Program: gdcm
Module: $RCSfile: PrintFile.cxx,v $
Language: C++
- Date: $Date: 2005/10/18 08:35:43 $
- Version: $Revision: 1.63 $
+ Date: $Date: 2005/11/28 11:54:45 $
+ Version: $Revision: 1.75 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
#include "gdcmOrientation.h"
#include <iostream>
-// TODO : code factorization, for 'sigle file' an 'whole directory' processing
+// TODO : code factorization, for 'single file' an 'whole directory' processing
void ShowLutData(gdcm::File *f);
void ShowLutData(gdcm::File *f)
{
- gdcm::SeqEntry *modLutSeq = f->GetSeqEntry(0x0028,0x3000);
- if ( modLutSeq !=0 )
+ gdcm::SeqEntry *modLutSeq = f->GetSeqEntry(0x0028,0x3000);
+ if ( modLutSeq !=0 )
+ {
+ gdcm::SQItem *sqi= modLutSeq->GetFirstSQItem();
+ if ( sqi != 0 )
{
- gdcm::SQItem *sqi= modLutSeq->GetFirstSQItem();
- if ( sqi != 0 )
+ std::string lutDescriptor = sqi->GetEntryString(0x0028,0x3002);
+ if ( /*lutDescriptor == GDCM_UNFOUND*/ 0 )
{
- std::string lutDescriptor = sqi->GetEntryString(0x0028,0x3002);
- if ( /*lutDescriptor == GDCM_UNFOUND*/ 0 )
- {
- //gdcmWarningMacro( "LUT Descriptor is missing" );
- std::cout << "LUT Descriptor is missing" << std::endl;
- return;
- }
- int length; // LUT length in Bytes
- int deb; // Subscript of the first Lut Value
- int nbits; // Lut item size (in Bits)
-
- int nbRead; // nb of items in LUT descriptor (must be = 3)
-
- nbRead = sscanf( lutDescriptor.c_str(),
- "%d\\%d\\%d",
- &length, &deb, &nbits );
- std::cout << "length " << length
- << " deb " << deb
- << " nbits " << nbits
- << std::endl;
- if ( nbRead != 3 )
- {
- //gdcmWarningMacro( "Wrong LUT descriptor" );
- std::cout << "Wrong LUT descriptor" << std::endl;
- }
- //LUT Data (CTX dependent)
- gdcm::DataEntry *b = sqi->GetDataEntry(0x0028,0x3006);
- if ( b != 0 )
+ std::cout << "LUT Descriptor is missing" << std::endl;
+ return;
+ }
+ int length; // LUT length in Bytes
+ int deb; // Subscript of the first Lut Value
+ int nbits; // Lut item size (in Bits)
+
+ int nbRead; // nb of items in LUT descriptor (must be = 3)
+
+ nbRead = sscanf( lutDescriptor.c_str(),
+ "%d\\%d\\%d",
+ &length, &deb, &nbits );
+ std::cout << "length " << length
+ << " deb " << deb
+ << " nbits " << nbits
+ << std::endl;
+ if ( nbRead != 3 )
+ {
+ std::cout << "Wrong LUT descriptor" << std::endl;
+ }
+ //LUT Data (CTX dependent)
+ gdcm::DataEntry *b = sqi->GetDataEntry(0x0028,0x3006);
+ if ( b != 0 )
+ {
+ int BitsAllocated = f->GetBitsAllocated();
+ if ( BitsAllocated <= 8 )
{
- int BitsAllocated = f->GetBitsAllocated();
- if ( BitsAllocated <= 8 )
- {
- int mult;
- if ( ( nbits == 16 ) && ( BitsAllocated == 8 ) )
- {
- // when LUT item size is different than pixel size
- mult = 2; // high byte must be = low byte
- }
- else
- {
- // See PS 3.3-2003 C.11.1.1.2 p 619
- mult = 1;
- }
- uint8_t *lut = b->GetBinArea();
- for( int i=0; i < length; ++i )
- {
- std::cout << i+deb << " : \t"
- << (int) (lut[i*mult + 1]) << std::endl;
- }
+ int mult;
+ if ( ( nbits == 16 ) && ( BitsAllocated == 8 ) )
+ {
+ // when LUT item size is different than pixel size
+ mult = 2; // high byte must be = low byte
}
else
{
- uint16_t *lut = (uint16_t *)(b->GetBinArea());
- for( int i=0; i < length; ++i )
- {
- std::cout << i+deb << " : \t"
