// $Header: /cvs/public/gdcm/src/Attic/gdcmHeader.h,v 1.30 2003/07/01 09:29:56 jpr Exp $ #ifndef GDCMHEADER_H #define GDCMHEADER_H #include #include "gdcmCommon.h" #include "gdcmUtil.h" #include "gdcmException.h" #include "gdcmDictSet.h" #include "gdcmElValue.h" #include "gdcmElValSet.h" typedef std::string VRKey; typedef std::string VRAtr; typedef std::map VRHT; // Value Representation Hash Table /// The purpose of an instance of gdcmHeader is to act as a container of /// all the DICOM elements and their corresponding values (and /// additionaly the corresponding DICOM dictionary entry) of the header /// of a DICOM file. /// /// The typical usage of instances of class gdcmHeader is to classify a set of /// dicom files according to header information e.g. to create a file hierarchy /// reflecting the Patient/Study/Serie informations, or extracting a given /// SerieId. Accesing the content (image[s] or volume[s]) is beyond the /// functionality of this class and belongs to gdmcFile. /// \note The various entries of the explicit value representation (VR) shall /// be managed within a dictionary which is shared by all gdcmHeader /// instances. /// \note The gdcmHeader::Set*Tag* family members cannot be defined as /// protected due to Swig limitations for as Has_a dependency between /// gdcmFile and gdcmHeader. class GDCM_EXPORT gdcmHeader { void SkipBytes(guint32); private: /// Pointer to the Value Representation Hash Table which contains all /// the VR of the DICOM version3 public dictionary. gdcmVR *dicom_vr; // Not a class member for thread-safety reasons /// Pointer to global dictionary container gdcmDictSet* Dicts; // Not a class member for thread-safety reasons /// Public dictionary used to parse this header gdcmDict* RefPubDict; /// Optional "shadow dictionary" (private elements) used to parse this /// header gdcmDict* RefShaDict; /// Pointer to the Transfert Syntax Hash Table which contains all /// the TS of the DICOM version3 public dictionary. gdcmTS *dicom_ts; // Not a class member for thread-safety reasons /// ELement VALueS parsed with the PUBlic dictionary. gdcmElValSet PubElValSet; /// ELement VALueS parsed with the SHAdow dictionary. gdcmElValSet ShaElValSet; /// Refering underlying filename. std::string filename; // FIXME sw should be an enum e.g. //enum EndianType { //LittleEndian, //BadLittleEndian, //BigEndian, //BadBigEndian}; /// Swap code e.g. little, big, bad-big, bad-little endian). Warning: /// this code is not fixed during header parsing. int sw; /// Size treshold above which an element value will NOT be loaded in /// memory (to avoid loading the image/volume itself). By default, /// this upper bound is fixed to 1024 bytes (which might look reasonable /// when one considers the definition of the various VR contents). guint32 MaxSizeLoadElementValue; guint16 ReadInt16(void); guint32 ReadInt32(void); guint32 FindLengthOB(void); void Initialise(void); void CheckSwap(void); void SwitchSwapToBigEndian(void); // CLEAN ME: NewManualElValToPubDict is NOT called any more. gdcmElValue* NewManualElValToPubDict(std::string NewTagName, std::string VR); void SetMaxSizeLoadElementValue(long); gdcmDictEntry * GetDictEntryByNumber(guint16, guint16); gdcmDictEntry * GetDictEntryByName(std::string Name); // ElValue related utilities gdcmElValue * ReadNextElement(void); gdcmElValue * NewElValueByNumber(guint16 group, guint16 element); gdcmElValue * NewElValueByName(std::string Name); void FindLength(gdcmElValue *); void FindVR(gdcmElValue *); void LoadElementValue(gdcmElValue *); void LoadElementValueSafe(gdcmElValue *); void SkipElementValue(gdcmElValue *); void FixFoundLength(gdcmElValue*, guint32); bool IsAnInteger(gdcmElValue *); void LoadElements(void); protected: FILE * fp; FileType filetype; gdcmElValue * GetElValueByNumber(guint16 group, guint16 element); int CheckIfExistByNumber(guint16 Group, guint16 Elem ); guint16 SwapShort(guint16); // needed by gdcmFile guint32 SwapLong(guint32); // for JPEG Files :-( bool OpenFile(bool exception_on_error = false) throw(gdcmFileError); bool CloseFile(void); int write(std::ostream&); int anonymize(std::ostream&); // FIXME : anonymize should be a friend ? public: bool IsReadable(void); bool IsImplicitVRLittleEndianTransferSyntax(void); bool IsExplicitVRLittleEndianTransferSyntax(void); bool IsDeflatedExplicitVRLittleEndianTransferSyntax(void); bool IsExplicitVRBigEndianTransferSyntax(void); bool IsJPEGBaseLineProcess1TransferSyntax(void); bool IsJPEGExtendedProcess2_4TransferSyntax(void); bool IsJPEGExtendedProcess3_5TransferSyntax(void); bool IsJPEGSpectralSelectionProcess6_8TransferSyntax(void); bool IsJPEGLossless(void); bool IsDicomV3(void); virtual void ParseHeader(bool exception_on_error = false) throw(gdcmFormatError); gdcmHeader(const char *filename, bool exception_on_error = false); gdcmHeader( bool exception_on_error = false); virtual ~gdcmHeader(); size_t GetPixelOffset(void); int GetSwapCode(void) { return sw; } // TODO Swig int SetPubDict(std::string filename); // When some proprietary shadow groups are disclosed, we can set up // an additional specific dictionary to access extra information. // TODO Swig int SetShaDict(std::string filename); std::string GetPubElValByName (std::string TagName); std::string GetPubElValRepByName (std::string TagName); std::string GetPubElValByNumber (guint16 group, guint16 element); std::string GetPubElValRepByNumber(guint16 group, guint16 element); TagElValueHT & GetPubElVal(void) { return PubElValSet.GetTagHt(); }; void PrintPubElVal(std::ostream & os = std::cout); void PrintPubDict (std::ostream & os = std::cout); // TODO Swig std::string* GetShaTagNames(); std::string GetShaElValByName (std::string TagName); std::string GetShaElValRepByName (std::string TagName); std::string GetShaElValByNumber (guint16 group, guint16 element); std::string GetShaElValRepByNumber(guint16 group, guint16 element); std::string GetElValByName (std::string TagName); std::string GetElValRepByName (std::string TagName); std::string GetElValByNumber (guint16 group, guint16 element); std::string GetElValRepByNumber(guint16 group, guint16 element); int SetPubElValByName (std::string content, std::string TagName); int SetShaElValByName (std::string content, std::string ShadowTagName); int SetPubElValByNumber(std::string content, guint16 group, guint16 element); int SetShaElValByNumber(std::string content, guint16 group, guint16 element); int SetPubElValLengthByNumber(guint32 lgr, guint16 group, guint16 element); int ReplaceOrCreateByNumber(std::string Value, guint16 Group, guint16 Elem); int ReplaceOrCreateByNumber( char * Value, guint16 Group, guint16 Elem); int GetXSize(void); int GetYSize(void); int GetZSize(void); int GetBitsStored(void); int GetSamplesPerPixel(void); int GetPixelSize(void); std::string GetPixelType(void); float GetXSpacing(void); float GetYSpacing(void); float GetZSpacing(void); float GetXImagePosition(void); float GetYImagePosition(void); float GetZImagePosition(void); int Write(FILE *, FileType); }; #endif