1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://www.centreleonberard.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ===========================================================================**/
20 #include <QMessageBox>
21 #include <QInputDialog>
23 #include "QTreePushButton.h"
28 #include "vvMainWindow.h"
29 #include "vvHelpDialog.h"
30 #include "vvRegisterForm.h"
31 #include "vvDocumentation.h"
32 #include "vvProgressDialog.h"
33 #include "vvQDicomSeriesSelector.h"
34 #include "vvSlicerManager.h"
35 #include "clitkImageCommon.h"
37 #include "vvInteractorStyleNavigator.h"
38 #include "vvImageWriter.h"
39 #include "vvSegmentationDialog.h"
40 #include "vvSurfaceViewerDialog.h"
41 #include "vvDeformationDialog.h"
42 #include "vvImageWarp.h"
44 #include "vvMidPosition.h"
46 #include "vvStructSelector.h"
47 #include "vvMeshReader.h"
48 #include "vvSaveState.h"
49 #include "vvReadState.h"
50 #include "clitkConfiguration.h"
54 #include <itkImageFileReader.h>
55 #include <itkByteSwapper.h>
56 #include <itkCommand.h>
57 #include <itkNumericSeriesFileNames.h>
60 #include <vtkImageData.h>
61 #include <vtkImageActor.h>
62 #include <vtkCornerAnnotation.h>
63 #include <vtkRenderWindow.h>
64 #include <vtkRenderWindowInteractor.h>
65 #include <vtkRenderer.h>
66 #include <vtkRendererCollection.h>
67 #include <vtkWindowToImageFilter.h>
68 #include <vtkBMPWriter.h>
69 #include <vtkTIFFWriter.h>
70 #include <vtkPNMWriter.h>
71 #include <vtkPNGWriter.h>
72 #include <vtkJPEGWriter.h>
73 #ifdef VTK_USE_FFMPEG_ENCODER
74 # include <vtkFFMPEGWriter.h>
76 #ifdef VTK_USE_MPEG2_ENCODER
77 # include <vtkMPEG2Writer.h>
79 #include <vtkMatrix4x4.h>
80 #include <vtkTransform.h>
88 #define COLUMN_UL_VIEW 1
89 #define COLUMN_UR_VIEW 2
90 #define COLUMN_DL_VIEW 3
91 #define COLUMN_DR_VIEW 4
92 #define COLUMN_CLOSE_IMAGE 5
93 #define COLUMN_RELOAD_IMAGE 6
94 #define COLUMN_IMAGE_NAME 7
96 #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN )"
99 0,Qt::UserRole full filename
100 1,Qt::CheckStateRole checkbutton UL View
101 1,Qt::UserRole overlay, fusion or vector
102 2,Qt::CheckStateRole checkbutton UR View
103 3,Qt::CheckStateRole checkbutton DL View
104 4,Qt::CheckStateRole checkbutton DR View
106 5,Qt::UserRole mSlicerManager id*/
108 //------------------------------------------------------------------------------
109 vvMainWindow::vvMainWindow():vvMainWindowBase()
111 setupUi(this); // this sets up the GUI
114 mMenuTools = menuTools;
115 // mMenuSegmentation = menuSegmentation;
116 mContextMenu = &contextMenu;
117 mMenuExperimentalTools = menuExperimental;
120 mCurrentSelectedImageId = "";
121 mCurrentPickedImageId = "";
122 mCurrentPickedImageIndex = 0;
124 //Init the contextMenu
125 this->setContextMenuPolicy(Qt::CustomContextMenu);
126 contextActions.resize(0);
127 QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
128 tr("O&pen new Image"));
129 actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
130 connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
131 contextActions.push_back(actionOpen_new_image);
132 contextMenu.addSeparator();
134 QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
135 tr("Close Current Image"));
136 connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
137 contextActions.push_back(actionClose_Image);
139 QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
140 tr("Reload Current Image"));
141 connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
142 contextActions.push_back(actionReload_image);
144 QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
145 tr("Save Current Image"));
146 connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
147 contextActions.push_back(actionSave_image);
149 QAction* actionSave_state = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
150 tr("Save Current State"));
151 connect(actionSave_state,SIGNAL(triggered()),this,SLOT(SaveCurrentState()));
152 contextActions.push_back(actionSave_state);
154 QAction* actionRead_state = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
155 tr("Read Saved State"));
156 connect(actionRead_state,SIGNAL(triggered()),this,SLOT(ReadSavedState()));
157 contextActions.push_back(actionRead_state);
159 contextMenu.addSeparator();
161 contextMenu.addAction(actionAdd_VF_to_current_Image);
162 contextActions.push_back(actionAdd_VF_to_current_Image);
164 QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
165 tr("Add overlay image to current image"));
166 contextMenu.addAction(actionAdd_Overlay_to_current_Image);
167 contextActions.push_back(actionAdd_Overlay_to_current_Image);
169 connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
171 contextMenu.addAction(actionAdd_fusion_image);
172 connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
173 contextActions.push_back(actionAdd_fusion_image);
175 contextMenu.addSeparator();
176 QAction* actionResetMatrix = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/identity.png")),
177 tr("Reset transformation to identity"));
178 connect(actionResetMatrix, SIGNAL(triggered()), this,SLOT(ResetTransformationToIdentity()));
182 QMenu * m = new QMenu(menubar);
184 // m->setObjectName(QString::fromUtf8("TOTOTO"));
185 contextMenu.addMenu(m);
186 QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
188 QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
192 connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
196 mSlicerManagers.resize(0);
206 header.append("Name");
208 DataTree->setHeaderLabels(header);
209 DataTree->resizeColumnToContents(COLUMN_TREE);
210 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
211 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
212 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
213 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
214 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
215 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
216 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
219 documentation = new vvDocumentation();
220 help_dialog = new vvHelpDialog();
221 dicomSeriesSelector = new vvDicomSeriesSelector();
223 inverseButton->setEnabled(0);
224 actionAdd_Overlay_to_current_Image->setEnabled(0);
225 actionSave_As->setEnabled(0);
226 actionAdd_VF_to_current_Image->setEnabled(0);
227 actionAdd_fusion_image->setEnabled(0);
230 verticalSliders.push_back(NOVerticalSlider);
231 verticalSliders.push_back(NEVerticalSlider);
232 verticalSliders.push_back(SOVerticalSlider);
233 verticalSliders.push_back(SEVerticalSlider);
235 for (int i =0; i < 4; i++)
236 verticalSliders[i]->hide();
238 horizontalSliders.push_back(NOHorizontalSlider);
239 horizontalSliders.push_back(NEHorizontalSlider);
240 horizontalSliders.push_back(SOHorizontalSlider);
241 horizontalSliders.push_back(SEHorizontalSlider);
243 for (int i =0; i < 4; i++)
244 horizontalSliders[i]->hide();
247 connect(NOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOVerticalSliderChanged()));
248 connect(NEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEVerticalSliderChanged()));
249 connect(SOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOVerticalSliderChanged()));
250 connect(SEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEVerticalSliderChanged()));
252 connect(NOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOHorizontalSliderMoved()));
253 connect(NEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEHorizontalSliderMoved()));
254 connect(SOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOHorizontalSliderMoved()));
255 connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved()));
258 connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition()));
259 connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration()));
260 connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
261 connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
262 connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
263 connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
264 connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
265 connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
266 connect(actionSlice_Image_As_Multiple_Images,SIGNAL(triggered()),this,SLOT(SliceImages()));
267 connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
268 connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
269 connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
270 connect(actionSave_current_state,SIGNAL(triggered()),this,SLOT(SaveCurrentState()));
271 connect(actionRead_saved_state,SIGNAL(triggered()),this,SLOT(ReadSavedState()));
272 connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
273 connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
274 connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
275 connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
276 connect(actionRegister_vv,SIGNAL(triggered()),this,SLOT(PopupRegisterForm()));
278 ///////////////////////////////////////////////
279 connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
280 connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
281 ///////////////////////////////////////////////
283 actionNorth_East_Window->setEnabled(0);
284 actionNorth_West_Window->setEnabled(0);
285 actionSouth_East_Window->setEnabled(0);
286 actionSouth_West_Window->setEnabled(0);
288 connect(actionNorth_East_Window,SIGNAL(triggered()),this,SLOT(SaveNEScreenshot()));
289 connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
290 connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
291 connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
292 connect(actionSave_all_slices,SIGNAL(triggered()),this,SLOT(SaveScreenshotAllSlices()));
294 connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
295 connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
296 SLOT(DisplayChanged(QTreeWidgetItem*, int)));
298 connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
299 connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
300 connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
301 connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
302 connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
303 connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
304 connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages()));
307 connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
309 #include "vvSaveState.h"
310 connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
311 connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
312 connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double)));
313 connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int,int,double,double)),
314 this,SLOT(SetOverlayProperty(int,int,double,double)));
315 connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,int,double,double)),
316 this,SLOT(SetFusionProperty(int,int,int,double,double)));
317 connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
321 playButton->setEnabled(0);
322 frameRateLabel->setEnabled(0);
323 frameRateSpinBox->setEnabled(0);
324 connect(playButton, SIGNAL(clicked()),this,SLOT(PlayPause()));
325 connect(frameRateSpinBox, SIGNAL(valueChanged(int)),this,SLOT(ChangeFrameRate(int)));
327 goToCursorPushButton->setEnabled(0);
328 connect(goToCursorPushButton, SIGNAL(clicked()),this,SLOT(GoToCursor()));
330 NOViewWidget->hide();
331 NEViewWidget->hide();
332 SOViewWidget->hide();
333 SEViewWidget->hide();
335 //Recently opened files
336 std::list<std::string> recent_files = GetRecentlyOpenedImages();
337 recentlyOpenedFilesMenu=NULL;
338 if ( !recent_files.empty() ) {
339 createRecentlyOpenedFilesMenu();
340 updateRecentlyOpenedFilesMenu(recent_files);
343 // Adding all new tools (insertion in the menu)
344 vvToolManager::GetInstance()->InsertToolsInMenu(this);
345 vvToolManager::GetInstance()->EnableToolsInMenu(this, false);
347 if (!CLITK_EXPERIMENTAL)
348 menuExperimental->menuAction()->setVisible(false);
351 QTimer * timerMemory = new QTimer(this);
352 //timerMemory->setInterval(5);
353 connect(timerMemory, SIGNAL(timeout()), this, SLOT(UpdateMemoryUsage()));
354 timerMemory->start(2000);
356 //------------------------------------------------------------------------------
357 void vvMainWindow::show()
359 vvMainWindowBase::show();
360 PopupRegisterForm(true);
362 //------------------------------------------------------------------------------
363 void vvMainWindow::UpdateMemoryUsage()
365 // clitk::PrintMemory(true);
366 if (clitk::GetMemoryUsageInMb() == 0) infoPanel->setMemoryInMb("NA");
367 else infoPanel->setMemoryInMb(QString::number(clitk::GetMemoryUsageInMb())+" MiB");
369 //------------------------------------------------------------------------------
372 //------------------------------------------------------------------------------
373 void vvMainWindow::createRecentlyOpenedFilesMenu()
375 recentlyOpenedFilesMenu = new QMenu("Recently opened files...");
376 recentlyOpenedFilesMenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
377 menuFile->insertMenu(actionOpen_Image_With_Time,recentlyOpenedFilesMenu);
378 menuFile->insertSeparator(actionOpen_Image_With_Time);
380 //------------------------------------------------------------------------------
383 //------------------------------------------------------------------------------
385 void vvMainWindow::updateRecentlyOpenedFilesMenu(const std::list<std::string> &recent_files)
387 if(recentlyOpenedFilesMenu==NULL) {
388 createRecentlyOpenedFilesMenu();
390 recentlyOpenedFilesMenu->clear();
392 for (std::list<std::string>::const_iterator i = recent_files.begin(); i!=recent_files.end(); i++) {
393 QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")), i->c_str(),this);
394 recentlyOpenedFilesMenu->addAction(current);
395 connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage()));
398 //------------------------------------------------------------------------------
401 //------------------------------------------------------------------------------
402 void vvMainWindow::ComputeMidPosition()
405 int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
406 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
407 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
410 midp.slicer_manager = mSlicerManagers[index];
411 midp.reference_image_index = ref;
412 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
415 QMessageBox::warning(this, "Error computing midposition image",midp.error_message.c_str());
417 QFileInfo info(midp.slicer_manager->GetFileName().c_str());
