1 /*=========================================================================
4 Module: $RCSfile: vvMainWindow.cxx,v $
6 Date: $Date: 2010/03/01 07:37:25 $
7 Version: $Revision: 1.13 $
8 Author : Pierre Seroul (pierre.seroul@gmail.com)
10 Copyright (C) 200COLUMN_IMAGE_NAME
11 Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
12 CREATIS-LRMN http://www.creatis.insa-lyon.fr
14 This program is free software: you can redistribute it and/or modify
15 it under the terms of the GNU General Public License as published by
16 the Free Software Foundation, version 3 of the License.
18 This program is distributed in the hope that it will be useful,
19 but WITHOUT ANY WARRANTY; without even the implied warranty of
20 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
21 GNU General Public License for more details.
23 You should have received a copy of the GNU General Public License
24 along with this program. If not, see <http://www.gnu.org/licenses/>.
26 =========================================================================*/
30 #include <QMessageBox>
31 #include <QInputDialog>
33 #include "QTreePushButton.h"
36 #include "vvMainWindow.h"
37 #include "vvHelpDialog.h"
38 #include "vvDocumentation.h"
39 #include "vvProgressDialog.h"
40 #include "vvQDicomSeriesSelector.h"
41 #include "vvSlicerManager.h"
42 #include "clitkImageCommon.h"
44 #include "vvInteractorStyleNavigator.h"
45 #include "vvImageWriter.h"
46 #include "vvResamplerDialog.h"
47 #include "vvSegmentationDialog.h"
48 #include "vvSurfaceViewerDialog.h"
49 #include "vvDeformationDialog.h"
50 #include "vvImageWarp.h"
52 #include "vvMaximumIntensityProjection.h"
53 #include "vvMidPosition.h"
55 #include "vvStructSelector.h"
56 #include "vvMeshReader.h"
57 #include "vvCropDialog.h"
58 #include "vvConstants.h"
60 #ifdef CLITK_VV_USE_BDCM
61 #include <bdcmDicomFilesSelectorDialog.h>
66 #include "itkImageFileReader.h"
67 #include "itkByteSwapper.h"
68 #include "itkCommand.h"
69 #include "itkNumericSeriesFileNames.h"
72 #include "vtkImageData.h"
73 #include "vtkImageActor.h"
74 #include "vtkCornerAnnotation.h"
75 #include "vtkRenderWindow.h"
76 #include "vtkRenderWindowInteractor.h"
77 #include "vtkRenderer.h"
78 #include "vtkRendererCollection.h"
79 #include "vtkWindowToImageFilter.h"
80 #include "vtkBMPWriter.h"
81 #include "vtkTIFFWriter.h"
82 #include "vtkPNMWriter.h"
83 #include "vtkPNGWriter.h"
84 #include "vtkJPEGWriter.h"
90 #define COLUMN_UL_VIEW 1
91 #define COLUMN_UR_VIEW 2
92 #define COLUMN_DL_VIEW 3
93 #define COLUMN_DR_VIEW 4
94 #define COLUMN_CLOSE_IMAGE 5
95 #define COLUMN_RELOAD_IMAGE 6
96 #define COLUMN_IMAGE_NAME 7
98 #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.hdr *.vox *.his *.xdr)"
101 0,Qt::UserRole full filename
102 1,Qt::CheckStateRole checkbutton UL View
103 1,Qt::UserRole overlay, fusion or vector
104 2,Qt::CheckStateRole checkbutton UR View
105 3,Qt::CheckStateRole checkbutton DL View
106 4,Qt::CheckStateRole checkbutton DR View
108 5,Qt::UserRole mSlicerManager id*/
110 //------------------------------------------------------------------------------
111 vvMainWindow::vvMainWindow():vvMainWindowBase() {
112 setupUi(this); // this sets up the GUI
115 mMenuTools = menuTools;
118 //Init the contextMenu
119 this->setContextMenuPolicy(Qt::CustomContextMenu);
120 contextActions.resize(0);
121 QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/new/prefix1/icons/fileopen.png")),
122 tr("O&pen new Image"));
123 actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
124 connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
125 contextActions.push_back(actionOpen_new_image);
126 contextMenu.addSeparator();
128 QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/new/prefix1/icons/exit.png")),
129 tr("Close Current Image"));
130 connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
131 contextActions.push_back(actionClose_Image);
133 QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/new/prefix1/icons/rotateright.png")),
134 tr("Reload Current Image"));
135 connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
136 contextActions.push_back(actionReload_image);
138 QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/new/prefix1/icons/filesave.png")),
139 tr("Save Current Image"));
140 connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
141 contextActions.push_back(actionSave_image);
143 contextMenu.addSeparator();
145 QAction* actionCrop_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/new/prefix1/icons/crop.png")),
146 tr("Crop Current Image"));
147 connect(actionCrop_image,SIGNAL(triggered()),this,SLOT(CropImage()));
148 contextActions.push_back(actionCrop_image);
150 QAction* actionSplit_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/new/prefix1/icons/cut.png")),
151 tr("Split Current Image"));
152 connect(actionSplit_image,SIGNAL(triggered()),this,SLOT(SplitImage()));
153 contextActions.push_back(actionSplit_image);
155 contextMenu.addSeparator();
157 contextMenu.addAction(actionAdd_VF_to_current_Image);
158 contextActions.push_back(actionAdd_VF_to_current_Image);
160 QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/new/prefix1/icons/GPSup.png")),
161 tr("Add overlay image to current image"));
162 contextMenu.addAction(actionAdd_Overlay_to_current_Image);
163 contextActions.push_back(actionAdd_Overlay_to_current_Image);
165 connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
167 contextMenu.addAction(actionAdd_fusion_image);
168 connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
169 contextActions.push_back(actionAdd_fusion_image);
172 mSlicerManagers.resize(0);
182 header.append("Name");
184 DataTree->setHeaderLabels(header);
185 DataTree->resizeColumnToContents(COLUMN_TREE);
186 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
187 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
188 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
189 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
190 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
191 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
192 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
195 documentation = new vvDocumentation();
196 help_dialog = new vvHelpDialog();
197 dicomSeriesSelector = new vvDicomSeriesSelector();
199 inverseButton->setEnabled(0);
200 actionAdd_Overlay_to_current_Image->setEnabled(0);
201 actionSave_As->setEnabled(0);
202 actionAdd_VF_to_current_Image->setEnabled(0);
203 actionAdd_fusion_image->setEnabled(0);
206 verticalSliders.push_back(NOVerticalSlider);
207 verticalSliders.push_back(NEVerticalSlider);
208 verticalSliders.push_back(SOVerticalSlider);
209 verticalSliders.push_back(SEVerticalSlider);
211 for (int i =0; i < 4; i++)
212 verticalSliders[i]->hide();
214 horizontalSliders.push_back(NOHorizontalSlider);
215 horizontalSliders.push_back(NEHorizontalSlider);
216 horizontalSliders.push_back(SOHorizontalSlider);
217 horizontalSliders.push_back(SEHorizontalSlider);
219 for (int i =0; i < 4; i++)
220 horizontalSliders[i]->hide();
223 connect(NOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOVerticalSliderChanged()));
224 connect(NEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEVerticalSliderChanged()));
225 connect(SOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOVerticalSliderChanged()));
226 connect(SEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEVerticalSliderChanged()));
228 connect(NOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOHorizontalSliderMoved()));
229 connect(NEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEHorizontalSliderMoved()));
230 connect(SOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOHorizontalSliderMoved()));
231 connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved()));
234 connect(actionMaximum_Intensity_Projection,SIGNAL(triggered()),this,SLOT(ComputeMIP()));
235 connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition()));
236 connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration()));
237 connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
238 connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
239 connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
240 connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
241 connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
242 connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
243 connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
244 connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
245 connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
246 connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
247 connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
248 connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
249 connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
251 ///////////////////////////////////////////////
252 contextMenu.addAction(actionResampler);
253 connect(actionResampler,SIGNAL(triggered()),this,SLOT(ResampleCurrentImage()));
254 connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
255 connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
256 ///////////////////////////////////////////////
258 actionNorth_East_Window->setEnabled(0);
259 actionNorth_West_Window->setEnabled(0);
260 actionSouth_East_Window->setEnabled(0);
261 actionSouth_West_Window->setEnabled(0);
263 connect(actionNorth_East_Window,SIGNAL(triggered()),this,SLOT(SaveNEScreenshot()));
264 connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
265 connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
266 connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
268 connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
269 connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
270 SLOT(DisplayChanged(QTreeWidgetItem*, int)));
272 connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
273 connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
274 connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
275 connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
276 connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
277 connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
280 connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
282 connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
283 connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
284 connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int)),this,SLOT(SetVFProperty(int,int,int)));
285 connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int)),this,SLOT(SetOverlayProperty(int)));
286 connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,double,double)),
287 this,SLOT(SetFusionProperty(int,int,double,double)));
288 connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
292 playButton->setEnabled(0);
293 frameRateLabel->setEnabled(0);
294 frameRateSpinBox->setEnabled(0);
295 connect(playButton, SIGNAL(clicked()),this,SLOT(PlayPause()));
296 connect(frameRateSpinBox, SIGNAL(valueChanged(int)),this,SLOT(ChangeFrameRate(int)));
298 goToCursorPushButton->setEnabled(0);
299 connect(goToCursorPushButton, SIGNAL(clicked()),this,SLOT(GoToCursor()));
301 NOViewWidget->hide();
302 NEViewWidget->hide();
303 SOViewWidget->hide();
304 SEViewWidget->hide();
306 //Recently opened files
307 std::list<std::string> recent_files = GetRecentlyOpenedImages();
308 if ( !recent_files.empty() )
310 QMenu * rmenu = new QMenu("Recently opened files...");
311 rmenu->setIcon(QIcon(QString::fromUtf8(":/new/prefix1/icons/open.png")));
312 menuFile->insertMenu(actionOpen_Image_With_Time,rmenu);
313 for (std::list<std::string>::iterator i = recent_files.begin();i!=recent_files.end();i++)
315 QAction* current=new QAction(QIcon(QString::fromUtf8(":/new/prefix1/icons/open.png")),
317 rmenu->addAction(current);
318 connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage()));
322 // Adding all new tools (insertion in the menu)
323 vvToolManager::GetInstance()->InsertToolsInMenu(this);
325 //------------------------------------------------------------------------------
