#ifndef CLITKCOMMON_H
#define CLITKCOMMON_H

/**
   -------------------------------------------------------------------
   * @file   clitkCommon.h
   * @author David Sarrut <David.Sarrut@creatis.insa-lyon.fr>
   * @date   17 May 2006 07:57:56

   * @brief  

   -------------------------------------------------------------------*/

// std include
#include <config.h>
#include <cstdlib>
#include <algorithm>
#include <iostream>
#include <fstream>
#include <sstream>
#include <vector>
#include <math.h>
#include <typeinfo>

#include "itkMacro.h"
#include <itkContinuousIndex.h>

//--------------------------------------------------------------------
namespace clitk {
  
#if defined(WIN32)
#define lrint(x) (floor(x+(x>0) ? 0.5 : -0.5))
#endif
  
  typedef unsigned char uchar;
  typedef unsigned short ushort;
  typedef unsigned int uint;

  //--------------------------------------------------------------------
  // display 
#define DD(a) std::cout << #a " = [ " << a << " ]" << std::endl;
#define DDV(a,n) { std::cout << #a " = [ "; for(unsigned int _i_=0; _i_<n; _i_++) { std::cout << a[_i_] << " "; }; std::cout << " ]" << std::endl;}

  //--------------------------------------------------------------------
  // GGO with modified struct name
#define GGO(ggo_filename, args_info)                                             \
  gengetopt_args_info_##ggo_filename args_info;					\
    cmdline_parser2(argc, argv, &args_info, 1, 1, 0);			\
    if (args_info.config_given)						\
      cmdline_parser_configfile (args_info.config_arg, &args_info, 0, 0, 1); \
    else cmdline_parser(argc, argv, &args_info);
  

  /*   //--------------------------------------------------------------------
  // GGO default
#define GGO(ggo_filename, args_info)                                    \
  gengetopt_args_info_##ggo_filename args_info;                         \
  cmdline_parser2(argc, argv, &args_info, 1, 1, 0);			\
  if (args_info.config_given)						\
    cmdline_parser_configfile (args_info.config_arg, &args_info, 0, 0, 1); \
  else cmdline_parser(argc, argv, &args_info);
  
 //--------------------------------------------------------------------
 */
  //--------------------------------------------------------------------
  // skip line with #
  void skipComment(std::istream & is);

  //--------------------------------------------------------------------
  // linear (rough) conversion from Hounsfield Unit to density
  double HU2density(double HU);

  //--------------------------------------------------------------------
  // Return filename extension
  std::string GetExtension(const std::string& filename);
  
  //--------------------------------------------------------------------
  // Convert float, double ... to string
  template<class T> std::string toString(const T & t);
  template<class T> std::string toStringVector(const T * t, const int n);
  template<class T> std::string toStringVector(const T & t, const int n);
  template<class T> std::string toStringVector(const std::vector<T> & t);

  //--------------------------------------------------------------------
  // Display a progress %
  void VerboseInProgress(const int nb, const int current, const int percentage);
  void VerboseInProgressInPercentage(const int nb, const int current, const int percentage);

  //--------------------------------------------------------------------
  // Convert a pixel type to another (downcast)
  template<class TPixelUp, class TPixelDown>
  TPixelDown PixelTypeDownCast(const TPixelUp & x);
  template<>
  float PixelTypeDownCast(const double & x);

  //--------------------------------------------------------------------
  // Return the indexes of sorted values in a vector
  template<class Type> struct vectorComparisonLowerThan;
  template<class Type> struct vectorComparisonGreaterThan;
  template<class Type>
  void GetSortedIndex(const std::vector<Type> & toSort, std::vector<int> & index, bool increasing=true);

  //--------------------------------------------------------------------
  // Return the name of a type as a string
  template<class TPixel>
  std::string GetTypeAsString();
  
  //--------------------------------------------------------------------
  // Convert radian / degree
  double rad2deg(double anglerad);
  double deg2rad(double anglerad);

  //--------------------------------------------------------------------
  int GetTypeSizeFromString(const std::string & type);