418 AddImage(midp.output,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_midposition.mhd");
420 QApplication::restoreOverrideCursor();
423 //------------------------------------------------------------------------------
426 //------------------------------------------------------------------------------
427 void vvMainWindow::AddContour(int image_index, vvMesh::Pointer contour, bool propagation)
429 QTreeWidgetItem *item = new QTreeWidgetItem();
430 item->setData(0,Qt::UserRole,"filename.vtk");
431 item->setData(1,Qt::UserRole,tr("contour"));
433 brush.setColor(QColor(contour->r*255,contour->g*255,contour->b*255));
434 brush.setStyle(Qt::SolidPattern);
435 item->setData(COLUMN_IMAGE_NAME,Qt::BackgroundRole,brush);
436 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
438 for (int j = 1; j <= 4; j++)
439 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(image_index)->data(j,Qt::CheckStateRole));
441 QTreePushButton* cButton = new QTreePushButton;
442 cButton->setItem(item);
443 cButton->setColumn(COLUMN_CLOSE_IMAGE);
444 cButton->setToolTip(tr("close image"));
445 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
446 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
447 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
449 QTreePushButton* rButton = new QTreePushButton;
450 rButton->setItem(item);
451 rButton->setColumn(COLUMN_RELOAD_IMAGE);
452 rButton->setToolTip(tr("reload image"));
453 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
454 rButton->setEnabled(false);
456 //connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
457 //this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
459 DataTree->topLevelItem(image_index)->setExpanded(1);
460 DataTree->topLevelItem(image_index)->addChild(item);
461 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
462 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
463 QString id = DataTree->topLevelItem(image_index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
464 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
467 mSlicerManagers[image_index]->AddContour(contour,propagation);
468 mSlicerManagers[image_index]->Render();
470 //------------------------------------------------------------------------------
473 //------------------------------------------------------------------------------
474 void vvMainWindow::OpenVTKContour()
476 if (mSlicerManagers.size() > 0) {
477 QString Extensions = "Images ( *.vtk *.obj)";
478 Extensions += ";;All Files (*)";
479 QString file = QFileDialog::getOpenFileName(this,tr("Open vtkPolyData"),mInputPathName,Extensions);
482 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
483 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
485 reader.SetImage(mSlicerManagers[index]->GetImage());
486 reader.SetModeToVTK();
487 reader.SetFilename(file.toStdString());
489 AddContour(index,reader.GetOutput()[0],false);
490 QApplication::restoreOverrideCursor();
493 //------------------------------------------------------------------------------
496 //------------------------------------------------------------------------------
497 void vvMainWindow::OpenDCStructContour()
499 if (mSlicerManagers.size() > 0) {
500 QString Extensions = "Dicom Files ( *.dcm RS*)";
501 Extensions += ";;All Files (*)";
502 QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
505 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
507 reader.SetFilename(file.toStdString());
508 vvStructSelector selector;
509 selector.SetStructures(reader.GetROINames());
510 if (!mSlicerManagers[index]->GetVF().IsNull())
511 selector.EnablePropagationCheckBox();
512 if (selector.exec()) {
513 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
514 reader.SetSelectedItems(selector.getSelectedItems());
515 reader.SetImage(mSlicerManagers[index]->GetImage());
516 if (selector.PropagationEnabled())
517 reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
519 std::vector<vvMesh::Pointer> contours=reader.GetOutput();
520 for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
521 i!=contours.end(); i++)
522 AddContour(index,*i,selector.PropagationEnabled());
523 QApplication::restoreOverrideCursor();
527 //------------------------------------------------------------------------------
530 //------------------------------------------------------------------------------
531 void vvMainWindow::ComputeDeformableRegistration()
533 if (mSlicerManagers.size() > 0) {
534 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
535 vvDeformationDialog dialog(index,mSlicerManagers);
537 std::string base_name=itksys::SystemTools::GetFilenameWithoutExtension(mSlicerManagers[dialog.GetInputFileIndex()]->GetFileName());
538 AddField(dialog.GetOutput(),dialog.getFieldFile(),dialog.GetInputFileIndex());
539 WarpImage(dialog.GetSelectedSlicer(),dialog.GetReferenceFrameIndex());
541 std::cout << "Error or user cancellation while computing deformation field..." << std::endl;
542 } else QMessageBox::information(this, "Need to open image","You must open an image first.");
544 //------------------------------------------------------------------------------
547 //------------------------------------------------------------------------------
548 void vvMainWindow::WarpImage()
550 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
551 if (!mSlicerManagers[index]->GetVF().IsNull()) {
553 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
554 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
556 WarpImage(mSlicerManagers[index],ref);
559 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field"));
561 //------------------------------------------------------------------------------
564 //------------------------------------------------------------------------------
565 void vvMainWindow::WarpImage(vvSlicerManager* selected_slicer,int reference_phase)
567 if (!selected_slicer->GetVF().IsNull()) {
568 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
569 QFileInfo info(selected_slicer->GetFileName().c_str());
570 vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
571 reference_phase,this);
572 if (warp.ComputeWarpedImage()) {
573 AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
574 AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
575 AddImage(warp.GetJacobianImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_jacobian.mhd");
576 QApplication::restoreOverrideCursor();
578 QApplication::restoreOverrideCursor();
579 QMessageBox::warning(this,tr("Different spacings"),tr("The vector field and image spacings must be the same in order to warp."));
582 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field."));
584 //------------------------------------------------------------------------------
587 //------------------------------------------------------------------------------
588 vvMainWindow::~vvMainWindow()
590 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
591 if (mSlicerManagers[i] != NULL)
592 delete mSlicerManagers[i];
595 //------------------------------------------------------------------------------
597 //------------------------------------------------------------------------------
598 QTabWidget * vvMainWindow::GetTab()
602 //------------------------------------------------------------------------------
605 //------------------------------------------------------------------------------
606 void vvMainWindow::MergeImages()
608 QString Extensions = EXTENSIONS;
609 Extensions += ";;All Files (*)";
610 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images"),mInputPathName,Extensions);
613 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
614 std::vector<std::string> vector;
616 unsigned int currentDim = 0;
617 std::vector<double> currentSpacing;
618 std::vector<int> currentSize;
619 std::vector<double> currentOrigin;
621 for (int i = 0; i < files.size(); i++) {
622 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
623 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
624 reader->SetFileName(files[i].toStdString().c_str());
625 reader->ReadImageInformation();
627 //NOViewWidget->hide();
628 //NEViewWidget->hide();
629 //SOViewWidget->hide();
630 //SEViewWidget->hide();
632 currentDim = reader->GetNumberOfDimensions();
634 for (unsigned int j = 0; j < currentDim; j++) {
637 currentSpacing.resize(currentDim);
638 currentSize.resize(currentDim);
639 currentOrigin.resize(currentDim);
641 currentOrigin[j] = reader->GetOrigin(j);
642 currentSpacing[j] = reader->GetSpacing(j);
643 currentSize[j] = reader->GetDimensions(j);
644 } else if (currentDim != reader->GetNumberOfDimensions()
645 || currentSpacing[j] != reader->GetSpacing(j)
646 || currentSize[j] != (int)reader->GetDimensions(j)
647 || currentOrigin[j] != reader->GetOrigin(j)) {
648 QString error = "Cannot read file (too different from others ";
649 error += files[i].toStdString().c_str();
650 QMessageBox::information(this,tr("Reading problem"),error);
656 vector.push_back(files[i].toStdString());
659 if (vector.size() > 0)
660 LoadImages(vector, vvImageReader::MERGED);
662 //------------------------------------------------------------------------------
664 //------------------------------------------------------------------------------
665 void vvMainWindow::SliceImages()
667 QString Extensions = EXTENSIONS;
668 Extensions += ";;All Files (*)";
670 QStringList files = QFileDialog::getOpenFileNames(this,tr("Slice Images"),mInputPathName,Extensions);
673 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
674 std::vector<std::string> vector;
675 for (int i = 0; i < files.size(); i++)
676 vector.push_back(files[i].toStdString());
677 LoadImages(vector, vvImageReader::SLICED);
679 //------------------------------------------------------------------------------
681 //------------------------------------------------------------------------------
682 void vvMainWindow::MergeImagesWithTime()
684 QString Extensions = EXTENSIONS;
685 Extensions += ";;All Files (*)";
686 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images With Time"),mInputPathName,Extensions);
689 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
690 std::vector<std::string> vector;
692 unsigned int currentDim = 0;
693 std::vector<double> currentSpacing;
694 std::vector<int> currentSize;
695 std::vector<double> currentOrigin;
697 for (int i = 0; i < files.size(); i++) {
698 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
699 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
701 reader->SetFileName(files[i].toStdString().c_str());
702 reader->ReadImageInformation();
704 currentDim = reader->GetNumberOfDimensions();
706 for (unsigned int j = 0; j < currentDim; j++) {
709 currentSpacing.resize(currentDim);
710 currentSize.resize(currentDim);
711 currentOrigin.resize(currentDim);
713 currentOrigin[j] = reader->GetOrigin(j);
714 currentSpacing[j] = reader->GetSpacing(j);
715 currentSize[j] = reader->GetDimensions(j);
716 } else if (currentDim != reader->GetNumberOfDimensions()
717 || currentSpacing[j] != reader->GetSpacing(j)
718 || currentSize[j] != (int)reader->GetDimensions(j)
719 || currentOrigin[j] != reader->GetOrigin(j)) {
720 QString error = "Cannot read file (too different from others ";
721 error += files[i].toStdString().c_str();
722 QMessageBox::information(this,tr("Reading problem"),error);
728 vector.push_back(files[i].toStdString());
730 QString error = "Cannot read file info for ";
731 error += files[i].toStdString().c_str();
733 error += "Maybe you're trying to open an image in an unsupported format?\n";
734 QMessageBox::information(this,tr("Reading problem"),error);
737 sort(vector.begin(),vector.end());
738 if (vector.size() > 1)
739 LoadImages(vector, vvImageReader::MERGEDWITHTIME);
741 QMessageBox::warning(this,tr("Reading problem"),"You need to select at least two images to merge images with time.\nIf you only want to open one image, please use the \"Open Image\" function.");
743 //------------------------------------------------------------------------------
746 //------------------------------------------------------------------------------
747 void vvMainWindow::OpenDicom()
749 std::vector<std::string> files;
751 std::cout << "dicomSeriesSelector " << std::endl;
752 if (dicomSeriesSelector->exec() == QDialog::Accepted) {
753 files = *(dicomSeriesSelector->GetFilenames());
754 LoadImages(files, vvImageReader::DICOM);
757 //------------------------------------------------------------------------------
759 //------------------------------------------------------------------------------
760 void vvMainWindow::OpenImages()
762 QString Extensions = EXTENSIONS;
763 Extensions += ";;All Files (*)";
765 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images"),mInputPathName,Extensions);
768 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
769 std::vector<std::string> vector;
770 for (int i = 0; i < files.size(); i++)
771 vector.push_back(files[i].toStdString());
772 LoadImages(vector, vvImageReader::IMAGE);
774 //------------------------------------------------------------------------------
775 void vvMainWindow::OpenRecentImage()
777 QAction * caller = qobject_cast<QAction*>(sender());
778 std::vector<std::string> images;
779 images.push_back(caller->text().toStdString());
780 mInputPathName = itksys::SystemTools::GetFilenamePath(images[0]).c_str();
781 LoadImages(images, vvImageReader::IMAGE);
783 //------------------------------------------------------------------------------
786 //------------------------------------------------------------------------------
787 void vvMainWindow::OpenImageWithTime()
789 QString Extensions = EXTENSIONS;
790 Extensions += ";;All Files (*)";
792 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images With Time"),mInputPathName,Extensions);
795 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
796 std::vector<std::string> vector;
797 for (int i = 0; i < files.size(); i++) {
798 vector.push_back(files[i].toStdString());
800 LoadImages(vector, vvImageReader::IMAGEWITHTIME);
802 //------------------------------------------------------------------------------
805 //------------------------------------------------------------------------------
806 void vvMainWindow::LoadImages(std::vector<std::string> files, vvImageReader::LoadedImageType filetype)
808 //Separate the way to open images and dicoms
810 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME)
811 fileSize = files.size();
815 // For SLICED, we need the number of slices (ndim and #slices)