328 //------------------------------------------------------------------------------
329 void vvMainWindow::ComputeMIP()
331 vvMaximumIntensityProjection mip;
332 vvSlicerManager* selected_slicer = mSlicerManagers[GetSlicerIndexFromItem(DataTree->selectedItems()[0])];
333 QFileInfo info(selected_slicer->GetFileName().c_str());
334 mip.Compute(selected_slicer);
335 AddImage(mip.GetOutput(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_mip.mhd");
337 //------------------------------------------------------------------------------
340 //------------------------------------------------------------------------------
341 void vvMainWindow::ComputeMidPosition()
344 int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
345 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
346 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
350 midp.slicer_manager = mSlicerManagers[index];
351 midp.reference_image_index = ref;
352 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
355 QMessageBox::warning(this, "Error computing midposition image",midp.error_message.c_str());
358 QFileInfo info(midp.slicer_manager->GetFileName().c_str());
359 AddImage(midp.output,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_midposition.mhd");
361 QApplication::restoreOverrideCursor();
364 //------------------------------------------------------------------------------
367 //------------------------------------------------------------------------------
368 void vvMainWindow::AddContour(int image_index, vvMesh::Pointer contour, bool propagation)
370 QTreeWidgetItem *item = new QTreeWidgetItem();
371 item->setData(0,Qt::UserRole,"filename.vtk");
372 item->setData(1,Qt::UserRole,tr("contour"));
374 brush.setColor(QColor(contour->r*255,contour->g*255,contour->b*255));
375 brush.setStyle(Qt::SolidPattern);
376 item->setData(COLUMN_IMAGE_NAME,Qt::BackgroundRole,brush);
377 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
379 for (int j = 1; j <= 4; j++)
380 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(image_index)->data(j,Qt::CheckStateRole));
382 QTreePushButton* cButton = new QTreePushButton;
383 cButton->setItem(item);
384 cButton->setColumn(COLUMN_CLOSE_IMAGE);
385 cButton->setToolTip(tr("close image"));
386 cButton->setIcon(QIcon(QString::fromUtf8(":/new/prefix1/icons/exit.png")));
387 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
388 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
390 QTreePushButton* rButton = new QTreePushButton;
391 rButton->setItem(item);
392 rButton->setColumn(COLUMN_RELOAD_IMAGE);
393 rButton->setToolTip(tr("reload image"));
394 rButton->setIcon(QIcon(QString::fromUtf8(":/new/prefix1/icons/rotateright.png")));
395 rButton->setEnabled(false);
397 //connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
398 //this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
400 DataTree->topLevelItem(image_index)->setExpanded(1);
401 DataTree->topLevelItem(image_index)->addChild(item);
402 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
403 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
404 QString id = DataTree->topLevelItem(image_index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
405 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
408 mSlicerManagers[image_index]->AddContour(contour,propagation);
409 mSlicerManagers[image_index]->Render();
411 //------------------------------------------------------------------------------
414 //------------------------------------------------------------------------------
415 void vvMainWindow::OpenVTKContour()
417 if (mSlicerManagers.size() > 0)
419 QString Extensions = "Images ( *.vtk)";
420 Extensions += ";;All Files (*)";
421 QString file = QFileDialog::getOpenFileName(this,tr("Open vtkPolyData"),mInputPathName,Extensions);
424 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
425 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
427 reader.SetModeToVTK();
428 reader.SetFilename(file.toStdString());
430 AddContour(index,reader.GetOutput()[0],false);
431 QApplication::restoreOverrideCursor();
434 //------------------------------------------------------------------------------
437 //------------------------------------------------------------------------------
438 void vvMainWindow::OpenDCStructContour()
440 if (mSlicerManagers.size() > 0)
442 QString Extensions = "Dicom Files ( *.dcm)";
443 Extensions += ";;All Files (*)";
444 QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
447 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
449 reader.SetFilename(file.toStdString());
450 vvStructSelector selector;
451 selector.SetStructures(reader.GetROINames());
452 if (!mSlicerManagers[index]->GetVF().IsNull())
453 selector.EnablePropagationCheckBox();
456 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
457 reader.SetSelectedItems(selector.getSelectedItems());
458 reader.SetImage(mSlicerManagers[index]->GetImage());
459 if (selector.PropagationEnabled())
460 reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
462 std::vector<vvMesh::Pointer> contours=reader.GetOutput();
463 for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
464 i!=contours.end();i++)
465 AddContour(index,*i,selector.PropagationEnabled());
466 QApplication::restoreOverrideCursor();
470 //------------------------------------------------------------------------------
473 //------------------------------------------------------------------------------
474 void vvMainWindow::ComputeDeformableRegistration()
476 if (mSlicerManagers.size() > 0)
478 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
479 vvDeformationDialog dialog(index,mSlicerManagers);
482 std::string base_name=itksys::SystemTools::GetFilenameWithoutExtension(mSlicerManagers[dialog.GetInputFileIndex()]->GetFileName());
483 AddField(dialog.GetOutput(),dialog.getFieldFile(),dialog.GetInputFileIndex());
484 WarpImage(dialog.GetSelectedSlicer(),dialog.GetReferenceFrameIndex());
487 std::cout << "Error or user cancellation while computing deformation field..." << std::endl;
489 else QMessageBox::information(this, "Need to open image","You must open an image first.");
491 //------------------------------------------------------------------------------
494 //------------------------------------------------------------------------------
495 void vvMainWindow::WarpImage()
497 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
498 if (!mSlicerManagers[index]->GetVF().IsNull())
501 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
502 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
505 WarpImage(mSlicerManagers[index],ref);
509 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field"));
511 //------------------------------------------------------------------------------
514 //------------------------------------------------------------------------------
515 void vvMainWindow::WarpImage(vvSlicerManager* selected_slicer,int reference_phase)
517 if (!selected_slicer->GetVF().IsNull())
519 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
520 QFileInfo info(selected_slicer->GetFileName().c_str());
521 vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
522 reference_phase,this);
523 if (warp.ComputeWarpedImage())
525 AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
526 AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
527 AddImage(warp.GetJacobianImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_jacobian.mhd");
528 QApplication::restoreOverrideCursor();
532 QApplication::restoreOverrideCursor();
533 QMessageBox::warning(this,tr("Different spacings"),tr("The vector field and image spacings must be the same in order to warp."));
537 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field."));
539 //------------------------------------------------------------------------------
542 //------------------------------------------------------------------------------
543 vvMainWindow::~vvMainWindow() {
544 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
546 if (mSlicerManagers[i] != NULL)
547 delete mSlicerManagers[i];
550 //------------------------------------------------------------------------------
553 //------------------------------------------------------------------------------
554 void vvMainWindow::MergeImages() {
555 QString Extensions = EXTENSIONS;
556 Extensions += ";;All Files (*)";
557 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images"),mInputPathName,Extensions);
560 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
561 std::vector<std::string> vector;
563 unsigned int currentDim = 0;
564 std::vector<double> currentSpacing;
565 std::vector<int> currentSize;
566 std::vector<double> currentOrigin;
568 for (int i = 0; i < files.size(); i++)
570 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
571 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
572 reader->SetFileName(files[i].toStdString().c_str());
573 reader->ReadImageInformation();
574 if (reader) NOViewWidget->hide();
575 NEViewWidget->hide();
576 SOViewWidget->hide();
577 SEViewWidget->hide();
580 currentDim = reader->GetNumberOfDimensions();
582 for (unsigned int j = 0;j < currentDim; j++)
588 currentSpacing.resize(currentDim);
589 currentSize.resize(currentDim);
590 currentOrigin.resize(currentDim);
592 currentOrigin[j] = reader->GetOrigin(j);
593 currentSpacing[j] = reader->GetSpacing(j);
594 currentSize[j] = reader->GetDimensions(j);
596 else if (currentDim != reader->GetNumberOfDimensions()
597 || currentSpacing[j] != reader->GetSpacing(j)
598 || currentSize[j] != (int)reader->GetDimensions(j)
599 || currentOrigin[j] != reader->GetOrigin(j))
601 QString error = "Cannot read file (too different from others ";
602 error += files[i].toStdString().c_str();
603 QMessageBox::information(this,tr("Reading problem"),error);
609 vector.push_back(files[i].toStdString());
612 if (vector.size() > 0)
613 LoadImages(vector, MERGED);
615 //------------------------------------------------------------------------------
618 //------------------------------------------------------------------------------
619 void vvMainWindow::MergeImagesWithTime() {
620 QString Extensions = EXTENSIONS;
621 Extensions += ";;All Files (*)";
622 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images With Time"),mInputPathName,Extensions);
625 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
626 std::vector<std::string> vector;
628 unsigned int currentDim = 0;
629 std::vector<double> currentSpacing;
630 std::vector<int> currentSize;
631 std::vector<double> currentOrigin;
633 for (int i = 0; i < files.size(); i++)
635 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
636 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
639 reader->SetFileName(files[i].toStdString().c_str());
640 reader->ReadImageInformation();
642 currentDim = reader->GetNumberOfDimensions();
644 for (unsigned int j = 0;j < currentDim; j++)
650 currentSpacing.resize(currentDim);
651 currentSize.resize(currentDim);
652 currentOrigin.resize(currentDim);
654 currentOrigin[j] = reader->GetOrigin(j);
655 currentSpacing[j] = reader->GetSpacing(j);
656 currentSize[j] = reader->GetDimensions(j);
658 else if (currentDim != reader->GetNumberOfDimensions()
659 || currentSpacing[j] != reader->GetSpacing(j)
660 || currentSize[j] != (int)reader->GetDimensions(j)
661 || currentOrigin[j] != reader->GetOrigin(j))
663 QString error = "Cannot read file (too different from others ";
664 error += files[i].toStdString().c_str();
665 QMessageBox::information(this,tr("Reading problem"),error);
671 vector.push_back(files[i].toStdString());
675 QString error = "Cannot read file info for ";
676 error += files[i].toStdString().c_str();
678 error += "Maybe you're trying to open an image in an unsupported format?\n";
679 QMessageBox::information(this,tr("Reading problem"),error);
682 sort(vector.begin(),vector.end());
683 if (vector.size() > 1)
684 LoadImages(vector, MERGEDWITHTIME);
