// gdcmDicomDir.cxx //----------------------------------------------------------------------------- #include #include #include #include #ifdef _MSC_VER #include #else #include #endif #include "gdcmDicomDir.h" #include "gdcmDicomDirStudy.h" #include "gdcmDicomDirSerie.h" #include "gdcmDicomDirImage.h" #include "gdcmDirList.h" #include "gdcmUtil.h" #include "gdcmDebug.h" #include "gdcmGlobal.h" //----------------------------------------------------------------------------- // For full DICOMDIR description, see: // PS 3.3-2003, pages 731-750 //----------------------------------------------------------------------------- // Constructor / Destructor /** * \brief Constructor Parses recursively the directory and creates the DicomDir * or uses an already built DICOMDIR, depending on 'parseDir' value. * @param FileName name * - of the root directory (parseDir = true) * - of the DICOMDIR (parseDir = false) * @param parseDir boolean * - true if user passed an entry point * and wants to explore recursively the directories * - false if user passed an already built DICOMDIR file * and wants to use it * @param exception_on_error whether we want to throw an exception or not */ gdcmDicomDir::gdcmDicomDir(const char *FileName, bool parseDir, bool exception_on_error): gdcmParser(FileName,exception_on_error,true) // true : enable SeQuences { // que l'on ai passe un root directory ou un DICOMDIR // et quelle que soit la valeur de parseDir, // on a lance gdcmParser startMethod= NULL; progressMethod= NULL; endMethod= NULL; startMethodArgDelete= NULL; progressMethodArgDelete=NULL; endMethodArgDelete= NULL; startArg= NULL; progressArg= NULL; endArg= NULL; progress=0.0; abort=false; metaElems=NULL; // gdcmParser already executed // if user passed a root directory, sure we didn't get anything if( GetListEntry().begin()==GetListEntry().end() ) { // if parseDir == false, it should be tagged as an error dbg.Verbose(0, "gdcmDicomDir::gdcmDicomDir : entry list empty"); if(strlen(FileName)==1 && FileName[0]=='.') { // user passed '.' as Name // we get current directory name char*dummy=(char*) malloc(1000); getcwd(dummy,(size_t)1000); SetFileName(dummy); // will be converted into a string free(dummy); // no longer needed } if(parseDir) { dbg.Verbose(0, "gdcmDicomDir::gdcmDicomDir : Parse directory" " and create the DicomDir"); ParseDirectory(); } } else { CreateDicomDir(); CheckBoundaries(); // to maintain consistency between // home-made gdcmDicomDir // and the ones comming from a DICOMDIR file } } /** * \ingroup gdcmDicomDir * \brief Constructor : creates an empty gdcmDicomDir * @param exception_on_error whether we want to throw an exception or not */ gdcmDicomDir::gdcmDicomDir(bool exception_on_error): gdcmParser(exception_on_error) { startMethod= NULL; progressMethod= NULL; endMethod= NULL; startMethodArgDelete= NULL; progressMethodArgDelete=NULL; endMethodArgDelete= NULL; startArg= NULL; progressArg= NULL; endArg= NULL; progress=0.0; abort=false; std::string pathBidon = ""; // Sorry, NULL not allowed ... SetElement(pathBidon, GDCM_DICOMDIR_META, NULL); // Set the META elements AddDicomDirMetaToEnd(listEntries.begin(),--listEntries.end()); } /** * \ingroup gdcmDicomDir * \brief Canonical destructor */ gdcmDicomDir::~gdcmDicomDir() { SetStartMethod(NULL); SetProgressMethod(NULL); SetEndMethod(NULL); if(metaElems) delete metaElems; for(ListDicomDirPatient::iterator cc=patients.begin();cc!