# CMakeLists for Testing purpose # Cxx file that need a file to run should be place aproprietly SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH}) SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests) # add test that does not require data: # They usally return if no argument is given SET(TEST_SOURCES TestBug.cxx TestHash.cxx ) # add tests that require data IF (GDCM_DATA_ROOT) SET(TEST_SOURCES ${TEST_SOURCES} TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h PrintAllDocument.cxx # includes generated gdcmDataImages.h TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h TestAllEntryVerify.cxx # includes generated gdcmDataImages.h PrintDicomDir.cxx #TestChangeHeader.cxx TestDicomDir.cxx # require DICOMDIR BuildUpDicomDir.cxx # writes a file named "NewDICOMDIR" makeDicomDir.cxx # writes a file named "NewDICOMDIR" TestCopyDicom.cxx ) # add test that require VTK: IF(GDCM_VTK) INCLUDE_DIRECTORIES( ${GDCM_SOURCE_DIR}/vtk/ ) SET(TEST_SOURCES ${TEST_SOURCES} ShowDicom.cxx ) ENDIF(GDCM_VTK) ENDIF (GDCM_DATA_ROOT) # include stuff INCLUDE_DIRECTORIES( ${GDCM_SOURCE_DIR}/src/ ${GDCM_BINARY_DIR}/ ) CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES}) ADD_EXECUTABLE(gdcmTests ${Tests}) IF(GDCM_VTK) TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering) ELSE(GDCM_VTK) TARGET_LINK_LIBRARIES(gdcmTests gdcm) ENDIF(GDCM_VTK) SET (TestsToRun ${Tests}) REMOVE (TestsToRun gdcmTests.cxx) # Loop over files and create executables FOREACH(file ${TEST_SOURCES}) GET_FILENAME_COMPONENT(name ${file} NAME_WE) # IF (GDCM_DATA_ROOT) # ADD_TEST(${name} ${GDCM_TESTS} ${name} # -D ${GDCM_DATA_ROOT} # -T ${GDCM_BINARY_DIR}/Testing/Temporary # -V Baseline/gdcm/${name}.png) # ELSE (GDCM_DATA_ROOT) ADD_TEST(${name} ${GDCM_TESTS} ${name}) # ENDIF (GDCM_DATA_ROOT) ENDFOREACH(file ${TEST_SOURCES}) #----------------------------------------------------------------------------- # We need to test the reading of all dicom images in the gdcmData directory # First parse this directory and extract all images IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9) FILE(GLOB GDCM_DATA_IMAGES_GLOB "${GDCM_DATA_ROOT}/*.acr" "${GDCM_DATA_ROOT}/*.dcm" "${GDCM_DATA_ROOT}/*.nema" "${GDCM_DATA_ROOT}/*.ima" ) ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9) # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR "${GDCM_DATA_ROOT}/*.acr" ) FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM "${GDCM_DATA_ROOT}/*.dcm" ) FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA "${GDCM_DATA_ROOT}/*.nema" ) FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA "${GDCM_DATA_ROOT}/*.ima" ) SET(GDCM_DATA_IMAGES_GLOB ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR} ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA}) #SET(GDCM_DATA_IMAGES_GLOB ${GDCM_DATA_IMAGES_GLOB_ACR}) ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9) # Black list of images known to break lots of readers (efilm, xmedcon ...): SET(BLACK_LIST # serial killer (also segfaults vtkgdcmViewer, but NOT PrintFile) "gdcm-JPEG-LossLessThoravision.dcm" # Mathieu: temporarily remove as it kills my gnome session (but not kde) # JPR: also breaks TestReadWriteReadCompare : Pixel differ (as expanded # in memory) "KODAK-12-MONO1-Odd_Terminated_Sequence.dcm" #segfaults TestReadWriteReadCompare (same pb as below) --> Fixed #segfaults ShowDicom "gdcm-MR-SIEMENS-16-1.acr" #Break ShowDicom "TestReadWriteReadCompare.dcm" # see comments in gdcmData ref file TestAllEntryVerifyReference.txt # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore #"SIEMENS_GBS_III-16-ACR_NEMA_1.acr" # Frog 2004/07/29: segfaults TestReadWriteReadCompare (pixels not # parsed properly): # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore # "GE_DLX-8-MONO2-Multiframe-Jpeg_Lossless.dcm" # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore #"PICKER-16-MONO2-Nested_icon.dcm" # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore #"SIEMENS_Sonata-16-MONO2-Value_Multiplicity.dcm" # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore # Fails on TestAllReadCompareDicom at the RE-reading stage with message: # Big trouble : Pixel Element (7fe0,10) NOT found # The temporary file GDCMDATAHOME/BaselineDicom/SIEMENS_Sonata-12-MONO2-SQ.dcm # stops after the first binEntry (binary entry) as can be seen with # " gdcmbin/bin/PrintHeader # GDCMDATAHOME/BaselineDicom/SIEMENS_Sonata-12-MONO2-SQ.dcm " # and effectively the pixels are missing (as well as all the entries # after tag 0029|1010) # Note: this file was previously known as E00001S03I0015.dcm #"SIEMENS_Sonata-12-MONO2-SQ.dcm" # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore # As of 14/09 this image creates a crash: # Program received signal SIGSEGV, Segmentation fault. # 0x4032bc4b in gdcmHeader::GetLUTRGBA (this=0x8149228) # at /home/malaterre/Creatis/gdcm/src/gdcmHeader.cxx:1170 # 1170 *a = lutR[i*mult+1]; #"OT-PAL-8-face.dcm" # Files which won't break the test suite but whose png dump looks ugly. # JPR: png looks ugly. so What ? ctest compliant --> un-black listed # "THERALYS-12-MONO2-Uncompressed-E_Film_Template.dcm" # "PHILIPS_Gyroscan-8-MONO2-Odd_Sequence.dcm" # "PHILIPS_Gyroscan-12-MONO2-Jpeg_Lossless.dcm" ) # This is a GLOB expression, change it into a list separated with a comma and \n SET(GDCM_DATA_IMAGES) FOREACH(filename ${GDCM_DATA_IMAGES_GLOB}) GET_FILENAME_COMPONENT(filename_temp ${filename} NAME) STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST}) IF(NOT bad_dicom) SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",") ENDIF(NOT bad_dicom) ENDFOREACH(filename) # Populate GDCM_DATA_IMAGES: FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h" "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n" )