686 QMessageBox::warning(this,tr("Reading problem"),"You need to select at least two images to merge images with time.\nIf you only want to open one image, please use the \"Open Image\" function.");
688 //------------------------------------------------------------------------------
691 //------------------------------------------------------------------------------
692 void vvMainWindow::OpenDicom() {
693 std::vector<std::string> files;
695 #ifdef CLITK_VV_USE_BDCM
696 bool r = bdcm::OpenDicomFilesSelectorDialog(files,
697 "DicomFilesSelectorDialog test",
701 std::cout << "$$$$ main : user clicked 'OK' $$$$"<<std::endl;
702 std::cout << "$$$$ selected files : "<<std::endl;
703 std::vector<std::string>::iterator i;
704 for (i=files.begin();i!=files.end();++i) {
705 std::cout << *i << std::endl;
707 std::cout << "$$$$ "<<std::endl;
709 LoadImages(files,DICOM);
712 std::cout << "$$$$ main : user clicked 'CANCEL' $$$$"<<std::endl;
715 std::cout << "dicomSeriesSelector " << std::endl;
716 if (dicomSeriesSelector->exec() == QDialog::Accepted) {
717 files = *(dicomSeriesSelector->GetFilenames());
718 LoadImages(files,DICOM);
723 //------------------------------------------------------------------------------
725 //------------------------------------------------------------------------------
726 void vvMainWindow::OpenImages() {
727 QString Extensions = EXTENSIONS;
728 Extensions += ";;All Files (*)";
730 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images"),mInputPathName,Extensions);
733 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
734 std::vector<std::string> vector;
735 for (int i = 0; i < files.size(); i++)
736 vector.push_back(files[i].toStdString());
737 LoadImages(vector, IMAGE);
739 //------------------------------------------------------------------------------
740 void vvMainWindow::OpenRecentImage()
742 QAction * caller = qobject_cast<QAction*>(sender());
743 std::vector<std::string> images;
744 images.push_back(caller->text().toStdString());
745 mInputPathName = itksys::SystemTools::GetFilenamePath(images[0]).c_str();
746 LoadImages(images,IMAGE);
749 //------------------------------------------------------------------------------
750 void vvMainWindow::OpenImageWithTime() {
751 QString Extensions = EXTENSIONS;
752 Extensions += ";;All Files (*)";
754 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images With Time"),mInputPathName,Extensions);
757 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
758 std::vector<std::string> vector;
759 for (int i = 0; i < files.size(); i++)
761 vector.push_back(files[i].toStdString());
763 LoadImages(vector, IMAGEWITHTIME);
765 //------------------------------------------------------------------------------
767 //------------------------------------------------------------------------------
768 void vvMainWindow::LoadImages(std::vector<std::string> files, LoadedImageType filetype) {
769 //Separate the way to open images and dicoms
771 if (filetype == IMAGE || filetype == IMAGEWITHTIME)
772 fileSize = files.size();
776 //Only add to the list of recently opened files when a single file is opened,
777 //to avoid polluting the list of recently opened files
778 if (files.size() == 1)
780 QFileInfo finfo=tr(files[0].c_str());
781 AddToRecentlyOpenedImages(finfo.absoluteFilePath().toStdString());
783 //init the progress events
784 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
785 vvProgressDialog progress("Opening " + files[0],fileSize>1);
786 qApp->processEvents();
788 int numberofsuccesulreads=0;
789 //open images as 1 or multiples
790 for (int i = 0; i < fileSize; i++) {
792 progress.Update("Opening " + files[i]);
793 progress.SetProgress(i,fileSize);
794 qApp->processEvents();
796 //read the image and put it in mSlicerManagers
797 vvSlicerManager* imageManager = new vvSlicerManager(4);
798 qApp->processEvents();
800 bool SetImageSucceed=false;
802 if (filetype == IMAGE || filetype == IMAGEWITHTIME)
803 SetImageSucceed = imageManager->SetImage(files[i],filetype);
806 SetImageSucceed = imageManager->SetImages(files,filetype);
808 if (SetImageSucceed == false)
810 QApplication::restoreOverrideCursor();
811 QString error = "Cannot open file \n";
812 error += imageManager->GetLastError().c_str();
813 QMessageBox::information(this,tr("Reading problem"),error);
818 mSlicerManagers.push_back(imageManager);
820 //create an item in the tree with good settings
821 QTreeWidgetItem *item = new QTreeWidgetItem();
822 item->setData(0,Qt::UserRole,files[i].c_str());
823 QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
824 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
825 qApp->processEvents();
827 //Create the buttons for reload and close
828 qApp->processEvents();
829 QTreePushButton* cButton = new QTreePushButton;
830 cButton->setItem(item);
831 cButton->setColumn(COLUMN_CLOSE_IMAGE);
832 cButton->setToolTip(tr("close image"));
833 cButton->setIcon(QIcon(QString::fromUtf8(":/new/prefix1/icons/exit.png")));
834 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
835 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
837 QTreePushButton* rButton = new QTreePushButton;
838 rButton->setItem(item);
839 rButton->setColumn(COLUMN_RELOAD_IMAGE);
840 rButton->setToolTip(tr("reload image"));
841 rButton->setIcon(QIcon(QString::fromUtf8(":/new/prefix1/icons/rotateright.png")));
842 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
843 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
845 DataTree->addTopLevelItem(item);
846 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
847 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
849 //set the id of the image
850 QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
851 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
852 mSlicerManagers.back()->SetId(id.toStdString());
854 linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
856 connect(mSlicerManagers.back(),SIGNAL(currentImageChanged(std::string)),
857 this,SLOT(CurrentImageChanged(std::string)));
858 connect(mSlicerManagers.back(),SIGNAL(
859 UpdatePosition(int, double, double, double, double, double, double, double)),this,
860 SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
861 connect(mSlicerManagers.back(),SIGNAL(UpdateVector(int, double, double, double, double)),
862 this, SLOT(VectorChanged(int,double,double,double, double)));
863 connect(mSlicerManagers.back(),SIGNAL(UpdateOverlay(int, double, double)),
864 this, SLOT(OverlayChanged(int,double,double)));
865 connect(mSlicerManagers.back(),SIGNAL(UpdateFusion(int, double)),
866 this, SLOT(FusionChanged(int,double)));
867 connect(mSlicerManagers.back(),SIGNAL(UpdateWindows(int, int, int)),
868 this,SLOT(WindowsChanged(int, int, int)));
869 connect(mSlicerManagers.back(),SIGNAL(WindowLevelChanged(double, double,int, int)),
870 this,SLOT(WindowLevelChanged(double, double, int, int)));
871 connect(mSlicerManagers.back(),SIGNAL(UpdateSlice(int,int)),
872 this,SLOT(UpdateSlice(int,int)));
873 connect(mSlicerManagers.back(),SIGNAL(UpdateTSlice(int, int)),
874 this,SLOT(UpdateTSlice(int, int)));
875 connect(mSlicerManagers.back(),SIGNAL(UpdateSliceRange(int,int,int,int,int)),
876 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
877 connect(mSlicerManagers.back(),SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
878 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
879 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
881 numberofsuccesulreads++;
884 if (numberofsuccesulreads)
886 NOViewWidget->show();
887 NEViewWidget->show();
888 SOViewWidget->show();
889 SEViewWidget->show();
894 QApplication::restoreOverrideCursor();
897 //------------------------------------------------------------------------------
899 //------------------------------------------------------------------------------
900 void vvMainWindow::UpdateTree() {
901 DataTree->resizeColumnToContents(COLUMN_TREE);
902 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
903 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
904 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
905 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
906 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
907 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
908 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
910 //------------------------------------------------------------------------------
912 //------------------------------------------------------------------------------
913 void vvMainWindow::CurrentImageChanged(std::string id) {
915 for (int i = 0; i < DataTree->topLevelItemCount(); i++)
917 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id)
923 DataTree->topLevelItem(i)->setSelected(0);
925 for (int child = 0; child < DataTree->topLevelItem(i)->childCount();child++)
926 DataTree->topLevelItem(i)->child(child)->setSelected(0);
929 DataTree->topLevelItem(selected)->setSelected(1);
931 //------------------------------------------------------------------------------
933 //------------------------------------------------------------------------------
934 void vvMainWindow::ImageInfoChanged() {
935 contextActions[7]->setEnabled(1);
936 contextActions[6]->setEnabled(1);
937 actionSave_As->setEnabled(1);
938 actionAdd_VF_to_current_Image->setEnabled(1);
939 actionAdd_fusion_image->setEnabled(1);
940 actionNorth_East_Window->setEnabled(1);
941 actionNorth_West_Window->setEnabled(1);
942 actionSouth_East_Window->setEnabled(1);
943 actionSouth_West_Window->setEnabled(1);
944 inverseButton->setEnabled(1);
946 goToCursorPushButton->setEnabled(1);
948 if (DataTree->selectedItems().size()) {
949 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
951 colorMapComboBox->setEnabled(1);
952 for (int i = 0; i < DataTree->topLevelItem(index)->childCount();i++)
954 if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
955 DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion")
957 colorMapComboBox->setEnabled(0);
962 std::vector<double> origin;
963 std::vector<double> inputSpacing;
964 std::vector<int> inputSize;
965 std::vector<double> sizeMM;
968 QString inputSizeInBytes;
969 QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
971 if (mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size() > 1 || playMode == 1)
973 playButton->setEnabled(1);
974 frameRateLabel->setEnabled(1);
975 frameRateSpinBox->setEnabled(1);
979 playButton->setEnabled(0);
980 frameRateLabel->setEnabled(0);
981 frameRateSpinBox->setEnabled(0);
987 if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0])
989 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
990 dimension = imageSelected->GetNumberOfDimensions();
991 origin.resize(dimension);
992 inputSpacing.resize(dimension);
993 inputSize.resize(dimension);
994 sizeMM.resize(dimension);
995 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
996 for (int i = 0;i < dimension;i++)
998 origin[i] = imageSelected->GetOrigin()[i];
999 inputSpacing[i] = imageSelected->GetSpacing()[i];
1000 inputSize[i] = imageSelected->GetSize()[i];
1001 sizeMM[i] = inputSize[i]*inputSpacing[i];
1002 NPixel *= inputSize[i];
1004 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1006 else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector")
1008 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
1009 dimension = imageSelected->GetNumberOfDimensions();
1010 origin.resize(dimension);
1011 inputSpacing.resize(dimension);
1012 inputSize.resize(dimension);
1013 sizeMM.resize(dimension);
1014 pixelType = mSlicerManagers[index]->GetVF()->GetScalarTypeAsString().c_str();
1015 for (int i = 0;i < dimension;i++)
1017 origin[i] = imageSelected->GetOrigin()[i];
1018 inputSpacing[i] = imageSelected->GetSpacing()[i];
1019 inputSize[i] = imageSelected->GetSize()[i];
1020 sizeMM[i] = inputSize[i]*inputSpacing[i];
1021 NPixel *= inputSize[i];
1023 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1025 else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay")
1027 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
1028 dimension = imageSelected->GetNumberOfDimensions();
1029 origin.resize(dimension);
