1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://www.centreleonberard.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ===========================================================================**/
20 #include <QMessageBox>
21 #include <QInputDialog>
23 #include "QTreePushButton.h"
28 #include "vvMainWindow.h"
29 #include "vvHelpDialog.h"
30 #include "vvRegisterForm.h"
31 #include "vvDocumentation.h"
32 #include "vvProgressDialog.h"
33 #include "vvQDicomSeriesSelector.h"
34 #include "vvSlicerManager.h"
35 #include "clitkImageCommon.h"
37 #include "vvInteractorStyleNavigator.h"
38 #include "vvImageWriter.h"
39 #include "vvSegmentationDialog.h"
40 #include "vvSurfaceViewerDialog.h"
41 #include "vvDeformationDialog.h"
42 #include "vvImageWarp.h"
44 #include "vvMidPosition.h"
46 #include "vvStructSelector.h"
47 #include "vvMeshReader.h"
48 #include "clitkConfiguration.h"
52 #include <itkImageFileReader.h>
53 #include <itkByteSwapper.h>
54 #include <itkCommand.h>
55 #include <itkNumericSeriesFileNames.h>
58 #include <vtkImageData.h>
59 #include <vtkImageActor.h>
60 #include <vtkCornerAnnotation.h>
61 #include <vtkRenderWindow.h>
62 #include <vtkRenderWindowInteractor.h>
63 #include <vtkRenderer.h>
64 #include <vtkRendererCollection.h>
65 #include <vtkWindowToImageFilter.h>
66 #include <vtkBMPWriter.h>
67 #include <vtkTIFFWriter.h>
68 #include <vtkPNMWriter.h>
69 #include <vtkPNGWriter.h>
70 #include <vtkJPEGWriter.h>
71 #include <vtkFFMPEGWriter.h>
72 #ifdef VTK_USE_MPEG2_ENCODER
73 #include <vtkMPEG2Writer.h>
75 #include <vtkMatrix4x4.h>
76 #include <vtkTransform.h>
84 #define COLUMN_UL_VIEW 1
85 #define COLUMN_UR_VIEW 2
86 #define COLUMN_DL_VIEW 3
87 #define COLUMN_DR_VIEW 4
88 #define COLUMN_CLOSE_IMAGE 5
89 #define COLUMN_RELOAD_IMAGE 6
90 #define COLUMN_IMAGE_NAME 7
92 #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN )"
95 0,Qt::UserRole full filename
96 1,Qt::CheckStateRole checkbutton UL View
97 1,Qt::UserRole overlay, fusion or vector
98 2,Qt::CheckStateRole checkbutton UR View
99 3,Qt::CheckStateRole checkbutton DL View
100 4,Qt::CheckStateRole checkbutton DR View
102 5,Qt::UserRole mSlicerManager id*/
104 //------------------------------------------------------------------------------
105 vvMainWindow::vvMainWindow():vvMainWindowBase()
107 setupUi(this); // this sets up the GUI
110 mMenuTools = menuTools;
111 // mMenuSegmentation = menuSegmentation;
112 mContextMenu = &contextMenu;
113 mMenuExperimentalTools = menuExperimental;
116 mCurrentSelectedImageId = "";
117 mCurrentPickedImageId = "";
118 mCurrentPickedImageIndex = 0;
120 //Init the contextMenu
121 this->setContextMenuPolicy(Qt::CustomContextMenu);
122 contextActions.resize(0);
123 QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
124 tr("O&pen new Image"));
125 actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
126 connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
127 contextActions.push_back(actionOpen_new_image);
128 contextMenu.addSeparator();
130 QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
131 tr("Close Current Image"));
132 connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
133 contextActions.push_back(actionClose_Image);
135 QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
136 tr("Reload Current Image"));
137 connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
138 contextActions.push_back(actionReload_image);
140 QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
141 tr("Save Current Image"));
142 connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
143 contextActions.push_back(actionSave_image);
145 contextMenu.addSeparator();
147 contextMenu.addAction(actionAdd_VF_to_current_Image);
148 contextActions.push_back(actionAdd_VF_to_current_Image);
150 QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
151 tr("Add overlay image to current image"));
152 contextMenu.addAction(actionAdd_Overlay_to_current_Image);
153 contextActions.push_back(actionAdd_Overlay_to_current_Image);
155 connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
157 contextMenu.addAction(actionAdd_fusion_image);
158 connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
159 contextActions.push_back(actionAdd_fusion_image);
163 QMenu * m = new QMenu(menubar);
165 // m->setObjectName(QString::fromUtf8("TOTOTO"));
166 contextMenu.addMenu(m);
167 QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
169 QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
173 connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
177 mSlicerManagers.resize(0);
187 header.append("Name");
189 DataTree->setHeaderLabels(header);
190 DataTree->resizeColumnToContents(COLUMN_TREE);
191 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
192 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
193 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
194 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
195 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
196 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
197 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
200 documentation = new vvDocumentation();
201 help_dialog = new vvHelpDialog();
202 dicomSeriesSelector = new vvDicomSeriesSelector();
204 inverseButton->setEnabled(0);
205 actionAdd_Overlay_to_current_Image->setEnabled(0);
206 actionSave_As->setEnabled(0);
207 actionAdd_VF_to_current_Image->setEnabled(0);
208 actionAdd_fusion_image->setEnabled(0);
211 verticalSliders.push_back(NOVerticalSlider);
212 verticalSliders.push_back(NEVerticalSlider);
213 verticalSliders.push_back(SOVerticalSlider);
214 verticalSliders.push_back(SEVerticalSlider);
216 for (int i =0; i < 4; i++)
217 verticalSliders[i]->hide();
219 horizontalSliders.push_back(NOHorizontalSlider);
220 horizontalSliders.push_back(NEHorizontalSlider);
221 horizontalSliders.push_back(SOHorizontalSlider);
222 horizontalSliders.push_back(SEHorizontalSlider);
224 for (int i =0; i < 4; i++)
225 horizontalSliders[i]->hide();
228 connect(NOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOVerticalSliderChanged()));
229 connect(NEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEVerticalSliderChanged()));
230 connect(SOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOVerticalSliderChanged()));
231 connect(SEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEVerticalSliderChanged()));
233 connect(NOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOHorizontalSliderMoved()));
234 connect(NEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEHorizontalSliderMoved()));
235 connect(SOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOHorizontalSliderMoved()));
236 connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved()));
239 connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition()));
240 connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration()));
241 connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
242 connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
243 connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
244 connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
245 connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
246 connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
247 connect(actionSlice_Image_As_Multiple_Images,SIGNAL(triggered()),this,SLOT(SliceImages()));
248 connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
249 connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
250 connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
251 connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
252 connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
253 connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
254 connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
255 connect(actionRegister_vv,SIGNAL(triggered()),this,SLOT(PopupRegisterForm()));
257 ///////////////////////////////////////////////
258 connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
259 connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
260 ///////////////////////////////////////////////
262 actionNorth_East_Window->setEnabled(0);
263 actionNorth_West_Window->setEnabled(0);
264 actionSouth_East_Window->setEnabled(0);
265 actionSouth_West_Window->setEnabled(0);
267 connect(actionNorth_East_Window,SIGNAL(triggered()),this,SLOT(SaveNEScreenshot()));
268 connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
269 connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
270 connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
272 connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
273 connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
274 SLOT(DisplayChanged(QTreeWidgetItem*, int)));
276 connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
277 connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
278 connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
279 connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
280 connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
281 connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
282 connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages()));
285 connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
287 connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
288 connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
289 connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double)));
290 connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int)),this,SLOT(SetOverlayProperty(int)));
291 connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,double,double)),
292 this,SLOT(SetFusionProperty(int,int,double,double)));
293 connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
297 playButton->setEnabled(0);
298 frameRateLabel->setEnabled(0);
299 frameRateSpinBox->setEnabled(0);
300 connect(playButton, SIGNAL(clicked()),this,SLOT(PlayPause()));
301 connect(frameRateSpinBox, SIGNAL(valueChanged(int)),this,SLOT(ChangeFrameRate(int)));
303 goToCursorPushButton->setEnabled(0);
304 connect(goToCursorPushButton, SIGNAL(clicked()),this,SLOT(GoToCursor()));
306 NOViewWidget->hide();
307 NEViewWidget->hide();
308 SOViewWidget->hide();
309 SEViewWidget->hide();
311 //Recently opened files
312 std::list<std::string> recent_files = GetRecentlyOpenedImages();
313 recentlyOpenedFilesMenu=NULL;
314 if ( !recent_files.empty() ) {
315 createRecentlyOpenedFilesMenu();
316 updateRecentlyOpenedFilesMenu(recent_files);
319 // Adding all new tools (insertion in the menu)
320 vvToolManager::GetInstance()->InsertToolsInMenu(this);
322 if (!CLITK_EXPERIMENTAL)
323 menuExperimental->menuAction()->setVisible(false);
326 QTimer * timerMemory = new QTimer(this);
327 //timerMemory->setInterval(5);
328 connect(timerMemory, SIGNAL(timeout()), this, SLOT(UpdateMemoryUsage()));
329 timerMemory->start(2000);
331 //------------------------------------------------------------------------------
333 void vvMainWindow::show(){
334 vvMainWindowBase::show();
335 PopupRegisterForm(true);
337 //------------------------------------------------------------------------------
338 void vvMainWindow::UpdateMemoryUsage()
340 // clitk::PrintMemory(true);
341 if (clitk::GetMemoryUsageInMb() == 0) infoPanel->setMemoryInMb("NA");
342 else infoPanel->setMemoryInMb(QString::number(clitk::GetMemoryUsageInMb())+" MiB");
344 //------------------------------------------------------------------------------
347 //------------------------------------------------------------------------------
348 void vvMainWindow::createRecentlyOpenedFilesMenu()
350 recentlyOpenedFilesMenu = new QMenu("Recently opened files...");
351 recentlyOpenedFilesMenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
352 menuFile->insertMenu(actionOpen_Image_With_Time,recentlyOpenedFilesMenu);
353 menuFile->insertSeparator(actionOpen_Image_With_Time);
355 //------------------------------------------------------------------------------
358 //------------------------------------------------------------------------------
360 void vvMainWindow::updateRecentlyOpenedFilesMenu(const std::list<std::string> &recent_files)
362 if(recentlyOpenedFilesMenu==NULL){
363 createRecentlyOpenedFilesMenu();
365 recentlyOpenedFilesMenu->clear();
367 for (std::list<std::string>::const_iterator i = recent_files.begin(); i!=recent_files.end(); i++) {
368 QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")), i->c_str(),this);
369 recentlyOpenedFilesMenu->addAction(current);
370 connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage()));
373 //------------------------------------------------------------------------------
376 //------------------------------------------------------------------------------
377 void vvMainWindow::ComputeMidPosition()
380 int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
381 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
382 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
385 midp.slicer_manager = mSlicerManagers[index];
386 midp.reference_image_index = ref;
387 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
390 QMessageBox::warning(this, "Error computing midposition image",midp.error_message.c_str());
392 QFileInfo info(midp.slicer_manager->GetFileName().c_str());
