#=========================================================
-INCLUDE(${PROJECT_SOURCE_DIR}/cmake/common.cmake)
+# Add Libraries used in vv and clitk to avoid recompilation
+FOREACH(clitkTool clitkExtractLung clitkExtractPatient)
+ WRAP_GGO(${clitkTool}_GGO_C ${clitkTool}.ggo)
+ SET(GGO_C_FILES ${GGO_C_FILES} ${${clitkTool}_GGO_C})
+ENDFOREACH(clitkTool)
+ADD_LIBRARY(clitkSegmentationGgoLib
+ clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx
+ clitkAnatomicalFeatureDatabase.cxx
+ ${GGO_C_FILES})
#=========================================================
-SET( CMAKE_VERBOSE_MAKEFILE off)
+IF(CLITK_BUILD_SEGMENTATION)
+ WRAP_GGO(clitkConnectedComponentLabeling_GGO_C clitkConnectedComponentLabeling.ggo)
+ ADD_EXECUTABLE(clitkConnectedComponentLabeling clitkConnectedComponentLabeling.cxx ${clitkConnectedComponentLabeling_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ${ITK_LIBRARIES})
+ SET(SEGMENTATION_INSTALL clitkConnectedComponentLabeling)
-#=========================================================
-
-WRAP_GGO(clitkSegmentationFilters_GGO_C
- clitkFillMask.ggo
- clitkConnectedComponentLabeling.ggo
- clitkExtractLung.ggo
- clitkExtractPatient.ggo
- clitkExtractBones.ggo
- clitkExtractMediastinum.ggo
- clitkExtractLymphStations.ggo
-)
-
-SET(clitkSegmentationFilters_SRC
- ${clitkSegmentationFilters_GGO_C}
-)
-
-ADD_LIBRARY(clitkSegmentationFilters STATIC ${clitkSegmentationFilters_SRC})
+ ADD_EXECUTABLE(clitkExtractPatient clitkExtractPatient.cxx ${clitkExtractPatient_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
+ SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractPatient)
-ADD_EXECUTABLE(clitkTestFilter clitkTestFilter.cxx clitkTestFilter_ggo.c)
-TARGET_LINK_LIBRARIES(clitkTestFilter clitkCommon ITKIO clitkSegmentationFilters ITKStatistics)
+ ADD_EXECUTABLE(clitkExtractLung clitkExtractLung.cxx ${clitkExtractLung_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkExtractLung clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
+ SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractLung)
-## Segmentation part
+ WRAP_GGO(clitkExtractBones_GGO_C clitkExtractBones.ggo)
+ ADD_EXECUTABLE(clitkExtractBones clitkExtractBones.cxx ${clitkExtractBones_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
+ SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractBones)
-ADD_EXECUTABLE(clitkConnectedComponentLabeling clitkConnectedComponentLabeling.cxx)
-TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)
+ WRAP_GGO(clitkMorphoMath_GGO_C clitkMorphoMath.ggo)
+ ADD_EXECUTABLE(clitkMorphoMath clitkMorphoMath.cxx ${clitkMorphoMath_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkMorphoMath clitkCommon ${ITK_LIBRARIES})
+ SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMorphoMath)
-ADD_EXECUTABLE(clitkFillMask clitkFillMask.cxx clitkFillMaskGenericFilter.cxx)
-TARGET_LINK_LIBRARIES(clitkFillMask clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)
+ WRAP_GGO(clitkDecomposeAndReconstruct_GGO_C clitkDecomposeAndReconstruct.ggo)
+ ADD_EXECUTABLE(clitkDecomposeAndReconstruct clitkDecomposeAndReconstruct.cxx clitkDecomposeAndReconstructGenericFilter.cxx ${clitkDecomposeAndReconstruct_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkDecomposeAndReconstruct clitkCommon ${ITK_LIBRARIES})
+ SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkDecomposeAndReconstruct)
-ADD_EXECUTABLE(clitkExtractPatient clitkExtractPatient.cxx)
-TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)
+ WRAP_GGO(clitkMotionMask_GGO_C clitkMotionMask.ggo)
+ ADD_EXECUTABLE(clitkMotionMask clitkMotionMask.cxx clitkMotionMaskGenericFilter.cxx ${clitkMotionMask_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkMotionMask clitkCommon ${ITK_LIBRARIES})
+ SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMotionMask)
+
+ SET_TARGET_PROPERTIES(${SEGMENTATION_INSTALL} PROPERTIES INSTALL_RPATH "${VTK_DIR}:${ITK_DIR}" )
+ INSTALL (TARGETS ${SEGMENTATION_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_EXECUTE WORLD_EXECUTE)
-ADD_EXECUTABLE(clitkExtractLung clitkExtractLung.cxx)
-TARGET_LINK_LIBRARIES(clitkExtractLung clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)
+ENDIF(CLITK_BUILD_SEGMENTATION)
-ADD_EXECUTABLE(clitkExtractBones clitkExtractBones.cxx)
-TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)
+# ADD_EXECUTABLE(ScalarImageMarkovRandomField1 ScalarImageMarkovRandomField1.cxx)
+# TARGET_LINK_LIBRARIES(ScalarImageMarkovRandomField1 clitkCommon ${ITK_LIBRARIES} ITKStatistics)
+# ADD_EXECUTABLE(ScalarImageKmeansClassifier ScalarImageKmeansClassifier.cxx)
+# TARGET_LINK_LIBRARIES(ScalarImageKmeansClassifier clitkCommon ${ITK_LIBRARIES} ITKStatistics)
-ADD_EXECUTABLE(clitkExtractMediastinum clitkExtractMediastinum.cxx)
-TARGET_LINK_LIBRARIES(clitkExtractMediastinum clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)
-ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx)
-TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)