vv/vvToolBinarize.cxx

   1 /*=========================================================================
   2   Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
   3
   4   Authors belong to:
   5   - University of LYON              http://www.universite-lyon.fr/
   6   - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
   7   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
   8
   9   This software is distributed WITHOUT ANY WARRANTY; without even
  10   the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  11   PURPOSE.  See the copyright notices for more information.
  12
  13   It is distributed under dual licence
  14
  15   - BSD        See included LICENSE.txt file
  16   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  17   ======================================================================-====*/
  18
  19 // vv
  20 #include "vvToolBinarize.h"
  21 #include "vvSlicerManager.h"
  22 #include "vvSlicer.h"
  23 #include "vvToolInputSelectorWidget.h"
  24
  25 // clitk
  26 #include "clitkBinarizeImageGenericFilter.h"
  27
  28 // vtk
  29 #include <vtkImageActor.h>
  30 #include <vtkCamera.h>
  31 #include <vtkImageClip.h>
  32 #include <vtkRenderWindow.h>
  33
  34 //------------------------------------------------------------------------------
  35 // Create the tool and automagically (I like this word) insert it in
  36 // the main window menu.
  37 ADD_TOOL(vvToolBinarize);
  38 //------------------------------------------------------------------------------
  39
  40
  41 //------------------------------------------------------------------------------
  42 void vvToolBinarize::Initialize()
  43 {
  44   SetToolName("Binarize");
  45   SetToolMenuName("Binarize");
  46   SetToolIconFilename(":/common/icons/binarize.png");
  47   SetToolTip("Image interactive binarization with thresholds.");
  48 }
  49 //------------------------------------------------------------------------------
  50
  51
  52 //------------------------------------------------------------------------------
  53 vvToolBinarize::vvToolBinarize(vvMainWindowBase * parent, Qt::WindowFlags f)
  54   :vvToolWidgetBase(parent,f),
  55    vvToolBase<vvToolBinarize>(parent),
  56    Ui::vvToolBinarize()
  57 {
  58   DD("Const binarize");
  59   // GUI Initialization
  60   Ui_vvToolBinarize::setupUi(mToolWidget);
  61   mInteractiveDisplayIsEnabled = mCheckBoxInteractiveDisplay->isChecked();
  62
  63   // Connect signals & slots
  64   connect(mRadioButtonLowerThan, SIGNAL(toggled(bool)), this, SLOT(enableLowerThan(bool)));
  65   connect(mCheckBoxUseFG, SIGNAL(toggled(bool)), this, SLOT(useFGBGtoggled(bool)));
  66   connect(mCheckBoxUseBG, SIGNAL(toggled(bool)), this, SLOT(useFGBGtoggled(bool)));
  67   connect(mCheckBoxInteractiveDisplay, SIGNAL(toggled(bool)), this, SLOT(InteractiveDisplayToggled(bool)));
  68
  69   // Initialize some widget
  70   mThresholdSlider1->SetText("");
  71   mThresholdSlider2->SetText("");
  72   mFGSlider->SetText("Foreground value");
  73   mBGSlider->SetText("Background value");
  74
  75   // Main filter
  76   mFilter = new clitk::BinarizeImageGenericFilter;
  77
  78   // Set how many inputs are needed for this tool
  79   AddInputSelector("Select one image", mFilter);
  80 }
  81 //------------------------------------------------------------------------------
  82
  83
  84 //------------------------------------------------------------------------------
  85 vvToolBinarize::~vvToolBinarize()
  86 {
  87 }
  88 //------------------------------------------------------------------------------
  89
  90
  91 //------------------------------------------------------------------------------
  92 void vvToolBinarize::InteractiveDisplayToggled(bool b)
  93 {
  94   mInteractiveDisplayIsEnabled = b;
  95   if (!mInteractiveDisplayIsEnabled) {
  96     RemoveVTKObjects();
  97   } else {
  98     for(unsigned int i=0; i<mImageContour.size(); i++) {
  99       mImageContour[i]->ShowActors();