393 AddImage(midp.output,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_midposition.mhd");
395 QApplication::restoreOverrideCursor();
398 //------------------------------------------------------------------------------
401 //------------------------------------------------------------------------------
402 void vvMainWindow::AddContour(int image_index, vvMesh::Pointer contour, bool propagation)
404 QTreeWidgetItem *item = new QTreeWidgetItem();
405 item->setData(0,Qt::UserRole,"filename.vtk");
406 item->setData(1,Qt::UserRole,tr("contour"));
408 brush.setColor(QColor(contour->r*255,contour->g*255,contour->b*255));
409 brush.setStyle(Qt::SolidPattern);
410 item->setData(COLUMN_IMAGE_NAME,Qt::BackgroundRole,brush);
411 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
413 for (int j = 1; j <= 4; j++)
414 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(image_index)->data(j,Qt::CheckStateRole));
416 QTreePushButton* cButton = new QTreePushButton;
417 cButton->setItem(item);
418 cButton->setColumn(COLUMN_CLOSE_IMAGE);
419 cButton->setToolTip(tr("close image"));
420 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
421 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
422 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
424 QTreePushButton* rButton = new QTreePushButton;
425 rButton->setItem(item);
426 rButton->setColumn(COLUMN_RELOAD_IMAGE);
427 rButton->setToolTip(tr("reload image"));
428 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
429 rButton->setEnabled(false);
431 //connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
432 //this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
434 DataTree->topLevelItem(image_index)->setExpanded(1);
435 DataTree->topLevelItem(image_index)->addChild(item);
436 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
437 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
438 QString id = DataTree->topLevelItem(image_index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
439 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
442 mSlicerManagers[image_index]->AddContour(contour,propagation);
443 mSlicerManagers[image_index]->Render();
445 //------------------------------------------------------------------------------
448 //------------------------------------------------------------------------------
449 void vvMainWindow::OpenVTKContour()
451 if (mSlicerManagers.size() > 0) {
452 QString Extensions = "Images ( *.vtk *.obj)";
453 Extensions += ";;All Files (*)";
454 QString file = QFileDialog::getOpenFileName(this,tr("Open vtkPolyData"),mInputPathName,Extensions);
457 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
458 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
460 reader.SetImage(mSlicerManagers[index]->GetImage());
461 reader.SetModeToVTK();
462 reader.SetFilename(file.toStdString());
464 AddContour(index,reader.GetOutput()[0],false);
465 QApplication::restoreOverrideCursor();
468 //------------------------------------------------------------------------------
471 //------------------------------------------------------------------------------
472 void vvMainWindow::OpenDCStructContour()
474 if (mSlicerManagers.size() > 0) {
475 QString Extensions = "Dicom Files ( *.dcm RS*)";
476 Extensions += ";;All Files (*)";
477 QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
480 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
482 reader.SetFilename(file.toStdString());
483 vvStructSelector selector;
484 selector.SetStructures(reader.GetROINames());
485 if (!mSlicerManagers[index]->GetVF().IsNull())
486 selector.EnablePropagationCheckBox();
487 if (selector.exec()) {
488 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
489 reader.SetSelectedItems(selector.getSelectedItems());
490 reader.SetImage(mSlicerManagers[index]->GetImage());
491 if (selector.PropagationEnabled())
492 reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
494 std::vector<vvMesh::Pointer> contours=reader.GetOutput();
495 for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
496 i!=contours.end(); i++)
497 AddContour(index,*i,selector.PropagationEnabled());
498 QApplication::restoreOverrideCursor();
502 //------------------------------------------------------------------------------
505 //------------------------------------------------------------------------------
506 void vvMainWindow::ComputeDeformableRegistration()
508 if (mSlicerManagers.size() > 0) {
509 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
510 vvDeformationDialog dialog(index,mSlicerManagers);
512 std::string base_name=itksys::SystemTools::GetFilenameWithoutExtension(mSlicerManagers[dialog.GetInputFileIndex()]->GetFileName());
513 AddField(dialog.GetOutput(),dialog.getFieldFile(),dialog.GetInputFileIndex());
514 WarpImage(dialog.GetSelectedSlicer(),dialog.GetReferenceFrameIndex());
516 std::cout << "Error or user cancellation while computing deformation field..." << std::endl;
517 } else QMessageBox::information(this, "Need to open image","You must open an image first.");
519 //------------------------------------------------------------------------------
522 //------------------------------------------------------------------------------
523 void vvMainWindow::WarpImage()
525 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
526 if (!mSlicerManagers[index]->GetVF().IsNull()) {
528 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
529 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
531 WarpImage(mSlicerManagers[index],ref);
534 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field"));
536 //------------------------------------------------------------------------------
539 //------------------------------------------------------------------------------
540 void vvMainWindow::WarpImage(vvSlicerManager* selected_slicer,int reference_phase)
542 if (!selected_slicer->GetVF().IsNull()) {
543 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
544 QFileInfo info(selected_slicer->GetFileName().c_str());
545 vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
546 reference_phase,this);
547 if (warp.ComputeWarpedImage()) {
548 AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
549 AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
550 AddImage(warp.GetJacobianImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_jacobian.mhd");
551 QApplication::restoreOverrideCursor();
553 QApplication::restoreOverrideCursor();
554 QMessageBox::warning(this,tr("Different spacings"),tr("The vector field and image spacings must be the same in order to warp."));
557 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field."));
559 //------------------------------------------------------------------------------
562 //------------------------------------------------------------------------------
563 vvMainWindow::~vvMainWindow()
565 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
566 if (mSlicerManagers[i] != NULL)
567 delete mSlicerManagers[i];
570 //------------------------------------------------------------------------------
572 //------------------------------------------------------------------------------
573 QTabWidget * vvMainWindow::GetTab()
577 //------------------------------------------------------------------------------
580 //------------------------------------------------------------------------------
581 void vvMainWindow::MergeImages()
583 QString Extensions = EXTENSIONS;
584 Extensions += ";;All Files (*)";
585 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images"),mInputPathName,Extensions);
588 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
589 std::vector<std::string> vector;
591 unsigned int currentDim = 0;
592 std::vector<double> currentSpacing;
593 std::vector<int> currentSize;
594 std::vector<double> currentOrigin;
596 for (int i = 0; i < files.size(); i++) {
597 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
598 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
599 reader->SetFileName(files[i].toStdString().c_str());
600 reader->ReadImageInformation();
602 //NOViewWidget->hide();
603 //NEViewWidget->hide();
604 //SOViewWidget->hide();
605 //SEViewWidget->hide();
607 currentDim = reader->GetNumberOfDimensions();
609 for (unsigned int j = 0; j < currentDim; j++) {
612 currentSpacing.resize(currentDim);
613 currentSize.resize(currentDim);
614 currentOrigin.resize(currentDim);
616 currentOrigin[j] = reader->GetOrigin(j);
617 currentSpacing[j] = reader->GetSpacing(j);
618 currentSize[j] = reader->GetDimensions(j);
619 } else if (currentDim != reader->GetNumberOfDimensions()
620 || currentSpacing[j] != reader->GetSpacing(j)
621 || currentSize[j] != (int)reader->GetDimensions(j)
622 || currentOrigin[j] != reader->GetOrigin(j)) {
623 QString error = "Cannot read file (too different from others ";
624 error += files[i].toStdString().c_str();
625 QMessageBox::information(this,tr("Reading problem"),error);
631 vector.push_back(files[i].toStdString());
634 if (vector.size() > 0)
635 LoadImages(vector, vvImageReader::MERGED);
637 //------------------------------------------------------------------------------
639 //------------------------------------------------------------------------------
640 void vvMainWindow::SliceImages()
642 QString Extensions = EXTENSIONS;
643 Extensions += ";;All Files (*)";
645 QStringList files = QFileDialog::getOpenFileNames(this,tr("Slice Images"),mInputPathName,Extensions);
648 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
649 std::vector<std::string> vector;
650 for (int i = 0; i < files.size(); i++)
651 vector.push_back(files[i].toStdString());
652 LoadImages(vector, vvImageReader::SLICED);
654 //------------------------------------------------------------------------------
656 //------------------------------------------------------------------------------
657 void vvMainWindow::MergeImagesWithTime()
659 QString Extensions = EXTENSIONS;
660 Extensions += ";;All Files (*)";
661 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images With Time"),mInputPathName,Extensions);
664 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
665 std::vector<std::string> vector;
667 unsigned int currentDim = 0;
668 std::vector<double> currentSpacing;
669 std::vector<int> currentSize;
670 std::vector<double> currentOrigin;
672 for (int i = 0; i < files.size(); i++) {
673 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
674 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
676 reader->SetFileName(files[i].toStdString().c_str());
677 reader->ReadImageInformation();
679 currentDim = reader->GetNumberOfDimensions();
681 for (unsigned int j = 0; j < currentDim; j++) {
684 currentSpacing.resize(currentDim);
685 currentSize.resize(currentDim);
686 currentOrigin.resize(currentDim);
688 currentOrigin[j] = reader->GetOrigin(j);
689 currentSpacing[j] = reader->GetSpacing(j);
690 currentSize[j] = reader->GetDimensions(j);
691 } else if (currentDim != reader->GetNumberOfDimensions()
692 || currentSpacing[j] != reader->GetSpacing(j)
693 || currentSize[j] != (int)reader->GetDimensions(j)
694 || currentOrigin[j] != reader->GetOrigin(j)) {
695 QString error = "Cannot read file (too different from others ";
696 error += files[i].toStdString().c_str();
697 QMessageBox::information(this,tr("Reading problem"),error);
703 vector.push_back(files[i].toStdString());
705 QString error = "Cannot read file info for ";
706 error += files[i].toStdString().c_str();
708 error += "Maybe you're trying to open an image in an unsupported format?\n";
709 QMessageBox::information(this,tr("Reading problem"),error);
712 sort(vector.begin(),vector.end());
713 if (vector.size() > 1)
714 LoadImages(vector, vvImageReader::MERGEDWITHTIME);
716 QMessageBox::warning(this,tr("Reading problem"),"You need to select at least two images to merge images with time.\nIf you only want to open one image, please use the \"Open Image\" function.");
718 //------------------------------------------------------------------------------
721 //------------------------------------------------------------------------------
722 void vvMainWindow::OpenDicom()
724 std::vector<std::string> files;
726 std::cout << "dicomSeriesSelector " << std::endl;
727 if (dicomSeriesSelector->exec() == QDialog::Accepted) {
728 files = *(dicomSeriesSelector->GetFilenames());
729 LoadImages(files, vvImageReader::DICOM);
732 //------------------------------------------------------------------------------
734 //------------------------------------------------------------------------------
735 void vvMainWindow::OpenImages()
737 QString Extensions = EXTENSIONS;
738 Extensions += ";;All Files (*)";
740 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images"),mInputPathName,Extensions);
743 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
744 std::vector<std::string> vector;
745 for (int i = 0; i < files.size(); i++)
746 vector.push_back(files[i].toStdString());
747 LoadImages(vector, vvImageReader::IMAGE);
749 //------------------------------------------------------------------------------
750 void vvMainWindow::OpenRecentImage()
752 QAction * caller = qobject_cast<QAction*>(sender());
753 std::vector<std::string> images;
754 images.push_back(caller->text().toStdString());