816 std::vector<unsigned int> nSlices;
817 nSlices.resize(files.size());
818 std::fill(nSlices.begin(), nSlices.end(), 1);
819 if (filetype == vvImageReader::SLICED) {
820 for (int i = 0; i < fileSize; i++) {
821 itk::ImageIOBase::Pointer header = clitk::readImageHeader(files[i]);
822 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
825 QString error = "Cannot open file \n";
826 error += files[i].c_str();
827 QMessageBox::information(this,tr("Reading problem"),error);
830 if (header->GetNumberOfDimensions() < 3) {
832 QString error = "Dimension problem. Cannot slice \n";
833 error += files[i].c_str();
834 QMessageBox::information(this,tr("Reading problem"),error);
837 nSlices[i] = header->GetDimensions( header->GetNumberOfDimensions()-1 );
841 //Only add to the list of recently opened files when a single file is opened,
842 //to avoid polluting the list of recently opened files
843 if (files.size() == 1) {
844 QFileInfo finfo=tr(files[0].c_str());
845 AddToRecentlyOpenedImages(finfo.absoluteFilePath().toStdString());
846 updateRecentlyOpenedFilesMenu(GetRecentlyOpenedImages());
848 //init the progress events
849 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
850 vvProgressDialog progress("Opening " + files[0],fileSize>1);
851 qApp->processEvents();
853 int numberofsuccesulreads=0;
854 //open images as 1 or multiples
855 for (int i = 0; i < fileSize; i++) {
857 progress.SetText("Opening " + files[i]);
858 progress.SetProgress(i,fileSize);
859 qApp->processEvents();
861 for (unsigned int j = 0; j < nSlices[i]; j++) {
862 //read the image and put it in mSlicerManagers
863 vvSlicerManager* imageManager = new vvSlicerManager(4);
864 qApp->processEvents();
866 bool SetImageSucceed=false;
868 // Change filename if an image with the same already exist
869 int number = GetImageDuplicateFilenameNumber(files[i] + std::string("_slice"));
871 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME || filetype == vvImageReader::SLICED)
872 SetImageSucceed = imageManager->SetImage(files[i],filetype, number, j);
874 SetImageSucceed = imageManager->SetImages(files,filetype, number);
876 if (!SetImageSucceed) {
877 QApplication::restoreOverrideCursor();
878 QString error = "Cannot open file \n";
879 error += imageManager->GetLastError().c_str();
880 QMessageBox::information(this,tr("Reading problem"),error);
883 mSlicerManagers.push_back(imageManager);
885 //create an item in the tree with good settings
886 QTreeWidgetItem *item = new QTreeWidgetItem();
887 item->setData(0,Qt::UserRole,files[i].c_str());
888 QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
889 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
890 item->setData(1,Qt::UserRole,tr("image"));
891 item->setToolTip(COLUMN_IMAGE_NAME, imageManager->GetListOfAbsoluteFilePathInOneString("image").c_str());
892 qApp->processEvents();
894 //Create the buttons for reload and close
895 qApp->processEvents();
896 QTreePushButton* cButton = new QTreePushButton;
897 cButton->setItem(item);
898 cButton->setColumn(COLUMN_CLOSE_IMAGE);
899 cButton->setToolTip(tr("close image"));
900 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
901 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
902 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
904 QTreePushButton* rButton = new QTreePushButton;
905 rButton->setItem(item);
906 rButton->setColumn(COLUMN_RELOAD_IMAGE);
907 rButton->setToolTip(tr("reload image"));
908 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
909 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
910 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
912 DataTree->addTopLevelItem(item);
913 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
914 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
916 //set the id of the image
917 QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
918 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
919 mSlicerManagers.back()->SetId(id.toStdString());
921 linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
923 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
924 this,SLOT(CurrentImageChanged(std::string)));
925 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
926 this, SLOT(CurrentPickedImageChanged(std::string)));
927 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
928 this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
929 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
930 this, SLOT(VectorChanged(int,double,double,double, double)));
931 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
932 this, SLOT(OverlayChanged(int,double,double)));
933 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
934 this, SLOT(FusionChanged(int,double)));
935 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
936 this,SLOT(WindowLevelChanged()));
937 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
938 this,SLOT(UpdateSlice(int,int)));
939 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
940 this,SLOT(UpdateTSlice(int, int)));
941 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
942 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
943 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
944 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
945 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
946 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
947 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
948 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
949 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
951 numberofsuccesulreads++;
955 if (numberofsuccesulreads) {
956 NOViewWidget->show();
957 NEViewWidget->show();
958 SOViewWidget->show();
959 SEViewWidget->show();
964 // Try to guess default WindowLevel
966 mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
967 if ((range[0] == 0) && (range[1] == 1)) {
968 presetComboBox->setCurrentIndex(5);// binary
973 QApplication::restoreOverrideCursor();
975 //------------------------------------------------------------------------------
977 //------------------------------------------------------------------------------
978 void vvMainWindow::UpdateTree()
980 DataTree->resizeColumnToContents(COLUMN_TREE);
981 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
982 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
983 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
984 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
985 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
986 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
987 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
989 //------------------------------------------------------------------------------
991 //------------------------------------------------------------------------------
992 void vvMainWindow::CurrentImageChanged(std::string id)
994 if (id == mCurrentSelectedImageId) return; // Do nothing
996 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
997 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
1000 DataTree->topLevelItem(i)->setSelected(0);
1002 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
1003 DataTree->topLevelItem(i)->child(child)->setSelected(0);
1006 DataTree->topLevelItem(selected)->setSelected(1);
1007 mCurrentSelectedImageId = id;
1008 emit SelectedImageHasChanged(mSlicerManagers[selected]);
1010 //------------------------------------------------------------------------------
1012 //------------------------------------------------------------------------------
1013 void vvMainWindow::CurrentPickedImageChanged(std::string id)
1015 if (id == mCurrentPickedImageId) return; // Do nothing
1017 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1018 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
1021 DataTree->topLevelItem(i)->setSelected(0);
1023 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
1024 DataTree->topLevelItem(i)->child(child)->setSelected(0);
1027 DataTree->topLevelItem(selected)->setSelected(1);
1028 mCurrentPickedImageId = id;
1029 mCurrentPickedImageIndex = selected;
1031 //------------------------------------------------------------------------------
1033 //------------------------------------------------------------------------------
1034 void vvMainWindow::ImageInfoChanged()
1036 contextActions[6]->setEnabled(1);
1037 contextActions[5]->setEnabled(1);
1038 actionSave_As->setEnabled(1);
1039 actionAdd_VF_to_current_Image->setEnabled(1);
1040 actionAdd_fusion_image->setEnabled(1);
1041 actionNorth_East_Window->setEnabled(1);
1042 actionNorth_West_Window->setEnabled(1);
1043 actionSouth_East_Window->setEnabled(1);
1044 actionSouth_West_Window->setEnabled(1);
1045 vvToolManager::GetInstance()->EnableToolsInMenu(this, true);
1046 inverseButton->setEnabled(1);
1048 goToCursorPushButton->setEnabled(1);
1050 if (DataTree->selectedItems().size()) {
1051 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1053 colorMapComboBox->setEnabled(1);
1054 for (int i = 0; i < DataTree->topLevelItem(index)->childCount(); i++) {
1055 if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
1056 DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion") {
1057 colorMapComboBox->setEnabled(0);
1062 std::vector<double> origin;
1063 std::vector<double> inputSpacing;
1064 std::vector<int> inputSize;
1065 std::vector<double> sizeMM;
1066 vtkSmartPointer<vtkMatrix4x4> transformation;
1069 QString inputSizeInBytes;
1070 QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1072 if (mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size() > 1 || playMode == 1) {
1073 playButton->setEnabled(1);
1074 frameRateLabel->setEnabled(1);
1075 frameRateSpinBox->setEnabled(1);
1077 playButton->setEnabled(0);
1078 frameRateLabel->setEnabled(0);
1079 frameRateSpinBox->setEnabled(0);
1085 vvImage::Pointer imageSelected;
1086 if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
1087 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1088 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
1089 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
1090 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
1091 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
1092 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
1093 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
1095 else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "contour") {
1096 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1099 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1102 dimension = imageSelected->GetNumberOfDimensions();
1103 origin.resize(dimension);
1104 inputSpacing.resize(dimension);
1105 inputSize.resize(dimension);
1106 sizeMM.resize(dimension);
1107 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1108 for (int i = 0; i < dimension; i++) {
1109 origin[i] = imageSelected->GetOrigin()[i];
1110 inputSpacing[i] = imageSelected->GetSpacing()[i];
1111 inputSize[i] = imageSelected->GetSize()[i];
1112 sizeMM[i] = inputSize[i]*inputSpacing[i];
1113 NPixel *= inputSize[i];
1115 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1117 QString dim = QString::number(dimension) + " (";
1118 dim += pixelType + ")";
1120 infoPanel->setFileName(image);
1121 infoPanel->setDimension(dim);
1122 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1123 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1124 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1125 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1126 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1127 transformation = imageSelected->GetTransform()->GetMatrix();
1128 infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
1130 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1131 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1132 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1133 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1135 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1136 for (int i = 0; i < 4; i++) {
1137 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1138 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1143 infoPanel->setFileName(image);
1144 infoPanel->setDimension(dim);
1145 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1146 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1147 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1148 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1149 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1151 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1152 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1153 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1154 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1156 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1157 for (int i = 0; i < 4; i++) {
1158 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1159 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1163 WindowLevelChanged();
1165 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
1166 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1167 overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
1168 mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
1169 mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
1171 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1172 overlayPanel->getVFProperty(-1,-1,-1);
1174 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
1175 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1177 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1180 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
1181 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1183 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1187 //------------------------------------------------------------------------------
1189 //------------------------------------------------------------------------------
1190 void vvMainWindow::ShowDocumentation()
1192 documentation->show();
1194 //------------------------------------------------------------------------------
1196 //------------------------------------------------------------------------------
1197 void vvMainWindow::PopupRegisterForm(bool checkCanPush)
1199 vvRegisterForm* registerForm = new vvRegisterForm(QUrl("http://www.creatis.insa-lyon.fr/~dsarrut/vvregister/write.php"), getVVSettingsPath(), getSettingsOptionFormat());
1201 registerForm->show();
1203 if(registerForm->canPush()) {
1204 registerForm->show();
1205 registerForm->acquitPushed();//too bad if there is not internet connection anymore.
