/*========================================================================= Program: gdcm Module: $RCSfile: gdcmDocument.h,v $ Language: C++ Date: $Date: 2005/07/08 10:13:38 $ Version: $Revision: 1.115 $ Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de l'Image). All rights reserved. See Doc/License.txt or http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the above copyright notices for more information. =========================================================================*/ #ifndef GDCMDOCUMENT_H #define GDCMDOCUMENT_H #include "gdcmVR.h" #include "gdcmDict.h" #include "gdcmElementSet.h" #include "gdcmException.h" #include #include #include #define NO_SEQ 0x00000001 // Don't load odd groups #define NO_SHADOW 0x00000002 // Don't load Sequences #define NO_SHADOWSEQ 0x00000004 // Don't load Sequences if they belong to odd group // (*exclusive* from NO_SEQ and NO_SHADOW) namespace gdcm { class ValEntry; class BinEntry; class SeqEntry; class Dict; //----------------------------------------------------------------------------- /** * \brief Derived by both gdcm::File and gdcm::DicomDir */ class GDCM_EXPORT Document : public ElementSet { public: typedef std::list ListElements; // Loading virtual bool Load( std::string const &filename ); virtual bool Load( ); // Dictionaries Dict *GetPubDict(); Dict *GetShaDict(); bool SetShaDict(Dict *dict); bool SetShaDict(DictKey const &dictName); // Informations contained in the gdcm::Document virtual bool IsReadable(); bool IsDicomV3(); bool IsPapyrus(); FileType GetFileType(); std::string GetTransferSyntax(); /// Return the Transfer Syntax as a string std::string GetTransferSyntaxName(); // Swap code /// 'Swap code' accessor (see \ref SwapCode ) int GetSwapCode() { return SwapCode; } // System access (meaning endian related !?) uint16_t SwapShort(uint16_t); uint32_t SwapLong(uint32_t); /// \brief Unswaps back the bytes of 2-bytes long integer /// so they agree with the processor order. uint16_t UnswapShort(uint16_t a) { return SwapShort(a);} /// \brief Unswaps back the bytes of 4-byte long integer /// so they agree with the processor order. uint32_t UnswapLong(uint32_t a) { return SwapLong(a);} // File I/O /// Accessor to \ref Filename const std::string &GetFileName() const { return Filename; } /// Accessor to \ref Filename virtual void SetFileName(std::string const &fileName) { if (Filename != fileName) Filename = fileName, IsDocumentModified = true; } std::ifstream *OpenFile(); bool CloseFile(); void WriteContent( std::ofstream *fp, FileType type ); // Content entries virtual void LoadEntryBinArea(uint16_t group, uint16_t elem); virtual void LoadEntryBinArea(BinEntry *entry); void LoadDocEntrySafe(DocEntry *entry); // Ordering of Documents bool operator<(Document &document); /** * \brief Sets the LoadMode as a boolean string. * NO_SEQ, NO_SHADOW, NO_SHADOWSEQ ... (nothing more, right now) * WARNING : before using NO_SHADOW, be sure *all* your files * contain accurate values in the 0x0000 element (if any) * of *each* Shadow Group. The parser will fail if the size is wrong ! * @param mode Load mode to be used */ void SetLoadMode (int mode) { if (LoadMode != mode) LoadMode = mode, IsDocumentModified = true; } protected: // Methods // Constructor and destructor are protected to forbid end user // to instanciate from this class Document (only gdcm::File and // gdcm::DicomDir are meaningfull). Document(); Document( std::string const &filename ); virtual ~Document(); uint16_t ReadInt16() throw ( FormatError ); uint32_t ReadInt32() throw ( FormatError ); void SkipBytes(uint32_t); int ComputeGroup0002Length( FileType filetype ); // Variables /// Refering underlying filename. std::string Filename; /// \brief Swap code gives an information on the byte order of a /// supposed to be an int32, as it's read on disc /// (depending on the image Transfer Syntax *and* on the processor endianess) /// as opposed as it should in memory to be dealt as an int32. /// For instance : /// - a 'Little Endian' image, read with a little endian processor /// will have a SwapCode= 1234 (the order is OK; nothing to do) /// - a 'Little Endian' image, read with a big endian procesor /// will have a SwapCode= 4321 (the order is wrong; int32 an int16 must be /// swapped) /// note : values 2143, 4321, 3412 remain for the ACR-NEMA time, and /// the well known 'Bad Big Endian' and 'Bad Little Endian' codes int SwapCode; ///\brief whether we already parsed group 0002 (Meta Elements) bool Group0002Parsed; ///\brief whether file has a DCM Preamble bool HasDCMPreamble; /// File Pointer, opened during Document parsing. std::ifstream *Fp; /// ACR, ACR_LIBIDO, ExplicitVR, ImplicitVR, Unknown FileType Filetype; /// After opening the file, we read HEADER_LENGTH_TO_READ bytes. static const unsigned int HEADER_LENGTH_TO_READ; /// \brief Elements whose value is longer than MAX_SIZE_LOAD_ELEMENT_VALUE /// are NOT loaded. static const unsigned int MAX_SIZE_LOAD_ELEMENT_VALUE; /// List of elements to Anonymize ListElements AnonymizeList; /// \brief Bit string integer (each one considered as a boolean) /// Bit 0 : Skip Sequences, if possible /// Bit 1 : Skip Shadow Groups if possible /// Probabely, some more to add int LoadMode; /// Whether the gdcm::Document is already parsed/loaded /// - False from the creation of the gdcm::Document untill /// gdcm::Document:Load() bool IsDocumentAlreadyLoaded; // FIXME : probabely useless now bool IsDocumentModified; private: // Methods void Initialize(); bool DoTheLoadingDocumentJob(); // Read void ParseDES(DocEntrySet *set, long offset, long l_max, bool delim_mode); void ParseSQ (SeqEntry *seq, long offset, long l_max, bool delim_mode); void LoadDocEntry (DocEntry *e); void FindDocEntryLength (DocEntry *e) throw ( FormatError ); uint32_t FindDocEntryLengthOBOrOW() throw( FormatUnexpected ); std::string FindDocEntryVR(); bool CheckDocEntryVR (VRKey k); std::string GetDocEntryValue (DocEntry *entry); std::string GetDocEntryUnvalue(DocEntry *entry); void SkipDocEntry (DocEntry *entry); void SkipToNextDocEntry (DocEntry *entry); void FixDocEntryFoundLength(DocEntry *entry, uint32_t l); bool IsDocEntryAnInteger (DocEntry *entry); bool CheckSwap(); void SwitchByteSwapCode(); void SetMaxSizeLoadEntry(long); // DocEntry related utilities DocEntry *ReadNextDocEntry(); void HandleBrokenEndian (uint16_t &group, uint16_t &elem); void HandleOutOfGroup0002(uint16_t &group, uint16_t &elem); // Variables /// Public dictionary used to parse this header Dict *RefPubDict; /// \brief Optional "shadow dictionary" (private elements) used to parse /// this header Dict *RefShaDict; /// \brief Size threshold above which an element value will NOT be loaded /// in memory (to avoid loading the image/volume itself). By default, /// this upper bound is fixed to 1024 bytes (which might look reasonable /// when one considers the definition of the various VR contents). uint32_t MaxSizeLoadEntry; // uint32_t GenerateFreeTagKeyInGroup(uint16_t group); // void BuildFlatHashTableRecurse( TagDocEntryHT &builtHT, // DocEntrySet *set ); }; } // end namespace gdcm //----------------------------------------------------------------------------- #endif