755 mInputPathName = itksys::SystemTools::GetFilenamePath(images[0]).c_str();
756 LoadImages(images, vvImageReader::IMAGE);
758 //------------------------------------------------------------------------------
761 //------------------------------------------------------------------------------
762 void vvMainWindow::OpenImageWithTime()
764 QString Extensions = EXTENSIONS;
765 Extensions += ";;All Files (*)";
767 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images With Time"),mInputPathName,Extensions);
770 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
771 std::vector<std::string> vector;
772 for (int i = 0; i < files.size(); i++) {
773 vector.push_back(files[i].toStdString());
775 LoadImages(vector, vvImageReader::IMAGEWITHTIME);
777 //------------------------------------------------------------------------------
780 //------------------------------------------------------------------------------
781 void vvMainWindow::LoadImages(std::vector<std::string> files, vvImageReader::LoadedImageType filetype)
783 //Separate the way to open images and dicoms
785 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME)
786 fileSize = files.size();
790 // For SLICED, we need the number of slices (ndim and #slices)
791 std::vector<unsigned int> nSlices;
792 nSlices.resize(files.size());
793 std::fill(nSlices.begin(), nSlices.end(), 1);
794 if (filetype == vvImageReader::SLICED) {
795 for (int i = 0; i < fileSize; i++) {
796 itk::ImageIOBase::Pointer header = clitk::readImageHeader(files[i]);
797 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
800 QString error = "Cannot open file \n";
801 error += files[i].c_str();
802 QMessageBox::information(this,tr("Reading problem"),error);
805 if (header->GetNumberOfDimensions() < 3) {
807 QString error = "Dimension problem. Cannot slice \n";
808 error += files[i].c_str();
809 QMessageBox::information(this,tr("Reading problem"),error);
812 nSlices[i] = header->GetDimensions( header->GetNumberOfDimensions()-1 );
816 //Only add to the list of recently opened files when a single file is opened,
817 //to avoid polluting the list of recently opened files
818 if (files.size() == 1) {
819 QFileInfo finfo=tr(files[0].c_str());
820 AddToRecentlyOpenedImages(finfo.absoluteFilePath().toStdString());
821 updateRecentlyOpenedFilesMenu(GetRecentlyOpenedImages());
823 //init the progress events
824 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
825 vvProgressDialog progress("Opening " + files[0],fileSize>1);
826 qApp->processEvents();
828 int numberofsuccesulreads=0;
829 //open images as 1 or multiples
830 for (int i = 0; i < fileSize; i++) {
832 progress.SetText("Opening " + files[i]);
833 progress.SetProgress(i,fileSize);
834 qApp->processEvents();
836 for (unsigned int j = 0; j < nSlices[i]; j++) {
837 //read the image and put it in mSlicerManagers
838 vvSlicerManager* imageManager = new vvSlicerManager(4);
839 qApp->processEvents();
841 bool SetImageSucceed=false;
843 // Change filename if an image with the same already exist
844 int number = GetImageDuplicateFilenameNumber(files[i] + std::string("_slice"));
846 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME || filetype == vvImageReader::SLICED)
847 SetImageSucceed = imageManager->SetImage(files[i],filetype, number, j);
849 SetImageSucceed = imageManager->SetImages(files,filetype, number);
851 if (!SetImageSucceed) {
852 QApplication::restoreOverrideCursor();
853 QString error = "Cannot open file \n";
854 error += imageManager->GetLastError().c_str();
855 QMessageBox::information(this,tr("Reading problem"),error);
858 mSlicerManagers.push_back(imageManager);
860 //create an item in the tree with good settings
861 QTreeWidgetItem *item = new QTreeWidgetItem();
862 item->setData(0,Qt::UserRole,files[i].c_str());
863 QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
864 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
865 item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
866 qApp->processEvents();
868 //Create the buttons for reload and close
869 qApp->processEvents();
870 QTreePushButton* cButton = new QTreePushButton;
871 cButton->setItem(item);
872 cButton->setColumn(COLUMN_CLOSE_IMAGE);
873 cButton->setToolTip(tr("close image"));
874 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
875 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
876 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
878 QTreePushButton* rButton = new QTreePushButton;
879 rButton->setItem(item);
880 rButton->setColumn(COLUMN_RELOAD_IMAGE);
881 rButton->setToolTip(tr("reload image"));
882 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
883 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
884 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
886 DataTree->addTopLevelItem(item);
887 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
888 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
890 //set the id of the image
891 QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
892 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
893 mSlicerManagers.back()->SetId(id.toStdString());
895 linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
897 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
898 this,SLOT(CurrentImageChanged(std::string)));
899 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
900 this, SLOT(CurrentPickedImageChanged(std::string)));
901 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
902 this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
903 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
904 this, SLOT(VectorChanged(int,double,double,double, double)));
905 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
906 this, SLOT(OverlayChanged(int,double,double)));
907 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
908 this, SLOT(FusionChanged(int,double)));
909 connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
910 this,SLOT(WindowsChanged(int, int, int)));
911 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
912 this,SLOT(WindowLevelChanged(double, double, int, int)));
913 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
914 this,SLOT(UpdateSlice(int,int)));
915 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
916 this,SLOT(UpdateTSlice(int, int)));
917 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
918 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
919 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
920 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
921 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
922 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
923 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
924 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
925 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
927 numberofsuccesulreads++;
931 if (numberofsuccesulreads) {
932 NOViewWidget->show();
933 NEViewWidget->show();
934 SOViewWidget->show();
935 SEViewWidget->show();
940 // Try to guess default WindowLevel
942 mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
943 if ((range[0] == 0) && (range[1] == 1)) {
944 presetComboBox->setCurrentIndex(5);// binary
949 QApplication::restoreOverrideCursor();
951 //------------------------------------------------------------------------------
953 //------------------------------------------------------------------------------
954 void vvMainWindow::UpdateTree()
956 DataTree->resizeColumnToContents(COLUMN_TREE);
957 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
958 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
959 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
960 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
961 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
962 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
963 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
965 //------------------------------------------------------------------------------
967 //------------------------------------------------------------------------------
968 void vvMainWindow::CurrentImageChanged(std::string id)
970 if (id == mCurrentSelectedImageId) return; // Do nothing
972 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
973 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
976 DataTree->topLevelItem(i)->setSelected(0);
978 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
979 DataTree->topLevelItem(i)->child(child)->setSelected(0);
982 DataTree->topLevelItem(selected)->setSelected(1);
983 mCurrentSelectedImageId = id;
984 emit SelectedImageHasChanged(mSlicerManagers[selected]);
986 //------------------------------------------------------------------------------
988 //------------------------------------------------------------------------------
989 void vvMainWindow::CurrentPickedImageChanged(std::string id)
991 if (id == mCurrentPickedImageId) return; // Do nothing
993 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
994 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
997 DataTree->topLevelItem(i)->setSelected(0);
999 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
1000 DataTree->topLevelItem(i)->child(child)->setSelected(0);
1003 DataTree->topLevelItem(selected)->setSelected(1);
1004 mCurrentPickedImageId = id;
1005 mCurrentPickedImageIndex = selected;
1007 //------------------------------------------------------------------------------
1009 //------------------------------------------------------------------------------
1010 void vvMainWindow::ImageInfoChanged()
1012 contextActions[6]->setEnabled(1);
1013 contextActions[5]->setEnabled(1);
1014 actionSave_As->setEnabled(1);
1015 actionAdd_VF_to_current_Image->setEnabled(1);
1016 actionAdd_fusion_image->setEnabled(1);
1017 actionNorth_East_Window->setEnabled(1);
1018 actionNorth_West_Window->setEnabled(1);
1019 actionSouth_East_Window->setEnabled(1);
1020 actionSouth_West_Window->setEnabled(1);
1021 inverseButton->setEnabled(1);
1023 goToCursorPushButton->setEnabled(1);
1025 if (DataTree->selectedItems().size()) {
1026 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1028 colorMapComboBox->setEnabled(1);
1029 for (int i = 0; i < DataTree->topLevelItem(index)->childCount(); i++) {
1030 if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
1031 DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion") {
1032 colorMapComboBox->setEnabled(0);
1037 std::vector<double> origin;
1038 std::vector<double> inputSpacing;
1039 std::vector<int> inputSize;
1040 std::vector<double> sizeMM;
1041 vtkSmartPointer<vtkMatrix4x4> transformation;
1044 QString inputSizeInBytes;
1045 QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1047 if (mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size() > 1 || playMode == 1) {
1048 playButton->setEnabled(1);
1049 frameRateLabel->setEnabled(1);
1050 frameRateSpinBox->setEnabled(1);
1052 playButton->setEnabled(0);
1053 frameRateLabel->setEnabled(0);
1054 frameRateSpinBox->setEnabled(0);
1060 vvImage::Pointer imageSelected;
1061 if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
1062 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1063 dimension = imageSelected->GetNumberOfDimensions();
1064 origin.resize(dimension);
1065 inputSpacing.resize(dimension);
1066 inputSize.resize(dimension);
1067 sizeMM.resize(dimension);
1068 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1069 for (int i = 0; i < dimension; i++) {
1070 origin[i] = imageSelected->GetOrigin()[i];
1071 inputSpacing[i] = imageSelected->GetSpacing()[i];
1072 inputSize[i] = imageSelected->GetSize()[i];
1073 sizeMM[i] = inputSize[i]*inputSpacing[i];
1074 NPixel *= inputSize[i];
1076 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1077 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
1078 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
1079 dimension = imageSelected->GetNumberOfDimensions();
1080 origin.resize(dimension);
1081 inputSpacing.resize(dimension);
1082 inputSize.resize(dimension);
1083 sizeMM.resize(dimension);
1084 pixelType = mSlicerManagers[index]->GetVF()->GetScalarTypeAsITKString().c_str();
1085 for (int i = 0; i < dimension; i++) {
1086 origin[i] = imageSelected->GetOrigin()[i];
1087 inputSpacing[i] = imageSelected->GetSpacing()[i];
1088 inputSize[i] = imageSelected->GetSize()[i];
1089 sizeMM[i] = inputSize[i]*inputSpacing[i];
1090 NPixel *= inputSize[i];
1092 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1093 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
1094 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
1095 dimension = imageSelected->GetNumberOfDimensions();
1096 origin.resize(dimension);
1097 inputSpacing.resize(dimension);
1098 inputSize.resize(dimension);
1099 sizeMM.resize(dimension);
1100 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1101 for (int i = 0; i < dimension; i++) {
1102 origin[i] = imageSelected->GetOrigin()[i];
1103 inputSpacing[i] = imageSelected->GetSpacing()[i];
1104 inputSize[i] = imageSelected->GetSize()[i];
1105 sizeMM[i] = inputSize[i]*inputSpacing[i];
1106 NPixel *= inputSize[i];
1108 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1109 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
1110 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
1111 dimension = imageSelected->GetNumberOfDimensions();
