// gdcmElementSet.cxx //----------------------------------------------------------------------------- // #include "gdcmElementSet.h" #include "gdcmTS.h" //----------------------------------------------------------------------------- // Constructor / Destructor /** * \ingroup gdcmElementSet * \brief Constructor from a given gdcmElementSet */ gdcmDocEntrySet::gdcmDocEntrySet() { } /** * \ingroup gdcmElementSet * \brief Canonical destructor. */ gdcmElementSet::~gdcmElementSet() { /* for(tous les DocEntry) { delete *cc; } */ } //----------------------------------------------------------------------------- // Public //----------------------------------------------------------------------------- // Protected //----------------------------------------------------------------------------- // Private /** * \brief Find the value Length of the passed Header Entry * @param Entry Header Entry whose length of the value shall be loaded. */ void gdcmElementSet::FindDocEntryLength (gdcmDocEntry *Entry) { guint16 element = Entry->GetElement(); //guint16 group = Entry->GetGroup(); //FIXME std::string vr = Entry->GetVR(); guint16 length16; if ( (filetype == ExplicitVR) && (! Entry->IsImplicitVR()) ) { if ( (vr=="OB") || (vr=="OW") || (vr=="SQ") || (vr=="UN") ) { // The following reserved two bytes (see PS 3.5-2001, section // 7.1.2 Data element structure with explicit vr p27) must be // skipped before proceeding on reading the length on 4 bytes. fseek(fp, 2L, SEEK_CUR); guint32 length32 = ReadInt32(); if ( (vr == "OB") && (length32 == 0xffffffff) ) { Entry->SetLength(FindHeaderEntryLengthOB()); return; } FixHeaderEntryFoundLength(Entry, length32); return; } // Length is encoded on 2 bytes. length16 = ReadInt16(); // We can tell the current file is encoded in big endian (like // Data/US-RGB-8-epicard) when we find the "Transfer Syntax" tag // and it's value is the one of the encoding of a big endian file. // In order to deal with such big endian encoded files, we have // (at least) two strategies: // * when we load the "Transfer Syntax" tag with value of big endian // encoding, we raise the proper flags. Then we wait for the end // of the META group (0x0002) among which is "Transfer Syntax", // before switching the swap code to big endian. We have to postpone // the switching of the swap code since the META group is fully encoded // in little endian, and big endian coding only starts at the next // group. The corresponding code can be hard to analyse and adds // many additional unnecessary tests for regular tags. // * the second strategy consists in waiting for trouble, that shall // appear when we find the first group with big endian encoding. This // is easy to detect since the length of a "Group Length" tag (the // ones with zero as element number) has to be of 4 (0x0004). When we // encounter 1024 (0x0400) chances are the encoding changed and we // found a group with big endian encoding. // We shall use this second strategy. In order to make sure that we // can interpret the presence of an apparently big endian encoded // length of a "Group Length" without committing a big mistake, we // add an additional check: we look in the already parsed elements // for the presence of a "Transfer Syntax" whose value has to be "big // endian encoding". When this is the case, chances are we have got our // hands on a big endian encoded file: we switch the swap code to // big endian and proceed... if ( (element == 0x0000) && (length16 == 0x0400) ) { if ( ! IsExplicitVRBigEndianTransferSyntax() ) { dbg.Verbose(0, "gdcmDocument::FindLength", "not explicit VR"); errno = 1; return; } length16 = 4; SwitchSwapToBigEndian(); // Restore the unproperly loaded values i.e. the group, the element // and the dictionary entry depending on them. guint16 CorrectGroup = SwapShort(Entry->GetGroup()); guint16 CorrectElem = SwapShort(Entry->GetElement()); gdcmDictEntry * NewTag = GetDictEntryByNumber(CorrectGroup, CorrectElem); if (!NewTag) { // This correct tag is not in the dictionary. Create a new one. NewTag = NewVirtualDictEntry(CorrectGroup, CorrectElem); } // FIXME this can create a memory leaks on the old entry that be // left unreferenced. Entry->SetDictEntry(NewTag); } // Heuristic: well some files are really ill-formed. if ( length16 == 0xffff) { length16 = 0; //dbg.Verbose(0, "gdcmDocument::FindLength", // "Erroneous element length fixed."); // Actually, length= 0xffff means that we deal with // Unknown Sequence Length } FixHeaderEntryFoundLength(Entry, (guint32)length16); return; } else { // Either implicit VR or a non DICOM conformal (see note below) explicit // VR that ommited the VR of (at least) this element. Farts happen. // [Note: according to the part 5, PS 3.5-2001, section 7.1 p25 // on Data elements "Implicit and Explicit VR Data Elements shall // not coexist in a Data Set and Data Sets nested within it".] // Length is on 4 bytes. FixHeaderEntryFoundLength(Entry, ReadInt32()); return; } }