 100       if (mRadioButtonLowerThan->isChecked())
 101         mImageContourLower[i]->ShowActors();
 102     }
 103     if (mCurrentSlicerManager)
 104       mCurrentSlicerManager->Render();
 105   }
 106 }
 107 //------------------------------------------------------------------------------
 108
 109
 110 //------------------------------------------------------------------------------
 111 void vvToolBinarize::RemoveVTKObjects()
 112 {
 113   for(unsigned int i=0; i<mImageContour.size(); i++) {
 114     mImageContour[i]->HideActors();
 115     mImageContourLower[i]->HideActors();
 116   }
 117   if (mCurrentSlicerManager)
 118     mCurrentSlicerManager->Render();
 119 }
 120 //------------------------------------------------------------------------------
 121
 122
 123 //------------------------------------------------------------------------------
 124 bool vvToolBinarize::close()
 125 {
 126   // RemoveVTKObjects();
 127   return vvToolWidgetBase::close();
 128 }
 129 //------------------------------------------------------------------------------
 130
 131
 132 //------------------------------------------------------------------------------
 133 void vvToolBinarize::closeEvent(QCloseEvent *event) {
 134   RemoveVTKObjects();
 135   event->accept();
 136 }
 137 //------------------------------------------------------------------------------
 138
 139
 140 //------------------------------------------------------------------------------
 141 void vvToolBinarize::reject()
 142 {
 143   // DD("vvToolBinarize::reject");
 144   RemoveVTKObjects();
 145   return vvToolWidgetBase::reject();
 146 }
 147 //------------------------------------------------------------------------------
 148
 149
 150 //------------------------------------------------------------------------------
 151 void vvToolBinarize::enableLowerThan(bool b)
 152 {
 153   if (!b) {
 154     mThresholdSlider1->resetMaximum();
 155     for(unsigned int i=0; i<mImageContour.size(); i++) {
 156       mImageContourLower[i]->HideActors();
 157     }
 158     mCurrentSlicerManager->Render();
 159   } else {
 160     valueChangedT1(mThresholdSlider1->GetValue());
 161     valueChangedT2(mThresholdSlider2->GetValue());
 162     for(unsigned int i=0; i<mImageContour.size(); i++) {
 163       mImageContourLower[i]->ShowActors();
 164     }
 165     mCurrentSlicerManager->Render();
 166   }
 167 }
 168 //------------------------------------------------------------------------------
 169
 170
 171 //------------------------------------------------------------------------------
 172 void vvToolBinarize::useFGBGtoggled(bool)
 173 {
 174   if (!mCheckBoxUseBG->isChecked() && !mCheckBoxUseFG->isChecked())
 175     mCheckBoxUseBG->toggle();
 176 }
 177 //------------------------------------------------------------------------------
 178
 179
 180 //------------------------------------------------------------------------------
 181 // void vvToolBinarize::InputIsSelected(std::vector<vvSlicerManager *> & m) {
 182 //   DD("vvToolBinarize::InputIsSelected vector in binarize");
 183 //   DD(m.size());
 184 // }
 185 void vvToolBinarize::InputIsSelected(vvSlicerManager * m)
 186 {
 187   mCurrentSlicerManager = m;
 188
 189   // Specific for this gui
 190   mThresholdSlider1->SetValue(0);
 191   mThresholdSlider2->SetValue(0);
 192   mThresholdSlider1->SetImage(mCurrentImage);
 193   mThresholdSlider2->SetImage(mCurrentImage);
 194   mFGSlider->SetImage(mCurrentImage);
 195   mBGSlider->SetImage(mCurrentImage);
 196   //  DD(mCurrentSlicerManager->GetFileName().c_str());
 197   //  mFGSlider->SetMaximum(mCurrentImage->GetFirstVTKImageData()->GetScalarTypeMax());
 198   //   mFGSlider->SetMinimum(mCurrentImage->GetFirstVTKImageData()->GetScalarTypeMin());
 199   //   mBGSlider->SetMaximum(mCurrentImage->GetFirstVTKImageData()->GetScalarTypeMax());
 200   //   mBGSlider->SetMinimum(mCurrentImage->GetFirstVTKImageData()->GetScalarTypeMin());
 201
 202   // Output is uchar ...