1112 origin.resize(dimension);
1113 inputSpacing.resize(dimension);
1114 inputSize.resize(dimension);
1115 sizeMM.resize(dimension);
1116 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1117 for (int i = 0; i < dimension; i++) {
1118 origin[i] = imageSelected->GetOrigin()[i];
1119 inputSpacing[i] = imageSelected->GetSpacing()[i];
1120 inputSize[i] = imageSelected->GetSize()[i];
1121 sizeMM[i] = inputSize[i]*inputSpacing[i];
1122 NPixel *= inputSize[i];
1124 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1127 QString dim = QString::number(dimension) + " (";
1128 dim += pixelType + ")";
1130 infoPanel->setFileName(image);
1131 infoPanel->setDimension(dim);
1132 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1133 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1134 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1135 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1136 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1137 transformation = imageSelected->GetTransform()->GetMatrix();
1138 infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
1140 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1141 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1142 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1143 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1145 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1146 for (int i = 0; i < 4; i++) {
1147 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1148 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1152 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1153 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1154 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1155 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1157 infoPanel->setFileName(image);
1158 infoPanel->setDimension(dim);
1159 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1160 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1161 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1162 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1163 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1165 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1166 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1167 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1168 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1170 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1171 for (int i = 0; i < 4; i++) {
1172 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1173 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1177 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1178 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1179 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1180 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1182 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
1183 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1184 overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
1185 mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
1186 mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
1188 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1189 overlayPanel->getVFProperty(-1,-1,-1);
1191 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
1192 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1193 overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor());
1195 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1196 overlayPanel->getOverlayProperty(-1);
1198 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
1199 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1200 overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
1201 mSlicerManagers[index]->GetFusionColorMap(),
1202 mSlicerManagers[index]->GetFusionWindow(),
1203 mSlicerManagers[index]->GetFusionLevel());
1205 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1206 overlayPanel->getFusionProperty(-1, -1,-1,-1);
1210 //------------------------------------------------------------------------------
1212 //------------------------------------------------------------------------------
1213 void vvMainWindow::ShowDocumentation()
1215 documentation->show();
1217 //------------------------------------------------------------------------------
1219 //------------------------------------------------------------------------------
1220 void vvMainWindow::PopupRegisterForm(bool checkCanPush)
1222 vvRegisterForm* registerForm = new vvRegisterForm(QUrl("http://www.creatis.insa-lyon.fr/~dsarrut/vvregister/write.php"), getVVSettingsPath(), getSettingsOptionFormat());
1224 registerForm->show();
1226 if(registerForm->canPush()){
1227 registerForm->show();
1228 registerForm->acquitPushed();//too bad if there is not internet connection anymore.
1232 //------------------------------------------------------------------------------
1234 //------------------------------------------------------------------------------
1235 void vvMainWindow::ShowHelpDialog()
1237 help_dialog->show();
1239 //------------------------------------------------------------------------------
1241 //------------------------------------------------------------------------------
1242 void vvMainWindow::ChangeViewMode()
1245 if (viewMode == 1) {
1249 splitter_3->setSizes(size);
1250 OSplitter->setSizes(size);
1251 DataTree->setColumnHidden(2,1);
1252 DataTree->setColumnHidden(3,1);
1253 DataTree->setColumnHidden(4,1);
1258 splitter_3->setSizes(size);
1259 OSplitter->setSizes(size);
1260 DataTree->setColumnHidden(2,0);
1261 DataTree->setColumnHidden(3,0);
1262 DataTree->setColumnHidden(4,0);
1264 UpdateRenderWindows();
1266 ** I don't know why but for both resized QVTKWidget we also need to render
1267 ** the associated Slicer to redraw crosses.
1269 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
1271 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
1272 mSlicerManagers[i]->GetSlicer(0)->Render();
1273 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
1274 mSlicerManagers[i]->GetSlicer(2)->Render();
1277 //------------------------------------------------------------------------------
1279 //------------------------------------------------------------------------------
1280 QString vvMainWindow::GetSizeInBytes(unsigned long size)
1282 QString result = "";// QString::number(size);
1283 //result += " bytes (";
1284 if (size > 1000000000) {
1286 result += QString::number(size);
1287 result += "Gb";//)";
1288 } else if (size > 1000000) {
1290 result += QString::number(size);
1291 result += "Mb";//)";
1292 } else if (size > 1000) {
1294 result += QString::number(size);
1295 result += "kb";//)";
1299 //------------------------------------------------------------------------------
1301 //------------------------------------------------------------------------------
1302 QString vvMainWindow::Get4x4MatrixDoubleAsString(vtkSmartPointer<vtkMatrix4x4> matrix)
1304 std::ostringstream strmatrix;
1306 for (unsigned int i = 0; i < 4; i++) {
1307 for (unsigned int j = 0; j < 4; j++) {
1308 strmatrix.flags(ios::showpos);
1309 strmatrix.width(10);
1310 strmatrix.precision(3);
1311 strmatrix.setf(ios::fixed,ios::floatfield);
1312 strmatrix.fill(' ');
1313 strmatrix << std::left << matrix->GetElement(i, j);
1314 //strmatrix.width(10);
1317 strmatrix << std::endl;
1319 QString result = strmatrix.str().c_str();
1322 //------------------------------------------------------------------------------
1324 //------------------------------------------------------------------------------
1325 QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble)
1328 for (unsigned int i= 0; i < vectorDouble.size(); i++) {
1331 result += QString::number(vectorDouble[i]);
1335 //------------------------------------------------------------------------------
1337 //------------------------------------------------------------------------------
1338 QString vvMainWindow::GetVectorIntAsString(std::vector<int> vectorInt)
1341 for (unsigned int i= 0; i < vectorInt.size(); i++) {
1344 result += QString::number(vectorInt[i]);
1348 //------------------------------------------------------------------------------
1350 //------------------------------------------------------------------------------
1351 int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item)
1353 QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1354 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1355 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1360 //------------------------------------------------------------------------------
1362 //------------------------------------------------------------------------------
1363 QTreeWidgetItem* vvMainWindow::GetItemFromSlicerManager(vvSlicerManager* sm)
1365 QString id = sm->GetId().c_str();
1366 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1367 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1368 return DataTree->topLevelItem(i);
1372 //------------------------------------------------------------------------------
1374 //------------------------------------------------------------------------------
1375 void vvMainWindow::DisplayChanged(QTreeWidgetItem *clicked_item, int column)
1377 int index = GetSlicerIndexFromItem(clicked_item);
1378 if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
1380 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1381 //Trick to avoid redoing twice the job for a key (sr)
1382 mSlicerManagers[i]->GetSlicer(column-1)->GetRenderWindow()-> GetInteractor()->SetKeySym("Crap");
1384 QTreeWidgetItem* current_row=DataTree->topLevelItem(i);
1385 if (DataTree->topLevelItem(index) == current_row) {
1386 vvSlicer* clicked_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1387 if (current_row == clicked_item) {
1388 //If we just activated a slicer
1389 if (current_row->data(column,Qt::CheckStateRole).toInt() > 0) {
1390 mSlicerManagers[i]->UpdateSlicer(column-1,clicked_item->data(column,Qt::CheckStateRole).toInt());
1391 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1392 DisplaySliders(i,column-1);
1393 std::map<std::string,int> overlay_counts;
1394 for (int child = 0; child < current_row->childCount(); child++) {
1395 std::string overlay_type =
1396 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1397 overlay_counts[overlay_type]++;
1398 current_row->child(child)->setData(column,Qt::CheckStateRole,
1399 current_row->data(column,Qt::CheckStateRole));
1400 clicked_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,true);
1402 } else { //We don't allow simply desactivating a slicer
1403 clicked_item->setData(column,Qt::CheckStateRole,2);
1407 //if we clicked on the vector(or overlay) and not the image
1409 if (clicked_item->data(column,Qt::CheckStateRole).toInt()) {
1410 current_row->setData(column,Qt::CheckStateRole,2);
1411 mSlicerManagers[i]->UpdateSlicer(column-1,2);
1412 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1413 DisplaySliders(i,column-1);
1415 int vis = clicked_item->data(column,Qt::CheckStateRole).toInt();
1416 std::string overlay_type = clicked_item->data(1,Qt::UserRole).toString().toStdString();
1417 int overlay_index=0;
1418 for (int child = 0; child < current_row->childCount(); child++) {
1419 if (current_row->child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1421 if (current_row->child(child) == clicked_item) break;
1423 clicked_slicer->SetActorVisibility(
1424 clicked_item->data(1,Qt::UserRole).toString().toStdString(), overlay_index-1,vis);
1426 } else if (current_row->data(column,Qt::CheckStateRole).toInt() > 0) {
1427 current_row->setData(column,Qt::CheckStateRole,0);
1428 mSlicerManagers[i]->UpdateSlicer(column-1,0);
1429 std::map<std::string,int> overlay_counts;
1430 for (int child = 0; child < current_row->childCount(); child++) {
1431 std::string overlay_type =
1432 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1433 overlay_counts[overlay_type]++;
1434 current_row->child(child)->setData(column,Qt::CheckStateRole,0);
1435 vvSlicer * current_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1436 current_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,false);
1439 //mSlicerManagers[i]->SetColorMap(-1);
1440 mSlicerManagers[i]->SetColorMap();
1442 mSlicerManagers[index]->GetSlicer(column-1)->Render();
1444 //------------------------------------------------------------------------------
1446 void vvMainWindow::InitSlicers()
1448 if (mSlicerManagers.size()) {
1449 mSlicerManagers.back()->GenerateDefaultLookupTable();
1451 mSlicerManagers.back()->SetSlicerWindow(0,NOViewWidget->GetRenderWindow());
1452 mSlicerManagers.back()->SetSlicerWindow(1,NEViewWidget->GetRenderWindow());
1453 mSlicerManagers.back()->SetSlicerWindow(2,SOViewWidget->GetRenderWindow());
1454 mSlicerManagers.back()->SetSlicerWindow(3,SEViewWidget->GetRenderWindow());
1458 //------------------------------------------------------------------------------
1459 void vvMainWindow::InitDisplay()
1461 if (mSlicerManagers.size()) {
1462 //BE CAREFUL : this is absolutely necessary to set the interactor style
1463 //in order to have the same style instanciation for all SlicerManagers in
1465 for (int j = 0; j < 4; j++) {
1466 vvInteractorStyleNavigator* style = vvInteractorStyleNavigator::New();