1030 inputSpacing.resize(dimension);
1031 inputSize.resize(dimension);
1032 sizeMM.resize(dimension);
1033 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
1034 for (int i = 0;i < dimension;i++)
1036 origin[i] = imageSelected->GetOrigin()[i];
1037 inputSpacing[i] = imageSelected->GetSpacing()[i];
1038 inputSize[i] = imageSelected->GetSize()[i];
1039 sizeMM[i] = inputSize[i]*inputSpacing[i];
1040 NPixel *= inputSize[i];
1042 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1044 else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion")
1046 vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
1047 dimension = imageSelected->GetNumberOfDimensions();
1048 origin.resize(dimension);
1049 inputSpacing.resize(dimension);
1050 inputSize.resize(dimension);
1051 sizeMM.resize(dimension);
1052 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
1053 for (int i = 0;i < dimension;i++)
1055 origin[i] = imageSelected->GetOrigin()[i];
1056 inputSpacing[i] = imageSelected->GetSpacing()[i];
1057 inputSize[i] = imageSelected->GetSize()[i];
1058 sizeMM[i] = inputSize[i]*inputSpacing[i];
1059 NPixel *= inputSize[i];
1061 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1064 QString dim = QString::number(dimension) + " (";
1065 dim += pixelType + ")";
1067 infoPanel->setFileName(image);
1068 infoPanel->setDimension(dim);
1069 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1070 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1071 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1072 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1073 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1075 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1076 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1077 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1078 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1080 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1081 for (int i = 0; i < 4;i++)
1083 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3)
1085 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1089 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1090 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1091 DD(mSlicerManagers[index]->GetColorMap());
1092 DD(mSlicerManagers[index]->GetPreset());
1093 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1094 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1096 infoPanel->setFileName(image);
1097 infoPanel->setDimension(dim);
1098 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1099 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1100 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1101 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1102 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1104 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1105 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1106 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1107 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1109 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1110 for (int i = 0; i < 4;i++)
1112 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3)
1114 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1118 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1119 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1120 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1121 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1123 if (mSlicerManagers[index]->GetSlicer(0)->GetVF())
1125 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1126 overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
1127 mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
1128 mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
1132 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1133 overlayPanel->getVFProperty(-1,-1,-1);
1135 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay())
1137 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1138 overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor());
1142 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1143 overlayPanel->getOverlayProperty(-1);
1145 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion())
1147 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1148 overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
1149 mSlicerManagers[index]->GetFusionColorMap(),
1150 mSlicerManagers[index]->GetFusionWindow(),
1151 mSlicerManagers[index]->GetFusionLevel());
1155 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1156 overlayPanel->getFusionProperty(-1, -1,-1,-1);
1160 //------------------------------------------------------------------------------
1162 //------------------------------------------------------------------------------
1163 void vvMainWindow::ShowDocumentation() {
1164 documentation->show();
1166 //------------------------------------------------------------------------------
1167 void vvMainWindow::ShowHelpDialog() {
1168 help_dialog->show();
1170 //------------------------------------------------------------------------------
1172 //------------------------------------------------------------------------------
1173 void vvMainWindow::ChangeViewMode() {
1174 QListIterator<int> it0(splitter_3->sizes());
1175 QListIterator<int> it1(splitter_3->sizes());
1178 while (it0.hasNext())
1182 while (it1.hasNext())
1191 size0.push_back(max0);
1193 size1.push_back(max1);
1195 splitter_3->setSizes(size0);
1196 OSplitter->setSizes(size1);
1197 DataTree->setColumnHidden(2,1);
1198 DataTree->setColumnHidden(3,1);
1199 DataTree->setColumnHidden(4,1);
1204 size0.push_back(int(max0/2));
1205 size0.push_back(int(max0/2));
1206 size1.push_back(int(max1/2));
1207 size1.push_back(int(max1/2));
1208 splitter_3->setSizes(size0);
1209 OSplitter->setSizes(size1);
1210 DataTree->setColumnHidden(2,0);
1211 DataTree->setColumnHidden(3,0);
1212 DataTree->setColumnHidden(4,0);
1215 //------------------------------------------------------------------------------
1217 //------------------------------------------------------------------------------
1218 QString vvMainWindow::GetSizeInBytes(unsigned long size) {
1219 QString result = "";// QString::number(size);
1220 //result += " bytes (";
1221 if (size > 1000000000)
1224 result += QString::number(size);
1225 result += "Gb";//)";
1227 else if (size > 1000000)
1230 result += QString::number(size);
1231 result += "Mb";//)";
1233 else if (size > 1000)
1236 result += QString::number(size);
1237 result += "kb";//)";
1241 //------------------------------------------------------------------------------
1243 //------------------------------------------------------------------------------
1244 QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble) {
1246 for (unsigned int i= 0; i < vectorDouble.size(); i++)
1250 result += QString::number(vectorDouble[i]);
1254 //------------------------------------------------------------------------------
1256 //------------------------------------------------------------------------------
1257 QString vvMainWindow::GetVectorIntAsString(std::vector<int> vectorInt) {
1259 for (unsigned int i= 0; i < vectorInt.size(); i++)
1263 result += QString::number(vectorInt[i]);
1267 //------------------------------------------------------------------------------
1269 //------------------------------------------------------------------------------
1270 int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item) {
1271 QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1272 for (int i = 0; i < DataTree->topLevelItemCount(); i++)
1274 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1279 //------------------------------------------------------------------------------
1281 //------------------------------------------------------------------------------
1282 void vvMainWindow::DisplayChanged(QTreeWidgetItem *clicked_item, int column) {
1283 int index = GetSlicerIndexFromItem(clicked_item);
1284 if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
1286 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
1288 QTreeWidgetItem* current_row=DataTree->topLevelItem(i);
1289 if (DataTree->topLevelItem(index) == current_row)
1291 vvSlicer* clicked_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1292 if (current_row == clicked_item)
1294 //If we just activated a slicer
1295 if (current_row->data(column,Qt::CheckStateRole).toInt() > 0)
1297 mSlicerManagers[i]->UpdateSlicer(column-1,clicked_item->data(column,Qt::CheckStateRole).toInt());
1298 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1299 DisplaySliders(i,column-1);
1300 std::map<std::string,int> overlay_counts;
1301 for (int child = 0; child < current_row->childCount(); child++)
1303 std::string overlay_type =
1304 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1305 overlay_counts[overlay_type]++;
1306 current_row->child(child)->setData(column,Qt::CheckStateRole,
1307 current_row->data(column,Qt::CheckStateRole));
1308 clicked_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,true);
1311 else //We don't allow simply desactivating a slicer
1313 clicked_item->setData(column,Qt::CheckStateRole,2);
1317 //if we clicked on the vector(or overlay) and not the image
1320 if (clicked_item->data(column,Qt::CheckStateRole).toInt())
1322 current_row->setData(column,Qt::CheckStateRole,2);
1323 mSlicerManagers[i]->UpdateSlicer(column-1,2);
1324 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1325 DisplaySliders(i,column-1);
1327 int vis = clicked_item->data(column,Qt::CheckStateRole).toInt();
1328 std::string overlay_type = clicked_item->data(1,Qt::UserRole).toString().toStdString();
1329 int overlay_index=0;
1330 for (int child = 0; child < current_row->childCount(); child++)
1332 if (current_row->child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1334 if (current_row->child(child) == clicked_item) break;
1336 clicked_slicer->SetActorVisibility(
1337 clicked_item->data(1,Qt::UserRole).toString().toStdString(), overlay_index-1,vis);
1340 else if (current_row->data(column,Qt::CheckStateRole).toInt() > 0)
1342 current_row->setData(column,Qt::CheckStateRole,0);
1343 mSlicerManagers[i]->UpdateSlicer(column-1,0);
1344 std::map<std::string,int> overlay_counts;
1345 for (int child = 0; child < current_row->childCount(); child++)
1347 std::string overlay_type =
1348 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1349 overlay_counts[overlay_type]++;
1350 current_row->child(child)->setData(column,Qt::CheckStateRole,0);
1351 vvSlicer * current_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1352 current_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,false);
1355 //mSlicerManagers[i]->SetColorMap(-1);
1356 mSlicerManagers[i]->SetColorMap();
1358 mSlicerManagers[index]->GetSlicer(column-1)->Render();
1360 //------------------------------------------------------------------------------
1362 void vvMainWindow::InitSlicers()
1364 if (mSlicerManagers.size())
1366 mSlicerManagers.back()->GenerateDefaultLookupTable();
1368 mSlicerManagers.back()->SetSlicerWindow(0,NOViewWidget->GetRenderWindow());
1369 mSlicerManagers.back()->SetSlicerWindow(1,NEViewWidget->GetRenderWindow());
1370 mSlicerManagers.back()->SetSlicerWindow(2,SOViewWidget->GetRenderWindow());
1371 mSlicerManagers.back()->SetSlicerWindow(3,SEViewWidget->GetRenderWindow());
1375 //------------------------------------------------------------------------------
1376 void vvMainWindow::InitDisplay() {
1377 if (mSlicerManagers.size())
1379 //BE CAREFUL : this is absolutely necessary to set the interactor style
1380 //in order to have the same style instanciation for all SlicerManagers in
1382 for (int j = 0; j < 4; j++)
1384 vvInteractorStyleNavigator* style = vvInteractorStyleNavigator::New();
1385 style->SetAutoAdjustCameraClippingRange(1);
1386 bool AlreadySelected = false;
1387 for (int i = 0; i < DataTree->topLevelItemCount(); i++)
1389 mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
1391 //select the image only if previous are not selected
1392 if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1)
