/*========================================================================= Program: gdcm Module: $RCSfile: gdcmDocument.h,v $ Language: C++ Date: $Date: 2005/01/20 11:07:07 $ Version: $Revision: 1.93 $ Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de l'Image). All rights reserved. See Doc/License.txt or http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the above copyright notices for more information. =========================================================================*/ #ifndef GDCMDOCUMENT_H #define GDCMDOCUMENT_H #include "gdcmVR.h" #include "gdcmDict.h" #include "gdcmElementSet.h" #include #include #include namespace gdcm { class ValEntry; class BinEntry; class SeqEntry; class Dict; class RLEFramesInfo; class JPEGFragmentsInfo; //----------------------------------------------------------------------------- /** * \brief Derived by both Header and DicomDir */ class GDCM_EXPORT Document : public ElementSet { public: // Informations contained in the parser virtual bool IsReadable(); FileType GetFileType(); std::string GetTransferSyntax(); RLEFramesInfo *GetRLEInfo() { return RLEInfo; } JPEGFragmentsInfo *GetJPEGInfo() { return JPEGInfo; } // Dictionaries virtual void PrintPubDict (std::ostream &os = std::cout); virtual void PrintShaDict (std::ostream &os = std::cout); Dict* GetPubDict(); Dict* GetShaDict(); bool SetShaDict(Dict* dict); bool SetShaDict(DictKey const &dictName); // Swap code /// 'Swap code' accessor (see \ref SwapCode ) int GetSwapCode() { return SwapCode; } // System access (meaning endian related !?) uint16_t SwapShort(uint16_t); // needed by File uint32_t SwapLong(uint32_t); // needed by File uint16_t UnswapShort(uint16_t); // needed by File uint32_t UnswapLong(uint32_t); // needed by File // Ordering of Documents bool operator<(Document &document); public: // File I/O /// Accessor to \ref Filename const std::string &GetFileName() const { return Filename; } /// Accessor to \ref Filename void SetFileName(std::string const &fileName) { Filename = fileName; } std::ifstream *OpenFile(); bool CloseFile(); void WriteContent( std::ofstream *fp, FileType type ); // Content entries virtual bool SetEntry(std::string const &content, uint16_t group, uint16_t element); virtual bool SetEntry(uint8_t *content, int lgth, uint16_t group, uint16_t element); virtual bool SetEntry(std::string const &content, ValEntry *entry); virtual bool SetEntry(uint8_t *content, int lgth, BinEntry *entry); virtual void *GetEntryBinArea(uint16_t group, uint16_t elem); virtual std::string GetEntry (uint16_t group, uint16_t elem); virtual std::string GetEntryVR(uint16_t group, uint16_t elem); virtual int GetEntryLength(uint16_t group, uint16_t elem); DocEntry *GetDocEntry(uint16_t group, uint16_t element); ValEntry *GetValEntry(uint16_t group, uint16_t element); BinEntry *GetBinEntry(uint16_t group, uint16_t element); SeqEntry *GetSeqEntry(uint16_t group, uint16_t element); ValEntry *ReplaceOrCreate(std::string const &value, uint16_t group, uint16_t elem, TagName const &vr = GDCM_UNKNOWN); BinEntry *ReplaceOrCreate(uint8_t* binArea, int lgth, uint16_t group, uint16_t elem, TagName const &vr = GDCM_UNKNOWN); SeqEntry *ReplaceOrCreate(uint16_t group, uint16_t elem); bool ReplaceIfExist(std::string const &value, uint16_t group, uint16_t elem ); bool CheckIfEntryExist(uint16_t group, uint16_t elem ); virtual void LoadEntryBinArea(uint16_t group, uint16_t elem); virtual void LoadEntryBinArea(BinEntry *entry); void LoadDocEntrySafe(DocEntry *entry); /*TagDocEntryHT *BuildFlatHashTable();*/ /// Return the Transfer Syntax as a string std::string GetTransferSyntaxName(); bool IsDicomV3(); protected: // Methods // Constructor and destructor are protected to forbid end user // to instanciate from this class Document (only Header and // DicomDir are meaningfull). Document(); Document( std::string const &filename ); virtual ~Document(); void ReadAndSkipEncapsulatedBasicOffsetTable(); void