%module gdcm %{ #include #include "gdcmCommon.h" #include "gdcmBase.h" #include "gdcmDict.h" #include "gdcmDictEntry.h" #include "gdcmDictSet.h" #include "gdcmDicomDir.h" #include "gdcmDicomDirElement.h" #include "gdcmDicomDirImage.h" #include "gdcmDicomDirMeta.h" #include "gdcmDicomDirObject.h" #include "gdcmDicomDirPatient.h" #include "gdcmDicomDirStudy.h" #include "gdcmDicomDirSerie.h" #include "gdcmDocEntrySet.h" #include "gdcmDocument.h" #include "gdcmElementSet.h" #include "gdcmFileHelper.h" #include "gdcmGlobal.h" #include "gdcmFile.h" #include "gdcmSerieHeader.h" #include "gdcmRLEFramesInfo.h" #include "gdcmJPEGFragmentsInfo.h" #include "gdcmSQItem.h" #include "gdcmUtil.h" #include "gdcmDocEntry.h" #include "gdcmValEntry.h" #include "gdcmBinEntry.h" #include "gdcmSeqEntry.h" //////////////////////////////////////////////////////////////////////////// /// Refer (below) to the definition of multi-argument typemap /// %typemap(python, in) /// ( gdcm::DicomDir::Method*, void*, gdcm::DicomDir::Method*) /// for detail on gdcmPythonVoidFunc() and gdcmPythonVoidFuncArgDelete(). void gdcmPythonVoidFunc(void *arg) { PyObject *arglist, *result; PyObject *func = (PyObject *)arg; arglist = Py_BuildValue("()"); result = PyEval_CallObject(func, arglist); Py_DECREF(arglist); if (result) { Py_XDECREF(result); } else { if (PyErr_ExceptionMatches(PyExc_KeyboardInterrupt)) { std::cerr << "Caught a Ctrl-C within python, exiting program.\n"; Py_Exit(1); } PyErr_Print(); } } void gdcmPythonVoidFuncArgDelete(void *arg) { PyObject *func = (PyObject *)arg; if (func) { Py_DECREF(func); } } /// This is required in order to avoid %including all the gdcm include files. using namespace gdcm; %} /////////////////////// typemap section //////////////////////////////////// //////////////////////////////////////////////// // Redefine all types used typedef char int8_t; typedef unsigned char uint8_t; typedef short int16_t; typedef unsigned short uint16_t; typedef int int32_t; typedef unsigned int uint32_t; typedef long long int64_t; typedef unsigned long long uint64_t; //////////////////////////////////////////////// // Convert a DocEntry * to the real derived class %typemap(out) gdcm::DocEntry * { PyObject *newEntry; if($1) { if(dynamic_cast($1)) // SeqEntry * newEntry = SWIG_NewPointerObj($1,SWIGTYPE_p_gdcm__SeqEntry,0); else if(dynamic_cast($1)) // BinEntry * newEntry = SWIG_NewPointerObj($1,SWIGTYPE_p_gdcm__BinEntry,0); else // ValEntry * newEntry = SWIG_NewPointerObj($1,SWIGTYPE_p_gdcm__ValEntry,0); } else { newEntry = Py_BuildValue(""); } $result = newEntry; } //////////////////////////////////////////////// // Convert an STL list<> to a python native list //%typemap(out) std::list * //{ // PyObject *newItem = (PyObject *)0; // PyObject *newList = PyList_New(0); // The result of this typemap // // for (std::list::iterator strIt = ($1)->begin(); // strIt != ($1)->end(); // ++strIt) // { // newItem = PyString_FromString(strIt->c_str()); // PyList_Append( newList, newItem); // } // $result = newList; //} ////////////////////////////////////////////////////////////////// // Convert an STL map<> (hash table) to a python native dictionary //%typemap(out) std::map > * //{ // PyObject *newDict = PyDict_New(); // The result of this typemap // PyObject *newKey = (PyObject *)0; // PyObject *newVal = (PyObject *)0; // // for (std::map >::iterator tag = ($1)->begin(); // tag != ($1)->end(); ++tag) // { // std::string first = tag->first; // // Do not publish entries whose keys is made of spaces // if (first.length() == 0) // continue; // newKey = PyString_FromString(first.c_str()); // // PyObject *newList = PyList_New(0); // for (std::list::iterator itemIt = tag->second.begin(); // itemIt != tag->second.end(); // ++itemIt) // { // newVal = PyString_FromString(itemIt->c_str()); // PyList_Append( newList, newVal); // } // PyDict_SetItem( newDict, newKey, newList); // } // $result = newDict; //} ///////////////////////////////////////////////////////// // Convert a c++ hash table in a python native dictionary //%typemap(out) gdcm::TagDocEntryHT & //{ // PyObject *newDict = PyDict_New(); // The result of this typemap // std::string rawName; // Element name as gotten from gdcm // PyObject *newKey = (PyObject *)0; // Associated name as python object // std::string rawValue; // Element value as gotten from gdcm // PyObject *newVal = (PyObject *)0; // Associated value as python object // // for (gdcm::TagDocEntryHT::iterator tag = $1->begin(); tag != $1->end(); ++tag) // { // // The element name shall be the key: // rawName = tag->second->GetName(); // // gdcm unrecognized (including not loaded because their size exceeds // // the user specified treshold) elements are exported with their // // TagKey as key. // if (rawName == "Unknown") // rawName = tag->second->GetKey(); // newKey = PyString_FromString(rawName.c_str()); // // // Element values are striped from leading/trailing spaces // gdcm::ValEntry *valEntryPtr = dynamic_cast< gdcm::ValEntry* >(tag->second); // if ( valEntryPtr ) // { // rawValue = valEntryPtr->GetValue(); // } // else // continue; // newVal = PyString_FromString(rawValue.c_str()); // PyDict_SetItem( newDict, newKey, newVal); // } // $result = newDict; //} ///////////////////////////////////// //%typemap(out) ListDicomDirPatient & //{ // PyObject *newItem = (PyObject *)0; // $result = PyList_New(0); // The result of this typemap // // for (std::list::iterator newIt = ($1)->begin(); // newIt != ($1)->end(); ++newIt) // { // newItem = SWIG_NewPointerObj(*newIt,SWIGTYPE_p_DicomDirPatient,0); // PyList_Append($result, newItem); // } //} //%typemap(out) ListDicomDirStudy & //{ // PyObject *newItem = (PyObject *)0; // $result = PyList_New(0); // The result of this typemap // // for (std::list::iterator newIt = ($1)->begin(); // newIt != ($1)->end(); ++newIt) // { // newItem = SWIG_NewPointerObj(*newIt,SWIGTYPE_p_DicomDirStudy,0); // PyList_Append($result, newItem); // } //} //%typemap(out) ListDicomDirSerie & //{ // PyObject* newItem = (PyObject*)0; // $result = PyList_New(0); // The result of this typemap // // for (std::list::iterator newIt = ($1)->begin(); // newIt != ($1)->end(); ++newIt) // { // newItem = SWIG_NewPointerObj(*newIt,SWIGTYPE_p_DicomDirSerie,0); // PyList_Append($result, newItem); // } //} //%typemap(out) ListDicomDirImage & //{ // PyObject* newItem = (PyObject*)0; // $result = PyList_New(0); // The result of this typemap // // for (std::list::iterator newIt = ($1)->begin(); // newIt != ($1)->end(); ++newIt) // { // newItem = SWIG_NewPointerObj(*newIt,SWIGTYPE_p_DicomDirImage,0); // PyList_Append($result, newItem); // } //} //////////////////////////////////////////////////////////////////////////// // Multi-argument typemap designed for wrapping the progress related methods // in order to control from an external application the computation of // a DicomDir object (see DicomDir::SetStartMethod*, // DicomDir::SetProgressMethod* and DicomDir::SetEndMethod*). // Motivation: since DicomDir parsing can be quite long, a GUI application // needs to display the avancement and potentially offer a // cancel method to the user (when this one feels things are // longer than expected). // Example of usage: refer to demo/DicomDirProgressMethod.py // Note: Uses gdcmPythonVoidFunc and gdcmPythonVoidFuncArgDelete defined // in the Swig verbatim section of this gdcm.i i.e. in the above section // enclosed within the %{ ... %} scope operator ). %typemap(python, in) ( gdcm::DicomDir::Method *, void * = NULL, gdcm::DicomDir::Method * = NULL ) { if($input!