1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://www.centreleonberard.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ===========================================================================**/
20 #include <QMessageBox>
21 #include <QInputDialog>
23 #include "QTreePushButton.h"
28 #include "vvMainWindow.h"
29 #include "vvHelpDialog.h"
30 #include "vvRegisterForm.h"
31 #include "vvDocumentation.h"
32 #include "vvProgressDialog.h"
33 #include "vvQDicomSeriesSelector.h"
34 #include "vvSlicerManager.h"
35 #include "clitkImageCommon.h"
37 #include "vvInteractorStyleNavigator.h"
38 #include "vvImageWriter.h"
39 #include "vvSegmentationDialog.h"
40 #include "vvSurfaceViewerDialog.h"
41 #include "vvDeformationDialog.h"
42 #include "vvImageWarp.h"
44 #include "vvMidPosition.h"
46 #include "vvStructSelector.h"
47 #include "vvMeshReader.h"
48 #include "clitkConfiguration.h"
52 #include <itkImageFileReader.h>
53 #include <itkByteSwapper.h>
54 #include <itkCommand.h>
55 #include <itkNumericSeriesFileNames.h>
58 #include <vtkImageData.h>
59 #include <vtkImageActor.h>
60 #include <vtkCornerAnnotation.h>
61 #include <vtkRenderWindow.h>
62 #include <vtkRenderWindowInteractor.h>
63 #include <vtkRenderer.h>
64 #include <vtkRendererCollection.h>
65 #include <vtkWindowToImageFilter.h>
66 #include <vtkBMPWriter.h>
67 #include <vtkTIFFWriter.h>
68 #include <vtkPNMWriter.h>
69 #include <vtkPNGWriter.h>
70 #include <vtkJPEGWriter.h>
71 #ifdef VTK_USE_FFMPEG_ENCODER
72 # include <vtkFFMPEGWriter.h>
74 #ifdef VTK_USE_MPEG2_ENCODER
75 # include <vtkMPEG2Writer.h>
77 #include <vtkMatrix4x4.h>
78 #include <vtkTransform.h>
86 #define COLUMN_UL_VIEW 1
87 #define COLUMN_UR_VIEW 2
88 #define COLUMN_DL_VIEW 3
89 #define COLUMN_DR_VIEW 4
90 #define COLUMN_CLOSE_IMAGE 5
91 #define COLUMN_RELOAD_IMAGE 6
92 #define COLUMN_IMAGE_NAME 7
94 #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN )"
97 0,Qt::UserRole full filename
98 1,Qt::CheckStateRole checkbutton UL View
99 1,Qt::UserRole overlay, fusion or vector
100 2,Qt::CheckStateRole checkbutton UR View
101 3,Qt::CheckStateRole checkbutton DL View
102 4,Qt::CheckStateRole checkbutton DR View
104 5,Qt::UserRole mSlicerManager id*/
106 //------------------------------------------------------------------------------
107 vvMainWindow::vvMainWindow():vvMainWindowBase()
109 setupUi(this); // this sets up the GUI
112 mMenuTools = menuTools;
113 // mMenuSegmentation = menuSegmentation;
114 mContextMenu = &contextMenu;
115 mMenuExperimentalTools = menuExperimental;
118 mCurrentSelectedImageId = "";
119 mCurrentPickedImageId = "";
120 mCurrentPickedImageIndex = 0;
122 //Init the contextMenu
123 this->setContextMenuPolicy(Qt::CustomContextMenu);
124 contextActions.resize(0);
125 QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
126 tr("O&pen new Image"));
127 actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
128 connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
129 contextActions.push_back(actionOpen_new_image);
130 contextMenu.addSeparator();
132 QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
133 tr("Close Current Image"));
134 connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
135 contextActions.push_back(actionClose_Image);
137 QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
138 tr("Reload Current Image"));
139 connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
140 contextActions.push_back(actionReload_image);
142 QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
143 tr("Save Current Image"));
144 connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
145 contextActions.push_back(actionSave_image);
147 contextMenu.addSeparator();
149 contextMenu.addAction(actionAdd_VF_to_current_Image);
150 contextActions.push_back(actionAdd_VF_to_current_Image);
152 QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
153 tr("Add overlay image to current image"));
154 contextMenu.addAction(actionAdd_Overlay_to_current_Image);
155 contextActions.push_back(actionAdd_Overlay_to_current_Image);
157 connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
159 contextMenu.addAction(actionAdd_fusion_image);
160 connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
161 contextActions.push_back(actionAdd_fusion_image);
163 contextMenu.addSeparator();
164 QAction* actionResetMatrix = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/identity.png")),
165 tr("Reset transformation to identity"));
166 connect(actionResetMatrix, SIGNAL(triggered()), this,SLOT(ResetTransformationToIdentity()));
170 QMenu * m = new QMenu(menubar);
172 // m->setObjectName(QString::fromUtf8("TOTOTO"));
173 contextMenu.addMenu(m);
174 QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
176 QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
180 connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
184 mSlicerManagers.resize(0);
194 header.append("Name");
196 DataTree->setHeaderLabels(header);
197 DataTree->resizeColumnToContents(COLUMN_TREE);
198 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
199 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
200 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
201 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
202 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
203 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
204 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
207 documentation = new vvDocumentation();
208 help_dialog = new vvHelpDialog();
209 dicomSeriesSelector = new vvDicomSeriesSelector();
211 inverseButton->setEnabled(0);
212 actionAdd_Overlay_to_current_Image->setEnabled(0);
213 actionSave_As->setEnabled(0);
214 actionAdd_VF_to_current_Image->setEnabled(0);
215 actionAdd_fusion_image->setEnabled(0);
218 verticalSliders.push_back(NOVerticalSlider);
219 verticalSliders.push_back(NEVerticalSlider);
220 verticalSliders.push_back(SOVerticalSlider);
221 verticalSliders.push_back(SEVerticalSlider);
223 for (int i =0; i < 4; i++)
224 verticalSliders[i]->hide();
226 horizontalSliders.push_back(NOHorizontalSlider);
227 horizontalSliders.push_back(NEHorizontalSlider);
228 horizontalSliders.push_back(SOHorizontalSlider);
229 horizontalSliders.push_back(SEHorizontalSlider);
231 for (int i =0; i < 4; i++)
232 horizontalSliders[i]->hide();
235 connect(NOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOVerticalSliderChanged()));
236 connect(NEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEVerticalSliderChanged()));
237 connect(SOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOVerticalSliderChanged()));
238 connect(SEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEVerticalSliderChanged()));
240 connect(NOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOHorizontalSliderMoved()));
241 connect(NEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEHorizontalSliderMoved()));
242 connect(SOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOHorizontalSliderMoved()));
243 connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved()));
246 connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition()));
247 connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration()));
248 connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
249 connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
250 connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
251 connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
252 connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
253 connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
254 connect(actionSlice_Image_As_Multiple_Images,SIGNAL(triggered()),this,SLOT(SliceImages()));
255 connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
256 connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
257 connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
258 connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
259 connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
260 connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
261 connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
262 connect(actionRegister_vv,SIGNAL(triggered()),this,SLOT(PopupRegisterForm()));
264 ///////////////////////////////////////////////
265 connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
266 connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
267 ///////////////////////////////////////////////
269 actionNorth_East_Window->setEnabled(0);
270 actionNorth_West_Window->setEnabled(0);
271 actionSouth_East_Window->setEnabled(0);
272 actionSouth_West_Window->setEnabled(0);
274 connect(actionNorth_East_Window,SIGNAL(triggered()),this,SLOT(SaveNEScreenshot()));
275 connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
276 connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
277 connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
279 connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
280 connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
281 SLOT(DisplayChanged(QTreeWidgetItem*, int)));
283 connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
284 connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
285 connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
286 connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
287 connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
288 connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
289 connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages()));
292 connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
294 connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
295 connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
296 connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double)));
297 connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int)),this,SLOT(SetOverlayProperty(int)));
298 connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,int,double,double)),
299 this,SLOT(SetFusionProperty(int,int,int,double,double)));
300 connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
304 playButton->setEnabled(0);
305 frameRateLabel->setEnabled(0);
306 frameRateSpinBox->setEnabled(0);
307 connect(playButton, SIGNAL(clicked()),this,SLOT(PlayPause()));
308 connect(frameRateSpinBox, SIGNAL(valueChanged(int)),this,SLOT(ChangeFrameRate(int)));
310 goToCursorPushButton->setEnabled(0);
311 connect(goToCursorPushButton, SIGNAL(clicked()),this,SLOT(GoToCursor()));
313 NOViewWidget->hide();
314 NEViewWidget->hide();
315 SOViewWidget->hide();
316 SEViewWidget->hide();
318 //Recently opened files
319 std::list<std::string> recent_files = GetRecentlyOpenedImages();
320 recentlyOpenedFilesMenu=NULL;
321 if ( !recent_files.empty() ) {
322 createRecentlyOpenedFilesMenu();
323 updateRecentlyOpenedFilesMenu(recent_files);
326 // Adding all new tools (insertion in the menu)
327 vvToolManager::GetInstance()->InsertToolsInMenu(this);
328 vvToolManager::GetInstance()->EnableToolsInMenu(this, false);
330 if (!CLITK_EXPERIMENTAL)
331 menuExperimental->menuAction()->setVisible(false);
334 QTimer * timerMemory = new QTimer(this);
335 //timerMemory->setInterval(5);
336 connect(timerMemory, SIGNAL(timeout()), this, SLOT(UpdateMemoryUsage()));
337 timerMemory->start(2000);
339 //------------------------------------------------------------------------------
340 void vvMainWindow::show()
342 vvMainWindowBase::show();
343 PopupRegisterForm(true);
345 //------------------------------------------------------------------------------
346 void vvMainWindow::UpdateMemoryUsage()
348 // clitk::PrintMemory(true);
349 if (clitk::GetMemoryUsageInMb() == 0) infoPanel->setMemoryInMb("NA");
350 else infoPanel->setMemoryInMb(QString::number(clitk::GetMemoryUsageInMb())+" MiB");
352 //------------------------------------------------------------------------------
355 //------------------------------------------------------------------------------
356 void vvMainWindow::createRecentlyOpenedFilesMenu()
358 recentlyOpenedFilesMenu = new QMenu("Recently opened files...");
359 recentlyOpenedFilesMenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
360 menuFile->insertMenu(actionOpen_Image_With_Time,recentlyOpenedFilesMenu);
361 menuFile->insertSeparator(actionOpen_Image_With_Time);
363 //------------------------------------------------------------------------------
366 //------------------------------------------------------------------------------
368 void vvMainWindow::updateRecentlyOpenedFilesMenu(const std::list<std::string> &recent_files)
370 if(recentlyOpenedFilesMenu==NULL) {
371 createRecentlyOpenedFilesMenu();
373 recentlyOpenedFilesMenu->clear();
375 for (std::list<std::string>::const_iterator i = recent_files.begin(); i!=recent_files.end(); i++) {
376 QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")), i->c_str(),this);
377 recentlyOpenedFilesMenu->addAction(current);
378 connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage()));
381 //------------------------------------------------------------------------------
384 //------------------------------------------------------------------------------
385 void vvMainWindow::ComputeMidPosition()
388 int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
389 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
390 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
393 midp.slicer_manager = mSlicerManagers[index];
394 midp.reference_image_index = ref;
395 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
398 QMessageBox::warning(this, "Error computing midposition image",midp.error_message.c_str());
400 QFileInfo info(midp.slicer_manager->GetFileName().c_str());
401 AddImage(midp.output,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_midposition.mhd");
403 QApplication::restoreOverrideCursor();
406 //------------------------------------------------------------------------------
409 //------------------------------------------------------------------------------
410 void vvMainWindow::AddContour(int image_index, vvMesh::Pointer contour, bool propagation)
412 QTreeWidgetItem *item = new QTreeWidgetItem();
413 item->setData(0,Qt::UserRole,"filename.vtk");
414 item->setData(1,Qt::UserRole,tr("contour"));
416 brush.setColor(QColor(contour->r*255,contour->g*255,contour->b*255));
417 brush.setStyle(Qt::SolidPattern);
418 item->setData(COLUMN_IMAGE_NAME,Qt::BackgroundRole,brush);
419 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
421 for (int j = 1; j <= 4; j++)
