1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ======================================================================-====*/
19 #include "vvToolStructureSetManager.h"
20 #include "vvImageReader.h"
21 #include "vvStructureSetActor.h"
23 #include "vvROIActor.h"
24 #include <QFileDialog>
25 #include <QMessageBox>
26 #include <vtkLookupTable.h>
27 #include <vtkRenderWindow.h>
29 //------------------------------------------------------------------------------
30 // Create the tool and automagically (I like this word) insert it in
31 // the main window menu.
32 ADD_TOOL(vvToolStructureSetManager);
33 //------------------------------------------------------------------------------
35 //------------------------------------------------------------------------------
36 vvToolStructureSetManager::vvToolStructureSetManager(vvMainWindowBase * parent, Qt::WindowFlags f)
37 :vvToolWidgetBase(parent, f),
38 vvToolBase<vvToolStructureSetManager>(parent),
39 Ui::vvToolStructureSetManager() {
41 Ui_vvToolStructureSetManager::setupUi(mToolWidget);
43 mCurrentStructureSet = NULL;
45 mDefaultLUTColor = vtkLookupTable::New();
46 for(unsigned int i=0; i<mDefaultLUTColor->GetNumberOfTableValues(); i++) {
47 double r = (rand()/(RAND_MAX+1.0));
48 double v = (rand()/(RAND_MAX+1.0));
49 double b = (rand()/(RAND_MAX+1.0));
50 mDefaultLUTColor->SetTableValue(i, r, v, b);
51 // std::cout << "mDefaultLUTColor->SetTableValue(" << i << ", " << r << ", " << v << ", " << b << ");" << std::endl;
53 #include "vvDefaultLut.h"
56 AddInputSelector("Select image");
58 //------------------------------------------------------------------------------
61 //------------------------------------------------------------------------------
62 vvToolStructureSetManager::~vvToolStructureSetManager() {
63 DD("vvToolStructureSetManager DESTRUCTOR");
65 //------------------------------------------------------------------------------
68 //------------------------------------------------------------------------------
69 void vvToolStructureSetManager::Initialize() {
70 SetToolName("StructureSetManager");
71 SetToolMenuName("StructureSet");
72 SetToolIconFilename(":/common/icons/ducky.png");
73 SetToolTip("Display Structure Set.");
74 SetToolExperimental(true);
76 //------------------------------------------------------------------------------
79 //------------------------------------------------------------------------------
80 void vvToolStructureSetManager::InputIsSelected(vvSlicerManager *m) {
81 // Hide the input selector
85 splitter->setSizes(s);
87 // connect(mOpenComboBox, SIGNAL(activated(int)), this, SLOT(open(int)));
89 connect(mOpenBinaryButton, SIGNAL(clicked()), this, SLOT(openBinaryImage()));
91 DD(mCurrentImage->GetNumberOfDimensions());
93 // Seems that the following is not needed to refresh ...
