int)lrint(x));
626 mSlicers[slicer]->Render();
628 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
629 if (i != (unsigned int)slicer
630 && mSlicers[i]->GetRenderer()->GetDraw()
631 && mSlicers[i]->GetRenderWindow()->GetSize()[0] > 2
632 && mSlicers[i]->GetRenderWindow()->GetSize()[1] > 2) {
633 mSlicers[i]->SetCurrentPosition(p[0], p[1], p[2], mSlicers[slicer]->GetTSlice());
634 mSlicers[i]->UpdateCursorPosition();
635 if (current) { //do not display corner annotation if image is the one picked
636 mSlicers[i]->SetCurrentPosition(-VTK_DOUBLE_MAX,-VTK_DOUBLE_MAX,
637 -VTK_DOUBLE_MAX, mSlicers[slicer]->GetTSlice());
638 mSlicers[i]->SetCursorColor(255,10,212);
640 mSlicers[i]->SetCursorColor(150,10,282);
642 switch (mSlicers[i]->GetSliceOrientation()) {
643 case vtkImageViewer2::SLICE_ORIENTATION_XY:
644 if (mSlicers[i]->GetSlice() != (int)floor(z))
645 mSlicers[i]->SetSlice((int)floor(z));
648 case vtkImageViewer2::SLICE_ORIENTATION_XZ:
649 if (mSlicers[i]->GetSlice() != (int)floor(y))
650 mSlicers[i]->SetSlice((int)floor(y));
653 case vtkImageViewer2::SLICE_ORIENTATION_YZ:
654 if (mSlicers[i]->GetSlice() != (int)floor(x))
655 mSlicers[i]->SetSlice((int)floor(x));
659 mSlicers[i]->Render();
667 //----------------------------------------------------------------------------
670 //----------------------------------------------------------------------------
671 void vvSlicerManager::UpdateLinked(int slicer)
674 p[0] = mSlicers[slicer]->GetCurrentPosition()[0];
675 p[1] = mSlicers[slicer]->GetCurrentPosition()[1];
676 p[2] = mSlicers[slicer]->GetCurrentPosition()[2];
677 mSlicers[slicer]->GetSlicingTransform()->GetInverse()->TransformPoint(p, pt);
678 double x = (pt[0] - mSlicers[slicer]->GetInput()->GetOrigin()[0]) / mSlicers[slicer]->GetInput()->GetSpacing()[0];
679 double y = (pt[1] - mSlicers[slicer]->GetInput()->GetOrigin()[1]) / mSlicers[slicer]->GetInput()->GetSpacing()[1];
680 double z = (pt[2] - mSlicers[slicer]->GetInput()->GetOrigin()[2]) / mSlicers[slicer]->GetInput()->GetSpacing()[2];
682 if (x >= mSlicers[slicer]->GetInput()->GetWholeExtent()[0]-0.5 &&
683 x <= mSlicers[slicer]->GetInput()->GetWholeExtent()[1]+0.5 &&
684 y >= mSlicers[slicer]->GetInput()->GetWholeExtent()[2]-0.5 &&
685 y <= mSlicers[slicer]->GetInput()->GetWholeExtent()[3]+0.5 &&
686 z >= mSlicers[slicer]->GetInput()->GetWholeExtent()[4]-0.5 &&
687 z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5]+0.5) {
688 for (std::list<std::string>::const_iterator i = mLinkedId.begin(); i != mLinkedId.end(); i++) {
689 emit UpdateLinkManager(*i, slicer, p[0], p[1], p[2], mSlicers[slicer]->GetTSlice());
693 //----------------------------------------------------------------------------
695 //----------------------------------------------------------------------------
696 void vvSlicerManager::UpdateLinkedNavigation(vvSlicer *refSlicer, bool bPropagate)
698 vtkCamera *refCam = refSlicer->GetRenderer()->GetActiveCamera();
700 double refPosition[3];
701 refCam->GetPosition(refPosition);
702 refPosition[refSlicer->GetSliceOrientation()] = refSlicer->GetSlice() *
703 refSlicer->GetInput()->GetSpacing()[refSlicer->GetSliceOrientation()] +
704 refSlicer->GetInput()->GetOrigin()[refSlicer->GetSliceOrientation()];
706 refSlicer->GetSlicingTransform()->TransformPoint(refPosition, refPosition);
707 mSlicers[0]->GetSlicingTransform()->GetInverse()->TransformPoint(refPosition, refPosition);
709 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
710 vtkCamera *camera = mSlicers[i]->GetRenderer()->GetActiveCamera();
711 camera->SetParallelScale(refCam->GetParallelScale());
713 double position[3], focal[3];
