1 /*=========================================================================
4 Module: $RCSfile: vvToolBinarize.cxx,v $
6 Date: $Date: 2010/03/01 07:37:25 $
7 Version: $Revision: 1.9 $
8 Author : David Sarrut (david.sarrut@creatis.insa-lyon.fr)
11 Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
12 CREATIS-LRMN http://www.creatis.insa-lyon.fr
14 This program is free software: you can redistribute it and/or modify
15 it under the terms of the GNU General Public License as published by
16 the Free Software Foundation, version 3 of the License.
18 This program is distributed in the hope that it will be useful,
19 but WITHOUT ANY WARRANTY; without even the implied warranty of
20 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
21 GNU General Public License for more details.
23 You should have received a copy of the GNU General Public License
24 along with this program. If not, see <http://www.gnu.org/licenses/>.
26 =========================================================================*/
28 #include "vvToolBinarize.h"
29 #include "vvSlicerManager.h"
31 #include "vvToolInputSelectorWidget.h"
33 #include "clitkBinarizeImageGenericFilter.h"
35 #include <vtkImageActor.h>
36 #include <vtkCamera.h>
37 #include <vtkImageClip.h>
39 //------------------------------------------------------------------------------
40 // Create the tool and automagically (I like this word) insert it in
41 // the main window menu.
42 ADD_TOOL(vvToolBinarize);
43 //------------------------------------------------------------------------------
46 //------------------------------------------------------------------------------
47 void vvToolBinarize::Initialize() {
48 SetToolName("Binarize");
49 SetToolMenuName("Binarize");
50 SetToolIconFilename(":/new/prefix1/icons/binarize.png");
51 SetToolTip("Image interactive binarization with thresholds.");
53 //------------------------------------------------------------------------------
56 //------------------------------------------------------------------------------
57 vvToolBinarize::vvToolBinarize(vvMainWindowBase * parent, Qt::WindowFlags f)
58 :vvToolWidgetBase(parent,f),
59 vvToolBase<vvToolBinarize>(parent),
63 Ui_vvToolBinarize::setupUi(mToolWidget);
64 mInteractiveDisplayIsEnabled = mCheckBoxInteractiveDisplay->isChecked();
66 // Connect signals & slots
67 connect(mThresholdSlider1, SIGNAL(valueChanged(double)), this, SLOT(valueChangedT1(double)));
68 connect(mThresholdSlider2, SIGNAL(valueChanged(double)), this, SLOT(valueChangedT2(double)));
69 connect(mRadioButtonLowerThan, SIGNAL(toggled(bool)), this, SLOT(enableLowerThan(bool)));
70 connect(mCheckBoxUseFG, SIGNAL(toggled(bool)), this, SLOT(useFGBGtoggled(bool)));
71 connect(mCheckBoxUseBG, SIGNAL(toggled(bool)), this, SLOT(useFGBGtoggled(bool)));
72 connect(mCheckBoxInteractiveDisplay, SIGNAL(toggled(bool)), this, SLOT(InteractiveDisplayToggled(bool)));
74 // Initialize some widget
75 mThresholdSlider1->SetText("");
76 mThresholdSlider2->SetText("");
77 mFGSlider->SetText("Foreground value");
78 mBGSlider->SetText("Background value");
81 mFilter = new clitk::BinarizeImageGenericFilter<args_info_clitkBinarizeImage>; //DS PUT IN BASECLASS ?
83 //------------------------------------------------------------------------------
86 //------------------------------------------------------------------------------
87 vvToolBinarize::~vvToolBinarize() {
89 //------------------------------------------------------------------------------
92 //------------------------------------------------------------------------------
93 void vvToolBinarize::InteractiveDisplayToggled(bool b) {
94 mInteractiveDisplayIsEnabled = b;
95 if (!mInteractiveDisplayIsEnabled) {
99 for(unsigned int i=0; i<mImageContour.size(); i++)
100 mImageContour[i]->showActors();
101 if (mCurrentSlicerManager)
102 mCurrentSlicerManager->Render();
105 //------------------------------------------------------------------------------
108 //------------------------------------------------------------------------------
109 void vvToolBinarize::RemoveVTKObjects() {
110 for(unsigned int i=0; i<mImageContour.size(); i++)
111 mImageContour[i]->hideActors();
112 if (mCurrentSlicerManager)
113 mCurrentSlicerManager->Render();
115 //------------------------------------------------------------------------------
117 //------------------------------------------------------------------------------
118 bool vvToolBinarize::close() {
120 return vvToolWidgetBase::close();
122 //------------------------------------------------------------------------------
125 //------------------------------------------------------------------------------
126 void vvToolBinarize::reject() {
128 return vvToolWidgetBase::reject();
130 //------------------------------------------------------------------------------
133 //------------------------------------------------------------------------------
134 void vvToolBinarize::enableLowerThan(bool b) {
136 mThresholdSlider1->resetMaximum();
139 valueChangedT1(mThresholdSlider1->GetValue());
142 //------------------------------------------------------------------------------
145 //------------------------------------------------------------------------------
146 void vvToolBinarize::useFGBGtoggled(bool) {
147 if (!mCheckBoxUseBG->isChecked() && !mCheckBoxUseFG->isChecked())
148 mCheckBoxUseBG->toggle();