- << (int) (((uint16_t *)lut)[i])
- << std::endl;
- }
+ // See PS 3.3-2003 C.11.1.1.2 p 619
+ mult = 1;
+ }
+ uint8_t *lut = b->GetBinArea();
+ for( int i=0; i < length; ++i )
+ {
+ std::cout << i+deb << " : \t"
+ << (int) (lut[i*mult + 1]) << std::endl;
}
- }
+ }
else
- std::cout << "No LUT Data DataEntry (0x0028,0x3006) found?!? "
- << std::endl;
- }
+ {
+ uint16_t *lut = (uint16_t *)(b->GetBinArea());
+ for( int i=0; i < length; ++i )
+ {
+ std::cout << i+deb << " : \t"
+ << (int) (((uint16_t *)lut)[i])
+ << std::endl;
+ }
+ }
+ }
else
- std::cout << "No First SQ Item within (0x0028,0x3000) ?!? "
- << std::endl;
+ std::cout << "No LUT Data DataEntry (0x0028,0x3006) found?!? "
+ << std::endl;
}
else
- std::cout << "No LUT Data SeqEntry (0x0028,0x3000) found "
- << std::endl;
+ std::cout << "No First SQ Item within (0x0028,0x3000) ?!? "
+ << std::endl;
}
+ else
+ std::cout << "No LUT Data SeqEntry (0x0028,0x3000) found "
+ << std::endl;
+}
int main(int argc, char *argv[])
{
" usage: PrintFile {filein=inputFileName|dirin=inputDirectoryName}[level=n]",
" [forceload=listOfElementsToForceLoad] ",
" [dict= privateDirectory] ",
- " [ { [noshadowseq] | [noshadow][noseq] } ] [debug] ",
+ " [ { [noshadowseq] | [noshadow][noseq] } ] ",
+ " [debug] [warning] ",
" level = 0,1,2 : depending on the amount of details user wants to see",
" listOfElementsToForceLoad : group-elem,g2-e2,... (in hexa, no space)",
" of Elements to load whatever their length ",
" noshadow : user doesn't want to load Private groups (odd number) ",
" noseq : user doesn't want to load Sequences ",
" debug : user wants to run the program in 'debug mode' ",
+ " warning : user wants to be warned about any oddity in the File ",
" showlut :user wants to display the Palette Color (as an int array) ",
FINISH_USAGE
{
am->ArgMgrUsage(usage); // Display 'usage'
delete am;
- return 0;
+ return 1;
}
char *fileName = am->ArgMgrGetString("filein",(char *)0);
char *dirName = am->ArgMgrGetString("dirin",(char *)0);
- if ( (fileName == 0 && dirName == 0)
- ||
+ if ( (fileName == 0 && dirName == 0) ||
(fileName != 0 && dirName != 0) )
{
- std::cout <<std::endl
- << "Either 'filein=' or 'dirin=' must be present;"
- << std::endl << "Not both" << std::endl;
- am->ArgMgrUsage(usage); // Display 'usage'
- delete am;
- return 0;
- }
+ std::cerr << std::endl
+ << "Either 'filein=' or 'dirin=' must be present;"
+ << std::endl << "Not both" << std::endl;
+ am->ArgMgrUsage(usage); // Display 'usage'
+ delete am;
+ return 1;
+ }
if (am->ArgMgrDefined("debug"))
gdcm::Debug::DebugOn();
-
+
+ if (am->ArgMgrDefined("warning"))
+ gdcm::Debug::WarningOn();
+
int loadMode = gdcm::LD_ALL;
if ( am->ArgMgrDefined("noshadowseq") )
loadMode |= gdcm::LD_NOSHADOWSEQ;
{
am->ArgMgrUsage(usage);
delete am;
- return 0;
+ return 1;
}
delete am; // we don't need Argument Manager any longer
if ( fileName != 0 ) // ====== Deal with a single file ======
{
- // gdcm::File::IsReadable() is no usable here, because we deal with
- // any kind of gdcm-Parsable *document*
- // not only gdcm::File (as opposed to gdcm::DicomDir)
-
- gdcm::File *f = new gdcm::File();
+ gdcm::File *f = gdcm::File::New();
f->SetLoadMode(loadMode);
f->SetFileName( fileName );
f->AddForceLoadElement((uint32_t)elemsToForceLoad[2*ri],