714 camera->GetPosition(position);
715 camera->GetFocalPoint(focal);
717 for(int j=0; j<3; j++) {
718 if(j!=mSlicers[i]->GetSliceOrientation()) {
719 position[j] = refPosition[j];
720 focal[j] = refPosition[j];
724 camera->SetFocalPoint(focal);
725 camera->SetPosition(position);
728 mSlicers[i]->ForceUpdateDisplayExtent();
733 for (std::list<std::string>::const_iterator i = mLinkedId.begin(); i != mLinkedId.end(); i++)
734 emit UpdateLinkedNavigation(*i, this, refSlicer);
736 //----------------------------------------------------------------------------
738 //----------------------------------------------------------------------------
739 double vvSlicerManager::GetColorWindow()
742 return mSlicers[0]->GetColorWindow();
745 //----------------------------------------------------------------------------
748 //----------------------------------------------------------------------------
749 double vvSlicerManager::GetColorLevel()
752 return mSlicers[0]->GetColorLevel();
755 //----------------------------------------------------------------------------
757 //----------------------------------------------------------------------------
758 double vvSlicerManager::GetOverlayColorWindow() const
761 return mSlicers[0]->GetOverlayColorWindow();
764 //----------------------------------------------------------------------------
766 //----------------------------------------------------------------------------
767 double vvSlicerManager::GetOverlayColorLevel() const
770 return mSlicers[0]->GetOverlayColorLevel();
773 //----------------------------------------------------------------------------
775 //----------------------------------------------------------------------------
776 bool vvSlicerManager::GetLinkOverlayWindowLevel() const
779 return mSlicers[0]->GetLinkOverlayWindowLevel();
782 //----------------------------------------------------------------------------
784 //------------------------------------------------------------------------------
785 void vvSlicerManager::ResetTransformationToIdentity(const std::string actorType)
787 if(actorType == "image")
788 for(unsigned int i=0; i<this->GetImage()->GetTransform().size(); i++)
789 this->GetImage()->GetTransform()[i]->Identity();
790 else if(actorType == "overlay")
791 for(unsigned int i=0; i<this->GetImage()->GetTransform().size(); i++)
792 this->GetSlicer(0)->GetOverlay()->GetTransform()[i]->Identity();
793 else if(actorType == "fusion")
794 for(unsigned int i=0; i<this->GetImage()->GetTransform().size(); i++)
795 this->GetSlicer(0)->GetFusion()->GetTransform()[i]->Identity();
796 else if(actorType == "vf")
797 for(unsigned int i=0; i<this->GetImage()->GetTransform().size(); i++)
798 this->GetVF()->GetTransform()[i]->Identity();
802 for(int i=0; i< this->GetNumberOfSlicers(); i++){
803 this->GetSlicer(i)->ForceUpdateDisplayExtent();
804 this->GetSlicer(i)->ResetCamera();
805 this->GetSlicer(i)->Render();
808 //------------------------------------------------------------------------------
810 //----------------------------------------------------------------------------
811 void vvSlicerManager::Render()
813 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
814 mSlicers[i]->Render();
817 //----------------------------------------------------------------------------
820 //----------------------------------------------------------------------------
821 void vvSlicerManager::GenerateDefaultLookupTable()
824 SetColorMap(mColorMap);
826 //----------------------------------------------------------------------------
829 //----------------------------------------------------------------------------
830 void vvSlicerManager::Reload()
