#File clitkExtractLymphStations.ggo
package "clitkExtractLymphStations"
version "1.0"
purpose "Extract LymphStations with help of TODO"

option "config" - "Config file" string no
option "imagetypes" - "Display allowed image types" flag off
option "verbose" v "Verbose" flag off
option "verboseStep" - "Verbose each step" flag off
option "writeStep" w "Write image at each step" flag off
option "verboseOption" - "Display options values" flag off
option "verboseWarningOff" - "Do not display warning" flag off
option "verboseMemory" - "Display memory usage" flag off

section "I/O"

option "afdb" a "Input Anatomical Feature DB" string no
option "input" i "Input filename" string no
option "output" o "Output lungs mask filename" string no

section "Options for all stations"
option "station" - "Force to compute station even if already exist in the DB" string no multiple
option "nosupport" - "Do not recompute the station supports if already available" flag off
option "relpos" - "List of filenames for relativeposition operations" string no multiple

section "Options for Station 3A"

section "Options for Station 2RL"

section "Options for Station 1RL"


section "Options for Station 8"
option "S8_esophagusDilatationForAnt" - "Dilatation of esophagus, in mm, for 'anterior' limits (default=15,2,1)" double no multiple
option "S8_esophagusDilatationForRight" - "Dilatation of esophagus, in mm, for 'right' limits (default=5,10,1)" double no multiple
option "S8_ft_Esophagus" - "Fuzzy Threshold for 'Post' to dilated Esophagus" double default="0.5" no 

section "Options for Station 7"
option "S7_ft_Bronchi" - "Fuzzy Threshold for Left/Right bronchi" double default="0.1" no 
option "S7_ft_LeftSuperiorPulmonaryVein" - "Fuzzy Threshold for LeftSuperiorPulmonaryVein" double default="0.3" no 
option "S7_ft_RightSuperiorPulmonaryVein" - "Fuzzy Threshold for RightSuperiorPulmonaryVein" double default="0.2" no 
option "S7_ft_RightPulmonaryArtery" - "Fuzzy Threshold for RightPulmonaryArtery" double default="0.3" no 
option "S7_ft_LeftPulmonaryArtery" - "Fuzzy Threshold for LeftPulmonaryArtery (NOT USEFUL YET)" double default="0.5" no 
option "S7_ft_SVC" - "Fuzzy Threshold for SVC" double default="0.2" no 
option "S7_UseMostInferiorPartOnly" - "Inferior separation with S8." flag off