1467 style->SetAutoAdjustCameraClippingRange(1);
1468 bool AlreadySelected = false;
1469 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1470 mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
1472 //select the image only if previous are not selected
1473 if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1) {
1474 mSlicerManagers[i]->UpdateSlicer(j,1);
1475 AlreadySelected = true;
1476 } else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected) {
1477 if (DataTree->selectedItems().size() == 0)
1478 DataTree->topLevelItem(i)->setSelected(1);
1479 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
1480 mSlicerManagers[i]->UpdateSlicer(j,1);
1481 DisplaySliders(i,j);
1483 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,0);
1484 mSlicerManagers[i]->UpdateSlicer(j,0);
1491 //------------------------------------------------------------------------------
1493 //------------------------------------------------------------------------------
1494 void vvMainWindow::DisplaySliders(int slicer, int window)
1497 mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
1498 int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
1502 tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
1503 int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetTSlice();
1504 bool showHorizontal = false;
1505 bool showVertical = false;
1506 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1507 || (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 2
1508 && mSlicerManagers[slicer]->GetType() != vvImageReader::IMAGEWITHTIME
1509 && mSlicerManagers[slicer]->GetType() != vvImageReader::MERGEDWITHTIME))
1510 showVertical = true;
1511 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1512 || mSlicerManagers[slicer]->GetType() == vvImageReader::IMAGEWITHTIME
1513 || mSlicerManagers[slicer]->GetType() == vvImageReader::MERGEDWITHTIME)
1514 showHorizontal = true;
1517 verticalSliders[window]->show();
1519 verticalSliders[window]->hide();
1520 verticalSliders[window]->setRange(range[0],range[1]);
1521 verticalSliders[window]->setValue(position);
1524 horizontalSliders[window]->show();
1526 horizontalSliders[window]->hide();
1527 horizontalSliders[window]->setRange(tRange[0],tRange[1]);
1528 horizontalSliders[window]->setValue(tPosition);
1530 //------------------------------------------------------------------------------
1532 //------------------------------------------------------------------------------
1533 void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column)
1535 int index = GetSlicerIndexFromItem(item);
1537 if (DataTree->topLevelItem(index) != item) {
1538 QString warning = "Do you really want to close the overlay : ";
1539 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1540 QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
1542 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1543 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1544 if (msgBox.exec() == QMessageBox::AcceptRole) {
1545 std::string overlay_type=item->data(1,Qt::UserRole).toString().toStdString();
1546 int overlay_index=0;
1547 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++) {
1548 if (DataTree->topLevelItem(index)->\
1549 child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1551 if (DataTree->topLevelItem(index)->child(child) == item) break;
1553 mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
1554 mSlicerManagers[index]->SetColorMap(0);
1555 DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
1556 mSlicerManagers[index]->Render();
1558 } else if (DataTree->topLevelItemCount() <= 1) {
1559 QString warning = "Do you really want to close the image : ";
1560 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1561 warning += "\nThis is the last image, you're about to close vv !!!";
1562 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1564 msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
1565 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1566 if (msgBox.exec() == QMessageBox::AcceptRole) {
1570 QString warning = "Do you really want to close the image : ";
1571 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1572 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1574 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1575 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1576 if (msgBox.exec() == QMessageBox::AcceptRole) {
1578 // Tell tools that we close an image
1579 emit AnImageIsBeingClosed(mSlicerManagers[index]);
1581 std::vector<vvSlicerManager*>::iterator Manageriter = mSlicerManagers.begin();
1582 DataTree->takeTopLevelItem(index);
1583 for (int i = 0; i < index; i++) {
1586 linkPanel->removeImage(index);
1587 mSlicerManagers[index]->RemoveActors();
1588 delete mSlicerManagers[index];
1589 mSlicerManagers.erase(Manageriter);
1597 //------------------------------------------------------------------------------
1599 //------------------------------------------------------------------------------
1600 void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column)
1602 // int index = GetSlicerIndexFromItem(item);
1603 // QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1604 // if (item->data(1,Qt::UserRole).toString() == "vector")
1605 // mSlicerManagers[index]->ReloadVF();
1607 // mSlicerManagers[index]->Reload();
1609 // QApplication::restoreOverrideCursor();
1610 int index = GetSlicerIndexFromItem(item);
1611 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1612 QString role=item->data(1,Qt::UserRole).toString();
1613 if ( role == "vector")
1614 mSlicerManagers[index]->ReloadVF();
1615 else if (role == "overlay")
1616 mSlicerManagers[index]->ReloadOverlay();
1617 else if (role == "fusion")
1618 mSlicerManagers[index]->ReloadFusion();
1620 mSlicerManagers[index]->Reload();
1622 // Update view and info
1624 mSlicerManagers[index]->Render();
1625 QApplication::restoreOverrideCursor();
1627 //------------------------------------------------------------------------------
1629 //------------------------------------------------------------------------------
1630 void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value)
1632 infoPanel->setCurrentInfo(visibility,x,y,z,X,Y,Z,value);
1634 //------------------------------------------------------------------------------
1636 //------------------------------------------------------------------------------
1637 void vvMainWindow::VectorChanged(int visibility,double x, double y, double z, double value)
1639 overlayPanel->getCurrentVectorInfo(visibility,x,y,z,value);
1641 //------------------------------------------------------------------------------
1643 //------------------------------------------------------------------------------
1644 void vvMainWindow::OverlayChanged(int visibility, double valueOver, double valueRef)
1646 overlayPanel->getCurrentOverlayInfo(visibility,valueOver, valueRef);
1648 //------------------------------------------------------------------------------
1650 //------------------------------------------------------------------------------
1651 void vvMainWindow::FusionChanged(int visibility, double value)
1653 overlayPanel->getCurrentFusionInfo(visibility,value);
1655 //------------------------------------------------------------------------------
1657 //------------------------------------------------------------------------------
1658 void vvMainWindow::WindowsChanged(int window, int view, int slice)
1660 infoPanel->setViews(window, view, slice);
1662 //------------------------------------------------------------------------------
1664 //------------------------------------------------------------------------------
1665 void vvMainWindow::WindowLevelChanged(double window, double level,int preset,int colormap)
1667 windowSpinBox->setValue(window);
1668 levelSpinBox->setValue(level);
1669 colorMapComboBox->setCurrentIndex(colormap);
1670 presetComboBox->setCurrentIndex(preset);
1672 //------------------------------------------------------------------------------
1674 //------------------------------------------------------------------------------
1675 void vvMainWindow::WindowLevelEdited()
1677 presetComboBox->setCurrentIndex(6);
1678 UpdateWindowLevel();
1680 //------------------------------------------------------------------------------
1682 //------------------------------------------------------------------------------
1683 void vvMainWindow::UpdateWindowLevel()
1685 if (DataTree->selectedItems().size()) {
1686 if (presetComboBox->currentIndex() == 7) //For ventilation
1687 colorMapComboBox->setCurrentIndex(5);
1688 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1689 mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
1690 mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
1691 mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
1692 mSlicerManagers[index]->Render();
1693 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1694 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1697 //------------------------------------------------------------------------------
1699 //------------------------------------------------------------------------------
1700 void vvMainWindow::UpdateColorMap()
1702 if (DataTree->selectedItems().size()) {
1703 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1704 mSlicerManagers[index]->SetColorMap(colorMapComboBox->currentIndex());
1705 mSlicerManagers[index]->Render();
1708 //------------------------------------------------------------------------------
1709 void vvMainWindow::SwitchWindowLevel()
1711 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1712 int window = mSlicerManagers[index]->GetColorWindow();
1713 presetComboBox->setCurrentIndex(6);
1714 windowSpinBox->setValue(-window);
1715 UpdateWindowLevel();
1717 //------------------------------------------------------------------------------
1719 //------------------------------------------------------------------------------
1720 void vvMainWindow::ApplyWindowLevelToAllImages()
1722 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1723 if (mSlicerManagers[i] == NULL)
1725 mSlicerManagers[i]->SetColorWindow(windowSpinBox->value());
1726 mSlicerManagers[i]->SetColorLevel(levelSpinBox->value());
1727 mSlicerManagers[i]->SetPreset(6);
1728 mSlicerManagers[i]->Render();
1731 //------------------------------------------------------------------------------
1733 //------------------------------------------------------------------------------
1734 void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
1736 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1737 if (mSlicerManagers[i]->GetId() == id) {
1738 //mSlicerManagers[i]->SetTSlice(temps);
1739 mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
1740 mSlicerManagers[i]->UpdateViews(0,slicer);
1745 //------------------------------------------------------------------------------
1747 //------------------------------------------------------------------------------
1748 void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm, vvSlicer* refSlicer)
1750 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1751 if (id == mSlicerManagers[i]->GetId()) {
1752 mSlicerManagers[i]->UpdateLinkedNavigation(refSlicer);
1756 //------------------------------------------------------------------------------
1758 //------------------------------------------------------------------------------
1759 void vvMainWindow::ShowContextMenu(QPoint point)
1761 if (!DataTree->selectedItems().size()) {
1762 contextActions[1]->setEnabled(0);
1763 contextActions[2]->setEnabled(0);
1764 contextActions[3]->setEnabled(0);
1765 contextActions[4]->setEnabled(0);
1766 contextActions[5]->setEnabled(0);
1767 contextActions[6]->setEnabled(0);
1769 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1770 contextActions[1]->setEnabled(1);
1771 contextActions[2]->setEnabled(
1772 DataTree->itemWidget(DataTree->selectedItems()[0],
1773 COLUMN_RELOAD_IMAGE)->isEnabled());
1774 contextActions[3]->setEnabled(1);
1775 contextActions[5]->setEnabled(1);
1776 contextActions[6]->setEnabled(1);
1778 if (mSlicerManagers[index]->GetDimension() < 3)
1779 contextActions[4]->setEnabled(0);
1781 contextActions[4]->setEnabled(1);
1783 contextMenu.exec(QCursor::pos());
1785 //------------------------------------------------------------------------------
1787 //------------------------------------------------------------------------------
1788 void vvMainWindow::CloseImage()
1790 CloseImage(DataTree->selectedItems()[0],0);
1792 //------------------------------------------------------------------------------
1794 //------------------------------------------------------------------------------
1795 void vvMainWindow::ReloadImage()
1797 ReloadImage(DataTree->selectedItems()[0],0);
1799 //------------------------------------------------------------------------------
1801 //------------------------------------------------------------------------------
1802 void vvMainWindow::SelectOverlayImage()
1804 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1806 //check if one overlay image is added
1807 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1808 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay") {
1809 QString error = "Cannot add more than one compared image\n";
1810 error += "Please remove first ";