422 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(image_index)->data(j,Qt::CheckStateRole));
424 QTreePushButton* cButton = new QTreePushButton;
425 cButton->setItem(item);
426 cButton->setColumn(COLUMN_CLOSE_IMAGE);
427 cButton->setToolTip(tr("close image"));
428 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
429 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
430 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
432 QTreePushButton* rButton = new QTreePushButton;
433 rButton->setItem(item);
434 rButton->setColumn(COLUMN_RELOAD_IMAGE);
435 rButton->setToolTip(tr("reload image"));
436 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
437 rButton->setEnabled(false);
439 //connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
440 //this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
442 DataTree->topLevelItem(image_index)->setExpanded(1);
443 DataTree->topLevelItem(image_index)->addChild(item);
444 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
445 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
446 QString id = DataTree->topLevelItem(image_index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
447 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
450 mSlicerManagers[image_index]->AddContour(contour,propagation);
451 mSlicerManagers[image_index]->Render();
453 //------------------------------------------------------------------------------
456 //------------------------------------------------------------------------------
457 void vvMainWindow::OpenVTKContour()
459 if (mSlicerManagers.size() > 0) {
460 QString Extensions = "Images ( *.vtk *.obj)";
461 Extensions += ";;All Files (*)";
462 QString file = QFileDialog::getOpenFileName(this,tr("Open vtkPolyData"),mInputPathName,Extensions);
465 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
466 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
468 reader.SetImage(mSlicerManagers[index]->GetImage());
469 reader.SetModeToVTK();
470 reader.SetFilename(file.toStdString());
472 AddContour(index,reader.GetOutput()[0],false);
473 QApplication::restoreOverrideCursor();
476 //------------------------------------------------------------------------------
479 //------------------------------------------------------------------------------
480 void vvMainWindow::OpenDCStructContour()
482 if (mSlicerManagers.size() > 0) {
483 QString Extensions = "Dicom Files ( *.dcm RS*)";
484 Extensions += ";;All Files (*)";
485 QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
488 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
490 reader.SetFilename(file.toStdString());
491 vvStructSelector selector;
492 selector.SetStructures(reader.GetROINames());
493 if (!mSlicerManagers[index]->GetVF().IsNull())
494 selector.EnablePropagationCheckBox();
495 if (selector.exec()) {
496 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
497 reader.SetSelectedItems(selector.getSelectedItems());
498 reader.SetImage(mSlicerManagers[index]->GetImage());
499 if (selector.PropagationEnabled())
500 reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
502 std::vector<vvMesh::Pointer> contours=reader.GetOutput();
503 for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
504 i!=contours.end(); i++)
505 AddContour(index,*i,selector.PropagationEnabled());
506 QApplication::restoreOverrideCursor();
510 //------------------------------------------------------------------------------
513 //------------------------------------------------------------------------------
514 void vvMainWindow::ComputeDeformableRegistration()
516 if (mSlicerManagers.size() > 0) {
517 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
518 vvDeformationDialog dialog(index,mSlicerManagers);
520 std::string base_name=itksys::SystemTools::GetFilenameWithoutExtension(mSlicerManagers[dialog.GetInputFileIndex()]->GetFileName());
521 AddField(dialog.GetOutput(),dialog.getFieldFile(),dialog.GetInputFileIndex());
522 WarpImage(dialog.GetSelectedSlicer(),dialog.GetReferenceFrameIndex());
524 std::cout << "Error or user cancellation while computing deformation field..." << std::endl;
525 } else QMessageBox::information(this, "Need to open image","You must open an image first.");
527 //------------------------------------------------------------------------------
530 //------------------------------------------------------------------------------
531 void vvMainWindow::WarpImage()
533 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
534 if (!mSlicerManagers[index]->GetVF().IsNull()) {
536 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
537 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
539 WarpImage(mSlicerManagers[index],ref);
542 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field"));
544 //------------------------------------------------------------------------------
547 //------------------------------------------------------------------------------
548 void vvMainWindow::WarpImage(vvSlicerManager* selected_slicer,int reference_phase)
550 if (!selected_slicer->GetVF().IsNull()) {
551 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
552 QFileInfo info(selected_slicer->GetFileName().c_str());
553 vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
554 reference_phase,this);
555 if (warp.ComputeWarpedImage()) {
556 AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
557 AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
558 AddImage(warp.GetJacobianImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_jacobian.mhd");
559 QApplication::restoreOverrideCursor();
561 QApplication::restoreOverrideCursor();
562 QMessageBox::warning(this,tr("Different spacings"),tr("The vector field and image spacings must be the same in order to warp."));
565 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field."));
567 //------------------------------------------------------------------------------
570 //------------------------------------------------------------------------------
571 vvMainWindow::~vvMainWindow()
573 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
574 if (mSlicerManagers[i] != NULL)
575 delete mSlicerManagers[i];
578 //------------------------------------------------------------------------------
580 //------------------------------------------------------------------------------
581 QTabWidget * vvMainWindow::GetTab()
585 //------------------------------------------------------------------------------
588 //------------------------------------------------------------------------------
589 void vvMainWindow::MergeImages()
591 QString Extensions = EXTENSIONS;
592 Extensions += ";;All Files (*)";
593 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images"),mInputPathName,Extensions);
596 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
597 std::vector<std::string> vector;
599 unsigned int currentDim = 0;
600 std::vector<double> currentSpacing;
601 std::vector<int> currentSize;
602 std::vector<double> currentOrigin;
604 for (int i = 0; i < files.size(); i++) {
605 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
606 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
607 reader->SetFileName(files[i].toStdString().c_str());
608 reader->ReadImageInformation();
610 //NOViewWidget->hide();
611 //NEViewWidget->hide();
612 //SOViewWidget->hide();
613 //SEViewWidget->hide();
615 currentDim = reader->GetNumberOfDimensions();
617 for (unsigned int j = 0; j < currentDim; j++) {
620 currentSpacing.resize(currentDim);
621 currentSize.resize(currentDim);
622 currentOrigin.resize(currentDim);
624 currentOrigin[j] = reader->GetOrigin(j);
625 currentSpacing[j] = reader->GetSpacing(j);
626 currentSize[j] = reader->GetDimensions(j);
627 } else if (currentDim != reader->GetNumberOfDimensions()
628 || currentSpacing[j] != reader->GetSpacing(j)
629 || currentSize[j] != (int)reader->GetDimensions(j)
630 || currentOrigin[j] != reader->GetOrigin(j)) {
631 QString error = "Cannot read file (too different from others ";
632 error += files[i].toStdString().c_str();
633 QMessageBox::information(this,tr("Reading problem"),error);
639 vector.push_back(files[i].toStdString());
642 if (vector.size() > 0)
643 LoadImages(vector, vvImageReader::MERGED);
645 //------------------------------------------------------------------------------
647 //------------------------------------------------------------------------------
648 void vvMainWindow::SliceImages()
650 QString Extensions = EXTENSIONS;
651 Extensions += ";;All Files (*)";
653 QStringList files = QFileDialog::getOpenFileNames(this,tr("Slice Images"),mInputPathName,Extensions);
656 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
657 std::vector<std::string> vector;
658 for (int i = 0; i < files.size(); i++)
659 vector.push_back(files[i].toStdString());
660 LoadImages(vector, vvImageReader::SLICED);
662 //------------------------------------------------------------------------------
664 //------------------------------------------------------------------------------
665 void vvMainWindow::MergeImagesWithTime()
667 QString Extensions = EXTENSIONS;
668 Extensions += ";;All Files (*)";
669 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images With Time"),mInputPathName,Extensions);
672 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
673 std::vector<std::string> vector;
675 unsigned int currentDim = 0;
676 std::vector<double> currentSpacing;
677 std::vector<int> currentSize;
678 std::vector<double> currentOrigin;
680 for (int i = 0; i < files.size(); i++) {
681 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
682 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
684 reader->SetFileName(files[i].toStdString().c_str());
685 reader->ReadImageInformation();
687 currentDim = reader->GetNumberOfDimensions();
689 for (unsigned int j = 0; j < currentDim; j++) {
692 currentSpacing.resize(currentDim);
693 currentSize.resize(currentDim);
694 currentOrigin.resize(currentDim);
696 currentOrigin[j] = reader->GetOrigin(j);
697 currentSpacing[j] = reader->GetSpacing(j);
698 currentSize[j] = reader->GetDimensions(j);
699 } else if (currentDim != reader->GetNumberOfDimensions()
700 || currentSpacing[j] != reader->GetSpacing(j)
701 || currentSize[j] != (int)reader->GetDimensions(j)
702 || currentOrigin[j] != reader->GetOrigin(j)) {
703 QString error = "Cannot read file (too different from others ";
704 error += files[i].toStdString().c_str();
705 QMessageBox::information(this,tr("Reading problem"),error);
711 vector.push_back(files[i].toStdString());
713 QString error = "Cannot read file info for ";
714 error += files[i].toStdString().c_str();
716 error += "Maybe you're trying to open an image in an unsupported format?\n";
717 QMessageBox::information(this,tr("Reading problem"),error);
720 sort(vector.begin(),vector.end());
721 if (vector.size() > 1)
722 LoadImages(vector, vvImageReader::MERGEDWITHTIME);
724 QMessageBox::warning(this,tr("Reading problem"),"You need to select at least two images to merge images with time.\nIf you only want to open one image, please use the \"Open Image\" function.");
726 //------------------------------------------------------------------------------
729 //------------------------------------------------------------------------------
730 void vvMainWindow::OpenDicom()
732 std::vector<std::string> files;
734 std::cout << "dicomSeriesSelector " << std::endl;
735 if (dicomSeriesSelector->exec() == QDialog::Accepted) {
736 files = *(dicomSeriesSelector->GetFilenames());
737 LoadImages(files, vvImageReader::DICOM);
740 //------------------------------------------------------------------------------
742 //------------------------------------------------------------------------------
743 void vvMainWindow::OpenImages()
745 QString Extensions = EXTENSIONS;
746 Extensions += ";;All Files (*)";
748 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images"),mInputPathName,Extensions);
751 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
752 std::vector<std::string> vector;
753 for (int i = 0; i < files.size(); i++)
754 vector.push_back(files[i].toStdString());
755 LoadImages(vector, vvImageReader::IMAGE);
757 //------------------------------------------------------------------------------
758 void vvMainWindow::OpenRecentImage()
760 QAction * caller = qobject_cast<QAction*>(sender());
761 std::vector<std::string> images;
762 images.push_back(caller->text().toStdString());
763 mInputPathName = itksys::SystemTools::GetFilenamePath(images[0]).c_str();
764 LoadImages(images, vvImageReader::IMAGE);
766 //------------------------------------------------------------------------------
769 //------------------------------------------------------------------------------
770 void vvMainWindow::OpenImageWithTime()
772 QString Extensions = EXTENSIONS;
773 Extensions += ";;All Files (*)";
775 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images With Time"),mInputPathName,Extensions);
778 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
779 std::vector<std::string> vector;
780 for (int i = 0; i < files.size(); i++) {
781 vector.push_back(files[i].toStdString());
783 LoadImages(vector, vvImageReader::IMAGEWITHTIME);
785 //------------------------------------------------------------------------------
788 //------------------------------------------------------------------------------
789 void vvMainWindow::LoadImages(std::vector<std::string> files, vvImageReader::LoadedImageType filetype)
791 //Separate the way to open images and dicoms
793 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME)
794 fileSize = files.size();
798 // For SLICED, we need the number of slices (ndim and #slices)
799 std::vector<unsigned int> nSlices;
800 nSlices.resize(files.size());
801 std::fill(nSlices.begin(), nSlices.end(), 1);
802 if (filetype == vvImageReader::SLICED) {
803 for (int i = 0; i < fileSize; i++) {
804 itk::ImageIOBase::Pointer header = clitk::readImageHeader(files[i]);
805 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
808 QString error = "Cannot open file \n";
809 error += files[i].c_str();
810 QMessageBox::information(this,tr("Reading problem"),error);
813 if (header->GetNumberOfDimensions() < 3) {
815 QString error = "Dimension problem. Cannot slice \n";
816 error += files[i].c_str();
817 QMessageBox::information(this,tr("Reading problem"),error);
820 nSlices[i] = header->GetDimensions( header->GetNumberOfDimensions()-1 );
824 //Only add to the list of recently opened files when a single file is opened,
825 //to avoid polluting the list of recently opened files
