#File clitkImageExtractLine.ggo
package "clitkImageExtractLine"
version "1.0"
purpose "Extract 1D values along a line (in voxels). 3D only."

option "config"	  	-	"Config file"			  string  	no
option "input"		i	"Input image filename"		  string  	yes
option "output"    	o   	"Output txt filename"		  string 	yes
option "verbose"   	v   	"Verbose"			  flag		off

option "firstIndex"	f	"First index value (in voxels)"	  int yes multiple
option "lastIndex"	l	"Last index value (in voxels"	  int yes multiple
option "integral"	I	"Integrate the image along a line"	int 	no	default = "0"
option "integralAxis"	a	"Set the image integration axis"	int 	no	default = "0"

option "mm"		m	"Last/first index are in mm"	  flag off

option "isocenter"	c	"Set isocenter (in mm)" 	  int no multiple
option "depth"		d	"Write depth in output" 	  flag off