150 //------------------------------------------------------------------------------
153 //------------------------------------------------------------------------------
154 void vvToolBinarize::InputIsSelected(vvSlicerManager * m) {
155 mCurrentSlicerManager = m;
157 mCurrentImage = mCurrentSlicerManager->GetImage();
159 // Specific for this gui
160 mThresholdSlider1->SetValue(0);
161 mThresholdSlider2->SetValue(0);
162 mThresholdSlider1->SetImage(mCurrentImage);
163 mThresholdSlider2->SetImage(mCurrentImage);
164 mFGSlider->SetImage(mCurrentImage);
165 mBGSlider->SetImage(mCurrentImage);
166 // DD(mCurrentSlicerManager->GetFileName().c_str());
167 mFGSlider->SetMaximum(mCurrentImage->GetFirstVTKImageData()->GetScalarTypeMax());
168 mFGSlider->SetMinimum(mCurrentImage->GetFirstVTKImageData()->GetScalarTypeMin());
169 mBGSlider->SetMaximum(mCurrentImage->GetFirstVTKImageData()->GetScalarTypeMax());
170 mBGSlider->SetMinimum(mCurrentImage->GetFirstVTKImageData()->GetScalarTypeMin());
171 mFGSlider->SetValue(1);
172 mBGSlider->SetValue(0);
174 // VTK objects for interactive display
175 for(int i=0;i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
176 mImageContour.push_back(new vvImageContour);
177 mImageContour[i]->setSlicer(mCurrentSlicerManager->GetSlicer(i));
179 valueChangedT1(mThresholdSlider1->GetValue());
180 connect(mCurrentSlicerManager,SIGNAL(UpdateSlice(int,int)),this,SLOT(UpdateSlice(int, int)));
181 connect(mCurrentSlicerManager,SIGNAL(UpdateTSlice(int,int)),this,SLOT(UpdateSlice(int, int)));
184 //------------------------------------------------------------------------------
187 //------------------------------------------------------------------------------
188 void vvToolBinarize::UpdateSlice(int slicer,int slices) {
189 if (!mInteractiveDisplayIsEnabled) return;
190 if (!mCurrentSlicerManager) close();
191 for(int i=0;i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
192 mImageContour[i]->update(mThresholdSlider1->GetValue());
194 mCurrentSlicerManager->Render();
196 //------------------------------------------------------------------------------
198 //------------------------------------------------------------------------------
199 void vvToolBinarize::GetArgsInfoFromGUI() {
201 /* //KEEP THIS FOR READING GGO FROM FILE
203 std::string a = "toto";
204 char * const* argv = new char*;
206 struct cmdline_parser_params p;
207 p.check_required = 0;
208 int good = cmdline_parser_ext(argc, argv, &args_info, &p);
212 mArgsInfo.upper_given = 0;
213 mArgsInfo.lower_given = 0;
214 bool inverseBGandFG = false;
216 mArgsInfo.lower_given = 1;
217 mArgsInfo.lower_arg = mThresholdSlider1->GetValue();
218 // DD(mArgsInfo.lower_arg);
219 if (mRadioButtonLowerThan->isChecked()) {
220 mArgsInfo.upper_given = 1;
221 mArgsInfo.upper_arg = mThresholdSlider2->GetValue();
222 if (mArgsInfo.upper_arg<mArgsInfo.lower_arg) {
223 mArgsInfo.upper_given = 0;
224 DD("TODO : lower thres greater than greater thres ! Ignoring ");
228 mArgsInfo.fg_arg = mFGSlider->GetValue();
229 mArgsInfo.bg_arg = mBGSlider->GetValue();
231 if (inverseBGandFG) {
232 mArgsInfo.fg_arg = mFGSlider->GetValue();
233 mArgsInfo.bg_arg = mBGSlider->GetValue();
235 mArgsInfo.fg_given = 1;
236 mArgsInfo.bg_given = 1;
238 if (mCheckBoxUseBG->isChecked()) {
239 if (mCheckBoxUseFG->isChecked()) mArgsInfo.mode_arg = (char*)"both";
240 else mArgsInfo.mode_arg = (char*)"BG";
242 else mArgsInfo.mode_arg = (char*)"FG";
244 mArgsInfo.verbose_flag = true;
246 // Required (even if not used)
247 mArgsInfo.input_given = 0;
248 mArgsInfo.output_given = 0;
250 mArgsInfo.input_arg = new char;
251 mArgsInfo.output_arg = new char;
253 //------------------------------------------------------------------------------
256 //------------------------------------------------------------------------------
257 void vvToolBinarize::apply() {
258 if (!mCurrentSlicerManager) close();
259 GetArgsInfoFromGUI();
262 clitk::BinarizeImageGenericFilter<args_info_clitkBinarizeImage>::Pointer filter =
263 clitk::BinarizeImageGenericFilter<args_info_clitkBinarizeImage>::New();
264 filter->SetArgsInfo(mArgsInfo);
265 filter->SetInputVVImage(mCurrentImage);
269 vvImage::Pointer output = filter->GetOutputVVImage();
270 std::ostringstream osstream;
271 osstream << "Binarized_" << mCurrentSlicerManager->GetSlicer(0)->GetFileName() << ".mhd";
272 AddImage(output,osstream.str());
275 //------------------------------------------------------------------------------
278 //------------------------------------------------------------------------------
279 void vvToolBinarize::valueChangedT2(double v) {
280 if (mRadioButtonLowerThan->isChecked()) mThresholdSlider1->SetMaximum(v);
282 //------------------------------------------------------------------------------
285 //------------------------------------------------------------------------------
286 void vvToolBinarize::valueChangedT1(double v) {
288 if (!mCurrentSlicerManager) close();
289 // DD(mCurrentSlicerManager->GetSlicer(0));
290 mThresholdSlider2->SetMinimum(v);
291 int m1 = (int)lrint(v);
293 if (!mInteractiveDisplayIsEnabled) return;
294 for(int i=0;i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
295 mImageContour[i]->update(m1);
297 mCurrentSlicerManager->Render();
299 //------------------------------------------------------------------------------