832 mReader->Update(mType);
833 mImage=mReader->GetOutput();
834 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
835 mSlicers[i]->SetImage(mImage);
838 //----------------------------------------------------------------------------
841 //----------------------------------------------------------------------------
842 void vvSlicerManager::ReloadFusion()
844 mFusionReader->Update(mImage->GetNumberOfDimensions(),mFusionComponent.c_str(),mType);
846 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
847 mSlicers[i]->SetFusion(mFusionReader->GetOutput());
848 mSlicers[i]->Render();
851 //----------------------------------------------------------------------------
854 //----------------------------------------------------------------------------
855 void vvSlicerManager::ReloadOverlay()
857 mOverlayReader->Update(mImage->GetNumberOfDimensions(),mOverlayComponent.c_str(),mType);
858 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
859 mSlicers[i]->SetOverlay(mOverlayReader->GetOutput());
860 mSlicers[i]->Render();
863 //----------------------------------------------------------------------------
866 //----------------------------------------------------------------------------
867 void vvSlicerManager::ReloadVF()
869 mVectorReader->Update(vvImageReader::VECTORFIELD); //deletes the old images through the VF::Init() function
870 mVF=mVectorReader->GetOutput();
871 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
872 mSlicers[i]->SetVF(mVF);
873 mSlicers[i]->Render();
876 //----------------------------------------------------------------------------
879 //----------------------------------------------------------------------------
880 void vvSlicerManager::RemoveActor(const std::string& actor_type, int overlay_index)
882 if (actor_type =="overlay")
883 mOverlayReader = NULL;
885 if (actor_type =="fusion")
886 mFusionReader = NULL;
888 for (unsigned int i = 0; i < mSlicers.size(); i++)
889 mSlicers[i]->RemoveActor(actor_type,overlay_index);
891 if (actor_type=="vector") {
896 //----------------------------------------------------------------------------
899 //----------------------------------------------------------------------------
900 void vvSlicerManager::RemoveActors()
902 ///This method leaks a few objects. See RemoveActor for what a
903 ///correct implementation would look like
904 //DS -> probably due to the reader (now released in the
905 //RemoveActor() function. (I hope)
906 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
907 mSlicers[i]->SetDisplayMode(0);
908 mSlicers[i]->GetRenderer()->RemoveActor(mSlicers[i]->GetImageActor());
911 //----------------------------------------------------------------------------
914 //----------------------------------------------------------------------------
915 void vvSlicerManager::UpdateInfoOnCursorPosition(int slicer)
917 // int view = mSlicers[slicer]->GetSliceOrientation();
918 // int slice = mSlicers[slicer]->GetSlice();
919 double x = mSlicers[slicer]->GetCursorPosition()[0];
920 double y = mSlicers[slicer]->GetCursorPosition()[1];
921 double z = mSlicers[slicer]->GetCursorPosition()[2];
922 double X = (x - mSlicers[slicer]->GetInput()->GetOrigin()[0])/
923 mSlicers[slicer]->GetInput()->GetSpacing()[0];
924 double Y = (y - mSlicers[slicer]->GetInput()->GetOrigin()[1])/
925 mSlicers[slicer]->GetInput()->GetSpacing()[1];
926 double Z = (z - mSlicers[slicer]->GetInput()->GetOrigin()[2])/
927 mSlicers[slicer]->GetInput()->GetSpacing()[2];
928 double value = -VTK_DOUBLE_MAX;
930 double xVec=0, yVec=0, zVec=0, valueVec=0;
933 double valueOver=0, valueFus=0;
934 if (X >= mSlicers[slicer]->GetInput()->GetWholeExtent()[0] &&
