#include "clitkImageCommon.h"
// vtk
+#include <vtkVersion.h>
#include <vtkPolyDataToImageStencil.h>
#include <vtkSmartPointer.h>
#include <vtkImageStencil.h>
}
//--------------------------------------------------------------------
+
+//--------------------------------------------------------------------
bool clitk::DicomRTStruct2ImageFilter::ImageInfoIsSet() const
{
return mSize.size() && mSpacing.size() && mOrigin.size();
}
+//--------------------------------------------------------------------
+
+
+//--------------------------------------------------------------------
+void clitk::DicomRTStruct2ImageFilter::SetWriteOutputFlag(bool b)
+{
+ mWriteOutput = b;
+}
+//--------------------------------------------------------------------
+
//--------------------------------------------------------------------
void clitk::DicomRTStruct2ImageFilter::SetROI(clitk::DicomRT_ROI * roi)
//--------------------------------------------------------------------
+//--------------------------------------------------------------------
+void clitk::DicomRTStruct2ImageFilter::SetImage(vvImage::Pointer image)
+{
+ if (image->GetNumberOfDimensions() != 3) {
+ std::cerr << "Error. Please provide a 3D image." << std::endl;
+ exit(0);
+ }
+ mSpacing.resize(3);
+ mOrigin.resize(3);
+ mSize.resize(3);
+ for(unsigned int i=0; i<3; i++) {
+ mSpacing[i] = image->GetSpacing()[i];
+ mOrigin[i] = image->GetOrigin()[i];
+ mSize[i] = image->GetSize()[i];
+ }
+}
+//--------------------------------------------------------------------
+
+
//--------------------------------------------------------------------
void clitk::DicomRTStruct2ImageFilter::SetImageFilename(std::string f)
{
}
//--------------------------------------------------------------------
+
+//--------------------------------------------------------------------
void clitk::DicomRTStruct2ImageFilter::SetOutputOrigin(const double* origin)
{
std::copy(origin,origin+3,std::back_inserter(mOrigin));
}
+//--------------------------------------------------------------------
+
+
//--------------------------------------------------------------------
void clitk::DicomRTStruct2ImageFilter::SetOutputSpacing(const double* spacing)
{
std::copy(spacing,spacing+3,std::back_inserter(mSpacing));
}
+//--------------------------------------------------------------------
+
+
//--------------------------------------------------------------------
void clitk::DicomRTStruct2ImageFilter::SetOutputSize(const unsigned long* size)
{
std::copy(size,size+3,std::back_inserter(mSize));
}
+//--------------------------------------------------------------------
+
//--------------------------------------------------------------------
void clitk::DicomRTStruct2ImageFilter::Update()
}
// Get Mesh
- vtkPolyData * mesh = mROI->GetMesh();
+ vtkPolyData * mesh = mROI->GetMesh();
// Get bounds
double *bounds=mesh->GetBounds();
- // for(int i=0; i<6; i++){
-// DD(bounds[i]);
-// }
// Compute origin
std::vector<double> origin;
// Create new output image
mBinaryImage = vtkSmartPointer<vtkImageData>::New();
+#if VTK_MAJOR_VERSION <= 5
mBinaryImage->SetScalarTypeToUnsignedChar();
+#endif
mBinaryImage->SetOrigin(&origin[0]);
mBinaryImage->SetSpacing(&mSpacing[0]);
mBinaryImage->SetExtent(0, extend[0],
0, extend[1],
0, extend[2]);
+#if VTK_MAJOR_VERSION <= 5
mBinaryImage->AllocateScalars();
+#else
+ mBinaryImage->AllocateScalars(VTK_UNSIGNED_CHAR, 1);
+#endif
- // for(int i=0; i<3; i++){
- // DD(origin[i]);
- // DD(extend[i]);
- // DD(mBinaryImage->GetDimensions()[i]);
- // }
memset(mBinaryImage->GetScalarPointer(), 0,
mBinaryImage->GetDimensions()[0]*mBinaryImage->GetDimensions()[1]*mBinaryImage->GetDimensions()[2]*sizeof(unsigned char));
// Extrude
vtkSmartPointer<vtkLinearExtrusionFilter> extrude=vtkSmartPointer<vtkLinearExtrusionFilter>::New();
+#if VTK_MAJOR_VERSION <= 5
extrude->SetInput(mesh);
///We extrude in the -slice_spacing direction to respect the FOCAL convention (NEEDED !)
- extrude->SetVector(0, 0, -mSpacing[2]);
+ extrude->SetVector(0, 0, -0.5*mSpacing[2]);
+#else
+ extrude->SetInputData(mesh);
+ ///We extrude in the -slice_spacing direction to respect the FOCAL convention (NEEDED !)
+ extrude->SetVector(0, 0, 0.5*mSpacing[2]);
+#endif
// Binarization
vtkSmartPointer<vtkPolyDataToImageStencil> sts=vtkSmartPointer<vtkPolyDataToImageStencil>::New();
//http://www.nabble.com/Bug-in-vtkPolyDataToImageStencil--td23368312.html#a23370933
sts->SetTolerance(0);
sts->SetInformationInput(mBinaryImage);
+#if VTK_MAJOR_VERSION <= 5
sts->SetInput(extrude->GetOutput());
+#else
+ sts->SetInputConnection(extrude->GetOutputPort(0));
+#endif
//sts->SetInput(mesh);
vtkSmartPointer<vtkImageStencil> stencil=vtkSmartPointer<vtkImageStencil>::New();
+#if VTK_MAJOR_VERSION <= 5
stencil->SetStencil(sts->GetOutput());
+#else
+ stencil->SetStencilConnection(sts->GetOutputPort(0));
+#endif
+#if VTK_MAJOR_VERSION <= 5
stencil->SetInput(mBinaryImage);
+#else
+ stencil->SetInputData(mBinaryImage);
+#endif
stencil->ReverseStencilOn();
stencil->Update();