1209 //------------------------------------------------------------------------------
1211 //------------------------------------------------------------------------------
1212 void vvMainWindow::ShowHelpDialog()
1214 help_dialog->show();
1216 //------------------------------------------------------------------------------
1218 //------------------------------------------------------------------------------
1219 void vvMainWindow::ChangeViewMode()
1222 if (viewMode == 1) {
1226 splitter_3->setSizes(size);
1227 OSplitter->setSizes(size);
1228 DataTree->setColumnHidden(2,1);
1229 DataTree->setColumnHidden(3,1);
1230 DataTree->setColumnHidden(4,1);
1235 splitter_3->setSizes(size);
1236 OSplitter->setSizes(size);
1237 DataTree->setColumnHidden(2,0);
1238 DataTree->setColumnHidden(3,0);
1239 DataTree->setColumnHidden(4,0);
1241 UpdateRenderWindows();
1243 ** I don't know why but for both resized QVTKWidget we also need to render
1244 ** the associated Slicer to redraw crosses.
1246 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1247 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
1248 mSlicerManagers[i]->GetSlicer(0)->Render();
1249 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
1250 mSlicerManagers[i]->GetSlicer(2)->Render();
1253 //------------------------------------------------------------------------------
1255 //------------------------------------------------------------------------------
1256 QString vvMainWindow::GetSizeInBytes(unsigned long size)
1258 QString result = "";// QString::number(size);
1259 //result += " bytes (";
1260 if (size > 1000000000) {
1262 result += QString::number(size);
1263 result += "Gb";//)";
1264 } else if (size > 1000000) {
1266 result += QString::number(size);
1267 result += "Mb";//)";
1268 } else if (size > 1000) {
1270 result += QString::number(size);
1271 result += "kb";//)";
1275 //------------------------------------------------------------------------------
1277 //------------------------------------------------------------------------------
1278 QString vvMainWindow::Get4x4MatrixDoubleAsString(vtkSmartPointer<vtkMatrix4x4> matrix)
1280 std::ostringstream strmatrix;
1282 for (unsigned int i = 0; i < 4; i++) {
1283 for (unsigned int j = 0; j < 4; j++) {
1284 strmatrix.flags(ios::showpos);
1285 strmatrix.width(10);
1286 strmatrix.precision(3);
1287 strmatrix.setf(ios::fixed,ios::floatfield);
1288 strmatrix.fill(' ');
1289 strmatrix << std::left << matrix->GetElement(i, j);
1290 //strmatrix.width(10);
1293 strmatrix << std::endl;
1295 QString result = strmatrix.str().c_str();
1298 //------------------------------------------------------------------------------
1300 //------------------------------------------------------------------------------
1301 QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble)
1304 for (unsigned int i= 0; i < vectorDouble.size(); i++) {
1307 result += QString::number(vectorDouble[i]);
1311 //------------------------------------------------------------------------------
1313 //------------------------------------------------------------------------------
1314 QString vvMainWindow::GetVectorIntAsString(std::vector<int> vectorInt)
1317 for (unsigned int i= 0; i < vectorInt.size(); i++) {
1320 result += QString::number(vectorInt[i]);
1324 //------------------------------------------------------------------------------
1326 //------------------------------------------------------------------------------
1327 int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item)
1329 QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1330 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1331 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1336 //------------------------------------------------------------------------------
1338 //------------------------------------------------------------------------------
1339 QTreeWidgetItem* vvMainWindow::GetItemFromSlicerManager(vvSlicerManager* sm)
1341 QString id = sm->GetId().c_str();
1342 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1343 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1344 return DataTree->topLevelItem(i);
1348 //------------------------------------------------------------------------------
1350 //------------------------------------------------------------------------------
1351 void vvMainWindow::DisplayChanged(QTreeWidgetItem *clickedItem, int column)
1353 if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
1356 // Get parent information (might be the same item)
1357 int slicerManagerIndex = GetSlicerIndexFromItem(clickedItem);
1358 QTreeWidgetItem* clickedParentItem = DataTree->topLevelItem(slicerManagerIndex);
1359 vvSlicer* clickedSlicer = mSlicerManagers[slicerManagerIndex]->GetSlicer(column-1);
1361 // Go over the complete item tree (only 2 levels, parents and children)
1362 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1363 // Trick to avoid redoing twice the job for a key (sr)
1364 mSlicerManagers[i]->GetSlicer(column-1)->GetRenderWindow()->GetInteractor()->SetKeySym("Crap");
1366 QTreeWidgetItem* currentParentItem = DataTree->topLevelItem(i);
1367 if(currentParentItem != clickedParentItem) {
1368 // Not the branch of the clicked item, uncheck all
1371 currentParentItem->setData(column,Qt::CheckStateRole, 0);
1372 mSlicerManagers[i]->UpdateSlicer(column-1, false);
1375 for (int iChild = 0; iChild < currentParentItem->childCount(); iChild++) {
1376 currentParentItem->child(iChild)->setData(column,Qt::CheckStateRole, 0);
1380 // Branch of the clicked one: get check status from actor visibility in slicer
1381 // and toggle the clicked one
1384 bool vis = clickedSlicer->GetActorVisibility("image", 0);
1385 bool draw = clickedSlicer->GetRenderer()->GetDraw();
1387 // Update slicer (after getting visibility)
1388 mSlicerManagers[slicerManagerIndex]->UpdateSlicer(column-1, true);
1389 mSlicerManagers[slicerManagerIndex]->UpdateInfoOnCursorPosition(column-1);
1390 DisplaySliders(slicerManagerIndex, column-1);
1391 if(clickedParentItem == clickedItem) {
1393 vis = !draw || !vis;
1395 clickedSlicer->SetActorVisibility("image", 0, vis);
1396 clickedParentItem->setData(column, Qt::CheckStateRole, vis?2:0);
1399 std::map<std::string, int> actorTypeCounts;
1400 for (int iChild = 0; iChild < clickedParentItem->childCount(); iChild++) {
1401 QTreeWidgetItem* currentChildItem = clickedParentItem->child(iChild);
1402 std::string actorType = currentChildItem->data(1,Qt::UserRole).toString().toStdString();
1403 vis = clickedSlicer->GetActorVisibility(actorType, actorTypeCounts[actorType]);
1404 if(currentChildItem == clickedItem) {
1405 // Toggle or force visibility if it was not on this branch so far
1406 vis = !draw || !vis;
1407 clickedSlicer->SetActorVisibility(actorType, actorTypeCounts[actorType], vis);
1409 currentChildItem->setData(column, Qt::CheckStateRole, vis?2:0);
1410 actorTypeCounts[actorType]++;
1415 clickedSlicer->Render();
1417 //------------------------------------------------------------------------------
1419 void vvMainWindow::InitSlicers()
1421 if (mSlicerManagers.size()) {
1422 mSlicerManagers.back()->GenerateDefaultLookupTable();
1424 mSlicerManagers.back()->SetSlicerWindow(0,NOViewWidget->GetRenderWindow());
1425 mSlicerManagers.back()->SetSlicerWindow(1,NEViewWidget->GetRenderWindow());
1426 mSlicerManagers.back()->SetSlicerWindow(2,SOViewWidget->GetRenderWindow());
1427 mSlicerManagers.back()->SetSlicerWindow(3,SEViewWidget->GetRenderWindow());
1431 //------------------------------------------------------------------------------
1432 void vvMainWindow::InitDisplay()
1434 if (mSlicerManagers.size()) {
1435 //BE CAREFUL : this is absolutely necessary to set the interactor style
1436 //in order to have the same style instanciation for all SlicerManagers in
1438 for (int j = 0; j < 4; j++) {
1439 vvInteractorStyleNavigator* style = vvInteractorStyleNavigator::New();
1440 style->SetAutoAdjustCameraClippingRange(1);
1441 bool AlreadySelected = false;
1442 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1443 mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
1445 //select the image only if previous are not selected
1446 if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1) {
1447 mSlicerManagers[i]->UpdateSlicer(j,1);
1448 AlreadySelected = true;
1449 } else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected) {
1450 if (DataTree->selectedItems().size() == 0)
1451 DataTree->topLevelItem(i)->setSelected(1);
1452 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
1453 mSlicerManagers[i]->UpdateSlicer(j,1);
1454 DisplaySliders(i,j);
1456 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,0);
1457 mSlicerManagers[i]->UpdateSlicer(j,0);
1464 //------------------------------------------------------------------------------
1466 //------------------------------------------------------------------------------
1467 void vvMainWindow::DisplaySliders(int slicer, int window)
1470 mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
1471 int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
1475 tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
1476 int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetTSlice();
1477 bool showHorizontal = false;
1478 bool showVertical = false;
1479 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1480 || (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 2
1481 && mSlicerManagers[slicer]->GetType() != vvImageReader::IMAGEWITHTIME
1482 && mSlicerManagers[slicer]->GetType() != vvImageReader::MERGEDWITHTIME))
1483 showVertical = true;
1484 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1485 || mSlicerManagers[slicer]->GetType() == vvImageReader::IMAGEWITHTIME
1486 || mSlicerManagers[slicer]->GetType() == vvImageReader::MERGEDWITHTIME)
1487 showHorizontal = true;
1490 verticalSliders[window]->show();
1492 verticalSliders[window]->hide();
1493 verticalSliders[window]->setRange(range[0],range[1]);
1494 verticalSliders[window]->setValue(position);
1497 horizontalSliders[window]->show();
1499 horizontalSliders[window]->hide();
1500 horizontalSliders[window]->setRange(tRange[0],tRange[1]);
1501 horizontalSliders[window]->setValue(tPosition);
1503 //------------------------------------------------------------------------------
1505 //------------------------------------------------------------------------------
1506 void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column)
1508 int index = GetSlicerIndexFromItem(item);
1510 if (DataTree->topLevelItem(index) != item) {
1511 QString warning = "Do you really want to close the overlay : ";
1512 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1513 QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
1515 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1516 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1517 if (msgBox.exec() == QMessageBox::AcceptRole) {
1518 std::string overlay_type=item->data(1,Qt::UserRole).toString().toStdString();
1519 int overlay_index=0;
1520 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++) {
1521 if (DataTree->topLevelItem(index)->\
1522 child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1524 if (DataTree->topLevelItem(index)->child(child) == item) break;
1526 mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
1527 mSlicerManagers[index]->SetColorMap(0);
1528 DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
1529 mSlicerManagers[index]->Render();
1531 } else if (DataTree->topLevelItemCount() <= 1) {
1532 QString warning = "Do you really want to close the image : ";
1533 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1534 warning += "\nThis is the last image, you're about to close vv !!!";
1535 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1537 msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
1538 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1539 if (msgBox.exec() == QMessageBox::AcceptRole) {
1543 QString warning = "Do you really want to close the image : ";
1544 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1545 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1547 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1548 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1549 if (msgBox.exec() == QMessageBox::AcceptRole) {
1551 // Tell tools that we close an image
1552 emit AnImageIsBeingClosed(mSlicerManagers[index]);
1554 std::vector<vvSlicerManager*>::iterator Manageriter = mSlicerManagers.begin();
1555 DataTree->takeTopLevelItem(index);
1556 for (int i = 0; i < index; i++) {
1559 linkPanel->removeImage(index);
1560 mSlicerManagers[index]->RemoveActors();
1561 delete mSlicerManagers[index];
1562 mSlicerManagers.erase(Manageriter);
1570 //------------------------------------------------------------------------------
1572 //------------------------------------------------------------------------------
1573 void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column)
1575 // int index = GetSlicerIndexFromItem(item);
1576 // QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1577 // if (item->data(1,Qt::UserRole).toString() == "vector")
