// gdcmDocument.h //----------------------------------------------------------------------------- #ifndef GDCMDOCUMENT_H #define GDCMDOCUMENT_H #include "gdcmCommon.h" #include "gdcmVR.h" #include "gdcmTS.h" #include "gdcmException.h" #include "gdcmDictSet.h" #include "gdcmDocEntry.h" #include #include //----------------------------------------------------------------------------- typedef std::string VRKey; typedef std::string VRAtr; typedef std::map VRHT; // Value Representation Hash Table typedef std::multimap TagDocEntryHT; typedef std::pair PairHT; typedef std::pair IterHT; /// for linking together the Elements typedef std::list ListTag; typedef std::string GroupKey; typedef std::map GroupHT; //----------------------------------------------------------------------------- /** * \brief used by both gdcmHeader and gdcmDicomDir */ class GDCM_EXPORT gdcmDocument : public gdcmElementSet { private: /// Public dictionary used to parse this header gdcmDict *RefPubDict; /// \brief Optional "shadow dictionary" (private elements) used to parse /// this header gdcmDict *RefShaDict; /// Equals 1 if a gdcmDocEntry was added post parsing int wasUpdated; /// \brief Equals =1 if user wants to skip shadow groups while parsing /// (to save space) int ignoreShadow; /// \brief Size threshold above which an element value will NOT be loaded /// in memory (to avoid loading the image/volume itself). By default, /// this upper bound is fixed to 1024 bytes (which might look reasonable /// when one considers the definition of the various VR contents). guint32 MaxSizeLoadEntry; /// \brief Size threshold above which an element value will NOT be *printed* /// in order no to polute the screen output. By default, this upper bound /// is fixed to 64 bytes. guint32 MaxSizePrintEntry; protected: /// Refering underlying filename. std::string filename; /// \brief SWap code (e.g. Big Endian, Little Endian, Bad Big Endian, /// Bad Little Endian) according to the processor Endianity and /// what is written on disc. int sw; /// File Pointer, opened during Header parsing. FILE *fp; /// ACR, ACR_LIBIDO, ExplicitVR, ImplicitVR, Unknown FileType filetype; /// After opening the file, we read HEADER_LENGTH_TO_READ bytes. static const unsigned int HEADER_LENGTH_TO_READ; /// \brief Elements whose value is longer than MAX_SIZE_LOAD_ELEMENT_VALUE /// are NOT loaded. static const unsigned int MAX_SIZE_LOAD_ELEMENT_VALUE; /// \brief Elements whose value is longer than MAX_SIZE_PRINT_ELEMENT_VALUE /// are NOT printed. static const unsigned int MAX_SIZE_PRINT_ELEMENT_VALUE; /// Hash Table (multimap), to provide fast access TagDocEntryHT tagHT; /// Chained list, to keep the 'spacial' ordering ListTag listEntries; /// Will be set 1 if user asks to 'go inside' the 'sequences' (VR = "SQ") int enableSequences; /// \brief Amount of printed details for each Header Entry (Dicom Element): /// 0 : stands for the least detail level. int printLevel; public: // Print /// Canonical Printing method (see also gdcmDocument::SetPrintLevel) virtual void Print (std::ostream &os = std::cout) {PrintEntry(os);}; virtual void PrintEntry (std::ostream &os = std::cout); // the 2 following will be merged virtual void PrintPubDict (std::ostream &os = std::cout); virtual void PrintShaDict (std::ostream &os = std::cout); // Dictionnaries gdcmDict *GetPubDict(void); gdcmDict *GetShaDict(void); bool SetShaDict(gdcmDict *dict); bool SetShaDict(DictKey dictName); // Informations contained in the parser virtual bool IsReadable(void); bool IsImplicitVRLittleEndianTransferSyntax(void); bool IsExplicitVRLittleEndianTransferSyntax(void); bool IsDeflatedExplicitVRLittleEndianTransferSyntax(void); bool IsExplicitVRBigEndianTransferSyntax(void); FileType GetFileType(void); // Read (used in gdcmFile, gdcmDicomDir) FILE *OpenFile(bool exception_on_error = false) throw(gdcmFileError); bool CloseFile(void); // Write (used in gdcmFile, gdcmDicomDir) virtual bool Write(FILE *, FileType); virtual void WriteEntryTagVRLength(gdcmDocEntry *tag, FILE *_fp, FileType type); virtual void WriteEntryValue(gdcmDocEntry *tag,FILE *_fp,FileType type); virtual bool WriteEntry(gdcmDocEntry *tag,FILE *_fp,FileType type); virtual bool WriteEntries(FILE *_fp,FileType type); void WriteEntriesDeprecated(FILE *_fp,FileType