1811 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1812 QMessageBox::information(this,tr("Problem adding compared image !"),error);
1816 QString Extensions = EXTENSIONS;
1817 Extensions += ";;All Files (*)";
1818 QString file = QFileDialog::getOpenFileName(this,tr("Load Overlay image"),mInputPathName,Extensions);
1819 if (!file.isEmpty())
1820 AddOverlayImage(index,file);
1822 //------------------------------------------------------------------------------
1824 //------------------------------------------------------------------------------
1825 void vvMainWindow::AddOverlayImage(int index, QString file)
1828 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1829 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1830 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1831 reader->SetFileName(file.toStdString().c_str());
1832 reader->ReadImageInformation();
1833 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1834 int dimension = reader->GetNumberOfDimensions();
1835 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1836 vvProgressDialog progress("Opening " + file.toStdString());
1837 qApp->processEvents();
1839 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1840 if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component)) {
1841 //create an item in the tree with good settings
1842 QTreeWidgetItem *item = new QTreeWidgetItem();
1843 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1844 item->setData(1,Qt::UserRole,tr("overlay"));
1845 QFileInfo fileinfo(file); //Do not show the path
1846 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
1847 item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
1848 qApp->processEvents();
1850 for (int j = 1; j <= 4; j++) {
1851 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1852 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("overlay",0,
1853 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1856 //Create the buttons for reload and close
1857 qApp->processEvents();
1858 QTreePushButton* cButton = new QTreePushButton;
1859 cButton->setItem(item);
1860 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1861 cButton->setToolTip(tr("close image"));
1862 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1863 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1864 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1866 QTreePushButton* rButton = new QTreePushButton;
1867 rButton->setItem(item);
1868 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1869 rButton->setToolTip(tr("reload image"));
1870 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1871 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1872 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1874 DataTree->topLevelItem(index)->setExpanded(1);
1875 DataTree->topLevelItem(index)->addChild(item);
1876 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1877 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1879 //set the id of the image
1880 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1881 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1883 qApp->processEvents();
1885 QApplication::restoreOverrideCursor();
1887 QApplication::restoreOverrideCursor();
1888 QString error = "Cannot import the new image.\n";
1889 error += mSlicerManagers[index]->GetLastError().c_str();
1890 QMessageBox::information(this,tr("Problem reading image !"),error);
1893 //------------------------------------------------------------------------------
1896 //------------------------------------------------------------------------------
1897 void vvMainWindow::AddROI(int index, QString file)
1900 // Get slice manager
1904 vvImageReader * mReader = new vvImageReader;
1905 mReader->SetInputFilename(filename.toStdString());
1906 mReader->Update(IMAGE);
1907 if (mReader->GetLastError().size() != 0) {
1908 std::cerr << "Error while reading " << filename.toStdString() << std::endl;
1909 QString error = "Cannot open file \n";
1910 error += mReader->GetLastError().c_str();
1911 QMessageBox::information(this,tr("Reading problem"),error);
1915 vvImage::Pointer roi = mReader->GetOutput();
1917 // Create roi in new tool
1918 vvToolStructureSetManager::AddImage(mCurrentSlicerManager, roi);
1921 //------------------------------------------------------------------------------
1923 //------------------------------------------------------------------------------
1924 void vvMainWindow::SelectFusionImage()
1926 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1928 //check if one fusion image is added
1929 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1930 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") {
1931 QString error = "Cannot add more than one fusion image\n";
1932 error += "Please remove first ";
1933 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1934 QMessageBox::information(this,tr("Problem adding fusion image !"),error);
1938 QString Extensions = EXTENSIONS;
1939 Extensions += ";;All Files (*)";
1940 QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
1941 if (!file.isEmpty())
1942 AddFusionImage(index,file);
1944 //------------------------------------------------------------------------------
1946 //------------------------------------------------------------------------------
1947 void vvMainWindow::AddFusionImage(int index, QString file)
1949 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1950 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1951 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1952 reader->SetFileName(file.toStdString().c_str());
1953 reader->ReadImageInformation();
1954 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1956 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1957 vvProgressDialog progress("Opening fusion");
1958 qApp->processEvents();
1960 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1961 if (mSlicerManagers[index]->SetFusion(file.toStdString(),
1962 reader->GetNumberOfDimensions(), component)) {
1963 //create an item in the tree with good settings
1964 QTreeWidgetItem *item = new QTreeWidgetItem();
1965 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1966 item->setData(1,Qt::UserRole,tr("fusion"));
1967 QFileInfo fileinfo(filename.c_str()); //Do not show the path
1968 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
1969 item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
1970 qApp->processEvents();
1972 for (int j = 1; j <= 4; j++) {
1973 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1974 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0,
1975 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1978 //Create the buttons for reload and close
1979 qApp->processEvents();
1980 QTreePushButton* cButton = new QTreePushButton;
1981 cButton->setItem(item);
1982 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1983 cButton->setToolTip(tr("close image"));
1984 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1985 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1986 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1988 QTreePushButton* rButton = new QTreePushButton;
1989 rButton->setItem(item);
1990 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1991 rButton->setToolTip(tr("reload image"));
1992 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1993 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1994 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1996 DataTree->topLevelItem(index)->setExpanded(1);
1997 DataTree->topLevelItem(index)->addChild(item);
1998 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1999 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2001 //set the id of the image
2002 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2003 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2005 qApp->processEvents();
2007 QApplication::restoreOverrideCursor();
2009 QApplication::restoreOverrideCursor();
2010 QString error = "Cannot import the new image.\n";
2011 error += mSlicerManagers[index]->GetLastError().c_str();
2012 QMessageBox::information(this,tr("Problem reading image !"),error);
2015 QString error = "Cannot import the new image.\n";
2016 QMessageBox::information(this,tr("Problem reading image !"),error);
2019 //------------------------------------------------------------------------------
2022 //------------------------------------------------------------------------------
2023 void vvMainWindow::OpenField()
2025 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2026 //check if a vector field has already been added
2027 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
2028 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector") {
2029 QString error = "Cannot add more than one vector field\n";
2030 error += "Please remove first ";
2031 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
2032 QMessageBox::information(this,tr("Problem adding vector field!"),error);
2036 QString Extensions = "Images ( *.mhd)";
2037 Extensions += ";;Images ( *.vf)";
2038 QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
2039 if (!file.isEmpty())
2040 AddField(file,index);
2042 //------------------------------------------------------------------------------
2045 //------------------------------------------------------------------------------
2046 void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
2048 //create an item in the tree with good settings
2049 QTreeWidgetItem *item = new QTreeWidgetItem();
2050 item->setData(0,Qt::UserRole,filename.toStdString().c_str());
2051 item->setData(1,Qt::UserRole,tr("vector"));
2052 QFileInfo fileinfo(filename); //Do not show the path
2053 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
2054 item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
2055 qApp->processEvents();
2057 for (int j = 1; j <= 4; j++) {
2058 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2059 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("vector",0,
2060 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
2063 //Create the buttons for reload and close
2064 qApp->processEvents();
2065 QTreePushButton* cButton = new QTreePushButton;
2066 cButton->setItem(item);
2067 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2068 cButton->setToolTip(tr("close vector field"));
2069 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2070 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2071 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2073 QTreePushButton* rButton = new QTreePushButton;
2074 rButton->setItem(item);
2075 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2076 rButton->setToolTip(tr("reload vector field"));
2077 rButton->setEnabled(from_disk);
2078 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2079 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2080 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2082 DataTree->topLevelItem(index)->setExpanded(1);
2083 DataTree->topLevelItem(index)->addChild(item);
2084 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2085 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2087 //set the id of the image
2088 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2089 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2091 qApp->processEvents();
2093 QApplication::restoreOverrideCursor();
2095 //------------------------------------------------------------------------------
2098 //------------------------------------------------------------------------------
2099 void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
2101 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2102 vvSlicerManager* imageManager = mSlicerManagers[index];
2103 if (imageManager->SetVF(vf,file.toStdString())) {
2104 AddFieldEntry(file,index,false);
2106 QString error = "Cannot import the vector field for this image.\n";
2107 error += imageManager->GetLastError().c_str();
2108 QMessageBox::information(this,tr("Problem reading VF !"),error);
2110 QApplication::restoreOverrideCursor();
2112 //------------------------------------------------------------------------------
2115 //------------------------------------------------------------------------------
2116 void vvMainWindow::AddField(QString file,int index)
2118 if (QFile::exists(file)) {
2119 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2121 //init the progress events
2122 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2123 vvProgressDialog progress("Opening " + file.toStdString());
2124 qApp->processEvents();
2126 //read the vector and put it in the current mSlicerManager
2127 vvSlicerManager* imageManager = mSlicerManagers[index];
2128 qApp->processEvents();
2130 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2131 if (imageManager->SetVF(file.toStdString())) {
2132 imageManager->Render();
2133 AddFieldEntry(file,index,true);
2135 QApplication::restoreOverrideCursor();
2136 QString error = "Cannot import the vector field for this image.\n";
2137 error += imageManager->GetLastError().c_str();
2138 QMessageBox::information(this,tr("Problem reading VF !"),error);
2141 QMessageBox::information(this,tr("Problem reading VF !"),"File doesn't exist!");
2144 //------------------------------------------------------------------------------
2147 //------------------------------------------------------------------------------