(uint32_t)elemsToForceLoad[2*ri+1] );
}
+// TODO : find why such a polution
+// To avoid polluting the output with messages
+// 'Last system error was : No such file or directory'
+
+errno = 0;
+
bool res = f->Load();
+ // gdcm::File::IsReadable() is no usable here, because we deal with
+ // any kind of gdcm-Parsable *document*
+ // not only gdcm::File (as opposed to gdcm::DicomDir)
if ( !res )
{
std::cout << "Cannot process file [" << fileName << "]" << std::endl;
<< std::endl;
std::cout << "use 'PrintFile filein=... debug' to try to guess the pb"
<< std::endl;
- delete f;
+ f->Delete();
return 0;
}
- gdcm::FileHelper *fh = new gdcm::FileHelper(f);
+ gdcm::FileHelper *fh = gdcm::FileHelper::New(f);
fh->SetPrintLevel( level );
fh->Print();
pixelType = f->GetPixelType();
sPP = f->GetSamplesPerPixel();
- planarConfig = f->GetPlanarConfiguration();
-
std::cout << " pixelType= [" << pixelType
<< "] SamplesPerPixel= [" << sPP
- << "] PlanarConfiguration= [" << planarConfig
- << "] "<< std::endl
- << " PhotometricInterpretation= ["
- << f->GetEntryString(0x0028,0x0004)
+ << "] ";
+
+ if (sPP == 3)
+ {
+ planarConfig = f->GetPlanarConfiguration();
+ std::cout << " PlanarConfiguration= [" << planarConfig
+ << "] "<< std::endl;
+ }
+ std::cout << " PhotometricInterpretation= ["
+ << f->GetEntryString(0x0028,0x0004)
<< "] "<< std::endl;
int numberOfScalarComponents=f->GetNumberOfScalarComponents();
std::cout << "Transfer Syntax not loaded. " << std::endl
<< "Better you increase MAX_SIZE_LOAD_ELEMENT_VALUE"
<< std::endl;
+ f->Delete();
return 0;
}
// Let's compute 'user friendly' results about 'Orientation'
// ---------------------------------------------------------
- gdcm::Orientation o;
+ gdcm::Orientation *o = gdcm::Orientation::New();
if ( strImageOrientationPatient != gdcm::GDCM_UNFOUND ||
strImageOrientationRET != gdcm::GDCM_UNFOUND )
{
- gdcm::OrientationType orient = o.GetOrientationType( f );
+ gdcm::OrientationType orient = o->GetOrientationType( f );
std::cout << "TypeOrientation = " << orient << " (-> "
- << o.GetOrientationTypeString(orient) << " )" << std::endl;
+ << o->GetOrientationTypeString(orient) << " )" << std::endl;
}
- std::string ori = o.GetOrientation ( f );
+ std::string ori = o->GetOrientation ( f );
if (ori != "\\" )
std::cout << "Orientation [" << ori << "]" << std::endl;
+ o->gdcm::Orientation::Delete();
//------------------------------
gdcm::SQItem *sqi= modLutSeq->GetFirstSQItem();
if ( !sqi )
{
- std::string lutDescriptor = sqi->GetEntryString(0x0028,0x3002);
+ std::string lutDescriptor = sqi->GetEntryString(0x0028,0x3002);
int length; // LUT length in Bytes
int deb; // Subscript of the first Lut Value
int nbits; // Lut item size (in Bits)
&length, &deb, &nbits );
if ( nbRead != 3 )
{
- //gdcmWarningMacro( "Wrong LUT descriptor" );
std::cout << "Wrong LUT descriptor" << std::endl;
}
gdcm::DataEntry *b = sqi->GetDataEntry(0x0028,0x3006);
ShowLutData(f);
}
- //if( !f->gdcm::Document::IsReadable())
- // Try downcast to please MSVC
- if ( !((gdcm::Document *)f)->IsReadable() )
- {
- std::cout <<std::endl<<fileName<<" is NOT 'gdcm parsable'"<<std::endl;
- }
-
- if (f->IsReadable())
+ // Parsability of the gdcm::Document already checked, after Load() !