ComputeRLEInfo(); void ComputeJPEGFragmentInfo(); // Entry int ComputeGroup0002Length( FileType filetype ); // Variables /// Refering underlying filename. std::string Filename; /// \brief Swap code gives an information on the byte order of a /// supposed to be an int32, as it's read on disc /// (depending on the image Transfer Syntax *and* on the processor endianess) /// as opposed as it should in memory to be dealt as an int32. /// For instance : /// - a 'Little Endian' image, read with a little endian processor /// will have a SwapCode= 1234 (the order is OK; nothing to do) /// - a 'Little Endian' image, read with a big endian procesor /// will have a SwapCode= 4321 (the order is wrong; int32 an int16 must be /// swapped) /// note : values 2143, 4321, 3412 remain for the ACR-NEMA time, and /// the well known 'Bad Big Endian' and 'Bad Little Endian' codes int SwapCode; ///\brief whether we already parsed group 0002 bool Group0002Parsed; ///\brief whether file has a DCM Preamble bool HasDCMPreamble; /// File Pointer, opened during Header parsing. std::ifstream *Fp; /// ACR, ACR_LIBIDO, ExplicitVR, ImplicitVR, Unknown FileType Filetype; /// After opening the file, we read HEADER_LENGTH_TO_READ bytes. static const unsigned int HEADER_LENGTH_TO_READ; /// \brief Elements whose value is longer than MAX_SIZE_LOAD_ELEMENT_VALUE /// are NOT loaded. static const unsigned int MAX_SIZE_LOAD_ELEMENT_VALUE; /// \brief Elements whose value is longer than MAX_SIZE_PRINT_ELEMENT_VALUE /// are NOT printed. static const unsigned int MAX_SIZE_PRINT_ELEMENT_VALUE; /// Store the RLE frames info obtained during parsing of pixels. RLEFramesInfo *RLEInfo; /// Store the JPEG fragments info obtained during parsing of pixels. JPEGFragmentsInfo *JPEGInfo; private: // Methods // Read void ParseDES(DocEntrySet *set,long offset, long l_max, bool delim_mode); void ParseSQ (SeqEntry *seq, long offset, long l_max, bool delim_mode); void LoadDocEntry (DocEntry *e); void FindDocEntryLength (DocEntry *e) throw ( FormatError ); uint32_t FindDocEntryLengthOBOrOW() throw( FormatUnexpected ); std::string FindDocEntryVR(); bool CheckDocEntryVR (VRKey k); std::string GetDocEntryValue (DocEntry *entry); std::string GetDocEntryUnvalue(DocEntry *entry); void SkipDocEntry (DocEntry *entry); void SkipToNextDocEntry (DocEntry *entry); void FixDocEntryFoundLength(DocEntry *entry,uint32_t l); bool IsDocEntryAnInteger (DocEntry *entry); uint16_t ReadInt16() throw ( FormatError ); uint32_t ReadInt32() throw ( FormatError ); void SkipBytes(uint32_t); bool ReadTag(uint16_t, uint16_t); uint32_t ReadTagLength(uint16_t, uint16_t); void Initialize(); bool CheckSwap(); void SwitchByteSwapCode(); void SetMaxSizeLoadEntry(long); void SetMaxSizePrintEntry(long); // DocEntry related utilities DocEntry *ReadNextDocEntry(); uint32_t GenerateFreeTagKeyInGroup(uint16_t group); /* void BuildFlatHashTableRecurse( TagDocEntryHT &builtHT, DocEntrySet* set );*/ void HandleBrokenEndian(uint16_t &group, uint16_t &elem); void HandleOutOfGroup0002(uint16_t &group, uint16_t &elem); // Variables /// Public dictionary used to parse this header Dict *RefPubDict; /// \brief Optional "shadow dictionary" (private elements) used to parse /// this header Dict *RefShaDict; /// \brief Size threshold above which an element value will NOT be loaded /// in memory (to avoid loading the image/volume itself). By default, /// this upper bound is fixed to 1024 bytes (which might look reasonable /// when one considers the definition of the various VR contents). uint32_t MaxSizeLoadEntry; /// \brief Size threshold above which an element value will NOT be *printed* /// in order no to polute the screen output. By default, this upper bound /// is fixed to 64 bytes. uint32_t MaxSizePrintEntry; private: friend class File; }; } // end namespace gdcm //----------------------------------------------------------------------------- #endif