2148 void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width, double r, double g, double b)
2150 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2151 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
2152 for (int i = 0; i < 4; i++) {
2153 mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
2154 mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
2155 mSlicerManagers[index]->GetSlicer(i)->SetVFWidth(width);
2156 mSlicerManagers[index]->GetSlicer(i)->SetVFColor(r,g,b);
2158 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
2160 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(0);
2164 //------------------------------------------------------------------------------
2167 //------------------------------------------------------------------------------
2168 void vvMainWindow::SetOverlayProperty(int color)
2170 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2171 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
2172 mSlicerManagers[index]->SetOverlayColor(color);
2173 mSlicerManagers[index]->SetColorMap(0);
2174 mSlicerManagers[index]->Render();
2177 //------------------------------------------------------------------------------
2179 //------------------------------------------------------------------------------
2180 void vvMainWindow::SetFusionProperty(int opacity, int colormap,double window, double level)
2182 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2183 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
2184 mSlicerManagers[index]->SetFusionOpacity(opacity);
2185 mSlicerManagers[index]->SetFusionColorMap(colormap);
2186 mSlicerManagers[index]->SetFusionWindow(window);
2187 mSlicerManagers[index]->SetFusionLevel(level);
2188 mSlicerManagers[index]->SetColorMap(0);
2189 mSlicerManagers[index]->Render();
2192 //------------------------------------------------------------------------------
2194 //------------------------------------------------------------------------------
2195 void vvMainWindow::SaveAs()
2197 if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
2198 QMessageBox::warning(this,tr("Unsupported type"),tr("Sorry, saving a vector field is unsupported for the moment"));
2202 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2203 int dimension = mSlicerManagers[index]->GetDimension();
2204 QStringList OutputListeFormat;
2205 OutputListeFormat.clear();
2206 if (dimension == 1) {
2207 OutputListeFormat.push_back(".mhd");
2209 if (dimension == 2) {
2210 OutputListeFormat.push_back(".bmp");
2211 OutputListeFormat.push_back(".png");
2212 OutputListeFormat.push_back(".jpeg");
2213 OutputListeFormat.push_back(".tif");
2214 OutputListeFormat.push_back(".mhd");
2215 OutputListeFormat.push_back(".hdr");
2216 OutputListeFormat.push_back(".vox");
2217 } else if (dimension == 3) {
2218 OutputListeFormat.push_back(".mhd");
2219 OutputListeFormat.push_back(".hdr");
2220 OutputListeFormat.push_back(".vox");
2221 } else if (dimension == 4) {
2222 OutputListeFormat.push_back(".mhd");
2224 QString Extensions = "AllFiles(*.*)";
2225 for (int i = 0; i < OutputListeFormat.count(); i++) {
2226 Extensions += ";;Images ( *";
2227 Extensions += OutputListeFormat[i];
2230 QString fileName = QFileDialog::getSaveFileName(this,
2232 mSlicerManagers[index]->GetFileName().c_str(),
2234 if (!fileName.isEmpty()) {
2235 std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
2236 if (OutputListeFormat.contains(
2237 fileformat.c_str())) {
2238 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2239 std::string action = "Saving";
2240 vvProgressDialog progress("Saving "+fileName.toStdString());
2241 qApp->processEvents();
2242 vvImageWriter::Pointer writer = vvImageWriter::New();
2243 writer->SetOutputFileName(fileName.toStdString());
2244 writer->SetInput(mSlicerManagers[index]->GetImage());
2246 QApplication::restoreOverrideCursor();
2247 if (writer->GetLastError().size()) {
2248 QString error = "Saving did not succeed\n";
2249 error += writer->GetLastError().c_str();
2250 QMessageBox::information(this,tr("Saving Problem"),error);
2254 QString error = fileformat.c_str();
2255 if (error.isEmpty())
2256 error += "no file format specified !";
2258 error += " format unknown !!!\n";
2259 QMessageBox::information(this,tr("Saving Problem"),error);
2264 //------------------------------------------------------------------------------
2267 //------------------------------------------------------------------------------
2268 void vvMainWindow::AddLink(QString image1,QString image2)
2270 unsigned int sm1 = 0;
2271 unsigned int sm2 = 0;
2273 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2274 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2275 mSlicerManagers[i]->AddLink(image2.toStdString());
2278 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2279 mSlicerManagers[i]->AddLink(image1.toStdString());
2284 if (linkPanel->isLinkAll()) {
2285 emit UpdateLinkedNavigation(mSlicerManagers[sm1]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2286 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2289 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[sm1], mSlicerManagers[sm1]->GetSlicer(0));
2293 //------------------------------------------------------------------------------
2296 //------------------------------------------------------------------------------
2297 void vvMainWindow::RemoveLink(QString image1,QString image2)
2299 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2300 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2301 mSlicerManagers[i]->RemoveLink(image2.toStdString());
2303 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2304 mSlicerManagers[i]->RemoveLink(image1.toStdString());
2308 //------------------------------------------------------------------------------
2310 //------------------------------------------------------------------------------
2311 void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset)
2314 while(sm != mSlicerManagers[index])
2316 index = (index+offset) % mSlicerManagers.size();
2318 QTreeWidgetItem* item = GetItemFromSlicerManager(mSlicerManagers[index]);
2319 //CurrentImageChanged(mSlicerManagers[index]->GetId()); //select new image
2320 item->setData(slicer+1,Qt::CheckStateRole,2); //change checkbox
2321 DisplayChanged(item,slicer+1);
2323 //------------------------------------------------------------------------------
2325 void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
2327 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2328 if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
2329 for (int j = 0; j < 4; j++) {
2330 mSlicerManagers[i]->SetTSliceInSlicer(value,j);
2331 //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
2332 //UpdateTSlice(j,value);
2334 mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
2339 //------------------------------------------------------------------------------
2342 //------------------------------------------------------------------------------
2343 void vvMainWindow::NOHorizontalSliderMoved()
2345 // if (mCurrentTime == NOHorizontalSlider->value()) return;
2346 HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
2347 // mCurrentTime = NOHorizontalSlider->value();
2349 //------------------------------------------------------------------------------
2352 //------------------------------------------------------------------------------
2353 void vvMainWindow::NEHorizontalSliderMoved()
2355 // if (mCurrentTime == NEHorizontalSlider->value()) return;
2356 HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
2357 // mCurrentTime = NEHorizontalSlider->value();
2359 //------------------------------------------------------------------------------
2362 //------------------------------------------------------------------------------
2363 void vvMainWindow::SOHorizontalSliderMoved()
2365 // if (mCurrentTime == SOHorizontalSlider->value()) return;
2366 HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
2367 // mCurrentTime = SOHorizontalSlider->value();
2369 //------------------------------------------------------------------------------
2372 //------------------------------------------------------------------------------
2373 void vvMainWindow::SEHorizontalSliderMoved()
2375 // if (mCurrentTime == SEHorizontalSlider->value()) return;
2376 HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
2377 // mCurrentTime = SEHorizontalSlider->value();
2379 //------------------------------------------------------------------------------
2381 //------------------------------------------------------------------------------
2382 void vvMainWindow::NOVerticalSliderChanged()
2384 static int value=-1;
2385 if (value == NOVerticalSlider->value()) return;
2386 else value = NOVerticalSlider->value();
2387 // int value = NOVerticalSlider->value();
2388 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2389 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2390 if (mSlicerManagers[i]->GetSlicer(0)->GetSlice() != value) {
2391 mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
2392 mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
2394 // If nor Update/Render -> slider not work
2395 // only render = ok navigation, but for contour Update needed but slower ?
2397 mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
2398 //mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2404 //------------------------------------------------------------------------------
2407 //------------------------------------------------------------------------------
2408 void vvMainWindow::NEVerticalSliderChanged()
2410 static int value=-1;
2411 if (value == NEVerticalSlider->value()) return;
2412 else value = NEVerticalSlider->value();
2413 // int value = NEVerticalSlider->value();
2414 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2415 if (DataTree->topLevelItem(i)->data(COLUMN_UR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2416 if (mSlicerManagers[i]->GetSlicer(1)->GetSlice() != value) {
2417 mSlicerManagers[i]->GetSlicer(1)->SetSlice(value);
2418 mSlicerManagers[i]->VerticalSliderHasChanged(1, value);
2419 mSlicerManagers[i]->UpdateSlice(1);
2420 //mSlicerManagers[i]->GetSlicer(1)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2426 //------------------------------------------------------------------------------
2429 //------------------------------------------------------------------------------
2430 void vvMainWindow::SOVerticalSliderChanged()
2432 static int value=-1;
2433 if (value == SOVerticalSlider->value()) return;
2434 else value = SOVerticalSlider->value();
2435 //int value = SOVerticalSlider->value();
2436 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2437 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2438 if (mSlicerManagers[i]->GetSlicer(2)->GetSlice() != value) {
2439 mSlicerManagers[i]->GetSlicer(2)->SetSlice(value);
2440 mSlicerManagers[i]->VerticalSliderHasChanged(2, value);
2441 mSlicerManagers[i]->UpdateSlice(2);
2442 //mSlicerManagers[i]->GetSlicer(2)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2444 // else { DD("avoid SOVerticalSlider slicer update"); }
2449 //------------------------------------------------------------------------------
2452 //------------------------------------------------------------------------------
2453 void vvMainWindow::SEVerticalSliderChanged()
2455 static int value=-1;
2456 if (value == SEVerticalSlider->value()) return;
2457 else value = SEVerticalSlider->value();
2458 // int value = SEVerticalSlider->value();
2459 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2460 if (DataTree->topLevelItem(i)->data(COLUMN_DR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2461 if (mSlicerManagers[i]->GetSlicer(3)->GetSlice() != value) {
2462 mSlicerManagers[i]->GetSlicer(3)->SetSlice(value);
2463 mSlicerManagers[i]->VerticalSliderHasChanged(3, value);
2464 mSlicerManagers[i]->UpdateSlice(3);
2465 //mSlicerManagers[i]->GetSlicer(3)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2471 //------------------------------------------------------------------------------
2474 //------------------------------------------------------------------------------
2475 void vvMainWindow::UpdateSlice(int slicer, int slice)
2477 // DD("vvMainWindow::UpdateSlice");
2481 // if (slice != NOVerticalSlider->value())
2482 NOVerticalSlider->setValue(slice);
2485 NEVerticalSlider->setValue(slice);
2488 SOVerticalSlider->setValue(slice);
2491 SEVerticalSlider->setValue(slice);
2495 // DD("vvMainWindow:UpdateSlice END");
2497 //------------------------------------------------------------------------------
2500 //------------------------------------------------------------------------------
2501 void vvMainWindow::UpdateTSlice(int slicer, int slice)
2505 NOHorizontalSlider->setValue(slice);
2508 NEHorizontalSlider->setValue(slice);
2511 SOHorizontalSlider->setValue(slice);
2514 SEHorizontalSlider->setValue(slice);
2518 //------------------------------------------------------------------------------
2521 //------------------------------------------------------------------------------
2522 void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax)
2524 int position = int((min+max)/2);
2525 int tPosition = int((tmin+tmax)/2);
