# file clitkDicom2Image.ggo
package "clitk"
version "Try to convert a DICOM into an image (.hdr, .vox...) identifying all available series"

option "config"	  	    -	"Config file"		 string  	no
option "verbose"	      v "Verbose"		 	 flag off
option "tolerance"	    t "Tolerance for slice position"	 double default="0" no
option "output"         o "Output image filename"		string 	yes
option "std_input"      - "Take the like of input file from stdin, to support huge lists of filenames" flag off
option "focal_origin"   - "Output files with FOCAL-like origin, instead of the origin present in the dicom files" flag off
option "patientSystem"  p "Open the image with patient coordinate system" flag off
option "instanceNumber" n "Sort the images regarding instance number in dicom tag" flag off
option "reverse"        r "Reverse the slice order" flag off