1578 // mSlicerManagers[index]->ReloadVF();
1580 // mSlicerManagers[index]->Reload();
1582 // QApplication::restoreOverrideCursor();
1583 int index = GetSlicerIndexFromItem(item);
1584 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1585 QString role=item->data(1,Qt::UserRole).toString();
1586 if ( role == "vector"){
1587 mSlicerManagers[index]->ReloadVF();
1589 else if (role == "overlay"){
1590 mSlicerManagers[index]->ReloadOverlay();
1592 else if (role == "fusion"){
1593 mSlicerManagers[index]->ReloadFusion();
1596 mSlicerManagers[index]->Reload();
1598 // Update view and info
1600 mSlicerManagers[index]->Render();
1601 QApplication::restoreOverrideCursor();
1603 //------------------------------------------------------------------------------
1605 //------------------------------------------------------------------------------
1606 void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value)
1608 infoPanel->setCurrentInfo(visibility,x,y,z,X,Y,Z,value);
1610 //------------------------------------------------------------------------------
1612 //------------------------------------------------------------------------------
1613 void vvMainWindow::VectorChanged(int visibility,double x, double y, double z, double value)
1615 overlayPanel->getCurrentVectorInfo(visibility,x,y,z,value);
1617 //------------------------------------------------------------------------------
1619 //------------------------------------------------------------------------------
1620 void vvMainWindow::OverlayChanged(int visibility, double valueOver, double valueRef)
1622 overlayPanel->getCurrentOverlayInfo(visibility,valueOver, valueRef);
1624 //------------------------------------------------------------------------------
1626 //------------------------------------------------------------------------------
1627 void vvMainWindow::FusionChanged(int visibility, double value)
1629 overlayPanel->getCurrentFusionInfo(visibility,value);
1631 //------------------------------------------------------------------------------
1633 //------------------------------------------------------------------------------
1634 void vvMainWindow::WindowLevelChanged()
1637 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1638 if(index==-1) return;
1639 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1640 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1641 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1642 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1645 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay())
1646 overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor(),
1647 mSlicerManagers[index]->GetLinkOverlayWindowLevel(),
1648 mSlicerManagers[index]->GetOverlayColorWindow(),
1649 mSlicerManagers[index]->GetOverlayColorLevel());
1651 overlayPanel->getOverlayProperty(-1,0,0.,0.);
1654 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion())
1655 overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
1656 mSlicerManagers[index]->GetFusionThresholdOpacity(),
1657 mSlicerManagers[index]->GetFusionColorMap(),
1658 mSlicerManagers[index]->GetFusionWindow(),
1659 mSlicerManagers[index]->GetFusionLevel());
1661 overlayPanel->getFusionProperty(-1, -1, -1, -1, -1);
1663 //------------------------------------------------------------------------------
1665 //------------------------------------------------------------------------------
1666 void vvMainWindow::WindowLevelEdited()
1668 presetComboBox->setCurrentIndex(6);
1669 UpdateWindowLevel();
1671 //------------------------------------------------------------------------------
1673 //------------------------------------------------------------------------------
1674 void vvMainWindow::SetWindowLevel(double w, double l)
1676 windowSpinBox->setValue(w);
1677 levelSpinBox->setValue(l);
1678 presetComboBox->setCurrentIndex(6);
1679 colorMapComboBox->setCurrentIndex(0);
1680 UpdateWindowLevel();
1682 //------------------------------------------------------------------------------
1684 //------------------------------------------------------------------------------
1685 void vvMainWindow::UpdateWindowLevel()
1687 if (DataTree->selectedItems().size()) {
1688 if (presetComboBox->currentIndex() == 7) //For ventilation
1689 colorMapComboBox->setCurrentIndex(5);
1690 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1691 mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
1692 mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
1693 mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
1694 mSlicerManagers[index]->Render();
1695 WindowLevelChanged();
1698 //------------------------------------------------------------------------------
1700 //------------------------------------------------------------------------------
1701 void vvMainWindow::UpdateColorMap()
1703 if (DataTree->selectedItems().size()) {
1704 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1705 mSlicerManagers[index]->SetColorMap(colorMapComboBox->currentIndex());
1706 mSlicerManagers[index]->Render();
1709 //------------------------------------------------------------------------------
1710 void vvMainWindow::SwitchWindowLevel()
1712 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1713 int window = mSlicerManagers[index]->GetColorWindow();
1714 presetComboBox->setCurrentIndex(6);
1715 windowSpinBox->setValue(-window);
1716 UpdateWindowLevel();
1718 //------------------------------------------------------------------------------
1720 //------------------------------------------------------------------------------
1721 void vvMainWindow::ApplyWindowLevelToAllImages()
1723 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1724 if (mSlicerManagers[i] == NULL)
1726 mSlicerManagers[i]->SetColorWindow(windowSpinBox->value());
1727 mSlicerManagers[i]->SetColorLevel(levelSpinBox->value());
1728 mSlicerManagers[i]->SetPreset(6);
1729 mSlicerManagers[i]->Render();
1732 //------------------------------------------------------------------------------
1734 //------------------------------------------------------------------------------
1735 void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
1737 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1738 if (mSlicerManagers[i]->GetId() == id) {
1739 //mSlicerManagers[i]->SetTSlice(temps);
1740 mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
1741 mSlicerManagers[i]->UpdateViews(0,slicer);
1746 //------------------------------------------------------------------------------
1748 //------------------------------------------------------------------------------
1749 void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm, vvSlicer* refSlicer)
1751 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1752 if (id == mSlicerManagers[i]->GetId()) {
1753 mSlicerManagers[i]->UpdateLinkedNavigation(refSlicer);
1757 //------------------------------------------------------------------------------
1759 //------------------------------------------------------------------------------
1760 void vvMainWindow::ShowContextMenu(QPoint point)
1762 if (!DataTree->selectedItems().size()) {
1763 contextActions[1]->setEnabled(0);
1764 contextActions[2]->setEnabled(0);
1765 contextActions[3]->setEnabled(0);
1766 contextActions[4]->setEnabled(0);
1767 contextActions[5]->setEnabled(0);
1768 contextActions[6]->setEnabled(0);
1770 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1771 contextActions[1]->setEnabled(1);
1772 contextActions[2]->setEnabled(
1773 DataTree->itemWidget(DataTree->selectedItems()[0],
1774 COLUMN_RELOAD_IMAGE)->isEnabled());
1775 contextActions[3]->setEnabled(1);
1776 contextActions[5]->setEnabled(1);
1777 contextActions[6]->setEnabled(1);
1779 if (mSlicerManagers[index]->GetDimension() < 3)
1780 contextActions[4]->setEnabled(0);
1782 contextActions[4]->setEnabled(1);
1784 contextMenu.exec(QCursor::pos());
1786 //------------------------------------------------------------------------------
1788 //------------------------------------------------------------------------------
1789 void vvMainWindow::CloseImage()
1791 CloseImage(DataTree->selectedItems()[0],0);
1793 //------------------------------------------------------------------------------
1795 //------------------------------------------------------------------------------
1796 void vvMainWindow::ReloadImage()
1798 ReloadImage(DataTree->selectedItems()[0],0);
1800 //------------------------------------------------------------------------------
1802 //------------------------------------------------------------------------------
1803 void vvMainWindow::SelectOverlayImage()
1805 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1807 //check if one overlay image is added
1808 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1809 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay") {
1810 QString error = "Cannot add more than one compared image\n";
1811 error += "Please remove first ";
1812 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1813 QMessageBox::information(this,tr("Problem adding compared image !"),error);
1817 QString Extensions = EXTENSIONS;
1818 Extensions += ";;All Files (*)";
1819 QString file = QFileDialog::getOpenFileName(this,tr("Load Overlay image"),mInputPathName,Extensions);
1820 if (!file.isEmpty())
1821 AddOverlayImage(index,file);
1823 //------------------------------------------------------------------------------
1825 //------------------------------------------------------------------------------
1826 void vvMainWindow::AddOverlayImage(int index, QString file)
1829 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1830 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1831 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1832 reader->SetFileName(file.toStdString().c_str());
1833 reader->ReadImageInformation();
1834 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1835 int dimension = reader->GetNumberOfDimensions();
1836 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1837 vvProgressDialog progress("Opening " + file.toStdString());
1838 qApp->processEvents();
1840 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1841 if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component)) {
1842 //create an item in the tree with good settings
1843 QTreeWidgetItem *item = new QTreeWidgetItem();
1844 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1845 item->setData(1,Qt::UserRole,tr("overlay"));
1846 QFileInfo fileinfo(file); //Do not show the path
1847 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
1848 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("overlay").c_str());
1849 qApp->processEvents();
1851 for (int j = 1; j <= 4; j++) {
1852 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1855 //Create the buttons for reload and close
1856 qApp->processEvents();
1857 QTreePushButton* cButton = new QTreePushButton;
1858 cButton->setItem(item);
1859 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1860 cButton->setToolTip(tr("close image"));
1861 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1862 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1863 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1865 QTreePushButton* rButton = new QTreePushButton;
1866 rButton->setItem(item);
1867 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1868 rButton->setToolTip(tr("reload image"));
1869 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1870 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1871 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1873 DataTree->topLevelItem(index)->setExpanded(1);
1874 DataTree->topLevelItem(index)->addChild(item);
1875 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1876 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1878 //set the id of the image
1879 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1880 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1882 qApp->processEvents();
1884 QApplication::restoreOverrideCursor();
1886 QApplication::restoreOverrideCursor();
1887 QString error = "Cannot import the new image.\n";
1888 error += mSlicerManagers[index]->GetLastError().c_str();
1889 QMessageBox::information(this,tr("Problem reading image !"),error);
1891 WindowLevelChanged();
1893 //------------------------------------------------------------------------------
1896 //------------------------------------------------------------------------------
1897 void vvMainWindow::AddROI(int index, QString file)
1900 // Get slice manager
1904 vvImageReader * mReader = new vvImageReader;
1905 mReader->SetInputFilename(filename.toStdString());
1906 mReader->Update(IMAGE);
1907 if (mReader->GetLastError().size() != 0) {
1908 std::cerr << "Error while reading " << filename.toStdString() << std::endl;
1909 QString error = "Cannot open file \n";
1910 error += mReader->GetLastError().c_str();
1911 QMessageBox::information(this,tr("Reading problem"),error);
1915 vvImage::Pointer roi = mReader->GetOutput();
1917 // Create roi in new tool
1918 vvToolStructureSetManager::AddImage(mCurrentSlicerManager, roi);
1921 //------------------------------------------------------------------------------