 203   mFGSlider->SetMaximum(255);
 204   mFGSlider->SetMinimum(0);
 205   mBGSlider->SetMaximum(255);
 206   mBGSlider->SetMinimum(0);
 207
 208   mFGSlider->SetValue(1);
 209   mBGSlider->SetValue(0);
 210   mFGSlider->SetSingleStep(1);
 211   mBGSlider->SetSingleStep(1);
 212
 213   // VTK objects for interactive display
 214   for(int i=0; i<mCurrentSlicerManager->GetNumberOfSlicers(); i++) {
 215     mImageContour.push_back(vvImageContour::New());
 216     mImageContour[i]->SetSlicer(mCurrentSlicerManager->GetSlicer(i));
 217     mImageContour[i]->SetColor(1.0, 0.0, 0.0);
 218     mImageContourLower.push_back(vvImageContour::New());
 219     mImageContourLower[i]->SetSlicer(mCurrentSlicerManager->GetSlicer(i));
 220     mImageContourLower[i]->SetColor(0.0, 0.0, 1.0);
 221   }
 222   valueChangedT1(mThresholdSlider1->GetValue());
 223
 224   connect(mThresholdSlider1, SIGNAL(valueChanged(double)), this, SLOT(valueChangedT1(double)));
 225   connect(mThresholdSlider2, SIGNAL(valueChanged(double)), this, SLOT(valueChangedT2(double)));
 226
 227   connect(mCurrentSlicerManager,SIGNAL(UpdateSlice(int,int)),this,SLOT(UpdateSlice(int, int)));
 228   connect(mCurrentSlicerManager,SIGNAL(UpdateTSlice(int,int)),this,SLOT(UpdateSlice(int, int)));
 229
 230   //  connect(mCurrentSlicerManager, SIGNAL(LeftButtonReleaseSignal(int)), SLOT(LeftButtonReleaseEvent(int)));
 231 }
 232 //------------------------------------------------------------------------------
 233
 234
 235 //------------------------------------------------------------------------------
 236 // void vvToolBinarize::LeftButtonReleaseEvent(int slicer) {
 237 //   DD("LeftButtonReleaseEvent");
 238 //   for(int i=0; i<mCurrentSlicerManager->GetNumberOfSlicers(); i++) {
 239 //     if (i == slicer);
 240 //     mCurrentSlicerManager->GetSlicer(i)->GetRenderWindow()->Render();
 241 //   }
 242 // }
 243 //------------------------------------------------------------------------------
 244
 245
 246 //------------------------------------------------------------------------------
 247 void vvToolBinarize::UpdateSlice(int slicer,int slices)
 248 {
 249   if (!mInteractiveDisplayIsEnabled) return;
 250   if (!mCurrentSlicerManager) close();
 251   mImageContour[slicer]->Update(mThresholdSlider1->GetValue());
 252   if (mRadioButtonLowerThan->isChecked())
 253     mImageContourLower[slicer]->Update(mThresholdSlider2->GetValue());
 254 }
 255 //------------------------------------------------------------------------------
 256
 257
 258 //------------------------------------------------------------------------------
 259 void vvToolBinarize::GetArgsInfoFromGUI()
 260 {
 261
 262   /* //KEEP THIS FOR READING GGO FROM FILE
 263      int argc=1;
 264      std::string a = "toto";
 265      char * const* argv = new char*;
 266      //a.c_str();
 267      struct cmdline_parser_params p;
 268      p.check_required = 0;
 269      int good = cmdline_parser_ext(argc, argv, &args_info, &p);
 270      DD(good);
 271   */
 272   cmdline_parser_clitkBinarizeImage_init(&mArgsInfo); // Initialisation to default
 273   bool inverseBGandFG = false;
 274
 275   mArgsInfo.lower_given = 1;
 276   mArgsInfo.lower_arg = mThresholdSlider1->GetValue();
 277   if (mRadioButtonLowerThan->isChecked()) {
