# file clitkImage2DicomRTStruct.ggo
package "clitk"
version "Add a (binary) image inside a DICOM RT Structure Set (contours)"

option "config"    - "Config file"                                                    string  no
option "verbose"   v "Verbose"                                                        flag off

option "input"     i "Input image file (binary image) to be converted into contours"  string multiple yes
option "rtstruct"  r "Input rt struct"                                                string  yes
option "dicom"     d "Input folder where the initial dicom ct is"                     string  yes
option "output"    o "Output DicomRT filename"                                        string  yes

option "threshold" t "Threshold for binary image"                                     float no default = "0.5"
option "skip"      s "Do not write in output the structures that was in input"        flag off
option "roitype"   - "Name of the type of roi added into the rt-struct"               string  no default = "ORGAN"