826 if (files.size() == 1) {
827 QFileInfo finfo=tr(files[0].c_str());
828 AddToRecentlyOpenedImages(finfo.absoluteFilePath().toStdString());
829 updateRecentlyOpenedFilesMenu(GetRecentlyOpenedImages());
831 //init the progress events
832 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
833 vvProgressDialog progress("Opening " + files[0],fileSize>1);
834 qApp->processEvents();
836 int numberofsuccesulreads=0;
837 //open images as 1 or multiples
838 for (int i = 0; i < fileSize; i++) {
840 progress.SetText("Opening " + files[i]);
841 progress.SetProgress(i,fileSize);
842 qApp->processEvents();
844 for (unsigned int j = 0; j < nSlices[i]; j++) {
845 //read the image and put it in mSlicerManagers
846 vvSlicerManager* imageManager = new vvSlicerManager(4);
847 qApp->processEvents();
849 bool SetImageSucceed=false;
851 // Change filename if an image with the same already exist
852 int number = GetImageDuplicateFilenameNumber(files[i] + std::string("_slice"));
854 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME || filetype == vvImageReader::SLICED)
855 SetImageSucceed = imageManager->SetImage(files[i],filetype, number, j);
857 SetImageSucceed = imageManager->SetImages(files,filetype, number);
859 if (!SetImageSucceed) {
860 QApplication::restoreOverrideCursor();
861 QString error = "Cannot open file \n";
862 error += imageManager->GetLastError().c_str();
863 QMessageBox::information(this,tr("Reading problem"),error);
866 mSlicerManagers.push_back(imageManager);
868 //create an item in the tree with good settings
869 QTreeWidgetItem *item = new QTreeWidgetItem();
870 item->setData(0,Qt::UserRole,files[i].c_str());
871 QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
872 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
873 item->setData(1,Qt::UserRole,tr("image"));
874 item->setToolTip(COLUMN_IMAGE_NAME, imageManager->GetListOfAbsoluteFilePathInOneString("image").c_str());
875 qApp->processEvents();
877 //Create the buttons for reload and close
878 qApp->processEvents();
879 QTreePushButton* cButton = new QTreePushButton;
880 cButton->setItem(item);
881 cButton->setColumn(COLUMN_CLOSE_IMAGE);
882 cButton->setToolTip(tr("close image"));
883 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
884 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
885 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
887 QTreePushButton* rButton = new QTreePushButton;
888 rButton->setItem(item);
889 rButton->setColumn(COLUMN_RELOAD_IMAGE);
890 rButton->setToolTip(tr("reload image"));
891 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
892 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
893 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
895 DataTree->addTopLevelItem(item);
896 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
897 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
899 //set the id of the image
900 QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
901 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
902 mSlicerManagers.back()->SetId(id.toStdString());
904 linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
906 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
907 this,SLOT(CurrentImageChanged(std::string)));
908 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
909 this, SLOT(CurrentPickedImageChanged(std::string)));
910 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
911 this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
912 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
913 this, SLOT(VectorChanged(int,double,double,double, double)));
914 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
915 this, SLOT(OverlayChanged(int,double,double)));
916 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
917 this, SLOT(FusionChanged(int,double)));
918 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
919 this,SLOT(WindowLevelChanged(double, double, int, int)));
920 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
921 this,SLOT(UpdateSlice(int,int)));
922 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
923 this,SLOT(UpdateTSlice(int, int)));
924 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
925 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
926 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
927 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
928 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
929 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
930 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
931 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
932 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
934 numberofsuccesulreads++;
938 if (numberofsuccesulreads) {
939 NOViewWidget->show();
940 NEViewWidget->show();
941 SOViewWidget->show();
942 SEViewWidget->show();
947 // Try to guess default WindowLevel
949 mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
950 if ((range[0] == 0) && (range[1] == 1)) {
951 presetComboBox->setCurrentIndex(5);// binary
956 QApplication::restoreOverrideCursor();
958 //------------------------------------------------------------------------------
960 //------------------------------------------------------------------------------
961 void vvMainWindow::UpdateTree()
963 DataTree->resizeColumnToContents(COLUMN_TREE);
964 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
965 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
966 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
967 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
968 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
969 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
970 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
972 //------------------------------------------------------------------------------
974 //------------------------------------------------------------------------------
975 void vvMainWindow::CurrentImageChanged(std::string id)
977 if (id == mCurrentSelectedImageId) return; // Do nothing
979 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
980 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
983 DataTree->topLevelItem(i)->setSelected(0);
985 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
986 DataTree->topLevelItem(i)->child(child)->setSelected(0);
989 DataTree->topLevelItem(selected)->setSelected(1);
990 mCurrentSelectedImageId = id;
991 emit SelectedImageHasChanged(mSlicerManagers[selected]);
993 //------------------------------------------------------------------------------
995 //------------------------------------------------------------------------------
996 void vvMainWindow::CurrentPickedImageChanged(std::string id)
998 if (id == mCurrentPickedImageId) return; // Do nothing
1000 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1001 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
1004 DataTree->topLevelItem(i)->setSelected(0);
1006 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
1007 DataTree->topLevelItem(i)->child(child)->setSelected(0);
1010 DataTree->topLevelItem(selected)->setSelected(1);
1011 mCurrentPickedImageId = id;
1012 mCurrentPickedImageIndex = selected;
1014 //------------------------------------------------------------------------------
1016 //------------------------------------------------------------------------------
1017 void vvMainWindow::ImageInfoChanged()
1019 contextActions[6]->setEnabled(1);
1020 contextActions[5]->setEnabled(1);
1021 actionSave_As->setEnabled(1);
1022 actionAdd_VF_to_current_Image->setEnabled(1);
1023 actionAdd_fusion_image->setEnabled(1);
1024 actionNorth_East_Window->setEnabled(1);
1025 actionNorth_West_Window->setEnabled(1);
1026 actionSouth_East_Window->setEnabled(1);
1027 actionSouth_West_Window->setEnabled(1);
1028 vvToolManager::GetInstance()->EnableToolsInMenu(this, true);
1029 inverseButton->setEnabled(1);
1031 goToCursorPushButton->setEnabled(1);
1033 if (DataTree->selectedItems().size()) {
1034 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1036 colorMapComboBox->setEnabled(1);
1037 for (int i = 0; i < DataTree->topLevelItem(index)->childCount(); i++) {
1038 if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
1039 DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion") {
1040 colorMapComboBox->setEnabled(0);
1045 std::vector<double> origin;
1046 std::vector<double> inputSpacing;
1047 std::vector<int> inputSize;
1048 std::vector<double> sizeMM;
1049 vtkSmartPointer<vtkMatrix4x4> transformation;
1052 QString inputSizeInBytes;
1053 QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1055 if (mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size() > 1 || playMode == 1) {
1056 playButton->setEnabled(1);
1057 frameRateLabel->setEnabled(1);
1058 frameRateSpinBox->setEnabled(1);
1060 playButton->setEnabled(0);
1061 frameRateLabel->setEnabled(0);
1062 frameRateSpinBox->setEnabled(0);
1068 vvImage::Pointer imageSelected;
1069 if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
1070 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1071 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
1072 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
1073 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
1074 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
1075 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
1076 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
1078 else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "contour") {
1079 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1082 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1085 dimension = imageSelected->GetNumberOfDimensions();
1086 origin.resize(dimension);
1087 inputSpacing.resize(dimension);
1088 inputSize.resize(dimension);
1089 sizeMM.resize(dimension);
1090 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1091 for (int i = 0; i < dimension; i++) {
1092 origin[i] = imageSelected->GetOrigin()[i];
1093 inputSpacing[i] = imageSelected->GetSpacing()[i];
1094 inputSize[i] = imageSelected->GetSize()[i];
1095 sizeMM[i] = inputSize[i]*inputSpacing[i];
1096 NPixel *= inputSize[i];
1098 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1100 QString dim = QString::number(dimension) + " (";
1101 dim += pixelType + ")";
1103 infoPanel->setFileName(image);
1104 infoPanel->setDimension(dim);
1105 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1106 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1107 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1108 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1109 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1110 transformation = imageSelected->GetTransform()->GetMatrix();
1111 infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
1113 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1114 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1115 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1116 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1118 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1119 for (int i = 0; i < 4; i++) {
1120 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1121 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1125 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1126 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1127 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1128 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1130 infoPanel->setFileName(image);
1131 infoPanel->setDimension(dim);
1132 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1133 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1134 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1135 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1136 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1138 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1139 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1140 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1141 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1143 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1144 for (int i = 0; i < 4; i++) {
1145 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1146 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1150 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1151 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1152 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1153 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1155 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
1156 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1157 overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
1158 mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
1159 mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
1161 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1162 overlayPanel->getVFProperty(-1,-1,-1);
1164 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
1165 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1166 overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor());
1168 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1169 overlayPanel->getOverlayProperty(-1);
1172 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
1173 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1174 overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
1175 mSlicerManagers[index]->GetFusionThresholdOpacity(),
1176 mSlicerManagers[index]->GetFusionColorMap(),
1177 mSlicerManagers[index]->GetFusionWindow(),
1178 mSlicerManagers[index]->GetFusionLevel());
1180 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1181 overlayPanel->getFusionProperty(-1, -1, -1, -1, -1);
1185 //------------------------------------------------------------------------------
1187 //------------------------------------------------------------------------------
1188 void vvMainWindow::ShowDocumentation()
1190 documentation->show();
1192 //------------------------------------------------------------------------------
1194 //------------------------------------------------------------------------------
1195 void vvMainWindow::PopupRegisterForm(bool checkCanPush)
1197 vvRegisterForm* registerForm = new vvRegisterForm(QUrl("http://www.creatis.insa-lyon.fr/~dsarrut/vvregister/write.php"), getVVSettingsPath(), getSettingsOptionFormat());
1199 registerForm->show();
1201 if(registerForm->canPush()) {
1202 registerForm->show();
1203 registerForm->acquitPushed();//too bad if there is not internet connection anymore.