1394 mSlicerManagers[i]->UpdateSlicer(j,1);
1395 AlreadySelected = true;
1397 else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected)
1399 if (DataTree->selectedItems().size() == 0)
1400 DataTree->topLevelItem(i)->setSelected(1);
1401 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
1402 mSlicerManagers[i]->UpdateSlicer(j,1);
1403 DisplaySliders(i,j);
1407 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,0);
1408 mSlicerManagers[i]->UpdateSlicer(j,0);
1415 //------------------------------------------------------------------------------
1417 //------------------------------------------------------------------------------
1418 void vvMainWindow::DisplaySliders(int slicer, int window) {
1420 mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
1421 int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
1425 tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
1426 int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetTSlice();
1427 bool showHorizontal = false;
1428 bool showVertical = false;
1429 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1430 || (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 2
1431 && mSlicerManagers[slicer]->GetType() != IMAGEWITHTIME
1432 && mSlicerManagers[slicer]->GetType() != MERGEDWITHTIME))
1433 showVertical = true;
1434 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1435 || mSlicerManagers[slicer]->GetType() == IMAGEWITHTIME
1436 || mSlicerManagers[slicer]->GetType() == MERGEDWITHTIME)
1437 showHorizontal = true;
1440 verticalSliders[window]->show();
1442 verticalSliders[window]->hide();
1443 verticalSliders[window]->setRange(range[0],range[1]);
1444 verticalSliders[window]->setValue(position);
1447 horizontalSliders[window]->show();
1449 horizontalSliders[window]->hide();
1450 horizontalSliders[window]->setRange(tRange[0],tRange[1]);
1451 horizontalSliders[window]->setValue(tPosition);
1453 //------------------------------------------------------------------------------
1455 //------------------------------------------------------------------------------
1456 void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column) {
1457 int index = GetSlicerIndexFromItem(item);
1459 if (DataTree->topLevelItem(index) != item)
1461 QString warning = "Do you really want to close the overlay : ";
1462 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1463 QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
1465 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1466 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1467 if (msgBox.exec() == QMessageBox::AcceptRole)
1469 std::string overlay_type=item->data(1,Qt::UserRole).toString().toStdString();
1470 int overlay_index=0;
1471 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1473 if (DataTree->topLevelItem(index)->\
1474 child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1476 if (DataTree->topLevelItem(index)->child(child) == item) break;
1478 mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
1479 mSlicerManagers[index]->SetColorMap(0);
1480 DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
1481 mSlicerManagers[index]->Render();
1484 else if (DataTree->topLevelItemCount() <= 1)
1486 QString warning = "Do you really want to close the image : ";
1487 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1488 warning += "\nThis is the last image, you're about to close vv !!!";
1489 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1491 msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
1492 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1493 if (msgBox.exec() == QMessageBox::AcceptRole)
1500 QString warning = "Do you really want to close the image : ";
1501 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1502 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1504 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1505 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1506 if (msgBox.exec() == QMessageBox::AcceptRole)
1509 // Tell tools that we close an image
1510 emit AnImageIsBeingClosed(mSlicerManagers[index]);
1512 std::vector<vvSlicerManager*>::iterator Manageriter = mSlicerManagers.begin();
1513 DataTree->takeTopLevelItem(index);
1514 for (int i = 0; i < index; i++)
1518 linkPanel->removeImage(index);
1519 mSlicerManagers[index]->RemoveActors();
1520 delete mSlicerManagers[index];
1521 mSlicerManagers.erase(Manageriter);
1528 //------------------------------------------------------------------------------
1530 //------------------------------------------------------------------------------
1531 void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column) {
1532 // int index = GetSlicerIndexFromItem(item);
1533 // QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1534 // if (item->data(1,Qt::UserRole).toString() == "vector")
1535 // mSlicerManagers[index]->ReloadVF();
1537 // mSlicerManagers[index]->Reload();
1539 // QApplication::restoreOverrideCursor();
1540 int index = GetSlicerIndexFromItem(item);
1541 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1542 QString role=item->data(1,Qt::UserRole).toString();
1543 if ( role == "vector")
1544 mSlicerManagers[index]->ReloadVF();
1545 else if (role == "overlay")
1546 mSlicerManagers[index]->ReloadOverlay();
1547 else if (role == "fusion")
1548 mSlicerManagers[index]->ReloadFusion();
1550 mSlicerManagers[index]->Reload();
1551 QApplication::restoreOverrideCursor();
1553 //------------------------------------------------------------------------------
1555 void vvMainWindow::CropImage()
1557 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1558 vvCropDialog crop(mSlicerManagers,index);
1560 AddImage(crop.GetOutput(),"cropped.mhd");
1563 //------------------------------------------------------------------------------
1564 void vvMainWindow::SplitImage() {
1565 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1566 int dim = mSlicerManagers[index]->GetDimension();
1567 QString warning = "Do you really want to split the ";
1568 warning += QString::number(dim) + "D image ";
1569 warning += DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString() + " into ";
1570 warning += QString::number(mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetSize()[dim-1]) + " ";
1571 warning += QString::number(dim-1) + "D images.";
1572 QMessageBox msgBox(QMessageBox::Warning, tr("Split Image"),
1574 msgBox.addButton(tr("Split"), QMessageBox::AcceptRole);
1575 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1576 if (msgBox.exec() == QMessageBox::AcceptRole)
1578 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1581 std::string filename = DataTree->selectedItems()[0]->data(0,Qt::UserRole).toString().toStdString();
1582 int numberOfSlice = mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetSize()[dim-1];
1583 std::string path = itksys::SystemTools::GetFilenamePath(
1586 path += DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString().toStdString();
1588 path += itksys::SystemTools::GetFilenameLastExtension(
1591 typedef itk::NumericSeriesFileNames NameGeneratorType;
1592 NameGeneratorType::Pointer nameGenerator = NameGeneratorType::New();
1593 nameGenerator->SetSeriesFormat(path.c_str());
1594 nameGenerator->SetStartIndex(0);
1595 nameGenerator->SetEndIndex(numberOfSlice-1);
1596 nameGenerator->SetIncrementIndex(1);
1598 for (int i = 0; i < numberOfSlice; i++)
1600 vvSlicerManager* imageManager = new vvSlicerManager(4);
1601 imageManager->SetExtractedImage(nameGenerator->GetFileNames()[i],
1602 mSlicerManagers[index]->GetSlicer(0)->GetImage(), i);
1603 mSlicerManagers.push_back(imageManager);
1605 //create an item in the tree with good settings
1606 QTreeWidgetItem *item = new QTreeWidgetItem();
1607 item->setData(0,Qt::UserRole,nameGenerator->GetFileNames()[i].c_str());
1608 std::string fileI = itksys::SystemTools::GetFilenameWithoutLastExtension(
1609 nameGenerator->GetFileNames()[i]).c_str();
1610 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileI.c_str());
1611 for (int j = 1; j <= 4; j++)
1613 for (int i = 0; i < DataTree->topLevelItemCount(); i++)
1615 DataTree->topLevelItem(i)->setData(j,Qt::CheckStateRole,0);
1617 item->setData(j,Qt::CheckStateRole,2);
1620 //Create the buttons for reload and close
1621 QTreePushButton* cButton = new QTreePushButton;
1622 cButton->setItem(item);
1623 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1624 cButton->setToolTip(tr("close image"));
1625 cButton->setIcon(QIcon(QString::fromUtf8(":/new/prefix1/icons/exit.png")));
1626 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1627 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1629 QTreePushButton* rButton = new QTreePushButton;
1630 rButton->setItem(item);
1631 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1632 rButton->setToolTip(tr("reload image"));
1633 rButton->setIcon(QIcon(QString::fromUtf8(":/new/prefix1/icons/rotateright.png")));
1634 rButton->setEnabled(false);
1635 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1636 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1638 DataTree->addTopLevelItem(item);
1639 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1640 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1642 //set the id of the image
1643 QString id = nameGenerator->GetFileNames()[i].c_str() + QString::number(mSlicerManagers.size()-1);
1644 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1645 mSlicerManagers.back()->SetId(id.toStdString());
1646 linkPanel->addImage(fileI, id.toStdString());
1647 connect(mSlicerManagers.back(),SIGNAL(currentImageChanged(std::string)),
1648 this,SLOT(CurrentImageChanged(std::string)));
1649 connect(mSlicerManagers.back(),SIGNAL(
1650 UpdatePosition(int, double, double, double, double, double, double, double)),this,
1651 SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
1652 connect(mSlicerManagers.back(),SIGNAL(UpdateVector(int, double, double, double, double)),
1653 this, SLOT(VectorChanged(int,double,double,double, double)));
1654 connect(mSlicerManagers.back(),SIGNAL(UpdateOverlay(int, double, double)),
1655 this, SLOT(OverlayChanged(int,double,double)));
1656 connect(mSlicerManagers.back(),SIGNAL(UpdateFusion(int, double)),
1657 this, SLOT(FusionChanged(int,double)));
1658 connect(mSlicerManagers.back(),SIGNAL(UpdateWindows(int, int, int)),
1659 this,SLOT(WindowsChanged(int, int, int)));
1660 connect(mSlicerManagers.back(),SIGNAL(WindowLevelChanged(double, double,int, int)),
1661 this,SLOT(WindowLevelChanged(double, double, int, int)));
1662 connect(mSlicerManagers.back(),SIGNAL(UpdateSlice(int,int)),
1663 this,SLOT(UpdateSlice(int,int)));
1664 connect(mSlicerManagers.back(),SIGNAL(UpdateTSlice(int, int)),
1665 this,SLOT(UpdateTSlice(int, int)));
1666 connect(mSlicerManagers.back(),SIGNAL(UpdateSliceRange(int,int,int,int,int)),
1667 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
1668 connect(mSlicerManagers.back(),SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
1669 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
1670 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
1672 qApp->processEvents();
1675 qApp->processEvents();
1677 QApplication::restoreOverrideCursor();
1681 QApplication::restoreOverrideCursor();
1682 QString error = "Cannot split file (dimensions must be greater than 2) ";
1683 QMessageBox::information(this,tr("Splitting problem"),error);
1687 //------------------------------------------------------------------------------
1689 //------------------------------------------------------------------------------
1690 void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value) {
1691 infoPanel->setCurrentInfo(visibility,x,y,z,X,Y,Z,value);
1693 //------------------------------------------------------------------------------
1695 //------------------------------------------------------------------------------
1696 void vvMainWindow::VectorChanged(int visibility,double x, double y, double z, double value) {
1697 overlayPanel->getCurrentVectorInfo(visibility,x,y,z,value);
