/* # # File : itkSTMS_XMLFileParser.hxx # ( C++ header file - STMS ) # # Description : STMS lib that implements the STMS filter and clustering. # This file is a part of the STMS Library project. # ( https://www.creatis.insa-lyon.fr/site7/fr/realisations ) # # [1] S. Mure, Grenier, T., Meier, S., Guttmann, R. G., et Benoit-Cattin, H., # « Unsupervised spatio-temporal filtering of image sequences. A mean-shift specification », # Pattern Recognition Letters, vol. 68, Part 1, p. 48 - 55, 2015. # # Copyright : Thomas GRENIER - Simon MURE # ( https://www.creatis.insa-lyon.fr/~grenier/ ) # # License : CeCILL C # ( http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.txt ) # # This software is governed by the CeCILL license under French law and # abiding by the rules of distribution of free software. You can use, # modify and/ or redistribute the software under the terms of the CeCILL # license as circulated by CEA, CNRS and INRIA at the following URL # "http://www.cecill.info". # # As a counterpart to the access to the source code and rights to copy, # modify and redistribute granted by the license, users are provided only # with a limited warranty and the software's author, the holder of the # economic rights, and the successive licensors have only limited # liability. # # In this respect, the user's attention is drawn to the risks associated # with loading, using, modifying and/or developing or reproducing the # software by the user in light of its specific status of free software, # that may mean that it is complicated to manipulate, and that also # therefore means that it is reserved for developers and experienced # professionals having in-depth computer knowledge. Users are therefore # encouraged to load and test the software's suitability as regards their # requirements in conditions enabling the security of their systems and/or # data to be ensured and, more generally, to use and operate it in the # same conditions as regards security. # # The fact that you are presently reading this means that you have had # knowledge of the CeCILL license and that you accept its terms. # */ /* Please don't forget to cite our work : @article {MURE-15a, title = {Unsupervised spatio-temporal filtering of image sequences. A mean-shift specification}, journal = {Pattern Recognition Letters}, volume = {68, Part 1}, year = {2015}, pages = {48 - 55}, issn = {0167-8655}, doi = {http://dx.doi.org/10.1016/j.patrec.2015.07.021}, url = {http://www.sciencedirect.com/science/article/pii/S0167865515002305}, author = {S. Mure and T Grenier and Meier, S. and Guttmann, R.G. and H. Benoit-Cattin} } */ #ifndef itkSTMS_XMLFileParser_HXX #define itkSTMS_XMLFileParser_HXX #include "itkSTMS_XMLFileParser.h" namespace itkSTMS { itkSTMS_XMLFileParser::itkSTMS_XMLFileParser() { xmlParams.experimentPath = ""; xmlParams.imageExtension = ""; xmlParams.outputImageExtension = ""; xmlParams.inputCommonRoot = ""; xmlParams.inputFolder = ""; xmlParams.maskImage = ""; xmlParams.outputFolder = ""; xmlParams.outputCommonRoot = ""; xmlParams.outputCSV = ""; } void itkSTMS_XMLFileParser::Update() { parser = InputType::New(); parser->SetFileName( this->fileName ); parser->Update(); DomObject = parser->GetOutput(); if ( DomObject->GetName() != "STMS_ProcessInfo" ) { std::cout << std::endl << std::endl << "Unrecognized input XML document! STMS_ProcessInfo expected" << std::endl << std::endl; std::exit( EXIT_FAILURE ); } // Read common parameters xmlParams.experimentPath = DomObject->GetAttribute( "experimentPath" ); if ( xmlParams.experimentPath == "" ) { std::cout << std::endl << std::endl << "experimentPath not found" << std::endl << std::endl; std::exit( EXIT_FAILURE ); } xmlParams.imageExtension = DomObject->GetAttribute( "imageExtension" ); if ( xmlParams.imageExtension == "" ) { std::cout << std::endl << std::endl << "imageExtension not found" << std::endl << std::endl; std::exit( EXIT_FAILURE ); } xmlParams.outputImageExtension = DomObject->GetAttribute( "outputImageExtension" ); if ( xmlParams.outputImageExtension == "" ) { std::cout << std::endl << std::endl << "outputImageExtension not set" << std::endl << std::endl; std::exit( EXIT_FAILURE ); } // Read input parameters listInput = DomObject->GetChild( "listInput" ); xmlParams.inputFolder = listInput->GetAttribute( "inputFolder" ); if ( xmlParams.inputFolder == "" ) { std::cout << std::endl << std::endl << "inputFolder not found" << std::endl << std::endl; std::exit( EXIT_FAILURE ); } xmlParams.inputCommonRoot = listInput->GetAttribute( "commonRoot" ); if ( xmlParams.inputCommonRoot == "" ) { std::cout << std::endl << std::endl << "inputCommonRoot not found" << std::endl << std::endl; std::exit( EXIT_FAILURE ); } xmlParams.maskImage = listInput->GetAttribute( "maskImage" ); if ( xmlParams.maskImage == "" ) { std::cout << std::endl << std::endl << "maskImage not found" << std::endl << std::endl; std::exit( EXIT_FAILURE ); } // Read output parameters listOutput = DomObject->GetChild( "listOutput" ); xmlParams.outputFolder = listOutput->GetAttribute( "outputFolder" ); if ( xmlParams.outputFolder == "" ) { std::cout << std::endl << std::endl << "outputFolder not found" << std::endl << std::endl; std::exit( EXIT_FAILURE ); } xmlParams.outputCommonRoot = listOutput->GetAttribute( "commonRoot" ); if ( xmlParams.outputCommonRoot == "" ) { std::cout << std::endl << std::endl << "outputCommonRoot not found" << std::endl << std::endl; std::exit( EXIT_FAILURE ); } xmlParams.outputCSV = listOutput->GetAttribute( "outputCSV" ); if ( xmlParams.outputCSV == "" ) { std::cout << std::endl << std::endl << "outputCSV not set: no CSV file will be created" << std::endl << std::endl; } } } // end of namespace itkSTMS #endif // itkSTMS_XMLFileParser_HXX