+
+ if ( f->IsReadable() )
+ {
std::cout <<std::endl<<fileName<<" is Readable"<<std::endl;
+ }
else if ( f->GetSeqEntry(0x0041,0x1010) )
{
std::cout <<std::endl<<fileName<<" looks like a 'PAPYRUS image' file"
}
std::cout<<std::flush;
- delete f;
- delete fh;
- return 0;
+ f->Delete();
+ fh->Delete();
}
else // ====== Deal with a Directory ======
{
gdcm::DirListType fileList = dirList.GetFilenames();
gdcm::File *f;
bool res;
+
for( gdcm::DirListType::iterator it = fileList.begin();
it != fileList.end();
++it )
{
std::cout << std::endl<<" Start processing :[" << it->c_str() << "]"
<< std::endl;
- f = new gdcm::File();
+ f = gdcm::File::New();
f->SetLoadMode(loadMode);
f->SetFileName( it->c_str() );
std::cout << "use 'PrintFile filein=... debug' "
<< "to try to guess the pb"
<< std::endl;
- delete f;
+ f->Delete();
continue;
}
- gdcm::FileHelper *fh = new gdcm::FileHelper(f);
+ gdcm::FileHelper *fh = gdcm::FileHelper::New(f);
fh->SetPrintLevel( level );
fh->Print();
//------------------------------
- // Lets's get and print some usefull fields about 'Orientation'
- // ------------------------------------------------------------
-
- std::string strPatientPosition =
- f->GetEntryString(0x0018,0x5100);
- if ( strPatientPosition != gdcm::GDCM_UNFOUND
- && strPatientPosition != "" )
- std::cout << "PatientPosition (0x0010,0x5100)= ["
- << strPatientPosition << "]" << std::endl;
-
- std::string strViewPosition =
- f->GetEntryString(0x0018,0x5101);
- if ( strViewPosition != gdcm::GDCM_UNFOUND
- && strViewPosition != "" )
- std::cout << "strViewPosition (0x0010,0x5101)= ["
- << strViewPosition << "]" << std::endl;
-
- std::string strPatientOrientation =
- f->GetEntryString(0x0020,0x0020);
- if ( strPatientOrientation != gdcm::GDCM_UNFOUND
- && strPatientOrientation != "")
- std::cout << "PatientOrientation (0x0020,0x0020)= ["
- << strPatientOrientation << "]" << std::endl;
-
- std::string strImageOrientationPatient =
- f->GetEntryString(0x0020,0x0037);
- if ( strImageOrientationPatient != gdcm::GDCM_UNFOUND
- && strImageOrientationPatient != "" )
- std::cout << "ImageOrientationPatient (0x0020,0x0037)= ["
- << strImageOrientationPatient << "]" << std::endl;
+ // Lets's get and print some usefull fields about 'Orientation'
+ // ------------------------------------------------------------
+
+ std::string strPatientPosition =
+ f->GetEntryString(0x0018,0x5100);
+ if ( strPatientPosition != gdcm::GDCM_UNFOUND
+ && strPatientPosition != "" )
+ std::cout << "PatientPosition (0x0010,0x5100)= ["
+ << strPatientPosition << "]" << std::endl;
+
+ std::string strViewPosition =
+ f->GetEntryString(0x0018,0x5101);
+ if ( strViewPosition != gdcm::GDCM_UNFOUND
+ && strViewPosition != "" )