1699 //------------------------------------------------------------------------------
1701 //------------------------------------------------------------------------------
1702 void vvMainWindow::OverlayChanged(int visibility, double valueOver, double valueRef) {
1703 overlayPanel->getCurrentOverlayInfo(visibility,valueOver, valueRef);
1705 //------------------------------------------------------------------------------
1707 //------------------------------------------------------------------------------
1708 void vvMainWindow::FusionChanged(int visibility, double value) {
1709 overlayPanel->getCurrentFusionInfo(visibility,value);
1711 //------------------------------------------------------------------------------
1713 //------------------------------------------------------------------------------
1714 void vvMainWindow::WindowsChanged(int window, int view, int slice) {
1715 infoPanel->setViews(window, view, slice);
1717 //------------------------------------------------------------------------------
1719 //------------------------------------------------------------------------------
1720 void vvMainWindow::WindowLevelChanged(double window, double level,int preset,int colormap) {
1721 windowSpinBox->setValue(window);
1722 levelSpinBox->setValue(level);
1723 colorMapComboBox->setCurrentIndex(colormap);
1724 presetComboBox->setCurrentIndex(preset);
1726 //------------------------------------------------------------------------------
1728 //------------------------------------------------------------------------------
1729 void vvMainWindow::WindowLevelEdited() {
1730 presetComboBox->setCurrentIndex(6);
1731 UpdateWindowLevel();
1733 //------------------------------------------------------------------------------
1735 //------------------------------------------------------------------------------
1736 void vvMainWindow::UpdateWindowLevel() {
1737 if (DataTree->selectedItems().size())
1739 if (presetComboBox->currentIndex() == 7) //For ventilation
1740 colorMapComboBox->setCurrentIndex(5);
1741 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1742 mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
1743 mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
1744 mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
1745 mSlicerManagers[index]->Render();
1748 //------------------------------------------------------------------------------
1750 //------------------------------------------------------------------------------
1751 void vvMainWindow::UpdateColorMap() {
1752 if (DataTree->selectedItems().size())
1754 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1755 mSlicerManagers[index]->SetColorMap(colorMapComboBox->currentIndex());
1756 mSlicerManagers[index]->Render();
1759 //------------------------------------------------------------------------------
1760 void vvMainWindow::SwitchWindowLevel() {
1761 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1762 int window = mSlicerManagers[index]->GetColorWindow();
1763 presetComboBox->setCurrentIndex(6);
1764 windowSpinBox->setValue(-window);
1765 UpdateWindowLevel();
1767 //------------------------------------------------------------------------------
1769 //------------------------------------------------------------------------------
1770 void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps) {
1771 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
1773 if (mSlicerManagers[i]->GetId() == id)
1775 //mSlicerManagers[i]->SetTSlice(temps);
1776 mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
1777 mSlicerManagers[i]->UpdateViews(0,slicer);
1782 //------------------------------------------------------------------------------
1784 //------------------------------------------------------------------------------
1785 void vvMainWindow::ShowContextMenu(QPoint point) {
1786 if (!DataTree->selectedItems().size())
1788 contextActions[1]->setEnabled(0);
1789 contextActions[2]->setEnabled(0);
1790 contextActions[3]->setEnabled(0);
1791 contextActions[4]->setEnabled(0);
1792 contextActions[5]->setEnabled(0);
1793 contextActions[6]->setEnabled(0);
1794 contextActions[7]->setEnabled(0);
1798 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1799 contextActions[1]->setEnabled(1);
1800 contextActions[2]->setEnabled(
1801 DataTree->itemWidget(DataTree->selectedItems()[0],
1802 COLUMN_RELOAD_IMAGE)->isEnabled());
1803 contextActions[3]->setEnabled(1);
1804 contextActions[5]->setEnabled(1);
1805 contextActions[6]->setEnabled(1);
1806 contextActions[7]->setEnabled(1);
1808 if (mSlicerManagers[index]->GetDimension() < 3)
1809 contextActions[4]->setEnabled(0);
1811 contextActions[4]->setEnabled(1);
1813 contextMenu.exec(QCursor::pos());
1815 //------------------------------------------------------------------------------
1817 //------------------------------------------------------------------------------
1818 void vvMainWindow::CloseImage() {
1819 CloseImage(DataTree->selectedItems()[0],0);
1821 //------------------------------------------------------------------------------
1823 //------------------------------------------------------------------------------
1824 void vvMainWindow::ReloadImage() {
1825 ReloadImage(DataTree->selectedItems()[0],0);
1827 //------------------------------------------------------------------------------
1829 //------------------------------------------------------------------------------
1830 void vvMainWindow::SelectOverlayImage() {
1831 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1833 //check if one overlay image is added
1834 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1835 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay")
1837 QString error = "Cannot add more than one compared image\n";
1838 error += "Please remove first ";
1839 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1840 QMessageBox::information(this,tr("Problem adding compared image !"),error);
1844 QString Extensions = EXTENSIONS;
1845 Extensions += ";;All Files (*)";
1846 QString file = QFileDialog::getOpenFileName(this,tr("Load Overlay image"),mInputPathName,Extensions);
1847 if (!file.isEmpty())
1848 AddOverlayImage(index,file);
1850 //------------------------------------------------------------------------------
1852 //------------------------------------------------------------------------------
1853 void vvMainWindow::AddOverlayImage(int index, QString file) {
1854 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1855 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1856 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1857 reader->SetFileName(file.toStdString().c_str());
1858 reader->ReadImageInformation();
1859 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1860 int dimension = reader->GetNumberOfDimensions();
1861 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1862 vvProgressDialog progress("Opening " + file.toStdString());
1863 qApp->processEvents();
1865 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1866 if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component))
1868 //create an item in the tree with good settings
1869 QTreeWidgetItem *item = new QTreeWidgetItem();
1870 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1871 item->setData(1,Qt::UserRole,tr("overlay"));
1872 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
1873 qApp->processEvents();
1875 for (int j = 1; j <= 4; j++)
1877 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1878 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("overlay",0,
1879 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1882 //Create the buttons for reload and close
1883 qApp->processEvents();
1884 QTreePushButton* cButton = new QTreePushButton;
1885 cButton->setItem(item);
1886 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1887 cButton->setToolTip(tr("close image"));
1888 cButton->setIcon(QIcon(QString::fromUtf8(":/new/prefix1/icons/exit.png")));
1889 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1890 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1892 QTreePushButton* rButton = new QTreePushButton;
1893 rButton->setItem(item);
1894 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1895 rButton->setToolTip(tr("reload image"));
1896 rButton->setIcon(QIcon(QString::fromUtf8(":/new/prefix1/icons/rotateright.png")));
1897 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1898 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1900 DataTree->topLevelItem(index)->setExpanded(1);
1901 DataTree->topLevelItem(index)->addChild(item);
1902 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1903 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1905 //set the id of the image
1906 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1907 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1909 qApp->processEvents();
1911 QApplication::restoreOverrideCursor();
1915 QApplication::restoreOverrideCursor();
1916 QString error = "Cannot import the new image.\n";
1917 error += mSlicerManagers[index]->GetLastError().c_str();
1918 QMessageBox::information(this,tr("Problem reading image !"),error);
1922 void vvMainWindow::AddFusionImage()
1924 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1926 //check if one fusion image is added
1927 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1928 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion")
1930 QString error = "Cannot add more than one fusion image\n";
1931 error += "Please remove first ";
1932 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1933 QMessageBox::information(this,tr("Problem adding fusion image !"),error);
1937 QString Extensions = EXTENSIONS;
1938 Extensions += ";;All Files (*)";
1939 QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
1940 if (!file.isEmpty())
1942 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1943 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1944 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1945 reader->SetFileName(file.toStdString().c_str());
1946 reader->ReadImageInformation();
1947 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1950 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1951 vvProgressDialog progress("Opening fusion");
1952 qApp->processEvents();
1954 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1955 if (mSlicerManagers[index]->SetFusion(file.toStdString(),
1956 reader->GetNumberOfDimensions(), component))
1958 //create an item in the tree with good settings
1959 QTreeWidgetItem *item = new QTreeWidgetItem();
1960 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1961 item->setData(1,Qt::UserRole,tr("fusion"));
1962 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
1963 qApp->processEvents();
1965 for (int j = 1; j <= 4; j++)
1967 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1968 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0,
1969 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1972 //Create the buttons for reload and close
1973 qApp->processEvents();
1974 QTreePushButton* cButton = new QTreePushButton;
1975 cButton->setItem(item);
1976 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1977 cButton->setToolTip(tr("close image"));
1978 cButton->setIcon(QIcon(QString::fromUtf8(":/new/prefix1/icons/exit.png")));
1979 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1980 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1982 QTreePushButton* rButton = new QTreePushButton;
1983 rButton->setItem(item);
1984 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1985 rButton->setToolTip(tr("reload image"));
1986 rButton->setIcon(QIcon(QString::fromUtf8(":/new/prefix1/icons/rotateright.png")));
1987 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1988 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1990 DataTree->topLevelItem(index)->setExpanded(1);
1991 DataTree->topLevelItem(index)->addChild(item);
1992 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1993 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1995 //set the id of the image