1207 //------------------------------------------------------------------------------
1209 //------------------------------------------------------------------------------
1210 void vvMainWindow::ShowHelpDialog()
1212 help_dialog->show();
1214 //------------------------------------------------------------------------------
1216 //------------------------------------------------------------------------------
1217 void vvMainWindow::ChangeViewMode()
1220 if (viewMode == 1) {
1224 splitter_3->setSizes(size);
1225 OSplitter->setSizes(size);
1226 DataTree->setColumnHidden(2,1);
1227 DataTree->setColumnHidden(3,1);
1228 DataTree->setColumnHidden(4,1);
1233 splitter_3->setSizes(size);
1234 OSplitter->setSizes(size);
1235 DataTree->setColumnHidden(2,0);
1236 DataTree->setColumnHidden(3,0);
1237 DataTree->setColumnHidden(4,0);
1239 UpdateRenderWindows();
1241 ** I don't know why but for both resized QVTKWidget we also need to render
1242 ** the associated Slicer to redraw crosses.
1244 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1245 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
1246 mSlicerManagers[i]->GetSlicer(0)->Render();
1247 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
1248 mSlicerManagers[i]->GetSlicer(2)->Render();
1251 //------------------------------------------------------------------------------
1253 //------------------------------------------------------------------------------
1254 QString vvMainWindow::GetSizeInBytes(unsigned long size)
1256 QString result = "";// QString::number(size);
1257 //result += " bytes (";
1258 if (size > 1000000000) {
1260 result += QString::number(size);
1261 result += "Gb";//)";
1262 } else if (size > 1000000) {
1264 result += QString::number(size);
1265 result += "Mb";//)";
1266 } else if (size > 1000) {
1268 result += QString::number(size);
1269 result += "kb";//)";
1273 //------------------------------------------------------------------------------
1275 //------------------------------------------------------------------------------
1276 QString vvMainWindow::Get4x4MatrixDoubleAsString(vtkSmartPointer<vtkMatrix4x4> matrix)
1278 std::ostringstream strmatrix;
1280 for (unsigned int i = 0; i < 4; i++) {
1281 for (unsigned int j = 0; j < 4; j++) {
1282 strmatrix.flags(ios::showpos);
1283 strmatrix.width(10);
1284 strmatrix.precision(3);
1285 strmatrix.setf(ios::fixed,ios::floatfield);
1286 strmatrix.fill(' ');
1287 strmatrix << std::left << matrix->GetElement(i, j);
1288 //strmatrix.width(10);
1291 strmatrix << std::endl;
1293 QString result = strmatrix.str().c_str();
1296 //------------------------------------------------------------------------------
1298 //------------------------------------------------------------------------------
1299 QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble)
1302 for (unsigned int i= 0; i < vectorDouble.size(); i++) {
1305 result += QString::number(vectorDouble[i]);
1309 //------------------------------------------------------------------------------
1311 //------------------------------------------------------------------------------
1312 QString vvMainWindow::GetVectorIntAsString(std::vector<int> vectorInt)
1315 for (unsigned int i= 0; i < vectorInt.size(); i++) {
1318 result += QString::number(vectorInt[i]);
1322 //------------------------------------------------------------------------------
1324 //------------------------------------------------------------------------------
1325 int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item)
1327 QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1328 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1329 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1334 //------------------------------------------------------------------------------
1336 //------------------------------------------------------------------------------
1337 QTreeWidgetItem* vvMainWindow::GetItemFromSlicerManager(vvSlicerManager* sm)
1339 QString id = sm->GetId().c_str();
1340 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1341 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1342 return DataTree->topLevelItem(i);
1346 //------------------------------------------------------------------------------
1348 //------------------------------------------------------------------------------
1349 void vvMainWindow::DisplayChanged(QTreeWidgetItem *clickedItem, int column)
1351 if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
1354 // Get parent information (might be the same item)
1355 int slicerManagerIndex = GetSlicerIndexFromItem(clickedItem);
1356 QTreeWidgetItem* clickedParentItem = DataTree->topLevelItem(slicerManagerIndex);
1357 vvSlicer* clickedSlicer = mSlicerManagers[slicerManagerIndex]->GetSlicer(column-1);
1359 // Go over the complete item tree (only 2 levels, parents and children)
1360 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1361 // Trick to avoid redoing twice the job for a key (sr)
1362 mSlicerManagers[i]->GetSlicer(column-1)->GetRenderWindow()->GetInteractor()->SetKeySym("Crap");
1364 QTreeWidgetItem* currentParentItem = DataTree->topLevelItem(i);
1365 if(currentParentItem != clickedParentItem) {
1366 // Not the branch of the clicked item, uncheck all
1369 currentParentItem->setData(column,Qt::CheckStateRole, 0);
1370 mSlicerManagers[i]->UpdateSlicer(column-1, false);
1373 for (int iChild = 0; iChild < currentParentItem->childCount(); iChild++) {
1374 currentParentItem->child(iChild)->setData(column,Qt::CheckStateRole, 0);
1378 // Branch of the clicked one: get check status from actor visibility in slicer
1379 // and toggle the clicked one
1382 bool vis = clickedSlicer->GetActorVisibility("image", 0);
1383 bool draw = clickedSlicer->GetRenderer()->GetDraw();
1385 // Update slicer (after getting visibility)
1386 mSlicerManagers[slicerManagerIndex]->UpdateSlicer(column-1, true);
1387 mSlicerManagers[slicerManagerIndex]->UpdateInfoOnCursorPosition(column-1);
1388 DisplaySliders(slicerManagerIndex, column-1);
1389 if(clickedParentItem == clickedItem) {
1391 vis = !draw || !vis;
1393 clickedSlicer->SetActorVisibility("image", 0, vis);
1394 clickedParentItem->setData(column, Qt::CheckStateRole, vis?2:0);
1397 std::map<std::string, int> actorTypeCounts;
1398 for (int iChild = 0; iChild < clickedParentItem->childCount(); iChild++) {
1399 QTreeWidgetItem* currentChildItem = clickedParentItem->child(iChild);
1400 std::string actorType = currentChildItem->data(1,Qt::UserRole).toString().toStdString();
1401 vis = clickedSlicer->GetActorVisibility(actorType, actorTypeCounts[actorType]);
1402 if(currentChildItem == clickedItem) {
1403 // Toggle or force visibility if it was not on this branch so far
1404 vis = !draw || !vis;
1405 clickedSlicer->SetActorVisibility(actorType, actorTypeCounts[actorType], vis);
1407 currentChildItem->setData(column, Qt::CheckStateRole, vis?2:0);
1408 actorTypeCounts[actorType]++;
1413 clickedSlicer->Render();
1415 //------------------------------------------------------------------------------
1417 void vvMainWindow::InitSlicers()
1419 if (mSlicerManagers.size()) {
1420 mSlicerManagers.back()->GenerateDefaultLookupTable();
1422 mSlicerManagers.back()->SetSlicerWindow(0,NOViewWidget->GetRenderWindow());
1423 mSlicerManagers.back()->SetSlicerWindow(1,NEViewWidget->GetRenderWindow());
1424 mSlicerManagers.back()->SetSlicerWindow(2,SOViewWidget->GetRenderWindow());
1425 mSlicerManagers.back()->SetSlicerWindow(3,SEViewWidget->GetRenderWindow());
1429 //------------------------------------------------------------------------------
1430 void vvMainWindow::InitDisplay()
1432 if (mSlicerManagers.size()) {
1433 //BE CAREFUL : this is absolutely necessary to set the interactor style
1434 //in order to have the same style instanciation for all SlicerManagers in
1436 for (int j = 0; j < 4; j++) {
1437 vvInteractorStyleNavigator* style = vvInteractorStyleNavigator::New();
1438 style->SetAutoAdjustCameraClippingRange(1);
1439 bool AlreadySelected = false;
1440 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1441 mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
1443 //select the image only if previous are not selected
1444 if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1) {
1445 mSlicerManagers[i]->UpdateSlicer(j,1);
1446 AlreadySelected = true;
1447 } else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected) {
1448 if (DataTree->selectedItems().size() == 0)
1449 DataTree->topLevelItem(i)->setSelected(1);
1450 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
1451 mSlicerManagers[i]->UpdateSlicer(j,1);
1452 DisplaySliders(i,j);
1454 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,0);
1455 mSlicerManagers[i]->UpdateSlicer(j,0);
1462 //------------------------------------------------------------------------------
1464 //------------------------------------------------------------------------------
1465 void vvMainWindow::DisplaySliders(int slicer, int window)
1468 mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
1469 int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
1473 tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
1474 int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetTSlice();
1475 bool showHorizontal = false;
1476 bool showVertical = false;
1477 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1478 || (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 2
1479 && mSlicerManagers[slicer]->GetType() != vvImageReader::IMAGEWITHTIME
1480 && mSlicerManagers[slicer]->GetType() != vvImageReader::MERGEDWITHTIME))
1481 showVertical = true;
1482 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1483 || mSlicerManagers[slicer]->GetType() == vvImageReader::IMAGEWITHTIME
1484 || mSlicerManagers[slicer]->GetType() == vvImageReader::MERGEDWITHTIME)
1485 showHorizontal = true;
1488 verticalSliders[window]->show();
1490 verticalSliders[window]->hide();
1491 verticalSliders[window]->setRange(range[0],range[1]);
1492 verticalSliders[window]->setValue(position);
1495 horizontalSliders[window]->show();
1497 horizontalSliders[window]->hide();
1498 horizontalSliders[window]->setRange(tRange[0],tRange[1]);
1499 horizontalSliders[window]->setValue(tPosition);
1501 //------------------------------------------------------------------------------
1503 //------------------------------------------------------------------------------
1504 void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column)
1506 int index = GetSlicerIndexFromItem(item);
1508 if (DataTree->topLevelItem(index) != item) {
1509 QString warning = "Do you really want to close the overlay : ";
1510 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1511 QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
1513 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1514 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1515 if (msgBox.exec() == QMessageBox::AcceptRole) {
1516 std::string overlay_type=item->data(1,Qt::UserRole).toString().toStdString();
1517 int overlay_index=0;
1518 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++) {
1519 if (DataTree->topLevelItem(index)->\
1520 child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1522 if (DataTree->topLevelItem(index)->child(child) == item) break;
1524 mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
1525 mSlicerManagers[index]->SetColorMap(0);
1526 DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
1527 mSlicerManagers[index]->Render();
1529 } else if (DataTree->topLevelItemCount() <= 1) {
1530 QString warning = "Do you really want to close the image : ";
1531 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1532 warning += "\nThis is the last image, you're about to close vv !!!";
1533 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1535 msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
1536 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1537 if (msgBox.exec() == QMessageBox::AcceptRole) {
1541 QString warning = "Do you really want to close the image : ";
1542 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1543 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1545 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1546 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1547 if (msgBox.exec() == QMessageBox::AcceptRole) {