=patients.end();++cc) { delete *cc; } } //----------------------------------------------------------------------------- // Print /** * \ingroup gdcmDicomDir * \brief Canonical Printer */ void gdcmDicomDir::Print(std::ostream &os) { if(metaElems) { metaElems->SetPrintLevel(printLevel); metaElems->Print(os); } for(ListDicomDirPatient::iterator cc=patients.begin();cc!=patients.end();++cc) { (*cc)->SetPrintLevel(printLevel); (*cc)->Print(os); } } //----------------------------------------------------------------------------- // Public /** * \ingroup gdcmDicomDir * \brief This predicate, based on hopefully reasonable heuristics, * decides whether or not the current header was properly parsed * and contains the mandatory information for being considered as * a well formed and usable DicomDir. * @return true when gdcmParser is the one of a reasonable DicomDir, * false otherwise. */ bool gdcmDicomDir::IsReadable(void) { if(!gdcmParser::IsReadable()) return(false); if(!metaElems) return(false); if(patients.size()<=0) return(false); return(true); } /** * \ingroup gdcmDicomDir * \brief fills the whole structure, starting from a root Directory */ void gdcmDicomDir::ParseDirectory(void) { CreateDicomDirChainedList(GetFileName()); CreateDicomDir(); } /** * \ingroup gdcmDicomDir * \brief Set the start method to call when the parsing of the directory starts * @param method Method to call * @param arg Argument to pass to the method * @param argDelete Argument * \warning In python : the arg parameter isn't considered */ void gdcmDicomDir::SetStartMethod(gdcmMethod *method,void *arg,gdcmMethod *argDelete) { if((startArg)&&(startMethodArgDelete)) startMethodArgDelete(startArg); startMethod=method; startArg=arg; startMethodArgDelete=argDelete; } /** * \ingroup gdcmDicomDir * \brief Set the method to delete the argument * The argument is destroyed when the method is changed or when the * class is destroyed * @param method Method to call to delete the argument */ void gdcmDicomDir::SetStartMethodArgDelete(gdcmMethod *method) { startMethodArgDelete=method; } /** * \ingroup gdcmDicomDir * \brief Set the progress method to call when the parsing of the directory progress * @param method Method to call * @param arg Argument to pass to the method * @param argDelete Argument * \warning In python : the arg parameter isn't considered */ void gdcmDicomDir::SetProgressMethod(gdcmMethod *method,void *arg,gdcmMethod *argDelete) { if((progressArg)&&(progressMethodArgDelete)) progressMethodArgDelete(progressArg); progressMethod=method; progressArg=arg; progressMethodArgDelete=argDelete; } /** * \ingroup gdcmDicomDir * \brief Set the method to delete the argument * The argument is destroyed when the method is changed or when the * class is destroyed * @param method Method to call to delete the argument */ void gdcmDicomDir::SetProgressMethodArgDelete(gdcmMethod *method) { progressMethodArgDelete=method; } /** * \ingroup gdcmDicomDir * \brief Set the end method to call when the parsing of the directory ends * @param method Method to call * @param arg Argument to pass to the method * @param argDelete Argument * \warning In python : the arg parameter isn't considered */ void gdcmDicomDir::SetEndMethod(gdcmMethod *method, void *arg, gdcmMethod *argDelete) { if((endArg)&&(endMethodArgDelete)) endMethodArgDelete(endArg); endMethod=method; endArg=arg; endMethodArgDelete=argDelete; } /** * \ingroup gdcmDicomDir * \brief Set the method to delete the argument * The argument is destroyed when the method is changed or when the class * is destroyed * @param method Method to call to delete the argument */ void gdcmDicomDir::SetEndMethodArgDelete(gdcmMethod *method) { endMethodArgDelete=method; } /** * \ingroup gdcmDicomDir * \brief writes on disc a DICOMDIR * \ warning does NOT add the missing elements in the header : * it's up to the user doing it ! * \todo : to be re-written using the DICOMDIR tree-like structure * *not* the chained list * (does NOT exist if the DICOMDIR is user-forged !) * @param fileName file to be written to * @return false only when fail to open */ bool gdcmDicomDir::Write(std::string fileName) { FILE * fp1; fp1=fopen(fileName.c_str(),"wb"); if(fp1==NULL) { printf("Failed to open(write) File [%s] \n",fileName.c_str()); return(false); } char * filePreamble; filePreamble=(char*)calloc(128,1); fwrite(filePreamble,128,1,fp1); fwrite("DICM",4,1,fp1); free(filePreamble); UpdateDirectoryRecordSequenceLength(); WriteEntries(fp1); fclose(fp1); return true; } /** * \brief Writes in a file using the tree-like structure. * @param _fp already open file pointer */ void gdcmDicomDir::WriteEntries(FILE *_fp) { // TODO (?) tester les echecs en ecriture // (apres chaque fwrite, dans le WriteEntry) gdcmDicomDirMeta *ptrMeta; ListDicomDirPatient::iterator itPatient; ListDicomDirStudy::iterator itStudy; ListDicomDirSerie::iterator itSerie; ListDicomDirImage::iterator itImage; ListTag::iterator i; ptrMeta= GetDicomDirMeta(); for(i=ptrMeta->debut();i!=ptrMeta->fin();++i) { WriteEntry(*i,_fp, ExplicitVR); } itPatient = GetDicomDirPatients().begin(); while ( itPatient != GetDicomDirPatients().end() ) { for(i=(*itPatient)->debut();i!=(*itPatient)->fin();++i) { WriteEntry(*i,_fp, ExplicitVR); } itStudy = ((*itPatient)->GetDicomDirStudies()).begin(); while (itStudy != (*itPatient)->GetDicomDirStudies().end() ) { for(i=(*itStudy)->debut();i!=(*itStudy)->fin();++i) { WriteEntry(*i,_fp, ExplicitVR); } itSerie = ((*itStudy)->GetDicomDirSeries()).begin(); while (itSerie != (*itStudy)->GetDicomDirSeries().end() ) { for(i=(*itSerie)->debut();i!=(*itSerie)->fin();++i) { WriteEntry(*i,_fp, ExplicitVR); } itImage = ((*itSerie)->GetDicomDirImages()).begin(); while (itImage != (*itSerie)->GetDicomDirImages().end() ) { for(i=(*itImage)->debut();i!=(*itImage)->fin();++i) { WriteEntry(*i,_fp, ExplicitVR); } ++itImage; } ++itSerie; } ++itStudy; } ++itPatient; } } //----------------------------------------------------------------------------- // Protected /** * \ingroup gdcmDicomDir * \brief create a gdcmHeader-like chained list from a root Directory * @param path entry point of the tree-like structure */ void gdcmDicomDir::CreateDicomDirChainedList(std::string path) { CallStartMethod(); gdcmDirList fileList(path,1); // gets recursively the file list unsigned int count=0; ListHeader list; gdcmHeader *header; listEntries.clear(); patients.clear(); for(gdcmDirList::iterator it=fileList.begin(); it!