-#For later : rewrite this things for more consistencies, such as a 'FOREACH'
+# CMakeLists for Testing purpose
+# Cxx file that need a file to run should be place aproprietly
-LINK_LIBRARIES(gdcm)
+SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
+
+SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
+
+# add test that does not require data:
+# They usally return if no argument is given
+SET(TEST_SOURCES
+ TestUtil.cxx
+ TestBug.cxx
+ TestHash.cxx
+ TestTS.cxx
+ TestVR.cxx
+ TestDictGroupName.cxx
+ TestDict.cxx
+ TestWriteSimple.cxx
+ TestImageSet.cxx
+ TestDicomDirElement.cxx
+ TestDicomString.cxx
+ #TestValidate.cxx
+)
+
+# add tests that require data
+IF (GDCM_DATA_ROOT)
+ SET(TEST_SOURCES ${TEST_SOURCES}
+ TestFileAccessors.cxx
+ TestMakeIcon.cxx
+ TestPrintAllDocument.cxx # includes generated gdcmDataImages.h
+ #TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
+ TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
+ TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
+ #TestCopyDicom.cxx # includes generated gdcmDataImages.h
+ # TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h
+ #TestChangeHeader.cxx
+ # TestAnonymize.cxx
+ TestDirList.cxx
+ TestDicomDir.cxx # require DICOMDIR
+ TestBuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
+ TestMakeDicomDir.cxx # writes a file named "NewDICOMDIR"
+ TestSerieHelper.cxx # uses gdcmData as a default root directory
+ )
+ # add test that require VTK:
+ IF(GDCM_VTK)
+ IF("${VTK_MAJOR_VERSION}" LESS 4)
+ MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !")
+ ELSE("${VTK_MAJOR_VERSION}" LESS 4)
+ IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2)
+ MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !"
+ "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF")
+ ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2)
+ IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3)
+ MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !"
+ "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF")
+ ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3)
+ # Include the VTK library since we know this is going to work
+ INCLUDE(${VTK_USE_FILE})
+
+ INCLUDE_DIRECTORIES(
+ ${GDCM_SOURCE_DIR}/vtk/
+ )
+ SET(TEST_SOURCES ${TEST_SOURCES}
+ VTKTestRead.cxx
+ VTKTestReadSeq.cxx
+ VTKTestWrite.cxx
+ VTKTestWriteSeq.cxx
+ )
+ ENDIF("${VTK_MAJOR_VERSION}" LESS 4)
+ ENDIF(GDCM_VTK)
+ENDIF (GDCM_DATA_ROOT)
+
+
+
+# include stuff
INCLUDE_DIRECTORIES(
${GDCM_SOURCE_DIR}/src/
+ ${GDCM_BINARY_DIR}/
)
-SET(PrintHeader_SOURCES
- PrintHeader.cxx
-)
-ADD_EXECUTABLE(PrintHeader ${PrintHeader_SOURCES})
+CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
+ADD_EXECUTABLE(gdcmTests ${Tests})
+IF(GDCM_VTK)
+ TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
+ELSE(GDCM_VTK)
+ TARGET_LINK_LIBRARIES(gdcmTests gdcm)
+ENDIF(GDCM_VTK)
-SET(testWrite_SOURCES
- testWrite.cxx
-)
-ADD_EXECUTABLE(testWrite ${testWrite_SOURCES})
+SET (TestsToRun ${Tests})
+REMOVE (TestsToRun gdcmTests.cxx)
-SET(testChangeEntete_SOURCES
- testChangeEntete.cxx
-)
-ADD_EXECUTABLE(testChangeEntete ${testChangeEntete_SOURCES})
+# Loop over files and create executables
+FOREACH(file ${TEST_SOURCES})
+ GET_FILENAME_COMPONENT(name ${file} NAME_WE)
+ ADD_TEST(${name} ${GDCM_TESTS} ${name})
+ENDFOREACH(file ${TEST_SOURCES})
-SET(hashtest_SOURCES
- hashtest.cxx
-)
-ADD_EXECUTABLE(hashtest ${hashtest_SOURCES})
+#-----------------------------------------------------------------------------
-SET(bug1_SOURCES
- bug1.cxx
-)
-ADD_EXECUTABLE(bug1 ${bug1_SOURCES})
+# We need to test the reading of all dicom images in the gdcmData directory
+# First parse this directory and extract all images
+
+IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
+ FILE(GLOB GDCM_DATA_IMAGES_GLOB
+ "${GDCM_DATA_ROOT}/*.acr"
+ "${GDCM_DATA_ROOT}/*.dcm"
+ "${GDCM_DATA_ROOT}/*.nema"
+ "${GDCM_DATA_ROOT}/*.ima"
+ )
+ FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
+ "${GDCM_DATA_ROOT}/*FileSeq0.acr"