1549 // Tell tools that we close an image
1550 emit AnImageIsBeingClosed(mSlicerManagers[index]);
1552 std::vector<vvSlicerManager*>::iterator Manageriter = mSlicerManagers.begin();
1553 DataTree->takeTopLevelItem(index);
1554 for (int i = 0; i < index; i++) {
1557 linkPanel->removeImage(index);
1558 mSlicerManagers[index]->RemoveActors();
1559 delete mSlicerManagers[index];
1560 mSlicerManagers.erase(Manageriter);
1568 //------------------------------------------------------------------------------
1570 //------------------------------------------------------------------------------
1571 void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column)
1573 // int index = GetSlicerIndexFromItem(item);
1574 // QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1575 // if (item->data(1,Qt::UserRole).toString() == "vector")
1576 // mSlicerManagers[index]->ReloadVF();
1578 // mSlicerManagers[index]->Reload();
1580 // QApplication::restoreOverrideCursor();
1581 int index = GetSlicerIndexFromItem(item);
1582 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1583 QString role=item->data(1,Qt::UserRole).toString();
1584 if ( role == "vector"){
1585 mSlicerManagers[index]->ReloadVF();
1587 else if (role == "overlay"){
1588 mSlicerManagers[index]->ReloadOverlay();
1590 else if (role == "fusion"){
1591 mSlicerManagers[index]->ReloadFusion();
1594 mSlicerManagers[index]->Reload();
1596 // Update view and info
1598 mSlicerManagers[index]->Render();
1599 QApplication::restoreOverrideCursor();
1601 //------------------------------------------------------------------------------
1603 //------------------------------------------------------------------------------
1604 void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value)
1606 infoPanel->setCurrentInfo(visibility,x,y,z,X,Y,Z,value);
1608 //------------------------------------------------------------------------------
1610 //------------------------------------------------------------------------------
1611 void vvMainWindow::VectorChanged(int visibility,double x, double y, double z, double value)
1613 overlayPanel->getCurrentVectorInfo(visibility,x,y,z,value);
1615 //------------------------------------------------------------------------------
1617 //------------------------------------------------------------------------------
1618 void vvMainWindow::OverlayChanged(int visibility, double valueOver, double valueRef)
1620 overlayPanel->getCurrentOverlayInfo(visibility,valueOver, valueRef);
1622 //------------------------------------------------------------------------------
1624 //------------------------------------------------------------------------------
1625 void vvMainWindow::FusionChanged(int visibility, double value)
1627 overlayPanel->getCurrentFusionInfo(visibility,value);
1629 //------------------------------------------------------------------------------
1631 //------------------------------------------------------------------------------
1632 void vvMainWindow::WindowLevelChanged(double window, double level,int preset,int colormap)
1634 windowSpinBox->setValue(window);
1635 levelSpinBox->setValue(level);
1636 colorMapComboBox->setCurrentIndex(colormap);
1637 presetComboBox->setCurrentIndex(preset);
1639 //------------------------------------------------------------------------------
1641 //------------------------------------------------------------------------------
1642 void vvMainWindow::WindowLevelEdited()
1644 presetComboBox->setCurrentIndex(6);
1645 UpdateWindowLevel();
1647 //------------------------------------------------------------------------------
1649 //------------------------------------------------------------------------------
1650 void vvMainWindow::UpdateWindowLevel()
1652 if (DataTree->selectedItems().size()) {
1653 if (presetComboBox->currentIndex() == 7) //For ventilation
1654 colorMapComboBox->setCurrentIndex(5);
1655 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1656 mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
1657 mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
1658 mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
1659 mSlicerManagers[index]->Render();
1660 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1661 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1664 //------------------------------------------------------------------------------
1666 //------------------------------------------------------------------------------
1667 void vvMainWindow::UpdateColorMap()
1669 if (DataTree->selectedItems().size()) {
1670 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1671 mSlicerManagers[index]->SetColorMap(colorMapComboBox->currentIndex());
1672 mSlicerManagers[index]->Render();
1675 //------------------------------------------------------------------------------
1676 void vvMainWindow::SwitchWindowLevel()
1678 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1679 int window = mSlicerManagers[index]->GetColorWindow();
1680 presetComboBox->setCurrentIndex(6);
1681 windowSpinBox->setValue(-window);
1682 UpdateWindowLevel();
1684 //------------------------------------------------------------------------------
1686 //------------------------------------------------------------------------------
1687 void vvMainWindow::ApplyWindowLevelToAllImages()
1689 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1690 if (mSlicerManagers[i] == NULL)
1692 mSlicerManagers[i]->SetColorWindow(windowSpinBox->value());
1693 mSlicerManagers[i]->SetColorLevel(levelSpinBox->value());
1694 mSlicerManagers[i]->SetPreset(6);
1695 mSlicerManagers[i]->Render();
1698 //------------------------------------------------------------------------------
1700 //------------------------------------------------------------------------------
1701 void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
1703 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1704 if (mSlicerManagers[i]->GetId() == id) {
1705 //mSlicerManagers[i]->SetTSlice(temps);
1706 mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
1707 mSlicerManagers[i]->UpdateViews(0,slicer);
1712 //------------------------------------------------------------------------------
1714 //------------------------------------------------------------------------------
1715 void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm, vvSlicer* refSlicer)
1717 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1718 if (id == mSlicerManagers[i]->GetId()) {
1719 mSlicerManagers[i]->UpdateLinkedNavigation(refSlicer);
1723 //------------------------------------------------------------------------------
1725 //------------------------------------------------------------------------------
1726 void vvMainWindow::ShowContextMenu(QPoint point)
1728 if (!DataTree->selectedItems().size()) {
1729 contextActions[1]->setEnabled(0);
1730 contextActions[2]->setEnabled(0);
1731 contextActions[3]->setEnabled(0);
1732 contextActions[4]->setEnabled(0);
1733 contextActions[5]->setEnabled(0);
1734 contextActions[6]->setEnabled(0);
1736 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1737 contextActions[1]->setEnabled(1);
1738 contextActions[2]->setEnabled(
1739 DataTree->itemWidget(DataTree->selectedItems()[0],
1740 COLUMN_RELOAD_IMAGE)->isEnabled());
1741 contextActions[3]->setEnabled(1);
1742 contextActions[5]->setEnabled(1);
1743 contextActions[6]->setEnabled(1);
1745 if (mSlicerManagers[index]->GetDimension() < 3)
1746 contextActions[4]->setEnabled(0);
1748 contextActions[4]->setEnabled(1);
1750 contextMenu.exec(QCursor::pos());
1752 //------------------------------------------------------------------------------
1754 //------------------------------------------------------------------------------
1755 void vvMainWindow::CloseImage()
1757 CloseImage(DataTree->selectedItems()[0],0);
1759 //------------------------------------------------------------------------------
1761 //------------------------------------------------------------------------------
1762 void vvMainWindow::ReloadImage()
1764 ReloadImage(DataTree->selectedItems()[0],0);
1766 //------------------------------------------------------------------------------
1768 //------------------------------------------------------------------------------
1769 void vvMainWindow::SelectOverlayImage()
1771 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1773 //check if one overlay image is added
1774 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1775 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay") {
1776 QString error = "Cannot add more than one compared image\n";
1777 error += "Please remove first ";
1778 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1779 QMessageBox::information(this,tr("Problem adding compared image !"),error);
1783 QString Extensions = EXTENSIONS;
1784 Extensions += ";;All Files (*)";
1785 QString file = QFileDialog::getOpenFileName(this,tr("Load Overlay image"),mInputPathName,Extensions);
1786 if (!file.isEmpty())
1787 AddOverlayImage(index,file);
1789 //------------------------------------------------------------------------------
1791 //------------------------------------------------------------------------------
1792 void vvMainWindow::AddOverlayImage(int index, QString file)
1795 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1796 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1797 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1798 reader->SetFileName(file.toStdString().c_str());
1799 reader->ReadImageInformation();
1800 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1801 int dimension = reader->GetNumberOfDimensions();
1802 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1803 vvProgressDialog progress("Opening " + file.toStdString());
1804 qApp->processEvents();
1806 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1807 if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component)) {
1808 //create an item in the tree with good settings
1809 QTreeWidgetItem *item = new QTreeWidgetItem();
1810 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1811 item->setData(1,Qt::UserRole,tr("overlay"));
1812 QFileInfo fileinfo(file); //Do not show the path
1813 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
1814 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("overlay").c_str());
1815 qApp->processEvents();
1817 for (int j = 1; j <= 4; j++) {
1818 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1821 //Create the buttons for reload and close
1822 qApp->processEvents();
1823 QTreePushButton* cButton = new QTreePushButton;
1824 cButton->setItem(item);
1825 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1826 cButton->setToolTip(tr("close image"));
1827 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1828 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1829 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1831 QTreePushButton* rButton = new QTreePushButton;
1832 rButton->setItem(item);
1833 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1834 rButton->setToolTip(tr("reload image"));
1835 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1836 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1837 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1839 DataTree->topLevelItem(index)->setExpanded(1);
1840 DataTree->topLevelItem(index)->addChild(item);
1841 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1842 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1844 //set the id of the image
1845 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1846 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1848 qApp->processEvents();
1850 QApplication::restoreOverrideCursor();
1852 QApplication::restoreOverrideCursor();
1853 QString error = "Cannot import the new image.\n";
1854 error += mSlicerManagers[index]->GetLastError().c_str();
1855 QMessageBox::information(this,tr("Problem reading image !"),error);
1858 //------------------------------------------------------------------------------