1923 //------------------------------------------------------------------------------
1924 void vvMainWindow::SelectFusionImage()
1926 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1928 //check if one fusion image is added
1929 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1930 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") {
1931 QString error = "Cannot add more than one fusion image\n";
1932 error += "Please remove first ";
1933 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1934 QMessageBox::information(this,tr("Problem adding fusion image !"),error);
1938 QString Extensions = EXTENSIONS;
1939 Extensions += ";;All Files (*)";
1940 QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
1941 if (!file.isEmpty())
1942 AddFusionImage(index,file);
1944 //------------------------------------------------------------------------------
1946 //------------------------------------------------------------------------------
1947 void vvMainWindow::ResetTransformationToIdentity()
1949 std::string actorType = DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString().toStdString();
1950 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1951 mSlicerManagers[index]->ResetTransformationToIdentity(actorType);
1954 //------------------------------------------------------------------------------
1956 //------------------------------------------------------------------------------
1957 void vvMainWindow::AddFusionImage(int index, QString file)
1959 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1960 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1961 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1962 reader->SetFileName(file.toStdString().c_str());
1963 reader->ReadImageInformation();
1964 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1966 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1967 vvProgressDialog progress("Opening fusion");
1968 qApp->processEvents();
1970 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1971 if (mSlicerManagers[index]->SetFusion(file.toStdString(),
1972 reader->GetNumberOfDimensions(), component)) {
1973 //create an item in the tree with good settings
1974 QTreeWidgetItem *item = new QTreeWidgetItem();
1975 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1976 item->setData(1,Qt::UserRole,tr("fusion"));
1977 QFileInfo fileinfo(filename.c_str()); //Do not show the path
1978 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
1979 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusion").c_str());
1980 qApp->processEvents();
1982 for (int j = 1; j <= 4; j++) {
1983 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1986 //Create the buttons for reload and close
1987 qApp->processEvents();
1988 QTreePushButton* cButton = new QTreePushButton;
1989 cButton->setItem(item);
1990 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1991 cButton->setToolTip(tr("close image"));
1992 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1993 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1994 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1996 QTreePushButton* rButton = new QTreePushButton;
1997 rButton->setItem(item);
1998 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1999 rButton->setToolTip(tr("reload image"));
2000 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2001 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2002 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2004 DataTree->topLevelItem(index)->setExpanded(1);
2005 DataTree->topLevelItem(index)->addChild(item);
2006 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2007 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2009 //set the id of the image
2010 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2011 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2013 qApp->processEvents();
2015 QApplication::restoreOverrideCursor();
2017 QApplication::restoreOverrideCursor();
2018 QString error = "Cannot import the new image.\n";
2019 error += mSlicerManagers[index]->GetLastError().c_str();
2020 QMessageBox::information(this,tr("Problem reading image !"),error);
2023 QString error = "Cannot import the new image.\n";
2024 QMessageBox::information(this,tr("Problem reading image !"),error);
2027 //------------------------------------------------------------------------------
2030 //------------------------------------------------------------------------------
2031 void vvMainWindow::OpenField()
2033 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2034 //check if a vector field has already been added
2035 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
2036 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector") {
2037 QString error = "Cannot add more than one vector field\n";
2038 error += "Please remove first ";
2039 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
2040 QMessageBox::information(this,tr("Problem adding vector field!"),error);
2044 QString Extensions = "Images ( *.mhd)";
2045 Extensions += ";;Images ( *.mha)";
2046 Extensions += ";;Images ( *.vf)";
2047 QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
2048 if (!file.isEmpty())
2049 AddField(file,index);
2051 //------------------------------------------------------------------------------
2054 //------------------------------------------------------------------------------
2055 void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
2057 //create an item in the tree with good settings
2058 QTreeWidgetItem *item = new QTreeWidgetItem();
2059 item->setData(0,Qt::UserRole,filename.toStdString().c_str());
2060 item->setData(1,Qt::UserRole,tr("vector"));
2061 QFileInfo fileinfo(filename); //Do not show the path
2062 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
2063 item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("vector").c_str());
2064 qApp->processEvents();
2066 for (int j = 1; j <= 4; j++) {
2067 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2070 //Create the buttons for reload and close
2071 qApp->processEvents();
2072 QTreePushButton* cButton = new QTreePushButton;
2073 cButton->setItem(item);
2074 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2075 cButton->setToolTip(tr("close vector field"));
2076 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2077 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2078 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2080 QTreePushButton* rButton = new QTreePushButton;
2081 rButton->setItem(item);
2082 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2083 rButton->setToolTip(tr("reload vector field"));
2084 rButton->setEnabled(from_disk);
2085 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2086 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2087 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2089 DataTree->topLevelItem(index)->setExpanded(1);
2090 DataTree->topLevelItem(index)->addChild(item);
2091 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2092 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2094 //set the id of the image
2095 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2096 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2098 qApp->processEvents();
2100 QApplication::restoreOverrideCursor();
2102 //------------------------------------------------------------------------------
2105 //------------------------------------------------------------------------------
2106 void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
2108 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2109 vvSlicerManager* imageManager = mSlicerManagers[index];
2110 if (imageManager->SetVF(vf,file.toStdString())) {
2111 AddFieldEntry(file,index,false);
2113 QString error = "Cannot import the vector field for this image.\n";
2114 error += imageManager->GetLastError().c_str();
2115 QMessageBox::information(this,tr("Problem reading VF !"),error);
2117 QApplication::restoreOverrideCursor();
2119 //------------------------------------------------------------------------------
2122 //------------------------------------------------------------------------------
2123 void vvMainWindow::AddField(QString file,int index)
2125 if (QFile::exists(file)) {
2126 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2128 //init the progress events
2129 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2130 vvProgressDialog progress("Opening " + file.toStdString());
2131 qApp->processEvents();
2133 //read the vector and put it in the current mSlicerManager
2134 vvSlicerManager* imageManager = mSlicerManagers[index];
2135 qApp->processEvents();
2137 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2138 if (imageManager->SetVF(file.toStdString())) {
2139 imageManager->Render();
2140 AddFieldEntry(file,index,true);
2142 QApplication::restoreOverrideCursor();
2143 QString error = "Cannot import the vector field for this image.\n";
2144 error += imageManager->GetLastError().c_str();
2145 QMessageBox::information(this,tr("Problem reading VF !"),error);
2148 QMessageBox::information(this,tr("Problem reading VF !"),"File doesn't exist!");
2151 //------------------------------------------------------------------------------
2154 //------------------------------------------------------------------------------
2155 void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width, double r, double g, double b)
2157 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2158 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
2159 for (int i = 0; i < 4; i++) {
2160 mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
2161 mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
2162 mSlicerManagers[index]->GetSlicer(i)->SetVFWidth(width);
2163 mSlicerManagers[index]->GetSlicer(i)->SetVFColor(r,g,b);
2165 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
2167 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(0);
2171 //------------------------------------------------------------------------------
2174 //------------------------------------------------------------------------------
2175 void vvMainWindow::SetOverlayProperty(int color, int linked, double window, double level)
2177 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2178 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
2179 mSlicerManagers[index]->SetOverlayColor(color);
2180 mSlicerManagers[index]->SetColorMap(0);
2181 mSlicerManagers[index]->SetLinkOverlayWindowLevel(linked);
2182 mSlicerManagers[index]->SetOverlayColorWindow(window);
2183 mSlicerManagers[index]->SetOverlayColorLevel(level);
2184 mSlicerManagers[index]->Render();
2187 //------------------------------------------------------------------------------
2189 //------------------------------------------------------------------------------
2190 void vvMainWindow::SetFusionProperty(int opacity, int thresOpacity, int colormap,double window, double level)
2192 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2193 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
2194 mSlicerManagers[index]->SetFusionColorMap(colormap);
2195 mSlicerManagers[index]->SetFusionOpacity(opacity);
2196 mSlicerManagers[index]->SetFusionThresholdOpacity(thresOpacity);
2197 mSlicerManagers[index]->SetFusionWindow(window);
2198 mSlicerManagers[index]->SetFusionLevel(level);
2199 mSlicerManagers[index]->SetColorMap(0);
2200 mSlicerManagers[index]->Render();
2203 //------------------------------------------------------------------------------
2205 //------------------------------------------------------------------------------
2206 void vvMainWindow::SaveAs()
2208 if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
2209 QMessageBox::warning(this,tr("Unsupported type"),tr("Sorry, saving a vector field is unsupported for the moment"));
2213 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2214 int dimension = mSlicerManagers[index]->GetDimension();
2215 QStringList OutputListeFormat;
2216 OutputListeFormat.clear();
2217 if (dimension == 1) {
2218 OutputListeFormat.push_back(".mhd");
2219 OutputListeFormat.push_back(".mha");
2221 if (dimension == 2) {
2222 OutputListeFormat.push_back(".bmp");
2223 OutputListeFormat.push_back(".png");
2224 OutputListeFormat.push_back(".jpeg");
2225 OutputListeFormat.push_back(".tif");
2226 OutputListeFormat.push_back(".mhd");
2227 OutputListeFormat.push_back(".mha");
2228 OutputListeFormat.push_back(".hdr");
2229 OutputListeFormat.push_back(".vox");
2230 } else if (dimension == 3) {
2231 OutputListeFormat.push_back(".mhd");
2232 OutputListeFormat.push_back(".mha");
2233 OutputListeFormat.push_back(".hdr");
2234 OutputListeFormat.push_back(".vox");
2235 } else if (dimension == 4) {
2236 OutputListeFormat.push_back(".mhd");
2237 OutputListeFormat.push_back(".mha");
2239 QString Extensions = "AllFiles(*.*)";
2240 for (int i = 0; i < OutputListeFormat.count(); i++) {
2241 Extensions += ";;Images ( *";
2242 Extensions += OutputListeFormat[i];
2245 QString fileName = QFileDialog::getSaveFileName(this,
2247 mSlicerManagers[index]->GetFileName().c_str(),
2249 if (!fileName.isEmpty()) {
2250 std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
2251 if (OutputListeFormat.contains(