94 // connect(m, SIGNAL(LeftButtonReleaseSignal(int)), SLOT(LeftButtonReleaseEvent(int)));
96 connect(mTree, SIGNAL(itemSelectionChanged()), this, SLOT(selectedItemChangedInTree()));
98 //------------------------------------------------------------------------------
101 //------------------------------------------------------------------------------
102 void vvToolStructureSetManager::selectedItemChangedInTree() {
103 DD("selectedItemChangedInTree");
104 QList<QTreeWidgetItem *> l = mTree->selectedItems();
106 QTreeWidgetItem * w = l[0];
107 if (mMapTreeWidgetToROI.find(w) == mMapTreeWidgetToROI.end()) return; // Search for SS (first)
108 clitk::DicomRT_ROI * roi = mMapTreeWidgetToROI[w];
110 setCurrentSelectedROI(roi);
112 //------------------------------------------------------------------------------
115 //------------------------------------------------------------------------------
116 void vvToolStructureSetManager::setCurrentSelectedROI(clitk::DicomRT_ROI * roi) {
117 // mCheckBoxShow = // get roi actor .../
120 //------------------------------------------------------------------------------
123 //------------------------------------------------------------------------------
124 void vvToolStructureSetManager::LeftButtonReleaseEvent(int slicer) {
125 DD("vvToolStructureSetManager::UpdateSlice");
129 for(int i=0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
131 mCurrentSlicerManager->GetSlicer(i)->GetRenderWindow()->Render();
134 //------------------------------------------------------------------------------
137 //------------------------------------------------------------------------------
138 void vvToolStructureSetManager::open(int type) {
141 case 0: openBinaryImage(); return; // Open binary image;
142 case 1: DD("TODO"); return; // Open DICOM RT
143 case 2: DD("TODO"); return; // Open mesh
144 default: std::cerr << "Error ????" << std::endl; exit(0);
147 //------------------------------------------------------------------------------
150 //------------------------------------------------------------------------------
151 void vvToolStructureSetManager::addRoiInTreeWidget(clitk::DicomRT_ROI * roi, QTreeWidgetItem * ww) {
152 QTreeWidgetItem * w = new QTreeWidgetItem(ww);
153 w->setText(0, QString("%1").arg(roi->GetROINumber()));
154 w->setText(1, QString("%1").arg(roi->GetName().c_str()));
155 QBrush brush(QColor(roi->GetDisplayColor()[0]*255, roi->GetDisplayColor()[1]*255, roi->GetDisplayColor()[2]*255));
156 brush.setStyle(Qt::SolidPattern);
157 for(int i=0; i<w->columnCount (); i++) {
158 w->setBackground(i, brush);
160 mMapROIToTreeWidget[roi] = w;
161 mMapTreeWidgetToROI[w] = roi;
162 // Connect ROI TreeWidget
165 //------------------------------------------------------------------------------
168 //------------------------------------------------------------------------------
169 void vvToolStructureSetManager::updateStructureSetInTreeWidget(int index, clitk::DicomRT_StructureSet * s) {
170 QTreeWidgetItem * ss;
171 if (mMapStructureSetIndexToTreeWidget.find(index) == mMapStructureSetIndexToTreeWidget.end()) {
173 ss = new QTreeWidgetItem(mTree);
174 // ss->setFlags(Qt::ItemIsSelectable|Qt::ItemIsUserCheckable|Qt::ItemIsEnabled|Qt::ItemIsTristate);
175 ss->setText(0, QString("S%1").arg(index));
176 ss->setText(1, QString("%1").arg(s->GetLabel().c_str()));
178 mMapStructureSetIndexToTreeWidget[index] = ss;
180 // Connect Structure TreeWidget
183 else ss = mMapStructureSetIndexToTreeWidget[index];
186 const std::vector<clitk::DicomRT_ROI*> & rois = s->GetListOfROI();
187 for(unsigned int i=0; i<rois.size(); i++) {
188 if (mMapROIToTreeWidget.find(rois[i]) == mMapROIToTreeWidget.end())
189 addRoiInTreeWidget(rois[i], ss);
192 //------------------------------------------------------------------------------
195 //------------------------------------------------------------------------------
196 int vvToolStructureSetManager::addStructureSet(clitk::DicomRT_StructureSet * mStructureSet) {
198 // Create actor for this SS
199 vvStructureSetActor * mStructureSetActor = new vvStructureSetActor;