1861 //------------------------------------------------------------------------------
1862 void vvMainWindow::AddROI(int index, QString file)
1865 // Get slice manager
1869 vvImageReader * mReader = new vvImageReader;
1870 mReader->SetInputFilename(filename.toStdString());
1871 mReader->Update(IMAGE);
1872 if (mReader->GetLastError().size() != 0) {
1873 std::cerr << "Error while reading " << filename.toStdString() << std::endl;
1874 QString error = "Cannot open file \n";
1875 error += mReader->GetLastError().c_str();
1876 QMessageBox::information(this,tr("Reading problem"),error);
1880 vvImage::Pointer roi = mReader->GetOutput();
1882 // Create roi in new tool
1883 vvToolStructureSetManager::AddImage(mCurrentSlicerManager, roi);
1886 //------------------------------------------------------------------------------
1888 //------------------------------------------------------------------------------
1889 void vvMainWindow::SelectFusionImage()
1891 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1893 //check if one fusion image is added
1894 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1895 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") {
1896 QString error = "Cannot add more than one fusion image\n";
1897 error += "Please remove first ";
1898 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1899 QMessageBox::information(this,tr("Problem adding fusion image !"),error);
1903 QString Extensions = EXTENSIONS;
1904 Extensions += ";;All Files (*)";
1905 QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
1906 if (!file.isEmpty())
1907 AddFusionImage(index,file);
1909 //------------------------------------------------------------------------------
1911 //------------------------------------------------------------------------------
1912 void vvMainWindow::ResetTransformationToIdentity()
1914 std::string actorType = DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString().toStdString();
1915 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1916 mSlicerManagers[index]->ResetTransformationToIdentity(actorType);
1919 //------------------------------------------------------------------------------
1921 //------------------------------------------------------------------------------
1922 void vvMainWindow::AddFusionImage(int index, QString file)
1924 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1925 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1926 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1927 reader->SetFileName(file.toStdString().c_str());
1928 reader->ReadImageInformation();
1929 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1931 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1932 vvProgressDialog progress("Opening fusion");
1933 qApp->processEvents();
1935 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1936 if (mSlicerManagers[index]->SetFusion(file.toStdString(),
1937 reader->GetNumberOfDimensions(), component)) {
1938 //create an item in the tree with good settings
1939 QTreeWidgetItem *item = new QTreeWidgetItem();
1940 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1941 item->setData(1,Qt::UserRole,tr("fusion"));
1942 QFileInfo fileinfo(filename.c_str()); //Do not show the path
1943 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
1944 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusion").c_str());
1945 qApp->processEvents();
1947 for (int j = 1; j <= 4; j++) {
1948 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1951 //Create the buttons for reload and close
1952 qApp->processEvents();
1953 QTreePushButton* cButton = new QTreePushButton;
1954 cButton->setItem(item);
1955 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1956 cButton->setToolTip(tr("close image"));
1957 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1958 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1959 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1961 QTreePushButton* rButton = new QTreePushButton;
1962 rButton->setItem(item);
1963 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1964 rButton->setToolTip(tr("reload image"));
1965 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1966 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1967 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1969 DataTree->topLevelItem(index)->setExpanded(1);
1970 DataTree->topLevelItem(index)->addChild(item);
1971 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1972 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1974 //set the id of the image
1975 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1976 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1978 qApp->processEvents();
1980 QApplication::restoreOverrideCursor();
1982 QApplication::restoreOverrideCursor();
1983 QString error = "Cannot import the new image.\n";
1984 error += mSlicerManagers[index]->GetLastError().c_str();
1985 QMessageBox::information(this,tr("Problem reading image !"),error);
1988 QString error = "Cannot import the new image.\n";
1989 QMessageBox::information(this,tr("Problem reading image !"),error);
1992 //------------------------------------------------------------------------------
1995 //------------------------------------------------------------------------------
1996 void vvMainWindow::OpenField()
1998 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1999 //check if a vector field has already been added
2000 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
2001 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector") {
2002 QString error = "Cannot add more than one vector field\n";
2003 error += "Please remove first ";
2004 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
2005 QMessageBox::information(this,tr("Problem adding vector field!"),error);
2009 QString Extensions = "Images ( *.mhd)";
2010 Extensions += ";;Images ( *.mha)";
2011 Extensions += ";;Images ( *.vf)";
2012 QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
2013 if (!file.isEmpty())
2014 AddField(file,index);
2016 //------------------------------------------------------------------------------
2019 //------------------------------------------------------------------------------
2020 void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
2022 //create an item in the tree with good settings
2023 QTreeWidgetItem *item = new QTreeWidgetItem();
2024 item->setData(0,Qt::UserRole,filename.toStdString().c_str());
2025 item->setData(1,Qt::UserRole,tr("vector"));
2026 QFileInfo fileinfo(filename); //Do not show the path
2027 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
2028 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("vector").c_str());
2029 qApp->processEvents();
2031 for (int j = 1; j <= 4; j++) {
2032 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2035 //Create the buttons for reload and close
2036 qApp->processEvents();
2037 QTreePushButton* cButton = new QTreePushButton;
2038 cButton->setItem(item);
2039 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2040 cButton->setToolTip(tr("close vector field"));
2041 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2042 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2043 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2045 QTreePushButton* rButton = new QTreePushButton;
2046 rButton->setItem(item);
2047 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2048 rButton->setToolTip(tr("reload vector field"));
2049 rButton->setEnabled(from_disk);
2050 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2051 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2052 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2054 DataTree->topLevelItem(index)->setExpanded(1);
2055 DataTree->topLevelItem(index)->addChild(item);
2056 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2057 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2059 //set the id of the image
2060 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2061 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2063 qApp->processEvents();
2065 QApplication::restoreOverrideCursor();
2067 //------------------------------------------------------------------------------
2070 //------------------------------------------------------------------------------
2071 void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
2073 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2074 vvSlicerManager* imageManager = mSlicerManagers[index];
2075 if (imageManager->SetVF(vf,file.toStdString())) {
2076 AddFieldEntry(file,index,false);
2078 QString error = "Cannot import the vector field for this image.\n";
2079 error += imageManager->GetLastError().c_str();
2080 QMessageBox::information(this,tr("Problem reading VF !"),error);
2082 QApplication::restoreOverrideCursor();
2084 //------------------------------------------------------------------------------
2087 //------------------------------------------------------------------------------
2088 void vvMainWindow::AddField(QString file,int index)
2090 if (QFile::exists(file)) {
2091 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2093 //init the progress events
2094 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2095 vvProgressDialog progress("Opening " + file.toStdString());
2096 qApp->processEvents();
2098 //read the vector and put it in the current mSlicerManager
2099 vvSlicerManager* imageManager = mSlicerManagers[index];
2100 qApp->processEvents();
2102 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2103 if (imageManager->SetVF(file.toStdString())) {
2104 imageManager->Render();
2105 AddFieldEntry(file,index,true);
2107 QApplication::restoreOverrideCursor();
2108 QString error = "Cannot import the vector field for this image.\n";
2109 error += imageManager->GetLastError().c_str();
2110 QMessageBox::information(this,tr("Problem reading VF !"),error);
2113 QMessageBox::information(this,tr("Problem reading VF !"),"File doesn't exist!");
2116 //------------------------------------------------------------------------------
2119 //------------------------------------------------------------------------------
2120 void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width, double r, double g, double b)
2122 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2123 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
2124 for (int i = 0; i < 4; i++) {
2125 mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
2126 mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
2127 mSlicerManagers[index]->GetSlicer(i)->SetVFWidth(width);
2128 mSlicerManagers[index]->GetSlicer(i)->SetVFColor(r,g,b);
2130 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
2132 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(0);
2136 //------------------------------------------------------------------------------
2139 //------------------------------------------------------------------------------
2140 void vvMainWindow::SetOverlayProperty(int color)
2142 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2143 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
2144 mSlicerManagers[index]->SetOverlayColor(color);
2145 mSlicerManagers[index]->SetColorMap(0);
2146 mSlicerManagers[index]->Render();
2149 //------------------------------------------------------------------------------
2151 //------------------------------------------------------------------------------
2152 void vvMainWindow::SetFusionProperty(int opacity, int thresOpacity, int colormap,double window, double level)
2154 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2155 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
2156 mSlicerManagers[index]->SetFusionColorMap(colormap);
2157 mSlicerManagers[index]->SetFusionOpacity(opacity);
2158 mSlicerManagers[index]->SetFusionThresholdOpacity(thresOpacity);
2159 mSlicerManagers[index]->SetFusionWindow(window);
2160 mSlicerManagers[index]->SetFusionLevel(level);
2161 mSlicerManagers[index]->SetColorMap(0);
2162 mSlicerManagers[index]->Render();
2165 //------------------------------------------------------------------------------
2167 //------------------------------------------------------------------------------
2168 void vvMainWindow::SaveAs()