935 X <= mSlicers[slicer]->GetInput()->GetWholeExtent()[1] &&
936 Y >= mSlicers[slicer]->GetInput()->GetWholeExtent()[2] &&
937 Y <= mSlicers[slicer]->GetInput()->GetWholeExtent()[3] &&
938 Z >= mSlicers[slicer]->GetInput()->GetWholeExtent()[4] &&
939 Z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5]) {
940 value = this->GetScalarComponentAsDouble(mSlicers[slicer]->GetInput(), X, Y, Z);
942 if (mSlicers[slicer]->GetVFActor() ) {
944 unsigned int currentTime = mSlicers[slicer]->GetTSlice();
945 vtkImageData *vf = NULL;
947 if (mSlicers[slicer]->GetVF()->GetVTKImages().size() > currentTime)
948 vf = mSlicers[slicer]->GetVF()->GetVTKImages()[currentTime];
950 vf = mSlicers[slicer]->GetVF()->GetVTKImages()[0];
953 double Xvf = (x - vf->GetOrigin()[0])/ vf->GetSpacing()[0];
954 double Yvf = (y - vf->GetOrigin()[1])/ vf->GetSpacing()[1];
955 double Zvf = (z - vf->GetOrigin()[2])/ vf->GetSpacing()[2];
956 xVec = this->GetScalarComponentAsDouble( vf, Xvf, Yvf, Zvf, 0);
957 yVec = this->GetScalarComponentAsDouble( vf, Xvf, Yvf, Zvf, 1);
958 zVec = this->GetScalarComponentAsDouble( vf, Xvf, Yvf, Zvf, 2);
959 valueVec = sqrt(xVec*xVec + yVec*yVec + zVec*zVec);
962 if (mSlicers[slicer]->GetOverlayActor() ) {
964 vtkImageData *overlay = dynamic_cast<vtkImageData*>(mSlicers[slicer]->GetOverlayMapper()->GetInput());
965 double Xover = (x - overlay->GetOrigin()[0]) / overlay->GetSpacing()[0];
966 double Yover = (y - overlay->GetOrigin()[1]) / overlay->GetSpacing()[1];
967 double Zover = (z - overlay->GetOrigin()[2]) / overlay->GetSpacing()[2];
968 valueOver = this->GetScalarComponentAsDouble(overlay, Xover, Yover, Zover);
970 if (mSlicers[slicer]->GetFusionActor() ) {
972 vtkImageData *fusion = dynamic_cast<vtkImageData*>(mSlicers[slicer]->GetFusionMapper()->GetInput());
973 double Xover = (x - fusion->GetOrigin()[0]) / fusion->GetSpacing()[0];
974 double Yover = (y - fusion->GetOrigin()[1]) / fusion->GetSpacing()[1];
975 double Zover = (z - fusion->GetOrigin()[2]) / fusion->GetSpacing()[2];
976 valueFus = this->GetScalarComponentAsDouble(fusion, Xover, Yover, Zover);
978 emit UpdatePosition(mSlicers[slicer]->GetCursorVisibility(),
980 emit UpdateVector(displayVec,xVec, yVec, zVec, valueVec);
981 emit UpdateOverlay(displayOver,valueOver,value);
982 emit UpdateFusion(displayFus,valueFus);
985 //----------------------------------------------------------------------------
988 //----------------------------------------------------------------------------
989 void vvSlicerManager::Activated()
991 emit currentImageChanged(mId);
993 //----------------------------------------------------------------------------
996 //----------------------------------------------------------------------------
997 void vvSlicerManager::Picked()
999 emit currentPickedImageChanged(mId);
1001 //----------------------------------------------------------------------------
1004 //----------------------------------------------------------------------------
1005 void vvSlicerManager::UpdateWindowLevel()
1007 emit WindowLevelChanged();
1009 //----------------------------------------------------------------------------
1012 //----------------------------------------------------------------------------
1013 void vvSlicerManager::UpdateSlice(int slicer)
1015 if (mPreviousSlice[slicer] == mSlicers[slicer]->GetSlice()) {
1016 //DD("============= NOTHING");
1019 //std::cout << "vvSlicerManager::UpdateSlice " << slicer << " " << mSlicers[slicer]->GetSlice() << std::endl;
1020 emit UpdateSlice(slicer, mSlicers[slicer]->GetSlice());
1021 mSlicers[slicer]->Render(); // DS <-- I add this, this could/must be the only Render ...