 278     mArgsInfo.upper_given = 1;
 279     mArgsInfo.upper_arg = mThresholdSlider2->GetValue();
 280     if (mArgsInfo.upper_arg<mArgsInfo.lower_arg) {
 281       mArgsInfo.upper_given = 0;
 282       DD("TODO : lower thres greater than greater thres ! Ignoring ");
 283     }
 284   }
 285
 286   mArgsInfo.fg_arg = mFGSlider->GetValue();
 287   mArgsInfo.bg_arg = mBGSlider->GetValue();
 288
 289   if (inverseBGandFG) {
 290     mArgsInfo.fg_arg = mFGSlider->GetValue();
 291     mArgsInfo.bg_arg = mBGSlider->GetValue();
 292   }
 293   mArgsInfo.fg_given = 1;
 294   mArgsInfo.bg_given = 1;
 295
 296   if (mCheckBoxUseBG->isChecked()) {
 297     if (mCheckBoxUseFG->isChecked()) mArgsInfo.mode_arg = (char*)"both";
 298     else mArgsInfo.mode_arg = (char*)"BG";
 299   } else mArgsInfo.mode_arg = (char*)"FG";
 300
 301   mArgsInfo.verbose_flag = false;
 302
 303   // // Required (even if not used)
 304   // mArgsInfo.input_given = 0;
 305   // mArgsInfo.output_given = 0;
 306
 307   // mArgsInfo.input_arg = new char;
 308   // mArgsInfo.output_arg = new char;
 309 }
 310 //------------------------------------------------------------------------------
 311
 312
 313 //------------------------------------------------------------------------------
 314 void vvToolBinarize::apply()
 315 {
 316   if (!mCurrentSlicerManager) close();
 317   QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
 318   GetArgsInfoFromGUI();
 319
 320   // Main filter
 321   clitk::BinarizeImageGenericFilter::Pointer filter =
 322     clitk::BinarizeImageGenericFilter::New();
 323   filter->SetInputVVImage(mCurrentImage);
 324   filter->SetArgsInfo(mArgsInfo);
 325   filter->Update();
 326
 327   // Output
 328   vvImage::Pointer output = filter->GetOutputVVImage();
 329   std::ostringstream osstream;
 330   osstream << "Binarized_" << mCurrentSlicerManager->GetSlicer(0)->GetFileName() << ".mhd";
 331   AddImage(output,osstream.str());
 332   QApplication::restoreOverrideCursor();
 333   close();
 334 }
 335 //------------------------------------------------------------------------------
 336
 337
 338 //------------------------------------------------------------------------------
 339 void vvToolBinarize::valueChangedT2(double v)
 340 {
 341   //  DD("valueChangedT2");
 342   if (mRadioButtonLowerThan->isChecked()) {
 343     mThresholdSlider1->SetMaximum(v);
 344     if (!mInteractiveDisplayIsEnabled) return;
 345     for(int i=0;i<mCurrentSlicerManager->GetNumberOfSlicers(); i++) {
 346       mImageContourLower[i]->Update(v);
 347     }
 348     mCurrentSlicerManager->Render();
 349   }
 350 }
 351 //------------------------------------------------------------------------------
 352
 353
 354 //------------------------------------------------------------------------------
 355 void vvToolBinarize::valueChangedT1(double v)
 356 {
 357   //  DD("valueChangedT1");
 358   if (!mCurrentSlicerManager) close();
 359   mThresholdSlider2->SetMinimum(v);
 360   //  int m1 = (int)lrint(v);
 361   if (!mInteractiveDisplayIsEnabled) return;
 362   for(int i=0;i<mCurrentSlicerManager->GetNumberOfSlicers(); i++) {
 363     mImageContour[i]->Update(v);
 364   }
 365   mCurrentSlicerManager->Render();
 366 }
 367 //------------------------------------------------------------------------------