2170 if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
2171 QMessageBox::warning(this,tr("Unsupported type"),tr("Sorry, saving a vector field is unsupported for the moment"));
2175 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2176 int dimension = mSlicerManagers[index]->GetDimension();
2177 QStringList OutputListeFormat;
2178 OutputListeFormat.clear();
2179 if (dimension == 1) {
2180 OutputListeFormat.push_back(".mhd");
2182 if (dimension == 2) {
2183 OutputListeFormat.push_back(".bmp");
2184 OutputListeFormat.push_back(".png");
2185 OutputListeFormat.push_back(".jpeg");
2186 OutputListeFormat.push_back(".tif");
2187 OutputListeFormat.push_back(".mhd");
2188 OutputListeFormat.push_back(".mha");
2189 OutputListeFormat.push_back(".hdr");
2190 OutputListeFormat.push_back(".vox");
2191 } else if (dimension == 3) {
2192 OutputListeFormat.push_back(".mhd");
2193 OutputListeFormat.push_back(".mha");
2194 OutputListeFormat.push_back(".hdr");
2195 OutputListeFormat.push_back(".vox");
2196 } else if (dimension == 4) {
2197 OutputListeFormat.push_back(".mhd");
2198 OutputListeFormat.push_back(".mha");
2200 QString Extensions = "AllFiles(*.*)";
2201 for (int i = 0; i < OutputListeFormat.count(); i++) {
2202 Extensions += ";;Images ( *";
2203 Extensions += OutputListeFormat[i];
2206 QString fileName = QFileDialog::getSaveFileName(this,
2208 mSlicerManagers[index]->GetFileName().c_str(),
2210 if (!fileName.isEmpty()) {
2211 std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
2212 if (OutputListeFormat.contains(
2213 fileformat.c_str())) {
2214 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2215 std::string action = "Saving";
2216 vvProgressDialog progress("Saving "+fileName.toStdString());
2217 qApp->processEvents();
2218 vvImageWriter::Pointer writer = vvImageWriter::New();
2219 writer->SetOutputFileName(fileName.toStdString());
2220 writer->SetInput(mSlicerManagers[index]->GetImage());
2222 QApplication::restoreOverrideCursor();
2223 if (writer->GetLastError().size()) {
2224 QString error = "Saving did not succeed\n";
2225 error += writer->GetLastError().c_str();
2226 QMessageBox::information(this,tr("Saving Problem"),error);
2230 QString error = fileformat.c_str();
2231 if (error.isEmpty())
2232 error += "no file format specified !";
2234 error += " format unknown !!!\n";
2235 QMessageBox::information(this,tr("Saving Problem"),error);
2240 //------------------------------------------------------------------------------
2243 //------------------------------------------------------------------------------
2244 void vvMainWindow::AddLink(QString image1,QString image2)
2246 unsigned int sm1 = 0;
2247 unsigned int sm2 = 0;
2249 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2250 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2251 mSlicerManagers[i]->AddLink(image2.toStdString());
2254 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2255 mSlicerManagers[i]->AddLink(image1.toStdString());
2260 if (linkPanel->isLinkAll()) {
2261 emit UpdateLinkedNavigation(mSlicerManagers[sm1]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2262 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2264 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[sm1], mSlicerManagers[sm1]->GetSlicer(0));
2268 //------------------------------------------------------------------------------
2271 //------------------------------------------------------------------------------
2272 void vvMainWindow::RemoveLink(QString image1,QString image2)
2274 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2275 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2276 mSlicerManagers[i]->RemoveLink(image2.toStdString());
2278 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2279 mSlicerManagers[i]->RemoveLink(image1.toStdString());
2283 //------------------------------------------------------------------------------
2285 //------------------------------------------------------------------------------
2286 void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset)
2289 while(sm != mSlicerManagers[index])
2291 index = (index+offset) % mSlicerManagers.size();
2293 QTreeWidgetItem* item = GetItemFromSlicerManager(mSlicerManagers[index]);
2294 item->setData(slicer+1,Qt::CheckStateRole,2); //change checkbox
2295 CurrentImageChanged(mSlicerManagers[index]->GetId()); //select new image
2296 DisplayChanged(item,slicer+1);
2298 //------------------------------------------------------------------------------
2300 void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
2302 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2303 if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
2304 for (int j = 0; j < 4; j++) {
2305 mSlicerManagers[i]->SetTSliceInSlicer(value,j);
2306 //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
2307 //UpdateTSlice(j,value);
2309 mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
2314 //------------------------------------------------------------------------------
2317 //------------------------------------------------------------------------------
2318 void vvMainWindow::NOHorizontalSliderMoved()
2320 // if (mCurrentTime == NOHorizontalSlider->value()) return;
2321 HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
2322 // mCurrentTime = NOHorizontalSlider->value();
2324 //------------------------------------------------------------------------------
2327 //------------------------------------------------------------------------------
2328 void vvMainWindow::NEHorizontalSliderMoved()
2330 // if (mCurrentTime == NEHorizontalSlider->value()) return;
2331 HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
2332 // mCurrentTime = NEHorizontalSlider->value();
2334 //------------------------------------------------------------------------------
2337 //------------------------------------------------------------------------------
2338 void vvMainWindow::SOHorizontalSliderMoved()
2340 // if (mCurrentTime == SOHorizontalSlider->value()) return;
2341 HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
2342 // mCurrentTime = SOHorizontalSlider->value();
2344 //------------------------------------------------------------------------------
2347 //------------------------------------------------------------------------------
2348 void vvMainWindow::SEHorizontalSliderMoved()
2350 // if (mCurrentTime == SEHorizontalSlider->value()) return;
2351 HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
2352 // mCurrentTime = SEHorizontalSlider->value();
2354 //------------------------------------------------------------------------------
2356 //------------------------------------------------------------------------------
2357 void vvMainWindow::NOVerticalSliderChanged()
2359 static int value=-1;
2360 if (value == NOVerticalSlider->value()) return;
2361 else value = NOVerticalSlider->value();
2362 // int value = NOVerticalSlider->value();
2363 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2364 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2365 if (mSlicerManagers[i]->GetSlicer(0)->GetSlice() != value) {
2366 mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
2367 mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
2369 // If nor Update/Render -> slider not work
2370 // only render = ok navigation, but for contour Update needed but slower ?
2372 mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
2373 //mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2379 //------------------------------------------------------------------------------
2382 //------------------------------------------------------------------------------
2383 void vvMainWindow::NEVerticalSliderChanged()
2385 static int value=-1;
2386 if (value == NEVerticalSlider->value()) return;
2387 else value = NEVerticalSlider->value();
2388 // int value = NEVerticalSlider->value();
2389 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2390 if (DataTree->topLevelItem(i)->data(COLUMN_UR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2391 if (mSlicerManagers[i]->GetSlicer(1)->GetSlice() != value) {
2392 mSlicerManagers[i]->GetSlicer(1)->SetSlice(value);
2393 mSlicerManagers[i]->VerticalSliderHasChanged(1, value);
2394 mSlicerManagers[i]->UpdateSlice(1);
2395 //mSlicerManagers[i]->GetSlicer(1)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2401 //------------------------------------------------------------------------------
2404 //------------------------------------------------------------------------------
2405 void vvMainWindow::SOVerticalSliderChanged()
2407 static int value=-1;
2408 if (value == SOVerticalSlider->value()) return;
2409 else value = SOVerticalSlider->value();
2410 //int value = SOVerticalSlider->value();
2411 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2412 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2413 if (mSlicerManagers[i]->GetSlicer(2)->GetSlice() != value) {
2414 mSlicerManagers[i]->GetSlicer(2)->SetSlice(value);
2415 mSlicerManagers[i]->VerticalSliderHasChanged(2, value);
2416 mSlicerManagers[i]->UpdateSlice(2);
2417 //mSlicerManagers[i]->GetSlicer(2)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2419 // else { DD("avoid SOVerticalSlider slicer update"); }
2424 //------------------------------------------------------------------------------
2427 //------------------------------------------------------------------------------
2428 void vvMainWindow::SEVerticalSliderChanged()
2430 static int value=-1;
2431 if (value == SEVerticalSlider->value()) return;
2432 else value = SEVerticalSlider->value();
2433 // int value = SEVerticalSlider->value();
2434 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2435 if (DataTree->topLevelItem(i)->data(COLUMN_DR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2436 if (mSlicerManagers[i]->GetSlicer(3)->GetSlice() != value) {
2437 mSlicerManagers[i]->GetSlicer(3)->SetSlice(value);
2438 mSlicerManagers[i]->VerticalSliderHasChanged(3, value);
2439 mSlicerManagers[i]->UpdateSlice(3);
2440 //mSlicerManagers[i]->GetSlicer(3)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2446 //------------------------------------------------------------------------------
2449 //------------------------------------------------------------------------------
2450 void vvMainWindow::UpdateSlice(int slicer, int slice)
2452 // DD("vvMainWindow::UpdateSlice");
2456 // if (slice != NOVerticalSlider->value())
2457 NOVerticalSlider->setValue(slice);
2460 NEVerticalSlider->setValue(slice);
2463 SOVerticalSlider->setValue(slice);
2466 SEVerticalSlider->setValue(slice);
2470 // DD("vvMainWindow:UpdateSlice END");
2472 //------------------------------------------------------------------------------
2475 //------------------------------------------------------------------------------
2476 void vvMainWindow::UpdateTSlice(int slicer, int slice)
2480 NOHorizontalSlider->setValue(slice);
2483 NEHorizontalSlider->setValue(slice);
2486 SOHorizontalSlider->setValue(slice);
2489 SEHorizontalSlider->setValue(slice);
2493 //------------------------------------------------------------------------------
2496 //------------------------------------------------------------------------------
2497 void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax)
2499 int position = int((min+max)/2);
2501 NOVerticalSlider->setValue(position);
2502 NOVerticalSlider->setRange(min,max);
2503 NOHorizontalSlider->setRange(tmin,tmax);
2504 } else if (slicer == 1) {
2505 NEVerticalSlider->setValue(position);
2506 NEVerticalSlider->setRange(min,max);
2507 NEHorizontalSlider->setRange(tmin,tmax);
2508 } else if (slicer == 2) {
2509 SOVerticalSlider->setValue(position);
2510 SOVerticalSlider->setRange(min,max);
2511 SOHorizontalSlider->setRange(tmin,tmax);
2512 } else if (slicer == 3) {
2513 SEVerticalSlider->setValue(position);
2514 SEVerticalSlider->setRange(min,max);
2515 SEHorizontalSlider->setRange(tmin,tmax);
2518 //------------------------------------------------------------------------------
2521 //------------------------------------------------------------------------------
2522 void vvMainWindow::SaveNOScreenshot()
2524 SaveScreenshot(NOViewWidget);