1022 mPreviousSlice[slicer] = mSlicers[slicer]->GetSlice();
1024 //----------------------------------------------------------------------------
1027 //----------------------------------------------------------------------------
1028 void vvSlicerManager::UpdateTSlice(int slicer)
1030 int slice = mSlicers[slicer]->GetSlice();
1031 int tslice = mSlicers[slicer]->GetTSlice();
1032 if (mPreviousSlice[slicer] == slice) {
1033 if (mPreviousTSlice[slicer] == tslice) {
1034 // DD("************** NOTHING ***********");
1038 mPreviousSlice[slicer] = slice;
1039 mPreviousTSlice[slicer] = tslice;
1040 //std::cout << "vvSlicerManager::UpdateTSlice " << slicer << " " << tslice << std::endl;
1041 emit UpdateTSlice(slicer, tslice);
1043 //----------------------------------------------------------------------------
1046 //----------------------------------------------------------------------------
1047 void vvSlicerManager::UpdateSliceRange(int slicer)
1049 emit UpdateSliceRange(slicer,
1050 mSlicers[slicer]->GetSliceRange()[0], mSlicers[slicer]->GetSliceRange()[1],
1051 0,mSlicers[slicer]->GetTMax());
1053 //----------------------------------------------------------------------------
1055 //----------------------------------------------------------------------------
1056 void vvSlicerManager::SetSlicingPreset(SlicingPresetType preset)
1058 if(mSlicingPreset==preset)
1061 vtkMatrix4x4 *imageTransformInverse = vtkMatrix4x4::New();
1062 mImage->GetTransform()[this->GetTSlice()]->GetInverse(imageTransformInverse);
1064 for(int i=0; i< this->GetNumberOfSlicers(); i++){
1065 vvSlicer *s = this->GetSlicer(i);
1069 s->GetSlicingTransform()->Identity();
1071 case VOXELS_SLICING:
1072 s->GetSlicingTransform()->SetMatrix(imageTransformInverse);
1075 imageTransformInverse->Delete();
1078 s->ForceUpdateDisplayExtent();
1079 s->SetSlice((s->GetInput()->GetWholeExtent()[s->GetSliceOrientation()*2+1]
1080 +s->GetInput()->GetWholeExtent()[s->GetSliceOrientation()*2])/2.0);
1085 imageTransformInverse->Delete();
1086 mSlicingPreset = preset;
1089 //----------------------------------------------------------------------------
1091 //----------------------------------------------------------------------------
1092 void vvSlicerManager::SetPreset(int preset)
1094 //vtkLookupTable* LUT = static_cast<vtkLookupTable*>(mSlicers[0]->GetWindowLevel()->GetLookupTable());
1095 double window = mSlicers[0]->GetColorWindow();
1096 double level = mSlicers[0]->GetColorLevel();
1098 std::string component_type=mImage->GetScalarTypeAsITKString();
1102 mImage->GetScalarRange(range);
1103 window = range[1] - range[0];
1104 level = (range[1] + range[0])* 0.5;
1134 this->SetColorWindow(window);
1135 this->SetColorLevel(level);
1142 //----------------------------------------------------------------------------
1145 //----------------------------------------------------------------------------
1146 void vvSlicerManager::SetLocalColorWindowing(const int slicer, const bool bCtrlKey)
1149 if(bCtrlKey && this->mSlicers[slicer]->GetFusion()) {
1150 int t = mSlicers[slicer]->GetFusionTSlice();
1151 this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max,
1152 this->mSlicers[slicer]->GetFusion()->GetVTKImages()[t],
1153 this->mSlicers[slicer]->GetConcatenatedFusionTransform());
1154 this->SetFusionWindow(max-min);
1155 this->SetFusionLevel(0.5*(min+max));
1156 this->SetColorMap(mColorMap);
1158 else if(bCtrlKey && this->mSlicers[slicer]->GetOverlay()) {
1159 int t = mSlicers[slicer]->GetOverlayTSlice();
1160 this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max,
1161 this->mSlicers[slicer]->GetOverlay()->GetVTKImages()[t],
1162 this->mSlicers[slicer]->GetConcatenatedOverlayTransform());
1163 if(this->mSlicers[slicer]->GetLinkOverlayWindowLevel()){
1164 this->SetColorWindow(max-min);
1165 this->SetColorLevel(0.5*(min+max));