1996 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1997 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1999 qApp->processEvents();
2001 QApplication::restoreOverrideCursor();
2005 QApplication::restoreOverrideCursor();
2006 QString error = "Cannot import the new image.\n";
2007 error += mSlicerManagers[index]->GetLastError().c_str();
2008 QMessageBox::information(this,tr("Problem reading image !"),error);
2013 QString error = "Cannot import the new image.\n";
2014 QMessageBox::information(this,tr("Problem reading image !"),error);
2020 void vvMainWindow::OpenField()
2022 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2023 //check if a vector field has already been added
2024 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
2025 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector")
2027 QString error = "Cannot add more than one vector field\n";
2028 error += "Please remove first ";
2029 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
2030 QMessageBox::information(this,tr("Problem adding vector field!"),error);
2034 QString Extensions = "Images ( *.mhd)";
2035 Extensions += ";;Images ( *.vf)";
2036 QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
2037 if (!file.isEmpty())
2038 AddField(file,index);
2041 void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
2043 //create an item in the tree with good settings
2044 QTreeWidgetItem *item = new QTreeWidgetItem();
2045 item->setData(0,Qt::UserRole,filename.toStdString().c_str());
2046 item->setData(1,Qt::UserRole,tr("vector"));
2047 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename);
2048 qApp->processEvents();
2050 for (int j = 1; j <= 4; j++)
2052 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2053 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("vector",0,
2054 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
2057 //Create the buttons for reload and close
2058 qApp->processEvents();
2059 QTreePushButton* cButton = new QTreePushButton;
2060 cButton->setItem(item);
2061 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2062 cButton->setToolTip(tr("close vector field"));
2063 cButton->setIcon(QIcon(QString::fromUtf8(":/new/prefix1/icons/exit.png")));
2064 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2065 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2067 QTreePushButton* rButton = new QTreePushButton;
2068 rButton->setItem(item);
2069 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2070 rButton->setToolTip(tr("reload vector field"));
2071 rButton->setEnabled(from_disk);
2072 rButton->setIcon(QIcon(QString::fromUtf8(":/new/prefix1/icons/rotateright.png")));
2073 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2074 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2076 DataTree->topLevelItem(index)->setExpanded(1);
2077 DataTree->topLevelItem(index)->addChild(item);
2078 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2079 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2081 //set the id of the image
2082 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2083 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2085 qApp->processEvents();
2087 QApplication::restoreOverrideCursor();
2090 void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
2092 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2093 vvSlicerManager* imageManager = mSlicerManagers[index];
2094 if (imageManager->SetVF(vf,file.toStdString()))
2096 AddFieldEntry(file,index,false);
2100 QString error = "Cannot import the vector field for this image.\n";
2101 error += imageManager->GetLastError().c_str();
2102 QMessageBox::information(this,tr("Problem reading VF !"),error);
2104 QApplication::restoreOverrideCursor();
2107 void vvMainWindow::AddField(QString file,int index)
2109 if (QFile::exists(file))
2111 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2113 //init the progress events
2114 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2115 vvProgressDialog progress("Opening " + file.toStdString());
2116 qApp->processEvents();
2118 //read the vector and put it in the current mSlicerManager
2119 vvSlicerManager* imageManager = mSlicerManagers[index];
2120 qApp->processEvents();
2122 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2123 if (imageManager->SetVF(file.toStdString()))
2125 imageManager->Render();
2126 AddFieldEntry(file,index,true);
2130 QApplication::restoreOverrideCursor();
2131 QString error = "Cannot import the vector field for this image.\n";
2132 error += imageManager->GetLastError().c_str();
2133 QMessageBox::information(this,tr("Problem reading VF !"),error);
2137 QMessageBox::information(this,tr("Problem reading VF !"),"File doesn't exist!");
2140 //------------------------------------------------------------------------------
2142 //------------------------------------------------------------------------------
2143 void vvMainWindow::SetVFProperty(int subsampling, int scale, int log) {
2144 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2145 if (mSlicerManagers[index]->GetSlicer(0)->GetVF())
2147 for (int i = 0; i < 4; i++)
2149 mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
2150 mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
2152 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
2154 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(0);
2158 //------------------------------------------------------------------------------
2160 //------------------------------------------------------------------------------
2161 void vvMainWindow::SetOverlayProperty(int color) {
2162 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2163 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay())
2165 mSlicerManagers[index]->SetOverlayColor(color);
2166 mSlicerManagers[index]->SetColorMap(0);
2167 mSlicerManagers[index]->Render();
2170 //------------------------------------------------------------------------------
2172 //------------------------------------------------------------------------------
2173 void vvMainWindow::SetFusionProperty(int opacity, int colormap,double window, double level) {
2174 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2175 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion())
2177 mSlicerManagers[index]->SetFusionOpacity(opacity);
2178 mSlicerManagers[index]->SetFusionColorMap(colormap);
2179 mSlicerManagers[index]->SetFusionWindow(window);
2180 mSlicerManagers[index]->SetFusionLevel(level);
2181 mSlicerManagers[index]->SetColorMap(0);
2182 mSlicerManagers[index]->Render();
2185 //------------------------------------------------------------------------------
2187 //------------------------------------------------------------------------------
2188 void vvMainWindow::SaveAs() {
2189 if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector")
2191 QMessageBox::warning(this,tr("Unsupported type"),tr("Sorry, saving a vector field is unsupported for the moment"));
2195 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2196 int dimension = mSlicerManagers[index]->GetDimension();
2197 QStringList OutputListeFormat;
2198 OutputListeFormat.clear();
2201 OutputListeFormat.push_back(".mhd");
2205 OutputListeFormat.push_back(".bmp");
2206 OutputListeFormat.push_back(".png");
2207 OutputListeFormat.push_back(".jpeg");
2208 OutputListeFormat.push_back(".tif");
2209 OutputListeFormat.push_back(".mhd");
2210 OutputListeFormat.push_back(".hdr");
2211 OutputListeFormat.push_back(".vox");
2213 else if (dimension == 3)
2215 OutputListeFormat.push_back(".mhd");
2216 OutputListeFormat.push_back(".hdr");
2217 OutputListeFormat.push_back(".vox");
2219 else if (dimension == 4)
2221 OutputListeFormat.push_back(".mhd");
2223 QString Extensions = "AllFiles(*.*)";
2224 for (int i = 0; i < OutputListeFormat.count(); i++)
2226 Extensions += ";;Images ( *";
2227 Extensions += OutputListeFormat[i];
2230 QString fileName = QFileDialog::getSaveFileName(this,
2232 mSlicerManagers[index]->GetFileName().c_str(),
2234 if (!fileName.isEmpty())
2236 std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
2237 if (OutputListeFormat.contains(
2238 fileformat.c_str()))
2240 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2241 std::string action = "Saving";
2242 vvProgressDialog progress("Saving "+fileName.toStdString());
2243 qApp->processEvents();
2244 vvImageWriter *writer = new vvImageWriter;
2245 writer->SetOutputFileName(fileName.toStdString());
2246 writer->SetInput(mSlicerManagers[index]->GetImage());
2248 QApplication::restoreOverrideCursor();
2249 if (writer->GetLastError().size())
2251 QString error = "Saving did not succeed\n";
2252 error += writer->GetLastError().c_str();
2253 QMessageBox::information(this,tr("Saving Problem"),error);
2259 QString error = fileformat.c_str();
2260 if (error.isEmpty())
2261 error += "no file format specified !";
2263 error += " format unknown !!!\n";
2264 QMessageBox::information(this,tr("Saving Problem"),error);
2269 //------------------------------------------------------------------------------
2271 //------------------------------------------------------------------------------
2272 void vvMainWindow::AddLink(QString image1,QString image2) {
2273 for (unsigned int i = 0; i < mSlicerManagers.size();i++)
2275 if (image1.toStdString() == mSlicerManagers[i]->GetId())
2277 mSlicerManagers[i]->AddLink(image2.toStdString());
2279 if (image2.toStdString() == mSlicerManagers[i]->GetId())
2281 mSlicerManagers[i]->AddLink(image1.toStdString());
2285 //------------------------------------------------------------------------------
2287 //------------------------------------------------------------------------------
2288 void vvMainWindow::RemoveLink(QString image1,QString image2) {
2289 for (unsigned int i = 0; i < mSlicerManagers.size();i++)
2291 if (image1.toStdString() == mSlicerManagers[i]->GetId())
2293 mSlicerManagers[i]->RemoveLink(image2.toStdString());
2295 if (image2.toStdString() == mSlicerManagers[i]->GetId())
2297 mSlicerManagers[i]->RemoveLink(image1.toStdString());
2301 //------------------------------------------------------------------------------
2303 void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
2305 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
2307 if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1)
2309 for (int j = 0; j < 4; j++)
2311 mSlicerManagers[i]->SetTSliceInSlicer(value,j);
2312 //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
2313 //UpdateTSlice(j,value);
2315 mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
2321 //------------------------------------------------------------------------------
2322 void vvMainWindow::NOHorizontalSliderMoved() {
2323 HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
2325 //------------------------------------------------------------------------------
2327 //------------------------------------------------------------------------------
2328 void vvMainWindow::NEHorizontalSliderMoved() {
2329 HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
2331 //------------------------------------------------------------------------------
2333 //------------------------------------------------------------------------------
2334 void vvMainWindow::SOHorizontalSliderMoved() {
2335 HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
2337 //------------------------------------------------------------------------------
2339 //------------------------------------------------------------------------------
2340 void vvMainWindow::SEHorizontalSliderMoved() {
2341 HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
2343 //------------------------------------------------------------------------------
2345 //------------------------------------------------------------------------------
2346 void vvMainWindow::NOVerticalSliderChanged() {
2347 int value = NOVerticalSlider->value();
2348 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
2350 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
2352 mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
2353 mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ?