+ std::cout << "strViewPosition (0x0010,0x5101)= ["
+ << strViewPosition << "]" << std::endl;
+
+ std::string strPatientOrientation =
+ f->GetEntryString(0x0020,0x0020);
+ if ( strPatientOrientation != gdcm::GDCM_UNFOUND
+ && strPatientOrientation != "")
+ std::cout << "PatientOrientation (0x0020,0x0020)= ["
+ << strPatientOrientation << "]" << std::endl;
+
+ std::string strImageOrientationPatient =
+ f->GetEntryString(0x0020,0x0037);
+ if ( strImageOrientationPatient != gdcm::GDCM_UNFOUND
+ && strImageOrientationPatient != "" )
+ std::cout << "ImageOrientationPatient (0x0020,0x0037)= ["
+ << strImageOrientationPatient << "]" << std::endl;
+
+ std::string strImageOrientationRET =
+ f->GetEntryString(0x0020,0x0035);
+ if ( strImageOrientationRET != gdcm::GDCM_UNFOUND
+ && strImageOrientationRET != "" )
+ {
+ std::cout << "ImageOrientationRET (0x0020,0x0035)= ["
+ << strImageOrientationRET << "]" << std::endl;
+ }
- std::string strImageOrientationRET =
- f->GetEntryString(0x0020,0x0035);
- if ( strImageOrientationRET != gdcm::GDCM_UNFOUND
- && strImageOrientationRET != "" )
- std::cout << "ImageOrientationRET (0x0020,0x0035)= ["
- << strImageOrientationRET << "]" << std::endl;
+ // Let's compute 'user friendly' results about 'Orientation'
+ // ---------------------------------------------------------
+
+ gdcm::Orientation *o = gdcm::Orientation::New();
- // Let's compute 'user friendly' results about 'Orientation'
- // ---------------------------------------------------------
-
- gdcm::Orientation o;
- if ( strImageOrientationPatient != gdcm::GDCM_UNFOUND ||
- strImageOrientationRET != gdcm::GDCM_UNFOUND )
- {
-
- gdcm::OrientationType orient = o.GetOrientationType( f );
-
- std::cout << "TypeOrientation = " << orient << " (-> "
- << o.GetOrientationTypeString(orient) << " )" << std::endl;
- }
+ if ( strImageOrientationPatient != gdcm::GDCM_UNFOUND ||
+ strImageOrientationRET != gdcm::GDCM_UNFOUND )
+ {
+
+ gdcm::OrientationType orient = o->GetOrientationType( f );
+
+ std::cout << "TypeOrientation = " << orient << " (-> "
+ << o->GetOrientationTypeString(orient) << " )" << std::endl;
+ }
- std::string ori = o.GetOrientation ( f );
- if (ori != "\\" )
- std::cout << "Orientation [" << ori << "]" << std::endl;
+ std::string ori = o->GetOrientation ( f );
+ if (ori != "\\" )
+ std::cout << "Orientation [" << ori << "]" << std::endl;
+
+ o->gdcm::Orientation::Delete();
//-------------------------------
-
if (f->IsReadable())
std::cout <<std::endl<<it->c_str()<<" is Readable"<<std::endl;
else
std::cout <<std::endl<<it->c_str()<<" is NOT Readable"<<std::endl;
std::cout << "\n\n" << std::endl;
- delete f;
- delete fh;
+ f->Delete();
+ fh->Delete();
}
std::cout<<std::flush;
}
+ return 0;
}