+ "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
+ "${GDCM_DATA_ROOT}/*FileSeq0.nema"
+ "${GDCM_DATA_ROOT}/*FileSeq0.ima"
+ )
+ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
+ # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
+ FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
+ "${GDCM_DATA_ROOT}/*.acr"
+ )
+ FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
+ "${GDCM_DATA_ROOT}/*.dcm"
+ )
+ FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
+ "${GDCM_DATA_ROOT}/*.nema"
+ )
+ FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
+ "${GDCM_DATA_ROOT}/*.ima"
+ )
+ SET(GDCM_DATA_IMAGES_GLOB
+ ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
+ ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
+
+ FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
+ "${GDCM_DATA_ROOT}/*FileSeq0.acr"
+ )
+ FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
+ "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
+ )
+ FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
+ "${GDCM_DATA_ROOT}/*FileSeq0.nema"
+ )
+ FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
+ "${GDCM_DATA_ROOT}/*FileSeq0.ima"
+ )
+ SET(GDCM_DATA_SEQ_IMAGES_GLOB
+ ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
+ ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
+ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
+
+# Black list of images known to break lots of readers (efilm, xmedcon ...):
+SET(BLACK_LIST
+
+ # Multiframe Papyrus format image
+ # Just to remember this format exists, and is gdcm::File compliant
+ # (NOT gdcm::FileHelper ...)
+ # any contribution is welcome
+ "PET-cardio-Multiframe-Papyrus.dcm"
+ # From David Clunie's Compresion Dataset
+ "D_CLUNIE_CT1_JLSN.dcm"
+ "D_CLUNIE_CT1_JLSL.dcm"
+ #Not a Dicom Image, but a RT Object
+ "RS2.16.124.113534.2.3.5.0.120040728.21342.353.12747_anonimized.dcm"
+ #Dicom MPEG image
+ "ETIAM_video_002.dcm"
+ #Something stupid occured in the code for LibIDO images.
+ #I Black list them for a while. JP
+ "gdcm-ACR-LibIDO.acr"
+ "LIBIDO-24-ACR_NEMA-Rectangle.dcm"
+ #16 Bits per pixel images with LUT 16 Bits.
+ #I wait to be 100% sure before releasing them. JP
+ "rle16sti.dcm"
+ "rle16loo.dcm"
+ )
+
+# Don't understand why jasper is segfaulting with borland...I bet a borland bug
+IF(BORLAND)
+ SET(BLACK_LIST
+ ${BLACK_LIST}
+ "D_CLUNIE_CT1_J2KR.dcm"
+ "D_CLUNIE_CT1_J2KI.dcm"
+ )
+ENDIF(BORLAND)
+
+# Add a special test that requires dciodvfy from dicom3tools
+INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
+
+# This is a GLOB expression, change it into a list separated with a comma and \n
+SET(GDCM_DATA_IMAGES)
+FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
+ GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
+ IF(DCIODVFY_FOUND)
+ ADD_TEST("DCIODVFY-INPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
+ ADD_TEST("DCIODVFY-OUTPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${GDCM_DATA_ROOT}/BaselineDicom/${filename_temp}")
+ ENDIF(DCIODVFY_FOUND)
+ STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
+ IF(NOT bad_dicom)
+ SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
+ ENDIF(NOT bad_dicom)
+ENDFOREACH(filename)
+
+SET(GDCM_DATA_SEQ_IMAGES)
+FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
+ GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
+ STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
+ IF(NOT bad_dicom)
+ STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
+
+ SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
+ ENDIF(NOT bad_dicom)
+ENDFOREACH(filename)
-SET(pourFindTaggs_SOURCES
- pourFindTaggs.cxx
+# Populate GDCM_DATA_IMAGES:
+FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
+ "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
)
-ADD_EXECUTABLE(pourFindTaggs ${pourFindTaggs_SOURCES})
-SET(dcm2acr_SOURCES
- dcm2acr.cxx
+# Populate GDCM_DATA_SEQ_IMAGES:
+FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
+ "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"
)
-ADD_EXECUTABLE(dcm2acr ${dcm2acr_SOURCES})