2358 //------------------------------------------------------------------------------
2360 //------------------------------------------------------------------------------
2361 void vvMainWindow::NEVerticalSliderChanged() {
2362 int value = NEVerticalSlider->value();
2363 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
2365 if (DataTree->topLevelItem(i)->data(COLUMN_UR_VIEW,Qt::CheckStateRole).toInt() > 1)
2367 mSlicerManagers[i]->GetSlicer(1)->SetSlice(value);
2372 //------------------------------------------------------------------------------
2374 //------------------------------------------------------------------------------
2375 void vvMainWindow::SOVerticalSliderChanged() {
2376 int value = SOVerticalSlider->value();
2377 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
2379 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
2381 mSlicerManagers[i]->GetSlicer(2)->SetSlice(value);
2386 //------------------------------------------------------------------------------
2388 //------------------------------------------------------------------------------
2389 void vvMainWindow::SEVerticalSliderChanged() {
2390 int value = SEVerticalSlider->value();
2391 for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
2393 if (DataTree->topLevelItem(i)->data(COLUMN_DR_VIEW,Qt::CheckStateRole).toInt() > 1)
2395 mSlicerManagers[i]->GetSlicer(3)->SetSlice(value);
2400 //------------------------------------------------------------------------------
2402 //------------------------------------------------------------------------------
2403 void vvMainWindow::UpdateSlice(int slicer, int slice) {
2405 if (slice != NOVerticalSlider->value())
2406 NOVerticalSlider->setValue(slice);
2408 else if (slicer == 1)
2409 NEVerticalSlider->setValue(slice);
2410 else if (slicer == 2)
2411 SOVerticalSlider->setValue(slice);
2412 else if (slicer == 3)
2413 SEVerticalSlider->setValue(slice);
2415 //------------------------------------------------------------------------------
2417 //------------------------------------------------------------------------------
2418 void vvMainWindow::UpdateTSlice(int slicer, int slice) {
2422 NOHorizontalSlider->setValue(slice);
2425 NEHorizontalSlider->setValue(slice);
2428 SOHorizontalSlider->setValue(slice);
2431 SEHorizontalSlider->setValue(slice);
2435 //------------------------------------------------------------------------------
2437 //------------------------------------------------------------------------------
2438 void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax) {
2439 int position = int((min+max)/2);
2440 int tPosition = int((tmin+tmax)/2);
2443 NOVerticalSlider->setValue(position);
2444 NOVerticalSlider->setRange(min,max);
2445 NOHorizontalSlider->setRange(tmin,tmax);
2446 NOHorizontalSlider->setValue(tPosition);
2448 else if (slicer == 1)
2450 NEVerticalSlider->setValue(position);
2451 NEVerticalSlider->setRange(min,max);
2452 NEHorizontalSlider->setRange(tmin,tmax);
2453 NEHorizontalSlider->setValue(tPosition);
2455 else if (slicer == 2)
2457 SOVerticalSlider->setValue(position);
2458 SOVerticalSlider->setRange(min,max);
2459 SOHorizontalSlider->setRange(tmin,tmax);
2460 SOHorizontalSlider->setValue(tPosition);
2462 else if (slicer == 3)
2464 SEVerticalSlider->setValue(position);
2465 SEVerticalSlider->setRange(min,max);
2466 SEHorizontalSlider->setRange(tmin,tmax);
2467 SEHorizontalSlider->setValue(tPosition);
2470 //------------------------------------------------------------------------------
2472 //------------------------------------------------------------------------------
2473 void vvMainWindow::SaveNOScreenshot() {
2474 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2475 w2i->SetInput(NOViewWidget->GetRenderWindow());
2477 SaveScreenshot(w2i->GetOutput());
2480 //------------------------------------------------------------------------------
2482 //------------------------------------------------------------------------------
2483 void vvMainWindow::SaveNEScreenshot() {
2484 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2485 w2i->SetInput(NEViewWidget->GetRenderWindow());
2487 SaveScreenshot(w2i->GetOutput());
2490 //------------------------------------------------------------------------------
2492 //------------------------------------------------------------------------------
2493 void vvMainWindow::SaveSOScreenshot() {
2494 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2495 w2i->SetInput(SOViewWidget->GetRenderWindow());
2497 SaveScreenshot(w2i->GetOutput());
2500 //------------------------------------------------------------------------------
2502 //------------------------------------------------------------------------------
2503 void vvMainWindow::SaveSEScreenshot() {
2504 vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
2505 w2i->SetInput(SEViewWidget->GetRenderWindow());
2507 SaveScreenshot(w2i->GetOutput());
2510 //------------------------------------------------------------------------------
2512 //------------------------------------------------------------------------------
2513 void vvMainWindow::SaveScreenshot(vtkImageData* image) {
2514 QString Extensions = "Images( *.png);;";
2515 Extensions += "Images( *.jpg);;";
2516 Extensions += "Images( *.bmp);;";
2517 Extensions += "Images( *.tif);;";
2518 Extensions += "Images( *.ppm)";
2519 QString fileName = QFileDialog::getSaveFileName(this,
2521 itksys::SystemTools::GetFilenamePath(
2522 mSlicerManagers[0]->GetFileName()).c_str(),
2524 if (!fileName.isEmpty())
2526 const char *ext = fileName.toStdString().c_str() + strlen(fileName.toStdString().c_str()) - 4;
2527 if (!strcmp(ext, ".bmp"))
2529 vtkBMPWriter *bmp = vtkBMPWriter::New();
2530 bmp->SetInput(image);
2531 bmp->SetFileName(fileName.toStdString().c_str());
2535 else if (!strcmp(ext, ".tif"))
2537 vtkTIFFWriter *tif = vtkTIFFWriter::New();
2538 tif->SetInput(image);
2539 tif->SetFileName(fileName.toStdString().c_str());
2543 else if (!strcmp(ext, ".ppm"))
2545 vtkPNMWriter *pnm = vtkPNMWriter::New();
2546 pnm->SetInput(image);
2547 pnm->SetFileName(fileName.toStdString().c_str());
2551 else if (!strcmp(ext, ".png"))
2553 vtkPNGWriter *png = vtkPNGWriter::New();
2554 png->SetInput(image);
2555 png->SetFileName(fileName.toStdString().c_str());
2559 else if (!strcmp(ext, ".jpg"))
2561 vtkJPEGWriter *jpg = vtkJPEGWriter::New();
2562 jpg->SetInput(image);
2563 jpg->SetFileName(fileName.toStdString().c_str());
2569 QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
2574 //------------------------------------------------------------------------------
2576 //------------------------------------------------------------------------------
2577 void vvMainWindow::GoToCursor() {
2578 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2579 for (int column = 1; column < 5; column++)
2581 if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1)
2583 double* cursorPos = mSlicerManagers[index]->GetSlicer(column-1)->GetCursorPosition();
2584 mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
2585 cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
2586 mSlicerManagers[index]->UpdateViews(1,column-1);
2587 mSlicerManagers[index]->UpdateLinked(column-1);
2592 //------------------------------------------------------------------------------
2594 //------------------------------------------------------------------------------
2595 void vvMainWindow::PlayPause() {
2599 playButton->setIcon(QIcon(QString::fromUtf8(":/new/prefix1/icons/player_play.png")));
2605 int image_number=DataTree->topLevelItemCount();
2607 for (int i=0;i<image_number;i++)
2608 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1)
2616 playButton->setIcon(QIcon(QString::fromUtf8(":/new/prefix1/icons/player_pause.png")));
2617 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2621 //------------------------------------------------------------------------------
2623 //------------------------------------------------------------------------------
2624 void vvMainWindow::PlayNext() {
2625 if (playMode && !this->isHidden())
2627 int image_number=DataTree->topLevelItemCount();
2628 ///Only play one slicer per SM, and only if the SM is being displayed
2629 for (int i=0;i<image_number;i++)
2630 for (int j=0;j<4;j++)
2631 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1 &&
2632 DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0)
2634 mSlicerManagers[i]->SetNextTSlice(j);
2637 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2640 //------------------------------------------------------------------------------
2642 void vvMainWindow::ShowLastImage()
2644 if (mSlicerManagers.size() > 1)
2646 QTreeWidgetItem * item=DataTree->topLevelItem(DataTree->topLevelItemCount()-1);
2647 CurrentImageChanged(mSlicerManagers.back()->GetId()); //select new image
2648 item->setData(1,Qt::CheckStateRole,2); //show the new image in the first panel
2649 DisplayChanged(item,1);
2653 //------------------------------------------------------------------------------
2654 void vvMainWindow::UpdateRenderWindows() {
2655 if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
2656 if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
2657 if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
2658 if (SEViewWidget->GetRenderWindow()) SEViewWidget->GetRenderWindow()->Render();
2660 //------------------------------------------------------------------------------
2662 //------------------------------------------------------------------------------
2663 void vvMainWindow::ResampleCurrentImage() {
2664 vvResamplerDialog resampler;
2665 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2666 resampler.SetSlicerManagers(mSlicerManagers,index);
2667 if (resampler.exec())
2668 AddImage(resampler.GetOutput(),resampler.GetOutputFileName());
2670 //------------------------------------------------------------------------------
2672 //------------------------------------------------------------------------------
2673 void vvMainWindow::SegmentationOnCurrentImage() {
2674 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2676 vvSegmentationDialog segmentation;
2677 segmentation.SetImage(mSlicerManagers[index]->GetSlicer(0)->GetImage());
2678 segmentation.exec();
2680 //------------------------------------------------------------------------------
2682 void vvMainWindow::SurfaceViewerLaunch()
2684 vvSurfaceViewerDialog surfaceViewer;
2685 surfaceViewer.exec();
2688 //------------------------------------------------------------------------------
2689 void vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
2691 vvSlicerManager* m = new vvSlicerManager(4);
2693 m->SetFilename(filename);
2697 //------------------------------------------------------------------------------
2698 void vvMainWindow::AddImage(vvSlicerManager * slicer_manager) {
2699 mSlicerManagers.push_back(slicer_manager);
2701 std::string filename = slicer_manager->GetFileName();
2703 //create an item in the tree with good settings
2704 QTreeWidgetItem *item = new QTreeWidgetItem();
2705 item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
2706 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
2707 qApp->processEvents();
2709 for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1);
2711 //Create the buttons for reload and close
2712 qApp->processEvents();
2713 QTreePushButton* cButton = new QTreePushButton;
2714 cButton->setItem(item);
2715 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2716 cButton->setIcon(QIcon(QString::fromUtf8(":/new/prefix1/icons/exit.png")));
2717 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2718 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2720 QTreePushButton* rButton = new QTreePushButton;
2721 rButton->setItem(item);
2722 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2723 rButton->setIcon(QIcon(QString::fromUtf8(":/new/prefix1/icons/rotateright.png")));
2724 rButton->setEnabled(0);
2725 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2726 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2728 DataTree->addTopLevelItem(item);
2729 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2730 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2732 //set the id of the image
2733 QString id = slicer_manager->GetFileName().c_str() + QString::number(mSlicerManagers.size()-1);
2734 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2735 mSlicerManagers.back()->SetId(id.toStdString());
2737 linkPanel->addImage(filename, id.toStdString());
2739 connect(mSlicerManagers.back(),SIGNAL(currentImageChanged(std::string)),
2740 this,SLOT(CurrentImageChanged(std::string)));
2741 connect(mSlicerManagers.back(),SIGNAL(
2742 UpdatePosition(int, double, double, double, double, double, double, double)),this,
2743 SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
2744 connect(mSlicerManagers.back(),SIGNAL(UpdateVector(int, double, double, double, double)),
2745 this, SLOT(VectorChanged(int,double,double,double, double)));
2746 connect(mSlicerManagers.back(),SIGNAL(UpdateOverlay(int, double, double)),
2747 this, SLOT(OverlayChanged(int,double,double)));
2748 connect(mSlicerManagers.back(),SIGNAL(UpdateFusion(int, double)),
2749 this, SLOT(FusionChanged(int,double)));
2750 connect(mSlicerManagers.back(),SIGNAL(UpdateWindows(int, int, int)),
2751 this,SLOT(WindowsChanged(int, int, int)));
2752 connect(mSlicerManagers.back(),SIGNAL(WindowLevelChanged(double, double,int, int)),
2753 this,SLOT(WindowLevelChanged(double, double, int, int)));
2754 connect(mSlicerManagers.back(),SIGNAL(UpdateSlice(int,int)),
2755 this,SLOT(UpdateSlice(int,int)));
2756 connect(mSlicerManagers.back(),SIGNAL(UpdateTSlice(int, int)),
2757 this,SLOT(UpdateTSlice(int, int)));
2758 connect(mSlicerManagers.back(),SIGNAL(UpdateSliceRange(int,int,int,int,int)),
2759 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
2760 connect(mSlicerManagers.back(),SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
2761 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
2762 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
2764 qApp->processEvents();
2768 qApp->processEvents();
2770 //------------------------------------------------------------------------------
2773 //------------------------------------------------------------------------------
2774 void vvMainWindow::UpdateCurrentSlicer() {
2775 DD("UpdateCurrentSlicer");
2777 DD(DataTree->selectedItems().size());
2778 if (DataTree->selectedItems().size() > 0) {
2779 index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2780 DD(DataTree->selectedItems()[0]);
2783 mSlicerManagerCurrentIndex = index;
2785 //------------------------------------------------------------------------------