200 mStructureSetActor->SetStructureSet(mStructureSet);
201 mStructureSetActor->SetSlicerManager(mCurrentSlicerManager);
203 // Insert in lists and get index
204 mStructureSetsList.push_back(mStructureSet);
205 mStructureSetActorsList.push_back(mStructureSetActor);
206 int index = mStructureSetsList.size()-1;
211 //------------------------------------------------------------------------------
214 //------------------------------------------------------------------------------
215 void vvToolStructureSetManager::openBinaryImage() {
216 DD("openBinaryImage");
217 // Select current StructureSet (or create)
219 DD(mCurrentStructureSetIndex);
220 if (mCurrentStructureSet == NULL) {
221 if (mStructureSetsList.size() == 0) { // Create a default SS
222 clitk::DicomRT_StructureSet * mStructureSet = new clitk::DicomRT_StructureSet;
223 index = addStructureSet(mStructureSet);
226 else { // Get first SS
231 index = mCurrentStructureSetIndex;
234 // TODO -> SET THIS SS AS CURRENT
235 mCurrentStructureSet = mStructureSetsList[index];
236 mCurrentStructureSetActor = mStructureSetActorsList[index];
237 mCurrentStructureSetIndex = index;
238 DD(mCurrentStructureSet->GetName());
241 QString Extensions = "Images files ( *.mhd *.hdr *.his)";
242 Extensions += ";;All Files (*)";
243 QStringList filename =
244 QFileDialog::getOpenFileNames(this,tr("Open binary image"),
245 mMainWindowBase->GetInputPathName(),Extensions);
246 if (filename.size() == 0) return;
248 std::vector<int> mLoadedROIIndex;
249 for(int i=0; i<filename.size(); i++) {
250 DD(filename[i].toStdString());
253 //init the progress events
254 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
255 vvImageReader * mReader = new vvImageReader;
256 std::vector<std::string> filenames;
257 filenames.push_back(filename[i].toStdString());
258 mReader->SetInputFilenames(filenames);
259 mReader->Update(IMAGE);
260 QApplication::restoreOverrideCursor();
262 if (mReader->GetLastError().size() != 0) {
263 std::cerr << "Error while reading " << filename[i].toStdString() << std::endl;
264 QString error = "Cannot open file \n";
265 error += mReader->GetLastError().c_str();
266 QMessageBox::information(this,tr("Reading problem"),error);
270 vvImage::Pointer binaryImage = mReader->GetOutput();
274 int dim = mCurrentImage->GetNumberOfDimensions();
276 int bin_dim = binaryImage->GetNumberOfDimensions();
278 if (dim < bin_dim) { ////////// TO CHANGE FOR 3D/4D
279 std::ostringstream os;
280 os << "Error. Loaded binary image is " << bin_dim
281 << "D while selected image is " << dim << "D" << std::endl;
282 QMessageBox::information(this,tr("Reading problem"),os.str().c_str());
286 // Add a new roi to the structure
287 int n = mCurrentStructureSet->AddBinaryImageAsNewROI(binaryImage, filename[i].toStdString());
289 mLoadedROIIndex.push_back(n);
291 mCurrentStructureSet->GetROI(n)->SetBackgroundValueLabelImage(mBackgroundValueSpinBox->value());
293 // Change color NEED DEFAULT COLOR LIST
294 DD(mDefaultLUTColor->GetNumberOfTableValues ());
295 if (n<mDefaultLUTColor->GetNumberOfTableValues ()) {
296 double * color = mDefaultLUTColor->GetTableValue(n % mDefaultLUTColor->GetNumberOfTableValues ());
300 mCurrentStructureSet->GetROI(n)->SetDisplayColor(color[0], color[1], color[2]);
303 // Add a new roi actor
304 mCurrentStructureSetActor->CreateNewROIActor(n);
305 } // end loop on n selected filenames
307 // Update the TreeWidget
308 updateStructureSetInTreeWidget(index, mCurrentStructureSet);
310 // Render loaded ROIs (the first is sufficient)
311 for(unsigned int i=0; i<mLoadedROIIndex.size(); i++) {
312 mCurrentStructureSetActor->GetROIActor(mLoadedROIIndex[i])->Update();
314 for(int i=0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
315 mCurrentSlicerManager->GetSlicer(i)->Render();
318 //------------------------------------------------------------------------------
321 //------------------------------------------------------------------------------
322 void vvToolStructureSetManager::apply() {
325 //------------------------------------------------------------------------------