  //--------------------------------------------------------------------
  // Special case to handle "signed_char = schar" ...
  template<class T>
  bool IsSameType(std::string t) { return (t==GetTypeAsString<T>()); }
  template<> bool IsSameType<char>(std::string t);
  template<> bool IsSameType<signed char>(std::string t);
  template<> bool IsSameType<unsigned char>(std::string t);
  template<> bool IsSameType<unsigned short>(std::string t);

  //--------------------------------------------------------------------
  template<class T1>
  std::string CreateListOfTypes(bool last=true) {
    return GetTypeAsString<T1>();
  }
  
  template<class T1, class T2>
  std::string CreateListOfTypes(bool last=true) {
    if (last) return CreateListOfTypes<T1>()+" and "+CreateListOfTypes<T2>();
    else return CreateListOfTypes<T1>()+", "+CreateListOfTypes<T2>();
  }
  
  template<class T1, class T2, class T3>
  std::string CreateListOfTypes(bool last=true) {
    if (last) return CreateListOfTypes<T1,T2>(false)+" and "+CreateListOfTypes<T3>();
    else return CreateListOfTypes<T1,T2>(false)+", "+CreateListOfTypes<T3>();
  }

  template<class T1, class T2, class T3, class T4>
  std::string CreateListOfTypes(bool last=true) {
    if (last) return CreateListOfTypes<T1,T2,T3>(false)+" and "+CreateListOfTypes<T4>();
    else return CreateListOfTypes<T1,T2,T3>(false)+", "+CreateListOfTypes<T4>();
  }

  template<class T1, class T2, class T3, class T4, class T5>
  std::string CreateListOfTypes(bool last=true) {
    if (last) return CreateListOfTypes<T1,T2,T3,T4>(false)+" and "+CreateListOfTypes<T5>();
    else return CreateListOfTypes<T1,T2,T3,T4>(false)+", "+CreateListOfTypes<T5>();
  }

  template<class T1, class T2, class T3, class T4, class T5, class T6>
  std::string CreateListOfTypes(bool last=true) {
    if (last) return CreateListOfTypes<T1,T2,T3,T4,T5>(false)+" and "+CreateListOfTypes<T6>();
    else return CreateListOfTypes<T1,T2,T3,T4,T5>(false)+", "+CreateListOfTypes<T6>();
  }

  template<class T1, class T2, class T3, class T4, class T5, class T6, class T7>
  std::string CreateListOfTypes(bool last=true) {
    if (last) return CreateListOfTypes<T1,T2,T3,T4,T5,T6>(false)+" and "+CreateListOfTypes<T7>();
    else return CreateListOfTypes<T1,T2,T3,T4,T5,T6>(false)+", "+CreateListOfTypes<T7>();
  }

  template<class T1, class T2, class T3, class T4, class T5, class T6, class T7, class T8>
  std::string CreateListOfTypes(bool last=true) {
    if (last) return CreateListOfTypes<T1,T2,T3,T4,T5,T6,T7>(false)+" and "+CreateListOfTypes<T8>();
    else return CreateListOfTypes<T1,T2,T3,T4,T5,T6,T7>(false)+", "+CreateListOfTypes<T8>();
  }
  //--------------------------------------------------------------------
  
  //--------------------------------------------------------------------
  void FindAndReplace(std::string & line, const std::string & tofind, const std::string & replacement);
  void FindAndReplace(std::string & line, const std::vector<std::string> & tofind, const std::vector<std::string> & toreplace);
  void FindAndReplace(std::ifstream & in, const std::vector<std::string> & tofind, const std::vector<std::string> & toreplace, std::ofstream & out);
  //--------------------------------------------------------------------

  //--------------------------------------------------------------------
  double ComputeEuclideanDistanceFromPointToPlane(const itk::ContinuousIndex<double, 3> point, 
						  const itk::ContinuousIndex<double, 3> pointInPlane, 
						  const itk::ContinuousIndex<double, 3> normalPlane);

  //--------------------------------------------------------------------
  // Open a File for reading/writing
  void openFileForReading(std::ifstream & is, const std::string & filename);
  void openFileForWriting(std::ofstream & os, const std::string & filename);

  //--------------------------------------------------------------------
  double cotan(double i);
  double invcotan(double i);

  //--------------------------------------------------------------------
  void disableStdCerr();
  void enableStdCerr();
  
#include "clitkCommon.txx"

} // end namespace

#endif /* end #define CLITKCOMMON_H */