=Py_None) { Py_INCREF($input); $1=gdcmPythonVoidFunc; $2=$input; $3=gdcmPythonVoidFuncArgDelete; } else { $1=NULL; $2=NULL; $3=NULL; } } //////////////////// STL string versus Python str //////////////////////// // Convertion returning a C++ string. %typemap(out) string, std::string { $result = PyString_FromString(($1).c_str()); } // Convertion of incoming Python str to STL string %typemap(python, in) const std::string, std::string { $1 = PyString_AsString($input); } // Same convertion as above but references (since swig converts C++ // refererences to pointers) %typemap(python, in) std::string const & { $1 = new std::string( PyString_AsString( $input ) ); } //////////////////// gdcm.TagName versus Python str ////////////////////// %typemap(out) gdcm::TagName, const gdcm::TagName & { $result = PyString_FromString(($1)->c_str()); } // Convertion of incoming Python str to STL string %typemap(python, in) const gdcm::TagName, gdcm::TagName { $1 = PyString_AsString($input); } // Same convertion as above but references (since swig converts C++ // refererences to pointers) %typemap(python, in) gdcm::TagName const & { $1 = new std::string( PyString_AsString( $input ) ); } //////////////////////////////////////////////////////////////////////////// // Because overloading and %rename don't work together (see below Note 1) // we need to ignore some methods (e.g. the overloaded default constructor). // The gdcm::File class doesn't have any SetFilename method anyhow, and // this constructor is only used internaly (not from the API) so this is // not a big loss. %ignore gdcm::binary_write(std::ostream &,uint32_t const &); %ignore gdcm::binary_write(std::ostream &,uint16_t const &); %ignore gdcm::File::File(); %ignore gdcm::DicomDir::DicomDir(); // Ignore all placed in gdcmCommon.h %ignore GDCM_UNKNOWN; %ignore GDCM_UNFOUND; %ignore GDCM_BINLOADED; %ignore GDCM_NOTLOADED; %ignore GDCM_UNREAD; //////////////////////////////////////////////////////////////////////////// // Warning: Order matters ! %include "gdcmCommon.h" %include "gdcmBase.h" %include "gdcmDictEntry.h" %include "gdcmDict.h" %include "gdcmDictSet.h" %include "gdcmDocEntrySet.h" %include "gdcmElementSet.h" %include "gdcmSQItem.h" %include "gdcmDicomDirElement.h" %include "gdcmDicomDirObject.h" %include "gdcmDicomDirImage.h" %include "gdcmDicomDirSerie.h" %include "gdcmDicomDirStudy.h" %include "gdcmDicomDirPatient.h" %include "gdcmDicomDirMeta.h" %include "gdcmDocument.h" %include "gdcmFile.h" %include "gdcmSerieHeader.h" %include "gdcmFile.h" %include "gdcmUtil.h" %include "gdcmGlobal.h" %include "gdcmDicomDir.h" %include "gdcmDocEntry.h" %include "gdcmValEntry.h" %include "gdcmBinEntry.h" %include "gdcmSeqEntry.h" //////////////////////////////////////////////////////////////////////////// // Notes on swig and this file gdcm.i: // ///////////////////////////////////// // Note 1: swig collision of method overloading and %typemap // Consider the following junk.i file: // %module junk // %{ // #include // #include // void Junk(std::string const & bozo) { std::cout << bozo << std::endl; } // void Junk() { std::cout << "Renamed Junk()" << std::endl; } // %} // // %typemap(python, in) std::string const & // { // $1 = new std::string( PyString_AsString( $input ) ); // } // void Junk(); // void Junk(std::string const & bozo); // // that we compile on linux with: // swig -c++ -python junk.i // g++ -g -I/usr/include/python2.3/ -o junk_wrap.o -c junk_wrap.cxx // g++ junk_wrap.o -shared -g -o _junk.so -L/usr/lib/python2.3/config \ // -lpython2.3 // and invoque with: // python -c 'from junk import *; Junk("aaa") ' // then we get the following unexpected (for novice) python TypeError: // TypeError: No matching function for overloaded 'Junk' // // This happens because the swig generated code (at least for python) does // the following two stage process: // 1/ first do a dynamic dispatch ON THE NUMBER OF ARGUMENTS of the overloaded // Junk function (the same happens with method of course). [Note that the // dispatch is NOT done on the type of the arguments]. // 2/ second apply the typemap. // When the first dynamic dispatch is executed, the swig generated code // has no knowledge of the typemap, and thus expects a pointer to a std::string // type i.e. an argument to Junk of the form _p_std__int
. But this // is not what python handles to Junk ! An invocation of the form 'Junk("aaa")' // will make Python pass a PyString to swig (and this is precisely why we // wrote the typemap). And this will fail.... /////////////////////////////////////