2527 NOVerticalSlider->setValue(position);
2528 NOVerticalSlider->setRange(min,max);
2529 NOHorizontalSlider->setRange(tmin,tmax);
2530 NOHorizontalSlider->setValue(tPosition);
2531 } else if (slicer == 1) {
2532 NEVerticalSlider->setValue(position);
2533 NEVerticalSlider->setRange(min,max);
2534 NEHorizontalSlider->setRange(tmin,tmax);
2535 NEHorizontalSlider->setValue(tPosition);
2536 } else if (slicer == 2) {
2537 SOVerticalSlider->setValue(position);
2538 SOVerticalSlider->setRange(min,max);
2539 SOHorizontalSlider->setRange(tmin,tmax);
2540 SOHorizontalSlider->setValue(tPosition);
2541 } else if (slicer == 3) {
2542 SEVerticalSlider->setValue(position);
2543 SEVerticalSlider->setRange(min,max);
2544 SEHorizontalSlider->setRange(tmin,tmax);
2545 SEHorizontalSlider->setValue(tPosition);
2548 //------------------------------------------------------------------------------
2551 //------------------------------------------------------------------------------
2552 void vvMainWindow::SaveNOScreenshot()
2554 SaveScreenshot(NOViewWidget);
2556 //------------------------------------------------------------------------------
2559 //------------------------------------------------------------------------------
2560 void vvMainWindow::SaveNEScreenshot()
2562 SaveScreenshot(NEViewWidget);
2564 //------------------------------------------------------------------------------
2567 //------------------------------------------------------------------------------
2568 void vvMainWindow::SaveSOScreenshot()
2570 SaveScreenshot(SOViewWidget);
2572 //------------------------------------------------------------------------------
2575 //------------------------------------------------------------------------------
2576 void vvMainWindow::SaveSEScreenshot()
2578 SaveScreenshot(SEViewWidget);
2580 //------------------------------------------------------------------------------
2583 //------------------------------------------------------------------------------
2584 void vvMainWindow::SaveScreenshot(QVTKWidget *widget)
2586 QString Extensions = "Images( *.png);;";
2587 Extensions += "Images( *.jpg);;";
2588 Extensions += "Images( *.bmp);;";
2589 Extensions += "Images( *.tif);;";
2590 Extensions += "Images( *.ppm)";
2591 #ifdef VTK_USE_FFMPEG_ENCODER
2592 Extensions += "Images( *.avi)";
2594 #ifdef VTK_USE_MPEG2_ENCODER
2595 Extensions += "Images( *.mpg)";
2598 int smIndex=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2599 QString fileName = QFileDialog::getSaveFileName(this,
2601 itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(),
2604 if (!fileName.isEmpty()) {
2605 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2606 w2i->SetInput(widget->GetRenderWindow());
2608 vtkImageData *image = w2i->GetOutput();
2610 const char *ext = fileName.toStdString().c_str() + strlen(fileName.toStdString().c_str()) - 4;
2611 if (!strcmp(ext, ".bmp")) {
2612 vtkBMPWriter *bmp = vtkBMPWriter::New();
2613 bmp->SetInput(image);
2614 bmp->SetFileName(fileName.toStdString().c_str());
2617 } else if (!strcmp(ext, ".tif")) {
2618 vtkTIFFWriter *tif = vtkTIFFWriter::New();
2619 tif->SetInput(image);
2620 tif->SetFileName(fileName.toStdString().c_str());
2623 } else if (!strcmp(ext, ".ppm")) {
2624 vtkPNMWriter *pnm = vtkPNMWriter::New();
2625 pnm->SetInput(image);
2626 pnm->SetFileName(fileName.toStdString().c_str());
2629 } else if (!strcmp(ext, ".png")) {
2630 vtkPNGWriter *png = vtkPNGWriter::New();
2631 png->SetInput(image);
2632 png->SetFileName(fileName.toStdString().c_str());
2635 } else if (!strcmp(ext, ".jpg")) {
2636 vtkJPEGWriter *jpg = vtkJPEGWriter::New();
2637 jpg->SetInput(image);
2638 jpg->SetFileName(fileName.toStdString().c_str());
2641 #ifdef VTK_USE_FFMPEG_ENCODER
2642 } else if (!strcmp(ext, ".avi")) {
2643 vtkFFMPEGWriter *mpg = vtkFFMPEGWriter::New();
2644 mpg->SetInput(image);
2645 mpg->SetFileName(fileName.toStdString().c_str());
2650 vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
2651 int nSlice = vvImg->GetVTKImages().size();
2652 for(int i=0; i<nSlice; i++)
2654 mSlicerManagers[smIndex]->SetNextTSlice(0);
2655 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2656 w2i->SetInput(widget->GetRenderWindow());
2658 mpg->SetInput(w2i->GetOutput());
2664 #ifdef VTK_USE_MPEG2_ENCODER
2665 } else if (!strcmp(ext, ".mpg")) {
2666 vtkMPEG2Writer *mpg = vtkMPEG2Writer::New();
2667 mpg->SetInput(image);
2668 mpg->SetFileName(fileName.toStdString().c_str());
2671 vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
2672 int nSlice = vvImg->GetVTKImages().size();
2673 for(int i=0; i<nSlice; i++)
2675 mSlicerManagers[smIndex]->SetNextTSlice(0);
2676 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2677 w2i->SetInput(widget->GetRenderWindow());
2679 mpg->SetInput(w2i->GetOutput());
2686 QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
2690 //------------------------------------------------------------------------------
2693 //------------------------------------------------------------------------------
2694 void vvMainWindow::GoToCursor()
2696 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2697 for (int column = 1; column < 5; column++) {
2698 if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1) {
2699 double* cursorPos = mSlicerManagers[index]->GetSlicer(column-1)->GetCursorPosition();
2700 mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
2701 cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
2702 mSlicerManagers[index]->UpdateViews(1,column-1);
2703 mSlicerManagers[index]->UpdateLinked(column-1);
2708 //------------------------------------------------------------------------------
2710 //------------------------------------------------------------------------------
2711 void vvMainWindow::PlayPause()
2715 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_play.png")));
2719 int image_number=DataTree->topLevelItemCount();
2721 for (int i=0; i<image_number; i++)
2722 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1) {
2728 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
2729 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2733 //------------------------------------------------------------------------------
2735 //------------------------------------------------------------------------------
2736 void vvMainWindow::PlayNext()
2738 if (playMode && !this->isHidden()) {
2739 int image_number=DataTree->topLevelItemCount();
2740 ///Only play one slicer per SM, and only if the SM is being displayed
2741 for (int i=0; i<image_number; i++)
2742 for (int j=0; j<4; j++)
2743 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1 &&
2744 DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
2745 mSlicerManagers[i]->SetNextTSlice(j);
2748 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2751 //------------------------------------------------------------------------------
2753 void vvMainWindow::ShowLastImage()
2755 if (mSlicerManagers.size() > 1) {
2756 QTreeWidgetItem * item=DataTree->topLevelItem(DataTree->topLevelItemCount()-1);
2757 CurrentImageChanged(mSlicerManagers.back()->GetId()); //select new image
2758 item->setData(1,Qt::CheckStateRole,2); //show the new image in the first panel
2759 DisplayChanged(item,1);
2763 //------------------------------------------------------------------------------
2764 void vvMainWindow::UpdateRenderWindows()
2766 if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
2767 if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
2768 if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
2769 if (SEViewWidget->GetRenderWindow()) SEViewWidget->GetRenderWindow()->Render();
2771 //------------------------------------------------------------------------------
2773 //------------------------------------------------------------------------------
2774 void vvMainWindow::SegmentationOnCurrentImage()
2776 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2778 vvSegmentationDialog segmentation;
2779 segmentation.SetImage(mSlicerManagers[index]->GetSlicer(0)->GetImage());
2780 segmentation.exec();
2782 //------------------------------------------------------------------------------
2784 void vvMainWindow::SurfaceViewerLaunch()
2786 vvSurfaceViewerDialog surfaceViewer;
2787 surfaceViewer.exec();
2789 //------------------------------------------------------------------------------
2792 //------------------------------------------------------------------------------
2793 int vvMainWindow::GetImageDuplicateFilenameNumber(std::string filename)
2796 for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
2797 vvSlicerManager * v = mSlicerManagers[l];
2798 if (v->GetBaseFileName() ==
2799 vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
2800 number = std::max(number, v->GetBaseFileNameNumber()+1);
2805 //------------------------------------------------------------------------------
2808 //------------------------------------------------------------------------------
2809 vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
2811 // Change filename if another image exist with the same name
2812 int number = GetImageDuplicateFilenameNumber(filename);
2814 // Create new SliceManager
2815 vvSlicerManager* slicer_manager = new vvSlicerManager(4);
2816 slicer_manager->SetImage(image);//, IMAGE, number);
2817 // filename = filename+"_"+clitk::toString(number);
2818 slicer_manager->SetFilename(filename, number);
2819 mSlicerManagers.push_back(slicer_manager);
2821 //create an item in the tree with good settings
2822 QTreeWidgetItem *item = new QTreeWidgetItem();
2823 item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
2824 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,slicer_manager->GetFileName().c_str());//filename.c_str());
2825 qApp->processEvents();
2827 for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1);
2829 //Create the buttons for reload and close
2830 qApp->processEvents();
2831 QTreePushButton* cButton = new QTreePushButton;
2832 cButton->setItem(item);
2833 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2834 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2835 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2836 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2838 QTreePushButton* rButton = new QTreePushButton;
2839 rButton->setItem(item);
2840 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2841 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2842 rButton->setEnabled(0);
2843 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2844 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2846 DataTree->addTopLevelItem(item);
2847 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2848 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2850 //set the id of the image
2851 QString id = slicer_manager->GetFileName().c_str() + QString::number(mSlicerManagers.size()-1);
2852 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2853 mSlicerManagers.back()->SetId(id.toStdString());
2855 linkPanel->addImage(slicer_manager->GetFileName().c_str()// filename
2856 , id.toStdString());
2858 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
2859 this, SLOT(CurrentImageChanged(std::string)));
2860 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
2861 this, SLOT(CurrentPickedImageChanged(std::string)));
2862 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
2863 this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
2864 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
2865 this, SLOT(VectorChanged(int,double,double,double, double)));
2866 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
2867 this, SLOT(OverlayChanged(int,double,double)));
2868 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
2869 this, SLOT(FusionChanged(int,double)));
2870 connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
2871 this,SLOT(WindowsChanged(int, int, int)));
2872 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
2873 this,SLOT(WindowLevelChanged(double, double, int, int)));
2874 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
2875 this,SLOT(UpdateSlice(int,int)));
2876 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
2877 this,SLOT(UpdateTSlice(int, int)));
2878 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
2879 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
2880 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
2881 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
2882 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
2883 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
2884 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
2885 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
2886 connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
2888 qApp->processEvents();
2892 qApp->processEvents();
2896 return slicer_manager;
2898 //------------------------------------------------------------------------------
2901 //------------------------------------------------------------------------------
2902 void vvMainWindow::UpdateCurrentSlicer()
2905 if (DataTree->selectedItems().size() > 0) {
2906 index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2908 mSlicerManagerCurrentIndex = index;
2910 //------------------------------------------------------------------------------