option "writeStep" w "Write image at each step" flag off
option "verboseOption" - "Display options values" flag off
option "verboseWarningOff" - "Do not display warning" flag off
+option "verboseMemory" - "Display memory usage" flag off
section "I/O"
-option "mediastinum" m "Input mediastinum mask filename" string yes
-option "trachea" t "Input trachea mask filename" string yes
-option "output" o "Output lungs mask filename" string yes
-
-option "carenaZposition" c "Sup-Inf position of the carena (in mm)" double no
-option "middleLobeBronchusZposition" b "Sup-Inf position of the middle lobe bronchus (in mm)" double no
-option "spacing" - "Intermediate resampling spacing" double no default="6"
-option "fuzzy1" - "Fuzzy relative position threshold" double no default="0.6"
-
-
-
-
+option "afdb" a "Input Anatomical Feature DB" string no
+option "input" i "Input filename" string no
+option "output" o "Output lungs mask filename" string no
+option "station" - "Force to compute station even if already exist in the DB" string no multiple
+
+section "Options for Station 8"
+option "maxAntSpine" - "Distance max to anterior part of the spine in mm" double no default="10"
+option "esophagusDilatationForAnt" - "Dilatation of esophagus, in mm, for 'anterior' limits (default=15,2,1)" double no multiple
+option "esophagusDilatationForRight" - "Dilatation of esophagus, in mm, for 'right' limits (default=5,10,1)" double no multiple
+option "tS8_Esophagus" - "Threshold for 'Post' to dilated Esophagus" double default="0.5" no
+option "injectedThresholdForS8" - "Threshold injected areas in the ct" double default="150" no
+
+section "Options for Station 7"
+option "tS7_Bronchi" - "Threshold for Left/Right bronchi" double default="0.1" no
+option "tS7_LeftSuperiorPulmonaryVein" - "Threshold for LeftSuperiorPulmonaryVein" double default="0.3" no
+option "tS7_RightSuperiorPulmonaryVein" - "Threshold for RightSuperiorPulmonaryVein" double default="0.2" no
+option "tS7_RightPulmonaryArtery" - "Threshold for RightPulmonaryArtery" double default="0.3" no
+option "tS7_LeftPulmonaryArtery" - "Threshold for LeftPulmonaryArtery (NOT USEFUL YET)" double default="0.5" no
+option "tS7_SVC" - "Threshold for SVC" double default="0.2" no
+
+section "Options for Station 3A"
+option "tS3A_Sternum" - "Threshold for Post to Sternum" double default="0.5" no
+option "tS3A_SubclavianArtery" - "Threshold for Ant to SubclavianArtery" double default="0.2" no
+
+section "Options for Station 2RL"
+option "tS2RL_CommonCarotidArtery" - "Threshold for NotAntTo to CommonCarotidArtery" double default="0.7" no
+option "tS2RL_BrachioCephalicTrunk" - "Threshold for NotAntTo to BrachioCephalicTrunk" double default="0.7" no
+option "tS2RL_BrachioCephalicVein" - "Threshold for NotAntTo to BrachioCephalicVein" double default="0.3" no
+option "tS2RL_Aorta" - "Threshold for RightTo to Aorta" double default="0.7" no
+option "tS2RL_SubclavianArteryRight" - "Threshold for NotLeft to SubclavianArteryRight" double default="0.5" no
+option "tS2RL_SubclavianArteryLeft" - "Threshold for NotRight to SubclavianArteryLeft" double default="0.8" no