1167 this->SetOverlayColorWindow(max-min);
1168 this->SetOverlayColorLevel(0.5*(min+max));
1172 int t = this->GetTSlice();
1173 this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max,
1174 this->mSlicers[slicer]->GetImage()->GetVTKImages()[t],
1175 this->mSlicers[slicer]->GetConcatenatedTransform());
1176 this->SetColorWindow(max-min);
1177 this->SetColorLevel(0.5*(min+max));
1181 this->UpdateWindowLevel();
1183 //----------------------------------------------------------------------------
1186 //----------------------------------------------------------------------------
1187 void vvSlicerManager::SetColorMap(int colormap)
1190 range[0] = mSlicers[0]->GetInput()->GetScalarRange()[0];
1191 range[1] = mSlicers[0]->GetInput()->GetScalarRange()[1];
1193 double window = mSlicers[0]->GetWindowLevel()->GetWindow();
1194 double level = mSlicers[0]->GetWindowLevel()->GetLevel();
1196 vtkLookupTable* LUT = static_cast<vtkLookupTable*>(mSlicers[0]->GetWindowLevel()->GetLookupTable());
1205 LUT = vtkLookupTable::New();
1206 LUT->SetValueRange(0,1);
1207 LUT->SetSaturationRange(1,1);
1208 LUT->SetHueRange(0,0.18);
1212 LUT = vtkLookupTable::New();
1213 LUT->SetValueRange(0,1);
1214 LUT->SetSaturationRange(1,1);
1215 LUT->SetHueRange(0.4,0.80);
1219 LUT = vtkLookupTable::New();
1220 LUT->SetValueRange(0.5,1);
1221 LUT->SetSaturationRange(1,1);
1222 LUT->SetHueRange(0.666,0);
1226 LUT = vtkLookupTable::New();
1227 LUT->SetValueRange(1,1);
1228 LUT->SetSaturationRange(1,1);
1229 LUT->SetHueRange(0,1);
1230 LUT->SetAlphaRange(1, 1);
1234 LUT = vtkLookupTable::New();
1235 LUT->SetValueRange(1,1);
1236 LUT->SetSaturationRange(1,1);
1237 LUT->SetHueRange(1,0.1);
1238 //LUT->SetRampToLinear();
1242 LUT->SetTableRange(level-fabs(window)/2,level+fabs(window)/2);
1245 vtkWindowLevelLookupTable* fusLUT = NULL;
1246 if (mSlicers[0]->GetFusion()) { // && mFusionColorMap >= 0) {
1247 fusLUT = vtkWindowLevelLookupTable::New();
1248 double fusRange [2];
1249 fusRange[0] = mFusionLevel - mFusionWindow/2;
1250 fusRange[1] = mFusionLevel + mFusionWindow/2;
1251 double* frange = mFusionReader->GetOutput()->GetVTKImages()[0]->GetScalarRange();
1252 fusLUT->SetTableRange(frange);
1253 fusLUT->SetValueRange(1,1);
1254 fusLUT->SetSaturationRange(1,1);
1255 fusLUT->SetAlphaRange(1, 1);
1256 fusLUT->SetWindow(mFusionWindow);
1257 fusLUT->SetLevel(mFusionLevel);
1258 if (mFusionColorMap == 1)
1259 fusLUT->SetHueRange(0,0.18);
1260 else if (mFusionColorMap == 2)
1261 fusLUT->SetHueRange(0.4,0.80);
1262 else if (mFusionColorMap == 3)
1264 fusLUT->SetHueRange(0.666, 0);
1265 fusLUT->SetValueRange(0.5, 1);
1267 else if (mFusionColorMap == 4)
1268 fusLUT->SetHueRange(0,1);
1269 else if (mFusionColorMap <= 0)
1271 fusLUT->SetValueRange(0,1);
1272 fusLUT->SetSaturationRange(0,0);
1275 fusLUT->ForceBuild();
1278 // set color table transparency
1279 //double alpha_range=(double)mFusionThresOpacity/10;
1280 double range_end = fusRange[0] + (double)mFusionThresOpacity*(fusRange[1] - fusRange[0])/100;
1281 double curr_value = fusRange[0];
1282 int nvalues = fusLUT->GetNumberOfTableValues();
1283 for (double i = 0; curr_value < range_end; i++) {
1284 fusLUT->GetTableValue(i, v);
1286 //if (curr_value >= -alpha_range && curr_value <= alpha_range) v[3] = pow(fabs(curr_value/alpha_range),2);
1288 fusLUT->SetTableValue(i, v);
1289 curr_value += (fusRange[1] - fusRange[0])/nvalues;
1292 for ( unsigned int i = 0; i < mSlicers.size(); i++) {
1294 if (mSlicers[i]->GetOverlay()) {
1295 vtkLookupTable* supLUT = vtkLookupTable::New();
1296 supLUT->SetTableRange(range[0],range[1]);
1297 supLUT->SetValueRange(1,1);
1298 supLUT->SetSaturationRange(1,1);
1299 supLUT->SetHueRange(double(mOverlayColor)/360,double(mOverlayColor)/360);
1301 vtkLookupTable* invLUT = vtkLookupTable::New();
1302 invLUT->SetTableRange(range[0],range[1]);