2252 fileformat.c_str())) {
2253 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2254 std::string action = "Saving";
2255 vvProgressDialog progress("Saving "+fileName.toStdString());
2256 qApp->processEvents();
2257 vvImageWriter::Pointer writer = vvImageWriter::New();
2258 writer->SetOutputFileName(fileName.toStdString());
2259 writer->SetInput(mSlicerManagers[index]->GetImage());
2261 QApplication::restoreOverrideCursor();
2262 if (writer->GetLastError().size()) {
2263 QString error = "Saving did not succeed\n";
2264 error += writer->GetLastError().c_str();
2265 QMessageBox::information(this,tr("Saving Problem"),error);
2269 QString error = fileformat.c_str();
2270 if (error.isEmpty())
2271 error += "no file format specified !";
2273 error += " format unknown !!!\n";
2274 QMessageBox::information(this,tr("Saving Problem"),error);
2279 //------------------------------------------------------------------------------
2281 //------------------------------------------------------------------------------
2282 void vvMainWindow::SaveCurrentState()
2284 QString Extensions = "XML Files(*.xml)";
2285 QString fileName = QFileDialog::getSaveFileName(this,
2286 tr("Save Current Window State"),
2290 SaveCurrentStateAs(fileName.toStdString());
2292 //------------------------------------------------------------------------------
2294 //------------------------------------------------------------------------------
2295 void vvMainWindow::SaveCurrentStateAs(const std::string& stateFile)
2297 vvSaveState save_state;
2298 save_state.Run(this, stateFile);
2300 std::cout << "void vvMainWindow::SaveCurrentState()" << std::endl;
2303 //------------------------------------------------------------------------------
2304 void vvMainWindow::ReadSavedState()
2306 QString Extensions = "XML Files(*.xml)";
2307 QString fileName = QFileDialog::getOpenFileName(this,
2308 tr("Load Window State"),
2312 ReadSavedStateFile(fileName.toStdString());
2314 //------------------------------------------------------------------------------
2316 //------------------------------------------------------------------------------
2317 void vvMainWindow::ReadSavedStateFile(const std::string& stateFile)
2319 vvReadState read_state;
2320 read_state.Run(this, stateFile);
2322 //------------------------------------------------------------------------------
2324 //------------------------------------------------------------------------------
2325 void vvMainWindow::AddLink(QString image1,QString image2)
2327 unsigned int sm1 = 0;
2328 unsigned int sm2 = 0;
2330 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2331 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2332 mSlicerManagers[i]->AddLink(image2.toStdString());
2335 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2336 mSlicerManagers[i]->AddLink(image1.toStdString());
2341 if (linkPanel->isLinkAll()) {
2342 emit UpdateLinkedNavigation(mSlicerManagers[sm1]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2343 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2345 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[sm1], mSlicerManagers[sm1]->GetSlicer(0));
2349 //------------------------------------------------------------------------------
2352 //------------------------------------------------------------------------------
2353 void vvMainWindow::RemoveLink(QString image1,QString image2)
2355 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2356 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2357 mSlicerManagers[i]->RemoveLink(image2.toStdString());
2359 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2360 mSlicerManagers[i]->RemoveLink(image1.toStdString());
2364 //------------------------------------------------------------------------------
2366 //------------------------------------------------------------------------------
2367 void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset)
2370 while(sm != mSlicerManagers[index])
2372 index = (index+offset) % mSlicerManagers.size();
2374 QTreeWidgetItem* item = GetItemFromSlicerManager(mSlicerManagers[index]);
2375 item->setData(slicer+1,Qt::CheckStateRole,2); //change checkbox
2376 CurrentImageChanged(mSlicerManagers[index]->GetId()); //select new image
2377 DisplayChanged(item,slicer+1);
2379 //------------------------------------------------------------------------------
2381 void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
2383 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2384 if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
2385 for (int j = 0; j < 4; j++) {
2386 mSlicerManagers[i]->SetTSliceInSlicer(value,j);
2387 //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
2388 //UpdateTSlice(j,value);
2390 mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
2395 //------------------------------------------------------------------------------
2398 //------------------------------------------------------------------------------
2399 void vvMainWindow::NOHorizontalSliderMoved()
2401 // if (mCurrentTime == NOHorizontalSlider->value()) return;
2402 HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
2403 // mCurrentTime = NOHorizontalSlider->value();
2405 //------------------------------------------------------------------------------
2408 //------------------------------------------------------------------------------
2409 void vvMainWindow::NEHorizontalSliderMoved()
2411 // if (mCurrentTime == NEHorizontalSlider->value()) return;
2412 HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
2413 // mCurrentTime = NEHorizontalSlider->value();
2415 //------------------------------------------------------------------------------
2418 //------------------------------------------------------------------------------
2419 void vvMainWindow::SOHorizontalSliderMoved()
2421 // if (mCurrentTime == SOHorizontalSlider->value()) return;
2422 HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
2423 // mCurrentTime = SOHorizontalSlider->value();
2425 //------------------------------------------------------------------------------
2428 //------------------------------------------------------------------------------
2429 void vvMainWindow::SEHorizontalSliderMoved()
2431 // if (mCurrentTime == SEHorizontalSlider->value()) return;
2432 HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
2433 // mCurrentTime = SEHorizontalSlider->value();
2435 //------------------------------------------------------------------------------
2437 //------------------------------------------------------------------------------
2438 void vvMainWindow::NOVerticalSliderChanged()
2440 static int value=-1;
2441 if (value == NOVerticalSlider->value()) return;
2442 else value = NOVerticalSlider->value();
2443 // int value = NOVerticalSlider->value();
2444 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2445 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2446 if (mSlicerManagers[i]->GetSlicer(0)->GetSlice() != value) {
2447 mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
2448 mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
2450 // If nor Update/Render -> slider not work
2451 // only render = ok navigation, but for contour Update needed but slower ?
2453 mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
2454 //mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2460 //------------------------------------------------------------------------------
2463 //------------------------------------------------------------------------------
2464 void vvMainWindow::NEVerticalSliderChanged()
2466 static int value=-1;
2467 if (value == NEVerticalSlider->value()) return;
2468 else value = NEVerticalSlider->value();
2469 // int value = NEVerticalSlider->value();
2470 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2471 if (DataTree->topLevelItem(i)->data(COLUMN_UR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2472 if (mSlicerManagers[i]->GetSlicer(1)->GetSlice() != value) {
2473 mSlicerManagers[i]->GetSlicer(1)->SetSlice(value);
2474 mSlicerManagers[i]->VerticalSliderHasChanged(1, value);
2475 mSlicerManagers[i]->UpdateSlice(1);
2476 //mSlicerManagers[i]->GetSlicer(1)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2482 //------------------------------------------------------------------------------
2485 //------------------------------------------------------------------------------
2486 void vvMainWindow::SOVerticalSliderChanged()
2488 static int value=-1;
2489 if (value == SOVerticalSlider->value()) return;
2490 else value = SOVerticalSlider->value();
2491 //int value = SOVerticalSlider->value();
2492 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2493 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2494 if (mSlicerManagers[i]->GetSlicer(2)->GetSlice() != value) {
2495 mSlicerManagers[i]->GetSlicer(2)->SetSlice(value);
2496 mSlicerManagers[i]->VerticalSliderHasChanged(2, value);
2497 mSlicerManagers[i]->UpdateSlice(2);
2498 //mSlicerManagers[i]->GetSlicer(2)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2500 // else { DD("avoid SOVerticalSlider slicer update"); }
2505 //------------------------------------------------------------------------------
2508 //------------------------------------------------------------------------------
2509 void vvMainWindow::SEVerticalSliderChanged()
2511 static int value=-1;
2512 if (value == SEVerticalSlider->value()) return;
2513 else value = SEVerticalSlider->value();
2514 // int value = SEVerticalSlider->value();
2515 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2516 if (DataTree->topLevelItem(i)->data(COLUMN_DR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2517 if (mSlicerManagers[i]->GetSlicer(3)->GetSlice() != value) {
2518 mSlicerManagers[i]->GetSlicer(3)->SetSlice(value);
2519 mSlicerManagers[i]->VerticalSliderHasChanged(3, value);
2520 mSlicerManagers[i]->UpdateSlice(3);
2521 //mSlicerManagers[i]->GetSlicer(3)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2527 //------------------------------------------------------------------------------
2530 //------------------------------------------------------------------------------
2531 void vvMainWindow::UpdateSlice(int slicer, int slice)
2533 // DD("vvMainWindow::UpdateSlice");
2537 // if (slice != NOVerticalSlider->value())
2538 NOVerticalSlider->setValue(slice);
2541 NEVerticalSlider->setValue(slice);
2544 SOVerticalSlider->setValue(slice);
2547 SEVerticalSlider->setValue(slice);
2551 // DD("vvMainWindow:UpdateSlice END");
2553 //------------------------------------------------------------------------------
2556 //------------------------------------------------------------------------------
2557 void vvMainWindow::UpdateTSlice(int slicer, int slice)
2561 NOHorizontalSlider->setValue(slice);
2564 NEHorizontalSlider->setValue(slice);
2567 SOHorizontalSlider->setValue(slice);
2570 SEHorizontalSlider->setValue(slice);
2574 //------------------------------------------------------------------------------
2577 //------------------------------------------------------------------------------
2578 void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax)
2580 int position = int((min+max)/2);
2582 NOVerticalSlider->setValue(position);
2583 NOVerticalSlider->setRange(min,max);
2584 NOHorizontalSlider->setRange(tmin,tmax);
2585 } else if (slicer == 1) {
2586 NEVerticalSlider->setValue(position);
2587 NEVerticalSlider->setRange(min,max);
2588 NEHorizontalSlider->setRange(tmin,tmax);
2589 } else if (slicer == 2) {
2590 SOVerticalSlider->setValue(position);
2591 SOVerticalSlider->setRange(min,max);
2592 SOHorizontalSlider->setRange(tmin,tmax);
2593 } else if (slicer == 3) {
2594 SEVerticalSlider->setValue(position);
2595 SEVerticalSlider->setRange(min,max);
2596 SEHorizontalSlider->setRange(tmin,tmax);
2599 //------------------------------------------------------------------------------
2602 //------------------------------------------------------------------------------
2603 void vvMainWindow::SaveNOScreenshot()
2605 SaveScreenshot(NOViewWidget);
2607 //------------------------------------------------------------------------------
2610 //------------------------------------------------------------------------------
2611 void vvMainWindow::SaveNEScreenshot()
2613 SaveScreenshot(NEViewWidget);
2615 //------------------------------------------------------------------------------
2618 //------------------------------------------------------------------------------
2619 void vvMainWindow::SaveSOScreenshot()
2621 SaveScreenshot(SOViewWidget);
2623 //------------------------------------------------------------------------------
2626 //------------------------------------------------------------------------------
2627 void vvMainWindow::SaveSEScreenshot()
2629 SaveScreenshot(SEViewWidget);
2631 //------------------------------------------------------------------------------
2634 //------------------------------------------------------------------------------
2635 void vvMainWindow::SaveScreenshotAllSlices()
2637 QVTKWidget *widget = NOViewWidget;
2639 int index = 0;// GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2640 vvSlicerManager * SM = mSlicerManagers[index];