=fileList.end(); ++it) { progress=(float)(count+1)/(float)fileList.size(); CallProgressMethod(); if(abort) break; header=new gdcmHeader(it->c_str()); if(header->IsReadable()) list.push_back(header); // adds the file header to the chained list else delete header; count++; } // sorts Patient/Study/Serie/ std::sort(list.begin(),list.end(),gdcmDicomDir::HeaderLessThan); std::string tmp=fileList.GetDirName(); //for each Header of the chained list, add/update the Patient/Study/Serie/Image info SetElements(tmp,list); CallEndMethod(); } /** * \ingroup gdcmDicomDir * \brief modifies the limits of a gdcmObject, created from a DICOMDIR file */ void gdcmDicomDir::CheckBoundaries() { ListDicomDirPatient::iterator itPatient; ListDicomDirStudy::iterator itStudy; ListDicomDirSerie::iterator itSerie; ListDicomDirImage::iterator itImage; ListTag::iterator i,j; GetDicomDirMeta()->ResetBoundaries(0); itPatient = GetDicomDirPatients().begin(); while ( itPatient != GetDicomDirPatients().end() ) { (*itPatient)->ResetBoundaries(1); itStudy = ((*itPatient)->GetDicomDirStudies()).begin(); while (itStudy != (*itPatient)->GetDicomDirStudies().end() ) { (*itStudy)->ResetBoundaries(1); itSerie = ((*itStudy)->GetDicomDirSeries()).begin(); while (itSerie != (*itStudy)->GetDicomDirSeries().end() ) { (*itSerie)->ResetBoundaries(1); itImage = ((*itSerie)->GetDicomDirImages()).begin(); while (itImage != (*itSerie)->GetDicomDirImages().end() ) { (*itImage)->ResetBoundaries(1); ++itImage; } ++itSerie; } ++itStudy; } ++itPatient; } } /** * \ingroup gdcmDicomDir * \brief adds a new Patient to a partially created DICOMDIR */ gdcmDicomDirPatient * gdcmDicomDir::NewPatient(void) { std::list elemList; std::list::iterator it; guint16 tmpGr,tmpEl; gdcmDictEntry *dictEntry; gdcmHeaderEntry *entry; elemList=gdcmGlobal::GetDicomDirElements()->GetDicomDirPatientElements(); std::list::iterator debInsertion, finInsertion, i,j; debInsertion = metaElems->fin(); ++debInsertion; finInsertion=debInsertion; // for all the DicomDirPatient Elements for(it=elemList.begin();it!=elemList.end();++it) { tmpGr=it->group; tmpEl=it->elem; dictEntry=GetPubDict()->GetDictEntryByNumber(tmpGr,tmpEl); entry=new gdcmHeaderEntry(dictEntry); entry->SetOffset(0); // just to avoid missprinting entry->SetValue(it->value); if(dictEntry->GetGroup()==0xfffe) { entry->SetLength(entry->GetValue().length()); } else if( (dictEntry->GetVR()=="UL") || (dictEntry->GetVR()=="SL") ) { entry->SetLength(4); } else if( (dictEntry->GetVR()=="US") || (dictEntry->GetVR()=="SS") ) { entry->SetLength(2); } else if(dictEntry->GetVR()=="SQ") { entry->SetLength(0xffffffff); } else { entry->SetLength(entry->GetValue().length()); } tagHT.insert( PairHT(entry->GetKey(),entry) ); // add in the (multimap) H Table listEntries.insert(debInsertion ,entry); // en tete de liste des Patients ++finInsertion; } i=metaElems->fin(); i++; gdcmDicomDirPatient *p = new gdcmDicomDirPatient(i, --debInsertion, &tagHT, &listEntries); patients.push_front(p); return p; } /** * \ingroup gdcmDicomDir * \brief CallStartMethod */ void gdcmDicomDir::CallStartMethod(void) { progress=0.0f; abort=false; if(startMethod) startMethod(startArg); } /** * \ingroup gdcmDicomDir * \brief CallProgressMethod */ void gdcmDicomDir::CallProgressMethod(void) { if(progressMethod) progressMethod(progressArg); } /** * \ingroup gdcmDicomDir * \brief CallEndMethod */ void gdcmDicomDir::CallEndMethod(void) { progress=1.0f; if(endMethod) endMethod(endArg); } //----------------------------------------------------------------------------- // Private /** * \ingroup gdcmDicomDir * \brief create a 'gdcmDicomDir' from a DICOMDIR gdcmHeader */ void gdcmDicomDir::CreateDicomDir() { // The list is parsed. // When a DicomDir tag ("PATIENT", "STUDY", "SERIE", "IMAGE") is found : // 1 - we save the beginning iterator // 2 - we continue to parse // 3 - we find an other tag // + we create the object for the precedent tag // + loop to 1 - gdcmDicomDirType type=gdcmDicomDir::GDCM_DICOMDIR_META; ListTag::iterator begin; ListTag::iterator end, end2; begin=listEntries.begin(); end=begin; for(ListTag::iterator i=end;i !=listEntries.end();++i) { std::string v=(*i)->GetValue(); if(v=="PATIENT ") { end=end2=i; AddObjectToEnd(type,begin,--end2); type=gdcmDicomDir::GDCM_DICOMDIR_PATIENT; begin=end; } if(v=="STUDY ") { end=end2=i; AddObjectToEnd(type,begin,--end2); type=gdcmDicomDir::GDCM_DICOMDIR_STUDY; begin=end; } if(v=="SERIES") { end=end2=i; AddObjectToEnd(type,begin,--end2); type=gdcmDicomDir::GDCM_DICOMDIR_SERIE; begin=end; } if(v=="IMAGE ") { end=end2=i; AddObjectToEnd(type,begin,--end2); type=gdcmDicomDir::GDCM_DICOMDIR_IMAGE; begin=end; } } end=end2=listEntries.end(); if(begin!=end) AddObjectToEnd(type,begin,--end2); } /** * \ingroup gdcmDicomDir * \brief AddObjectToEnd * @param type * @param begin iterator on the first HeaderEntry within the chained List * @param end iterator on the last HeaderEntry within the chained List */ void gdcmDicomDir::AddObjectToEnd(gdcmDicomDirType type,ListTag::iterator begin,ListTag::iterator end) { if(begin==end) return; switch(type) { case gdcmDicomDir::GDCM_DICOMDIR_META: AddDicomDirMetaToEnd(begin,end); break; case gdcmDicomDir::GDCM_DICOMDIR_PATIENT: AddDicomDirPatientToEnd(begin,end); break; case gdcmDicomDir::GDCM_DICOMDIR_STUDY: AddDicomDirStudyToEnd(begin,end); break; case gdcmDicomDir::GDCM_DICOMDIR_SERIE: AddDicomDirSerieToEnd(begin,end); break; case gdcmDicomDir::GDCM_DICOMDIR_IMAGE: AddDicomDirImageToEnd(begin,end); break; case gdcmDicomDir::GDCM_DICOMDIR_NONE: AddDicomDirImageToEnd(begin,end); //FIXME break; } } /** * \ingroup gdcmDicomDir * \brief Well ... Not realy to end, there is only one occurence * @param begin iterator on the first HeaderEntry within the chained List * @param end iterator on the last HeaderEntry within the chained List */ void gdcmDicomDir::AddDicomDirMetaToEnd(ListTag::iterator begin,ListTag::iterator end) { if(metaElems) delete metaElems; metaElems = new gdcmDicomDirMeta(begin,end,&tagHT,&listEntries); } /** * \ingroup gdcmDicomDir * \brief AddDicomDirPatientToEnd * @param begin iterator on the first HeaderEntry within the chained List * @param end iterator on the last HeaderEntry within the chained List */ void gdcmDicomDir::AddDicomDirPatientToEnd(ListTag::iterator begin,ListTag::iterator end) { patients.push_back(new gdcmDicomDirPatient(begin,end,&tagHT, &listEntries)); } /** * \ingroup gdcmDicomDir * \brief AddDicomDirStudyToEnd * @param begin iterator on the first HeaderEntry within the chained List * @param end iterator on the last HeaderEntry within the chained List */ void gdcmDicomDir::AddDicomDirStudyToEnd(ListTag::iterator begin,ListTag::iterator end) { if(patients.size()>0) { ListDicomDirPatient::iterator itp=patients.end(); itp--; (*itp)->AddDicomDirStudy(new