type); // JPR gdcmDocEntry * ReplaceOrCreateByNumber(std::string Value, guint16 Group, guint16 Elem); bool ReplaceIfExistByNumber (char *Value, guint16 Group, guint16 Elem); // System access guint16 SwapShort(guint16); // needed by gdcmFile guint32 SwapLong(guint32); // needed by gdcmFile guint16 UnswapShort(guint16); // needed by gdcmFile guint32 UnswapLong(guint32); // needed by gdcmFile protected: // Constructor and destructor are protected to forbid end user // to instanciate from this class gdcmDocument (only gdcmHeader and // gdcmDicomDir are meaningfull). gdcmDocument(bool exception_on_error = false); gdcmDocument(const char *inFilename, bool exception_on_error = false, bool enable_sequences = false, bool ignore_shadow = false); virtual ~gdcmDocument(void); // Entry int CheckIfEntryExistByNumber(guint16 Group, guint16 Elem ); // int ! virtual std::string GetEntryByName (std::string tagName); virtual std::string GetEntryVRByName (std::string tagName); virtual std::string GetEntryByNumber (guint16 group, guint16 element); virtual std::string GetEntryVRByNumber(guint16 group, guint16 element); virtual int GetEntryLengthByNumber(guint16 group, guint16 element); virtual bool SetEntryByName (std::string content, std::string tagName); virtual bool SetEntryByNumber(std::string content, guint16 group, guint16 element); virtual bool SetEntryLengthByNumber(guint32 length, guint16 group, guint16 element); virtual size_t GetEntryOffsetByNumber (guint16 Group, guint16 Elem); virtual void *GetEntryVoidAreaByNumber(guint16 Group, guint16 Elem); virtual void *LoadEntryVoidArea (guint16 Group, guint16 Element); virtual bool SetEntryVoidAreaByNumber(void *a, guint16 Group, guint16 Elem); virtual void UpdateShaEntries(void); // Header entry gdcmDocEntry *GetDocEntryByNumber (guint16 group, guint16 element); gdcmDocEntry *GetDocEntryByName (std::string Name); IterHT GetDocEntrySameNumber(guint16 group, guint16 element); // IterHT GetDocEntrySameName (std::string Name); void LoadDocEntrySafe(gdcmDocEntry *); void UpdateGroupLength(bool SkipSequence = false, FileType type = ImplicitVR); void AddDocEntry (gdcmDocEntry *); private: // Read bool LoadDocEntries(bool exception_on_error = false) throw(gdcmFormatError); void LoadDocEntry (gdcmDocEntry *); void FindDocEntryLength(gdcmDocEntry *); void FindDocEntryVR (gdcmDocEntry *); bool CheckDocEntryVR (gdcmDocEntry *, VRKey); std::string GetDocEntryValue (gdcmDocEntry *); std::string GetDocEntryUnvalue(gdcmDocEntry *); void SkipDocEntry (gdcmDocEntry *); void FixDocEntryFoundLength(gdcmDocEntry *, guint32); bool IsDocEntryAnInteger (gdcmDocEntry *); guint32 FindDocEntryLengthOB(void); guint16 ReadInt16(void); guint32 ReadInt32(void); void SkipBytes(guint32); void Initialise(void); bool CheckSwap(void); void SwitchSwapToBigEndian(void); void SetMaxSizeLoadEntry(long); void SetMaxSizePrintEntry(long); // DictEntry related utilities gdcmDictEntry *GetDictEntryByName (std::string Name); gdcmDictEntry *GetDictEntryByNumber(guint16, guint16); gdcmDictEntry *NewVirtualDictEntry(guint16 group, guint16 element, std::string vr = "unkn", std::string fourth = "unkn", std::string name = "unkn"); //gdcmDictEntry *NewVirtualDictEntry(gdcmDocEntry *); // never defined // DocEntry related utilities gdcmDocEntry *ReadNextDocEntry (void); gdcmDocEntry *NewDocEntryByNumber(guint16 group, guint16 element); gdcmDocEntry *NewDocEntryByName (std::string Name); // Deprecated (Not used) --> commented out //gdcmDocEntry *NewManualDocEntryToPubDict(std::string NewTagName, // std::string VR); guint32 GenerateFreeTagKeyInGroup(guint16 group); public: // Accessors: /// Accessor to \ref printLevel void SetPrintLevel(int level) { printLevel = level; }; /// Accessor to \ref filename inline std::string GetFileName(void) {return filename;} /// Accessor to \ref filename inline void SetFileName(char* fileName) {filename = fileName;} /// Accessor to \ref gdcmDocument::tagHT inline TagDocEntryHT &GetEntry(void) { return tagHT; }; /// Accessor to \ref gdcmDocument::listEntries inline ListTag &GetListEntry(void) { return listEntries; }; /// 'Swap code' accessor (see \ref sw ) inline int GetSwapCode(void) { return sw; } }; //----------------------------------------------------------------------------- #endif