2526 //------------------------------------------------------------------------------
2529 //------------------------------------------------------------------------------
2530 void vvMainWindow::SaveNEScreenshot()
2532 SaveScreenshot(NEViewWidget);
2534 //------------------------------------------------------------------------------
2537 //------------------------------------------------------------------------------
2538 void vvMainWindow::SaveSOScreenshot()
2540 SaveScreenshot(SOViewWidget);
2542 //------------------------------------------------------------------------------
2545 //------------------------------------------------------------------------------
2546 void vvMainWindow::SaveSEScreenshot()
2548 SaveScreenshot(SEViewWidget);
2550 //------------------------------------------------------------------------------
2553 //------------------------------------------------------------------------------
2554 void vvMainWindow::SaveScreenshot(QVTKWidget *widget)
2556 QString Extensions = "Images( *.png);;";
2557 Extensions += "Images( *.jpg);;";
2558 Extensions += "Images( *.bmp);;";
2559 Extensions += "Images( *.tif);;";
2560 Extensions += "Images( *.ppm)";
2561 #ifdef VTK_USE_FFMPEG_ENCODER
2562 Extensions += "Images( *.avi)";
2564 #ifdef VTK_USE_MPEG2_ENCODER
2565 Extensions += "Images( *.mpg)";
2568 int smIndex=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2569 QString fileName = QFileDialog::getSaveFileName(this,
2571 itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(),
2574 if (!fileName.isEmpty()) {
2575 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2576 w2i->SetInput(widget->GetRenderWindow());
2578 vtkImageData *image = w2i->GetOutput();
2580 const char *ext = fileName.toStdString().c_str() + strlen(fileName.toStdString().c_str()) - 4;
2581 if (!strcmp(ext, ".bmp")) {
2582 vtkBMPWriter *bmp = vtkBMPWriter::New();
2583 bmp->SetInput(image);
2584 bmp->SetFileName(fileName.toStdString().c_str());
2587 } else if (!strcmp(ext, ".tif")) {
2588 vtkTIFFWriter *tif = vtkTIFFWriter::New();
2589 tif->SetInput(image);
2590 tif->SetFileName(fileName.toStdString().c_str());
2593 } else if (!strcmp(ext, ".ppm")) {
2594 vtkPNMWriter *pnm = vtkPNMWriter::New();
2595 pnm->SetInput(image);
2596 pnm->SetFileName(fileName.toStdString().c_str());
2599 } else if (!strcmp(ext, ".png")) {
2600 vtkPNGWriter *png = vtkPNGWriter::New();
2601 png->SetInput(image);
2602 png->SetFileName(fileName.toStdString().c_str());
2605 } else if (!strcmp(ext, ".jpg")) {
2606 vtkJPEGWriter *jpg = vtkJPEGWriter::New();
2607 jpg->SetInput(image);
2608 jpg->SetFileName(fileName.toStdString().c_str());
2611 #ifdef VTK_USE_FFMPEG_ENCODER
2612 } else if (!strcmp(ext, ".avi")) {
2613 vtkFFMPEGWriter *mpg = vtkFFMPEGWriter::New();
2614 mpg->SetInput(image);
2615 mpg->SetFileName(fileName.toStdString().c_str());
2620 vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
2621 int nSlice = vvImg->GetVTKImages().size();
2622 for(int i=0; i<nSlice; i++) {
2623 mSlicerManagers[smIndex]->SetNextTSlice(0);
2624 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2625 w2i->SetInput(widget->GetRenderWindow());
2627 mpg->SetInput(w2i->GetOutput());
2633 #ifdef VTK_USE_MPEG2_ENCODER
2634 } else if (!strcmp(ext, ".mpg")) {
2635 vtkMPEG2Writer *mpg = vtkMPEG2Writer::New();
2636 mpg->SetInput(image);
2637 mpg->SetFileName(fileName.toStdString().c_str());
2640 vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
2641 int nSlice = vvImg->GetVTKImages().size();
2642 for(int i=0; i<nSlice; i++) {
2643 mSlicerManagers[smIndex]->SetNextTSlice(0);
2644 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2645 w2i->SetInput(widget->GetRenderWindow());
2647 mpg->SetInput(w2i->GetOutput());
2654 QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
2658 //------------------------------------------------------------------------------
2661 //------------------------------------------------------------------------------
2662 void vvMainWindow::GoToCursor()
2664 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2665 for (int column = 1; column < 5; column++) {
2666 if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1) {
2667 double* cursorPos = mSlicerManagers[index]->GetSlicer(column-1)->GetCursorPosition();
2668 mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
2669 cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
2670 mSlicerManagers[index]->UpdateViews(1,column-1);
2671 mSlicerManagers[index]->UpdateLinked(column-1);
2676 //------------------------------------------------------------------------------
2678 //------------------------------------------------------------------------------
2679 void vvMainWindow::PlayPause()
2683 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_play.png")));
2687 int image_number=DataTree->topLevelItemCount();
2689 for (int i=0; i<image_number; i++)
2690 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1) {
2696 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
2697 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2701 //------------------------------------------------------------------------------
2703 //------------------------------------------------------------------------------
2704 void vvMainWindow::PlayNext()
2706 if (playMode && !this->isHidden()) {
2707 int image_number=DataTree->topLevelItemCount();
2708 ///Only play one slicer per SM, and only if the SM is being displayed
2709 for (int i=0; i<image_number; i++)
2710 for (int j=0; j<4; j++)
2711 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1 &&
2712 DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
2713 mSlicerManagers[i]->SetNextTSlice(j);
2716 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2719 //------------------------------------------------------------------------------
2721 void vvMainWindow::ShowLastImage()
2723 if (mSlicerManagers.size() > 1) {
2724 QTreeWidgetItem * item=DataTree->topLevelItem(DataTree->topLevelItemCount()-1);
2725 CurrentImageChanged(mSlicerManagers.back()->GetId()); //select new image
2726 item->setData(1,Qt::CheckStateRole,2); //show the new image in the first panel
2727 DisplayChanged(item,1);
2731 //------------------------------------------------------------------------------
2732 void vvMainWindow::UpdateRenderWindows()
2734 if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
2735 if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
2736 if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
2737 if (SEViewWidget->GetRenderWindow()) SEViewWidget->GetRenderWindow()->Render();
2739 //------------------------------------------------------------------------------
2741 //------------------------------------------------------------------------------
2742 void vvMainWindow::SegmentationOnCurrentImage()
2744 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2746 vvSegmentationDialog segmentation;
2747 segmentation.SetImage(mSlicerManagers[index]->GetSlicer(0)->GetImage());
2748 segmentation.exec();
2750 //------------------------------------------------------------------------------
2752 void vvMainWindow::SurfaceViewerLaunch()
2754 vvSurfaceViewerDialog surfaceViewer;
2755 surfaceViewer.exec();
2757 //------------------------------------------------------------------------------
2760 //------------------------------------------------------------------------------
2761 int vvMainWindow::GetImageDuplicateFilenameNumber(std::string filename)
2764 for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
2765 vvSlicerManager * v = mSlicerManagers[l];
2766 if (v->GetBaseFileName() ==
2767 vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
2768 number = std::max(number, v->GetBaseFileNameNumber()+1);
2773 //------------------------------------------------------------------------------
2776 //------------------------------------------------------------------------------
2777 vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
2779 // Change filename if another image exist with the same name
2780 int number = GetImageDuplicateFilenameNumber(filename);
2782 // Create new SliceManager
2783 vvSlicerManager* slicer_manager = new vvSlicerManager(4);
2784 slicer_manager->SetImage(image);//, IMAGE, number);
2785 // filename = filename+"_"+clitk::toString(number);
2786 slicer_manager->SetFilename(filename, number);
2787 mSlicerManagers.push_back(slicer_manager);
2789 //create an item in the tree with good settings
2790 QTreeWidgetItem *item = new QTreeWidgetItem();
2791 item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
2792 item->setData(1,Qt::UserRole,tr("image"));
2793 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,slicer_manager->GetFileName().c_str());//filename.c_str());
2794 qApp->processEvents();
2796 for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1);
2798 //Create the buttons for reload and close
2799 qApp->processEvents();
2800 QTreePushButton* cButton = new QTreePushButton;
2801 cButton->setItem(item);
2802 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2803 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2804 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2805 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2807 QTreePushButton* rButton = new QTreePushButton;
2808 rButton->setItem(item);
2809 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2810 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2811 rButton->setEnabled(0);
2812 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2813 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2815 DataTree->addTopLevelItem(item);
2816 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2817 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2819 //set the id of the image
2820 QString id = slicer_manager->GetFileName().c_str() + QString::number(mSlicerManagers.size()-1);
2821 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2822 mSlicerManagers.back()->SetId(id.toStdString());
2824 linkPanel->addImage(slicer_manager->GetFileName().c_str()// filename
2825 , id.toStdString());
2827 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
2828 this, SLOT(CurrentImageChanged(std::string)));
2829 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
2830 this, SLOT(CurrentPickedImageChanged(std::string)));
2831 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
2832 this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
2833 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
2834 this, SLOT(VectorChanged(int,double,double,double, double)));
2835 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
2836 this, SLOT(OverlayChanged(int,double,double)));
2837 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
2838 this, SLOT(FusionChanged(int,double)));
2839 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
2840 this,SLOT(WindowLevelChanged(double, double, int, int)));
2841 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
2842 this,SLOT(UpdateSlice(int,int)));
2843 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
2844 this,SLOT(UpdateTSlice(int, int)));
2845 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
2846 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
2847 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
2848 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
2849 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
2850 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
2851 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
2852 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
2853 connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
2855 qApp->processEvents();
2859 qApp->processEvents();
2863 return slicer_manager;
2865 //------------------------------------------------------------------------------
2868 //------------------------------------------------------------------------------
2869 void vvMainWindow::UpdateCurrentSlicer()
2872 if (DataTree->selectedItems().size() > 0) {
2873 index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2875 mSlicerManagerCurrentIndex = index;
2877 //------------------------------------------------------------------------------