2641 vvImage * image = SM->GetImage();
2642 vvSlicer * slicer = SM->GetSlicer(0);
2643 int orientation = slicer->GetOrientation();
2644 int nbSlices = image->GetSize()[orientation];
2645 vtkSmartPointer<vtkRenderWindow> renderWindow = widget->GetRenderWindow();
2647 // Select filename base
2648 QString filename = QFileDialog::getSaveFileName(this,
2649 tr("Save As (filename will be completed by slice number)"),
2650 itksys::SystemTools::GetFilenamePath(mSlicerManagers[index]->GetFileName()).c_str(),
2651 "Images( *.png);;Images( *.jpg)");
2654 for(uint i=0; i<nbSlices; i++) {
2656 slicer->SetSlice(i); // -> change the slice of the current slicer
2657 SM->UpdateSlice(0); // --> this one emit UpdateSlice
2658 QCoreApplication::flush(); // -> needed to force display of contours
2661 vtkSmartPointer<vtkWindowToImageFilter> windowToImageFilter = vtkSmartPointer<vtkWindowToImageFilter>::New();
2662 windowToImageFilter->SetInput(renderWindow);
2663 windowToImageFilter->SetMagnification(1);
2664 windowToImageFilter->SetInputBufferTypeToRGBA(); //also record the alpha (transparency) channel
2665 windowToImageFilter->Update();
2667 vtkSmartPointer<vtkPNGWriter> writer = vtkSmartPointer<vtkPNGWriter>::New();
2668 std::string fn = itksys::SystemTools::GetFilenameWithoutLastExtension(filename.toStdString());
2669 std::string num = clitk::toString(i);
2670 if (i<10) num = "0"+num;
2671 if (i<100) num = "0"+num;
2672 if (i<1000) num = "0"+num;
2674 fn = itksys::SystemTools::GetFilenamePath(filename.toStdString()) + "/"+ fn
2675 + "_" + num + itksys::SystemTools::GetFilenameLastExtension(filename.toStdString());
2676 writer->SetFileName(fn.c_str());
2677 writer->SetInput(windowToImageFilter->GetOutput());
2681 //------------------------------------------------------------------------------
2684 //------------------------------------------------------------------------------
2685 void vvMainWindow::SaveScreenshot(QVTKWidget *widget)
2687 QString Extensions = "Images( *.png);;";
2688 Extensions += "Images( *.jpg);;";
2689 Extensions += "Images( *.bmp);;";
2690 Extensions += "Images( *.tif);;";
2691 Extensions += "Images( *.ppm)";
2692 #ifdef VTK_USE_FFMPEG_ENCODER
2693 Extensions += "Images( *.avi)";
2695 #ifdef VTK_USE_MPEG2_ENCODER
2696 Extensions += "Images( *.mpg)";
2699 int smIndex=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2700 QString fileName = QFileDialog::getSaveFileName(this,
2702 itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(),
2705 if (!fileName.isEmpty()) {
2706 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2707 w2i->SetInput(widget->GetRenderWindow());
2709 vtkImageData *image = w2i->GetOutput();
2711 const char *ext = fileName.toStdString().c_str() + strlen(fileName.toStdString().c_str()) - 4;
2712 if (!strcmp(ext, ".bmp")) {
2713 vtkBMPWriter *bmp = vtkBMPWriter::New();
2714 bmp->SetInput(image);
2715 bmp->SetFileName(fileName.toStdString().c_str());
2718 } else if (!strcmp(ext, ".tif")) {
2719 vtkTIFFWriter *tif = vtkTIFFWriter::New();
2720 tif->SetInput(image);
2721 tif->SetFileName(fileName.toStdString().c_str());
2724 } else if (!strcmp(ext, ".ppm")) {
2725 vtkPNMWriter *pnm = vtkPNMWriter::New();
2726 pnm->SetInput(image);
2727 pnm->SetFileName(fileName.toStdString().c_str());
2730 } else if (!strcmp(ext, ".png")) {
2731 vtkPNGWriter *png = vtkPNGWriter::New();
2732 png->SetInput(image);
2733 png->SetFileName(fileName.toStdString().c_str());
2736 } else if (!strcmp(ext, ".jpg")) {
2737 vtkJPEGWriter *jpg = vtkJPEGWriter::New();
2738 jpg->SetInput(image);
2739 jpg->SetFileName(fileName.toStdString().c_str());
2742 #ifdef VTK_USE_FFMPEG_ENCODER
2743 } else if (!strcmp(ext, ".avi")) {
2744 vtkFFMPEGWriter *mpg = vtkFFMPEGWriter::New();
2745 mpg->SetInput(image);
2746 mpg->SetFileName(fileName.toStdString().c_str());
2751 vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
2752 int nSlice = vvImg->GetVTKImages().size();
2753 for(int i=0; i<nSlice; i++) {
2754 mSlicerManagers[smIndex]->SetNextTSlice(0);
2755 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2756 w2i->SetInput(widget->GetRenderWindow());
2758 mpg->SetInput(w2i->GetOutput());
2764 #ifdef VTK_USE_MPEG2_ENCODER
2765 } else if (!strcmp(ext, ".mpg")) {
2766 vtkMPEG2Writer *mpg = vtkMPEG2Writer::New();
2767 mpg->SetInput(image);
2768 mpg->SetFileName(fileName.toStdString().c_str());
2771 vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
2772 int nSlice = vvImg->GetVTKImages().size();
2773 for(int i=0; i<nSlice; i++) {
2774 mSlicerManagers[smIndex]->SetNextTSlice(0);
2775 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2776 w2i->SetInput(widget->GetRenderWindow());
2778 mpg->SetInput(w2i->GetOutput());
2785 QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
2789 //------------------------------------------------------------------------------
2792 //------------------------------------------------------------------------------
2793 void vvMainWindow::GoToCursor()
2795 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2796 for (int column = 1; column < 5; column++) {
2797 if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1) {
2798 double* cursorPos = mSlicerManagers[index]->GetSlicer(column-1)->GetCursorPosition();
2799 mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
2800 cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
2801 mSlicerManagers[index]->UpdateViews(1,column-1);
2802 mSlicerManagers[index]->UpdateLinked(column-1);
2807 //------------------------------------------------------------------------------
2809 //------------------------------------------------------------------------------
2810 void vvMainWindow::PlayPause()
2814 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_play.png")));
2818 int image_number=DataTree->topLevelItemCount();
2820 for (int i=0; i<image_number; i++)
2821 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1) {
2827 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
2828 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2832 //------------------------------------------------------------------------------
2834 //------------------------------------------------------------------------------
2835 void vvMainWindow::PlayNext()
2837 if (playMode && !this->isHidden()) {
2838 int image_number=DataTree->topLevelItemCount();
2839 ///Only play one slicer per SM, and only if the SM is being displayed
2840 for (int i=0; i<image_number; i++)
2841 for (int j=0; j<4; j++)
2842 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1 &&
2843 DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
2844 mSlicerManagers[i]->SetNextTSlice(j);
2847 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2850 //------------------------------------------------------------------------------
2852 void vvMainWindow::ShowLastImage()
2854 if (mSlicerManagers.size() > 1) {
2855 QTreeWidgetItem * item=DataTree->topLevelItem(DataTree->topLevelItemCount()-1);
2856 CurrentImageChanged(mSlicerManagers.back()->GetId()); //select new image
2857 item->setData(1,Qt::CheckStateRole,2); //show the new image in the first panel
2858 DisplayChanged(item,1);
2862 //------------------------------------------------------------------------------
2863 void vvMainWindow::UpdateRenderWindows()
2865 if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
2866 if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
2867 if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
2868 if (SEViewWidget->GetRenderWindow()) SEViewWidget->GetRenderWindow()->Render();
2870 //------------------------------------------------------------------------------
2872 //------------------------------------------------------------------------------
2873 void vvMainWindow::SegmentationOnCurrentImage()
2875 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2877 vvSegmentationDialog segmentation;
2878 segmentation.SetImage(mSlicerManagers[index]->GetSlicer(0)->GetImage());
2879 segmentation.exec();
2881 //------------------------------------------------------------------------------
2883 void vvMainWindow::SurfaceViewerLaunch()
2885 vvSurfaceViewerDialog surfaceViewer;
2886 surfaceViewer.exec();
2888 //------------------------------------------------------------------------------
2891 //------------------------------------------------------------------------------
2892 int vvMainWindow::GetImageDuplicateFilenameNumber(std::string filename)
2895 for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
2896 vvSlicerManager * v = mSlicerManagers[l];
2897 if (v->GetBaseFileName() ==
2898 vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
2899 number = std::max(number, v->GetBaseFileNameNumber()+1);
2904 //------------------------------------------------------------------------------
2907 //------------------------------------------------------------------------------
2908 vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
2910 // Change filename if another image exist with the same name
2911 int number = GetImageDuplicateFilenameNumber(filename);
2913 // Create new SliceManager
2914 vvSlicerManager* slicer_manager = new vvSlicerManager(4);
2915 slicer_manager->SetImage(image);//, IMAGE, number);
2916 // filename = filename+"_"+clitk::toString(number);
2917 slicer_manager->SetFilename(filename, number);
2918 mSlicerManagers.push_back(slicer_manager);
2920 //create an item in the tree with good settings
2921 QTreeWidgetItem *item = new QTreeWidgetItem();
2922 item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
2923 item->setData(1,Qt::UserRole,tr("image"));
2924 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,slicer_manager->GetFileName().c_str());//filename.c_str());
2925 qApp->processEvents();
2927 for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1);
2929 //Create the buttons for reload and close
2930 qApp->processEvents();
2931 QTreePushButton* cButton = new QTreePushButton;
2932 cButton->setItem(item);
2933 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2934 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2935 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2936 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2938 QTreePushButton* rButton = new QTreePushButton;
2939 rButton->setItem(item);
2940 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2941 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2942 rButton->setEnabled(0);
2943 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2944 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2946 DataTree->addTopLevelItem(item);
2947 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2948 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2950 //set the id of the image
2951 QString id = slicer_manager->GetFileName().c_str() + QString::number(mSlicerManagers.size()-1);
2952 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2953 mSlicerManagers.back()->SetId(id.toStdString());
2955 linkPanel->addImage(slicer_manager->GetFileName().c_str()// filename
2956 , id.toStdString());
2958 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
2959 this, SLOT(CurrentImageChanged(std::string)));
2960 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
2961 this, SLOT(CurrentPickedImageChanged(std::string)));
2962 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
2963 this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
2964 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
2965 this, SLOT(VectorChanged(int,double,double,double, double)));
2966 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
2967 this, SLOT(OverlayChanged(int,double,double)));
2968 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
2969 this, SLOT(FusionChanged(int,double)));
2970 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
2971 this,SLOT(WindowLevelChanged()));
2972 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
2973 this,SLOT(UpdateSlice(int,int)));
2974 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
2975 this,SLOT(UpdateTSlice(int, int)));
2976 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
2977 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
2978 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
2979 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
2980 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
2981 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
2982 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
2983 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
2984 connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
2986 qApp->processEvents();
2990 qApp->processEvents();
2994 return slicer_manager;
2996 //------------------------------------------------------------------------------
2999 //------------------------------------------------------------------------------
3000 void vvMainWindow::UpdateCurrentSlicer()
3003 if (DataTree->selectedItems().size() > 0) {
3004 index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
3006 mSlicerManagerCurrentIndex = index;
3008 //------------------------------------------------------------------------------