gdcmDicomDirStudy(begin,end,&tagHT, &listEntries)); } } /** * \ingroup gdcmDicomDir * \brief AddDicomDirSerieToEnd * @param begin iterator on the first HeaderEntry within the chained List * @param end iterator on the last HeaderEntry within the chained List */ void gdcmDicomDir::AddDicomDirSerieToEnd(ListTag::iterator begin,ListTag::iterator end) { if(patients.size()>0) { ListDicomDirPatient::iterator itp=patients.end(); itp--; if((*itp)->GetDicomDirStudies().size()>0) { ListDicomDirStudy::iterator itst=(*itp)->GetDicomDirStudies().end(); itst--; (*itst)->AddDicomDirSerie(new gdcmDicomDirSerie(begin,end,&tagHT, &listEntries)); } } } /** * \ingroup gdcmDicomDir * \brief AddDicomDirImageToEnd * @param begin iterator on the first HeaderEntry within the chained List * @param end iterator on the last HeaderEntry within the chained List */ void gdcmDicomDir::AddDicomDirImageToEnd(ListTag::iterator begin,ListTag::iterator end) { if(patients.size()>0) { ListDicomDirPatient::iterator itp=patients.end(); itp--; if((*itp)->GetDicomDirStudies().size()>0) { ListDicomDirStudy::iterator itst=(*itp)->GetDicomDirStudies().end(); itst--; if((*itst)->GetDicomDirSeries().size()>0) { ListDicomDirSerie::iterator its=(*itst)->GetDicomDirSeries().end(); its--; (*its)->AddDicomDirImage(new gdcmDicomDirImage(begin,end,&tagHT, &listEntries)); } } } } /** * \ingroup gdcmDicomDir * \brief for each Header of the chained list, add/update the Patient/Study/Serie/Image info * @param path path of the root directory * @param list chained list of Headers */ void gdcmDicomDir::SetElements(std::string &path, ListHeader &list) { std::string patPrevName="", patPrevID=""; std::string studPrevInstanceUID="", studPrevID=""; std::string serPrevInstanceUID="", serPrevID=""; std::string patCurName, patCurID; std::string studCurInstanceUID, studCurID; std::string serCurInstanceUID, serCurID; SetElement(path,GDCM_DICOMDIR_META,NULL); ListTag::iterator debPat=listEntries.begin(); for(ListHeader::iterator it=list.begin();it!=list.end();++it) { // get the current file characteristics patCurName= (*it)->GetEntryByNumber(0x0010,0x0010); patCurID= (*it)->GetEntryByNumber(0x0010,0x0011); studCurInstanceUID=(*it)->GetEntryByNumber(0x0020,0x000d); studCurID= (*it)->GetEntryByNumber(0x0020,0x0010); serCurInstanceUID= (*it)->GetEntryByNumber(0x0020,0x000e); serCurID= (*it)->GetEntryByNumber(0x0020,0x0011); if(patCurName!=patPrevName || patCurID!=patPrevID) SetElement(path,GDCM_DICOMDIR_PATIENT,*it); // if new Study Deal with 'STUDY' Elements if(studCurInstanceUID!=studPrevInstanceUID || studCurID!=studPrevID) SetElement(path,GDCM_DICOMDIR_STUDY,*it); // if new Serie Deal with 'SERIE' Elements if(serCurInstanceUID!=serPrevInstanceUID || serCurID!=serPrevID) SetElement(path,GDCM_DICOMDIR_SERIE,*it); // Always Deal with 'IMAGE' Elements SetElement(path,GDCM_DICOMDIR_IMAGE,*it); patPrevName= patCurName; patPrevID= patCurID; studPrevInstanceUID=studCurInstanceUID; studPrevID= studCurID; serPrevInstanceUID= serCurInstanceUID; serPrevID= serCurID; } } /** * \ingroup gdcmDicomDir * \brief adds to the HTable and at the end of the Chained List * the gdcmEntries (Dicom Elements) corresponding to the given type * @param path full path file name(only used when type = GDCM_DICOMDIR_IMAGE * @param type gdcmObject type to create (GDCM_DICOMDIR_PATIENT, GDCM_DICOMDIR_STUDY, GDCM_DICOMDIR_SERIE ...) * @param header gdcmHeader of the current file */ void gdcmDicomDir::SetElement(std::string &path,gdcmDicomDirType type,gdcmHeader *header) { std::list elemList; std::list::iterator it; guint16 tmpGr, tmpEl; gdcmDictEntry *dictEntry; gdcmHeaderEntry *entry; std::string val; switch(type) { case GDCM_DICOMDIR_PATIENT: elemList=gdcmGlobal::GetDicomDirElements()->GetDicomDirPatientElements(); break; case GDCM_DICOMDIR_STUDY: elemList=gdcmGlobal::GetDicomDirElements()->GetDicomDirStudyElements(); break; case GDCM_DICOMDIR_SERIE: elemList=gdcmGlobal::GetDicomDirElements()->GetDicomDirSerieElements(); break; case GDCM_DICOMDIR_IMAGE: elemList=gdcmGlobal::GetDicomDirElements()->GetDicomDirImageElements(); break; case GDCM_DICOMDIR_META: elemList=gdcmGlobal::GetDicomDirElements()->GetDicomDirMetaElements(); break; default: return; } for(it=elemList.begin();it!=elemList.end();++it) { tmpGr=it->group; tmpEl=it->elem; dictEntry=GetPubDict()->GetDictEntryByNumber(tmpGr,tmpEl); entry=new gdcmHeaderEntry(dictEntry); entry->SetOffset(0); // just to avoid missprinting if(header) val=header->GetEntryByNumber(tmpGr,tmpEl); else val=GDCM_UNFOUND; if(val==GDCM_UNFOUND) { if((tmpGr==0x0004) &&(tmpEl==0x1130) ) // File-set ID { // force to the *end* File Name val=GetName(path); } else if( (tmpGr==0x0004) && (tmpEl==0x1500) ) // Only used for image { if(header->GetFileName().substr(0,path.length())!=path) { dbg.Verbose(0, "gdcmDicomDir::SetElement : the base path of file name is incorrect"); val=header->GetFileName(); } else { val=&(header->GetFileName().c_str()[path.length()]); } } else { val=it->value; } } else { if (header->GetEntryLengthByNumber(tmpGr,tmpEl)== 0) val=it->value; } entry->SetValue(val); if(dictEntry) { if(dictEntry->GetGroup()==0xfffe) { entry->SetLength(entry->GetValue().length()); } else if( (dictEntry->GetVR()=="UL") || (dictEntry->GetVR()=="SL") ) { entry->SetLength(4); } else if( (dictEntry->GetVR()=="US") || (dictEntry->GetVR()=="SS") ) { entry->SetLength(2); } else if(dictEntry->GetVR()=="SQ") { entry->SetLength(0xffffffff); } else { entry->SetLength(entry->GetValue().length()); } } //AddHeaderEntry(entry); // both in H Table and in chained list tagHT.insert( PairHT( entry->GetKey(),entry) ); listEntries.push_back(entry); //wasUpdated = 1; // is private } } /** * \ingroup gdcmDicomDir * \brief compares two dgcmHeaders */ bool gdcmDicomDir::HeaderLessThan(gdcmHeader *header1,gdcmHeader *header2) { return(*header1<*header2); } /** * \ingroup gdcmDicomDir * \brief Sets the accurate value for the (0x0004,0x1220) element of a DICOMDIR */ void gdcmDicomDir::UpdateDirectoryRecordSequenceLength() { int offset = 0; ListTag::iterator it; guint16 gr, el; std::string vr; for(it=listEntries.begin();it!=listEntries.end();++it) { gr = (*it)->GetGroup(); el = (*it)->GetElement(); vr = (*it)->GetVR(); if (gr !=0xfffe) { if ( (vr == "OB") || (vr == "OW") || (vr == "SQ") ) { offset += 4; // explicit VR AND OB, OW, SQ : 4 more bytes } offset += 2 + 2 + 4 + (*it)->GetLength(); } else { offset += 4; // delimiters don't have a value. } } //bool res=SetEntryLengthByNumber(offset, 0x0004, 0x1220); // Hope there is no dupps. SetEntryLengthByNumber(offset, 0x0004, 0x1220); // Hope there is no dupps. return; } //-----------------------------------------------------------------------------