1303 invLUT->SetValueRange(1,1);
1304 invLUT->SetSaturationRange(1,1);
1305 invLUT->SetHueRange(double((mOverlayColor+180)%360)/360,double((mOverlayColor+180)%360)/360);
1307 dynamic_cast<vvImageMapToWLColors*>(mSlicers[i]->GetWindowLevel())
1308 ->SetWindowLevelMode(true);
1309 mSlicers[i]->GetWindowLevel()->SetLookupTable(supLUT);
1310 mSlicers[i]->GetOverlayMapper()->SetLookupTable(invLUT);
1313 } else if (mSlicers[i]->GetOverlay()) {
1314 //dynamic_cast<vvImageMapToWLColors*>(mSlicers[i]->GetWindowLevel())
1315 //->SetWindowLevelMode(false);
1316 mSlicers[i]->GetWindowLevel()->SetLookupTable(LUT);
1318 mSlicers[i]->GetWindowLevel()->SetLookupTable(LUT);
1321 if (mSlicers[i]->GetFusion()) {
1322 mSlicers[i]->ShowFusionLegend(mFusionShowLegend);
1323 mSlicers[i]->GetFusionMapper()->SetLookupTable(fusLUT);
1324 mSlicers[i]->GetFusionActor()->SetOpacity(double(mFusionOpacity)/100);
1330 mColorMap = colormap;
1332 //----------------------------------------------------------------------------
1335 //----------------------------------------------------------------------------
1336 vvLandmarks* vvSlicerManager::GetLandmarks()
1338 if (mLandmarks == NULL) {
1339 mLandmarks = new vvLandmarks(mSlicers[0]->GetTMax()+1);
1340 for (unsigned int i = 0; i < mSlicers.size(); i++)
1341 mSlicers[i]->SetLandmarks(mLandmarks);
1345 //----------------------------------------------------------------------------
1348 //----------------------------------------------------------------------------
1349 void vvSlicerManager::AddLandmark(float x,float y,float z,float t)
1351 double x_index = (x - mSlicers[0]->GetInput()->GetOrigin()[0])/mSlicers[0]->GetInput()->GetSpacing()[0];
1352 double y_index = (y - mSlicers[0]->GetInput()->GetOrigin()[1])/mSlicers[0]->GetInput()->GetSpacing()[1];
1353 double z_index = (z - mSlicers[0]->GetInput()->GetOrigin()[2])/mSlicers[0]->GetInput()->GetSpacing()[2];
1354 if (x_index >= mSlicers[0]->GetInput()->GetWholeExtent()[0]-0.5 &&
1355 x_index <= mSlicers[0]->GetInput()->GetWholeExtent()[1]+0.5 &&
1356 y_index >= mSlicers[0]->GetInput()->GetWholeExtent()[2]-0.5 &&
1357 y_index <= mSlicers[0]->GetInput()->GetWholeExtent()[3]+0.5 &&
1358 z_index >= mSlicers[0]->GetInput()->GetWholeExtent()[4]-0.5 &&
1359 z_index <= mSlicers[0]->GetInput()->GetWholeExtent()[5]+0.5) {
1360 double value = this->GetScalarComponentAsDouble(mSlicers[0]->GetInput(), x_index, y_index, z_index);
1361 this->GetLandmarks()->AddLandmark(x,y,z,t,value);
1362 emit LandmarkAdded();
1365 //----------------------------------------------------------------------------
1367 //----------------------------------------------------------------------------
1368 void vvSlicerManager::PrevImage(int slicer)
1370 emit ChangeImageWithIndexOffset(this, slicer, -1);
1372 //----------------------------------------------------------------------------
1374 //----------------------------------------------------------------------------
1375 void vvSlicerManager::NextImage(int slicer)
1377 emit ChangeImageWithIndexOffset(this, slicer, 1);
1379 //----------------------------------------------------------------------------
1381 //----------------------------------------------------------------------------
1382 void vvSlicerManager::VerticalSliderHasChanged(int slicer, int slice)
1384 emit AVerticalSliderHasChanged(slicer, slice);
1387 //----------------------------------------------------------------------------
1389 //----------------------------------------------------------------------------
1390 double vvSlicerManager::GetScalarComponentAsDouble(vtkImageData *image, double X, double Y, double Z, int component)
1393 return mSlicers[0]->GetScalarComponentAsDouble(image, X, Y, Z, ix, iy, iz, component);
1395 //----------------------------------------------------------------------------